These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14167#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1690 fasta sequence [CCTTCCCTTTCTCTCTCTCTCTCCCACGTGAGCGCGAGGCGGCGGCGGCGGCGGCGCGAGGTGAGCGGGGCACCAGCGGCGGCGGAGGAGATGGGGAAGGCCTCGAAGGGGTCGCGGAGAGGGAAGAAGGCGTGGCGCGCCAACATCAGCACCGACGACATCGAGGACTTCTTCGAGAAGCAGACGCGCGACGCGCACGCCGGGGCCGCCGCCATCCCGTCCCTGCCCTCCGACTCCCTCTTCTTCGTCGACAAGCCGGCCTCCGCCGCGTCCACCTCCTCCGCCGCCGACGCCGCCGCGGCGGATGTCGCCCCCAAAGATATTCCTGTCCAAAGGAAGATTGAGAAGAAGAGAGAGAAGGTTCTATATCATGAGAGTGTATTGAAGCGGAATCCATATGTACAACCAG-TCCCGTCTTCTTTAACGACAAAG-AAGGATAAGAAGAAG-TCAAAGAAGAA-GGAATCGAAAGAGACACA-GGAAGCGAAAATTGTTCCCATGGAAGATGATTCAGGTGATAAGATCCTTGACATCTGGGGTGAAGATGTTAAAGGAGATCACAAGGCTAAAAAGAGGTCTACCGCATCTGTGATTCCTGCTGTTGAAGTTGAGGCCCCAGGATGTTCATTTAATCCCCCATTCGAAGCACATCAGGATTCTCTTGCTCAAGCTGTTGCTGATGAGATGCGTAAAATCTACACGAAAGAGTTAGGGCCCAAACCTGTGCCACTTATTGTTCCTGGTGAAGCAATCACTGAAGAAGATAAATTTTTTCTTGATGCGGATGATGGAGATGAAGCTGTTGAAGAAGGTGATGAAGACCAGGCTGCTGATGCTTTGGCTGTTCAGAGGAAAACTAAAACGAAAAGAGTTACAAGAGTAGAACTGAACAAAAGAGCTCGTCGTAAGGA--GAGGTTAAGAGCAGAAGCTGAAGCAAAGAAGATGGAAAATCTTTCAAAGGAAATAGATAGC-CTGCCTGATATAATAAATGAAATTGCTAA-AGAAGATGAGGAAAAGGAGAAAAGGCACATAAGGCGAACTGTGGCTAAACAGGAAAGACTGAAGTCAGCCCCGCCTCGTCTGGGCAGACACAAATTTGAA-CCAGCTCCTGTT-CAAGTTCTA-TTAACAGA-AGAGATTAGTGGCT-CTCTTAGAAAGCTGAAGGGGTGCTGTAATCTAGCAAGGGACCGATATAAGAGCATCGAGAAACGTGGAATACTTGCACCAAGCAGAAAAATAAGGAAGCAACGCTAGAAATGCCACCTGTGCATGTTCCAGTACAAATGATTCCAGTACAAATGAGGAACATGGCGATCCCAGACGTGGAGCGTCTTGAACAACATCAAGGAACAGGCGCTGTGGAGGCA-TTGGAGAGCGCTCACAAGGCTATGGAAAATCGTACTCTTCAAACAGATCTGACGAAGCCAAAATTGCTTCGGAAGTTTAGACGGATAGTTTATTCTCTTTATATTCGAGTTTTTAATTGTTACAAGTTTTGTAGTGCCAGGGCAATGCTNAATCGTTGAATTGTCCTCTNAATTGCCTGNGGCA-AGNTTTGGNACGTNGAACTATAAAT-CTCTTATTATTGCAAACTACT-GTACTACTTGNTTATGTAAGATATGGCTCA-TTTTACCATCTCTACACTGGAAATTAGCTTCCCTATGTAATATGCCNTAAATACATAAAANCTATTGNC] [+] EMBL CB672516 [CCTTCCCTTTCTCTCTCTCTCTCCCACGTGAGCGCGAGGCGGCGGCGGCGGCGGCGCGAGGTGAGCGGGGCACCAGCGGCGGCGGAGGAGATGGGGAAGGCCTCTAAGGGGTCGCGGAGAGGGAATAAGGCGTGGCGCGCCAACATCAGCACCGACGACATCGAGGACTTCTTCGAGAAGCAGACGCTCGACGCGCACGCCGGGGCCGCCGCCATCCCGTCCCTGCCCTCCGACTCCCTCTTCTTCGTCTACAAGCCGGCCTCCGCCGCGTCCACCTCCTCCGCCGCCGACGCCGCCGCGGCGGATGTCGCCCCCAAACATATTCCTGTCCTAAGGAAGATTGATAAGAACACACAGAAGGTTCTATATCCTGAGACTGTATTGAAGCGGAATCCATATGTACAACCAGTTCCCGTCTTCTTTATCGACAATT AAGGATAt ] [+] EMBL CB646756 [ CTCTCTCTCCCACGTGAGCGCGAGGCGGCGGCGGCGGCGGCGCGAGGTGAGCGGGGCACCAGCGGCGGCGGAGGAGATGGGGAAGGCCTCGAAGGGGTCGCGGAGAGGGAAGAAGGCGTGGCGCGCCAACATCAGCACCGACGACATCGAGGACTTCTTCGAGAAGCAGACGCGCGACGCGCACGCCGGGGCCGCCGCCATCCCGTCCCTGCCCTCCGACTCCCTCTTCTTCGTCGACAAGCCGGCCTCCGCCGCGTCCACCTCCTCCGCCGCCGACGCCGCCGCGGCGGATGTCGCCCCCAAAGATATTCCTGTCCAAAGGAAGATTGAGAAGAAGAGAGAGAAGGTTCTATATCATGAGAGTGTATTGAAGCGGAATCCATATGTACAACCAG TCCCGTCTTCTTTAACGACAAAG AAGGATAAGAAGAAG TCAAAGAAGAA GGAATCGAAAGAGACACA GGAAGCGAAAATTGTTCCCATGGAAGATGATTCAGGTGATAAGATCCTTGACATCTGGGGTGAAGATGTTAAAGGAGATCACAAGGCTAAAAAGAGGTCTACCGCATCTGTGATTCCTGCTGTTGAAGTTGAGGCCCCAGGATGTTCATTTAATCCCCCATTCGAAGCACATCAGGATTCTCTTGCTCAAGCTGTTGCTGATGAGATGCGTAAAATCTACACGAAAGAGTTAGGGCCCAAACCTGTGCCACTTATTGTTCCTGGTGAAGCAATCACTGAAGAAGATAAATTT ] [+] EMBL AU077716 [ AGCGGCGGCGGAGGAGATGGGGAAGGCCTCGAAGGGGTCGCGGAGAGGGAAGAAGGCGTGGCGCGCCAACATCAGCACCGACGACATCGAGGACTTCTTCGAGAAGCAGACGCGCGACGC CACGCCGGGGCCGCCGCCATCCCGTCCCTGCCCTCCGACTCCCTCTTCTTCGTCGACAAGCCGGCCTCCGCCGCGTCCACCTCCTCCGCCGCCGACGCCGCCGCGGCGNATGTCGCCCCCAAAGATATTCCTGTCCAAAGGAAGATTGAGAAGAAGAGAGAGAAGGTTCTATATCATGAGAGTGTATTGAAGCGGAATCCATATGTACAACCAG TCCCGTCTTCTTTAACGACAAAGAAAGGATAAGAAGAAGTTCAAAGAAGAAGGGAATCGAAAGAGACACAGGGAAGCGAAAATTGTTCCCATGGAAGATGATTCAGGTGATA ] [+] EMBL CB096208 [ gg GGAATCGAAAGAGACACA GGAAGCGAAAATTGTTCCCATGGAAGATGATTCAGGTGATAAGATCCTTGACATCTGGGGTGAAGATGTTAAAGGAGACCACAAGGCTAAAAAGAGGTCTACCGCATCTGTGATTCCTGCTGTTGAAGTTGAGGCCCCAGGATGTTCATTTAATCCCCCATTCAAAGCACATCAGGATTCTCTTGCTCAAGCTGTTGCTGATGAGATGCGTAAAATCTACACGAAAGAGTTAGGGCCCAAACCTGTGCCACTTATTGTTCCTGGTGAAGCAATCACTGAAGAAGATAAATTTTTTCTTGATGCGGATGATGGAGATGAAGCTGTTGAAGAAGGTGATGAAGACCAGGCTGCTGATGCTTTGGCTGTTCAGAGGAAAACTAAAA ] [+] EMBL CB678442 [ TTGTTCCCATGGAAGATGATTCAGGTGATAAGATCCTTGACATCTGGGGTGAAGATGTTAAAGGAGATCACAATGCTAAAAAGAGGTCTACCGCATCTGTGATTCCTGCTGTTGAAGCTGACGCCCCATGATGTTCATTTAATCCCCCATTCGAAGCACATCAAGATTCTCTTGCTCAAGCTGTTGCTGATGAGATGCGTAAAATCTACACAAAAGAGTTAGGGCCCAAACCTGTGCCACTTATTGTTCCTGGTGA ] [+] EMBL CB631259 [ GGGCCCAAACCTGTGCCACTTATTGTTCCTGGTGAAGCAATCACTGAAGAAGATAAATTTTTTCTTGATGCGGATGATGGAGATGAAGCTGTTGAAGAAGGTGATGAAGACCAGGCTGCTGATGCTTTGGCTGTTCAGAGGAAAACTAAAACGAAAAGAGTTACAAGAGTAGAACTGAACAAAAGAGCTCGTCGTAAGGA GAGGTTAAGAGCAGAAGCTGAAGCAAAGAAGATGGAAAATCTTTCAAAGGAAATAGATAGC CTGCCTGATATAATAAATGAAATTGCTAA AGAAGATGAGGAAAAGGAGAAAAGGCACATAAGGCGAACTGTGGCTAAACAGGAAAGACTGAAGTCAGCCCCGCCTCGTCTGGGCAGACACAAATTTGAA CCAGCTCCTGTT CAAGTTCTA TTAACAGA AGAGATTAGTGGCT CTCTTAGAAAGCTGAAGGGGTGCTGTAATCTAGCAAGGGACCGATATAAGAGCATCGAGAAACGTGGAATACTTGCACCAAGCAGAAAAATAAGGAAGCAACGCTAGAAATGCCACCTGTGCATGTTCCAGTACAAATGATTCCAGTACAAATGAGGAACATGGCGATCCCAGACGTGGAGCGTCTTGAACAACATCAAGGAACAGGCGCTGTGGAGGCA TTGGAGAGCGCTCACAAGGCTATGGAAAATCGTACTCTTCAAACAGATCTGACGAAGCCAAAATTGCTTCGGAAGTTTAGACGGATAGTTTATTCTCTTTATATTCGAGTTTTTAATTGTTACAAGTTTTGTAGTGCCAGGGCAATGCTNCATCGTTGAATTGT ] [+] EMBL D43223 [ GCTGCTGATGCTTTGGCTGTTCAGAGGAAAACTAAAACGAAAAGAGTTACAAGAGTAGAACTGAACAAAAGAGCTCGTCGTAAGGA GAGGTTAAGAGCAGAAGCTTAAGCAAAGAAGATGGAAAATCTTTCAAAGGAAATAGATAGC CTGCCTGATATAATAAATGCAATTGCTAA AGCAGATGAGGAAAAGGAGAAAAGGCACATAAGGCGAACTGTGGCTAAACAGGAAAGACTGAAGTCAGCCCCGCCTCGTCTGGGCAGACACAAATTTGAACCCAGCTCCTGTTCCAAGTTCTATTTAACAGATTGNGATTAGT ] [+] EMBL CA764847 [ ccAAGGACGGNGGTTNNGAGCANAAGCTGAAGCAGAGAAGATGGAAAATCTTTCAAAGGAAATAGATAGCGCTGCCTGATATANTANATGAAGTTGCTAACTGAAGATGAGGAAAAGGAGAAAAGGCACATAAGGCGAACTGTGGCTNAACAGGAAAGACTGAAGTCAGCCCCGCCTCGTCTGNGCAGACACANATTTGAA CCANNTCCTGTT CAAGTTCTA TTAACANA AGAGATTAGTGGNTACTCTTATAAAGCTGAAGGGGCGCTGTAATCTAGCAAGGGACCGATATAAGAGCATGGAGANACGTGGAATACTTGCACCAAGCAGAAAAATANGGAAGCAACGCTAGAAATGCCACCTGTGCATGTTCCAGTACAAATGATTCCAGTGCAAATGAGGAACATGGCGATCCCAGACGNGAAGCGTCTTGAACAACGGCAAGGAACAGGCGCTGTGGAGGCA TTGGANAGCGCTCACAAGGCTATGGAAAATCGTACTCTTCANACANATCTGACGAAGCCAAATTTGCTTCGGAAGTTTAGACGGATAGGTTATTCTCTTTATATTNGAGTTTTTAATTGTTACAAGTTTTGTAGTGCCAGGGCAATGCTNAATCGNTGAATTGTCCTCTNAATTGCCTGNGGCANAGNTTTGGNACGTNGAACTATAAATGCTCTTATTATTGCAAACTACTGGTACTACTTGNTTATGTAAGATATGGCTCANTTTTACCATCTCTACACTGGAAATTAGCTTCCCTATGTAATATGCCNTAAATACATAAAANCTATTGNC] [+] EMBL BI808169 [ ATTTGAA CCAGCTCCTGTT CAAGTTCTA TTAACAGA AGAGATTAGTGGCT CTCTTAGAAAGCTGAAGGGGTGCTGTAATCTAGCAAGGGACCGATATAAGAGCATCGAGAAACGTGGAATACTTGCACCAAGCAGAAAAATAAGGAAGCAACGCTAGAAATGCCACCTGTGCATGTTCCAGTACAAATGATTCCAGTAC AATGAGGAACATGGCGATCCCAGACGTGGAGCGTCTTGAACAACATCAAGGAACAGGCGCTGTGGAGGCACTTGGAGAGCGCTCACAAGGCTATGGAAAATCGTACTCTTCAAACAGATCTGACGAAGCCCAAATTGCTTCGGAAGTTTAGACGGATAGTTTATTCTCTTTATATTCGAGTTTTTAATTGTTACAAGTTTTGTAGTGCCAGGGCAATGCTCAATCGTTGAATTGTCCTCTGAATTGCCTGAGGCA AGTTTTGGAACGTCGAACTATAAAT CTCTTATTATTGTAAACTACT GTTCTACTTGTTTATGTAAGATATGGCTCA TTTTACCATCTCTAaaaaaa ] consensusID : consensus_14167#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 818 fasta sequence [AGTAGAACTGAACAAAAGAGCTCGTCGTAAGGAGAGGTTAAGAGCAGAAGCTGAAGCAAAGAAGATGGAAAATCTTTCAAAGGAAATAGATAGCCTGCCTGATATAATAAATGAAATTGCTAAAGAAGATGAGGAAAAGGAGAAAAGGCACATAAGGCGAACTGTGGCTAAACAGGAAAGACTGAAGTCAGCCCCGCCTCGTCTGGGCAGACACAAATTTGAACCAGCTCCTGTTCAAGTTCTATTAACAGAAGAGATTAGTGGCTCTCTTAGAAAGCTGAAGGGGTGCTGTAATCTAGCAA-GGGACCGATATAA-GAGCATCGAGAAACGTGGAATACTTGCACCAAGCAGAAAAATAAGGAAGCAACGCTAGAAATGCCACCTGTGCATGTT-CCAGTACAAATGAGGAACATGGCGATCCCAGAC-GTGGAGCGTCTTGAACAACATCAAGGAACAGGCGCTGTGGAGGCATTGGAGAGCGCTCACAAGGCTATGGAAAATCGTACTCTTCAAACAGATCTGACGAAGCCAAAATTGCTTCGGAAGTTTAGACGGATAGTTTATTCTCTTTATATTCGAGTTTTTAATTGTTACAAGTTTTGTAGTGCCAGGGCAATGCTCAATCGTTGAATTGTCCTCTGAATTGCCTGAGGCAAAGTTTTGGAACGTCAAACTATAAATCTCTTATTATTGTAAACTACTGTTCTACTTGTTTATGTAAGATATGGCTCAATTTTACCATCTCTACACTGAAATTAGCTTCCTATGTAATATACCGTAAATACATAAACCCTATTGGCTTTAAAAAACTTAAAAGA] [-] EMBL CB672517 [AGTAGAACTGAACAAAAGAGCTCGTCGTAAGGAGAGGTTAAGAGCAGAAGCTGAAGCAAAGAAGATGGAAAATCTTTCAAAGGAAATAGATAGCCTGCCTGATATAATAAATGAAATTGCTAAAGAAGATGAGGAAAAGGAGAAAAGGCACATAAGGCGAACTGTGGCTAAACAGGAAAGACTGAAGTCAGCCCCGCCTCGTCTGGGCAGACACAAATTTGAACCAGCTCCTGTTCAAGTTCTATTAACAGAAGAGATTAGTGGCTCTCTTAGAAAGCTGAAGGGGTGCTGTAATCTAGCAA GGGACCGATATAA GAGCATCGAGAAACGTGGAATACTTGCCCCAAGCAGAAAAATAAGGAAGCAACGCTAGAAATGCCACCTGTGCATGTT CCAGTACAAATGAGGAACATGGCGATCCCAGAC GTGGAGCGTCTTGAACAACATCAAGGAACAGGCGCTGTGGAGGCATTGGAGAGCGCTCACAAGGCTATGGAAAATCGTACTCTTCAAACAGATCTGACGAAGCCAAAATTGCTTCGGAAGTTTAGACGGATAGTTTATTCTCTTTATATTCGAGTTTTTAATTGTTACAAGTTTTGTAGTGCCAGGGCAATGCTCAATCGTTGAATTGTCCTCTGAATTGCCTGAGGCAAAGTTTTGGAACGTCAAACTATAAATCTCTTATTATTGTAAACTACTGTTCTACTTGTTTATGTAAGATATGGCTCAATTTTACCATCTCTACACTGAAATTAGCTTCCTATGTAATATACCGTAAATACATAAACCCTATTGGCTTTAAAAAACTTAAAAGA] [-] EMBL CB646757 [ GAAAGCGGAAGGGGTGCTGTAATCTAGCAAGGGGACCGATATAAGGAGCATCGAGAAACGTGGAATACTTGCACCAAGCAGAAAAATAAGGAAGCAACGCTAGAAATGCCACCTGTGCATGTT CCAGTACAAATGAGGAACATGGCGATCCCAGACGGTGGAGCGTCTTGAACAACATCAAGGAACAGGCGCTGTGGAGGCATTGGAGAGCGCTCACAAGGCTATGGAAAATCGTACTCTTCAAACAGATCTGACGAAGCCAAAATTGCTTCGGAAGTTTAGACGGATAGTTTATTCTCTGTATATTCGAGTTTTTAATTGTTACAAGTTTTGTAGTGCCAGGGCAATGCTCAATCGTTGAATTGTCCTCTGAATTCCCGGAGGCAAAGTTTTGGAACGTCAAACTATAAATCTCTTATTATTGTAAACTGCTGTTCTACTTGTTTATGTAAG ] [+] EMBL AU077717 [ ATATAA GAGCATCGAGAAACGTGGAATACTTGCACCAAGCAGAAAAATAAGGAAGCAACGCTAGAAATGCCACCTGTGCATGTTCCCAGTACAAATGAGGAACATGGCGATCCCAGAC GTGGAGCGTCTTGAACAACATCAAGGAACAGGCGCTGTGGAGGCATTGGAGAGCGCTCACAAGGCTATGGAAAATCGTACTCTTCAAACAGATCTGACGAAGCCAAAATTGCTTCGGAAGTTTAGACGGATAGTTTATTCTCTTTATATTCGAGTTTTTAATTGTTACAAGTTTTGTAGTGCCAGGGCAATGCTCAATCGTTGAATTGTCCTCTGAATTGCCTGAGGCAAAGTTTTGGAACGTCAAACTATAAATCTCTTATTATTGTAAACTACTGTTCTACTTGTTTATGTAAGATATGGCTCAATTTTACCATCTCTAaaaaaaaa ] consensusID : consensus_14167#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 781 fasta sequence [CCCCTTCCCGCTCTCTCTCTCTCTCCCACGTGAGCGCGAGGCGGCGGCGGCGGCGGCGCGAGGTGAGCGGGGCACCAGCGGCGGCGGAGGAGATGGGGAAGGCCTCGAAGGGGTCGCGGAGAGGGAAGAAGGCGTGGCGCGCCAACATCAGCACCGACGACATCGAGGACTTCTTCGAGAAGCAGACGCGCGACGCGCACGCCGGGGCCGCCGCCATCCCGTCCCTGCCCTCCGACTCCCTCTTCTTCGTCGACAAGCCGGCCTCCGCCGCGTCCACCTCCTCCGCCGCCGACGCCGCCGCGGCGGATGCCGCCCCCAAAGATATTCCTGTCAAAAGGAAGATTGAGAAGAAGAGAGAGAAGGTTCTATATCATGAGAGTGTATTGAAGCGGAATCCATATATACAACCAGTCCCGTCTTCTTTAACGACAAAGAAGGATAAGAAGAAGTCAAAGAATAAGGAATCCAAAGAGACACAGGAAGCGAAAATTGTTCCCATGGAAGATGATTCAGGTGATAAGATCCTTGACATTTGGGGTGAAAATGTTAAAGGAGACCACAAGGGCTAAAAGAGGTCTACCGCATCTGTGATTCCTGCTGTTGAAGTTGAGGCCCCAGATGTTATTTTATCCCCCATTCGAAGCGACATAGGATTTCTTGCTCAAACTGTTGTGATGAGATTGCTAAATCTACCGAAAAAGTTAGGCCCAACCTGGCCATTATTGGCCTTGGGAGAATAACTGAAAAATAATTTTTTTGTTCCGTTATATAATAACTTTAA] [+] EMBL BE040858 [CCCCTTCCCGCTCTCTCTCTCTCTCCCACGTGAGCGCGAGGCGGCGGCGGCGGCGGCGCGAGGTGAGCGGGGCACCAGCGGCGGCGGAGGAGATGGGGAAGGCCTCGAAGGGGTCGCGGAGAGGGAAGAAGGCGTGGCGCGCCAACATCAGCACCGACGACATCGAGGACTTCTTCGAGAAGCAGACGCGCGACGCGCACGCCGGGGCCGCCGCCATCCCGTCCCTGCCCTCCGACTCCCTCTTCTTCGTCGACAAGCCGGCCTCCGCCGCGTCCACCTCCTCCGCCGCCGACGCCGCCGCGGCGGATGCCGCCCCCAAAGATATTCCTGTCAAAAGGAAGATTGAGAAGAAGAGAGAGAAGGTTCTATATCATGAGAGTGTATTGAAGCGGAATCCATATATACAACCAGTCCCGTCTTCTTTAACGACAAAGAAGGATAAGAAGAAGTCAAAGAATAAGGAATCCAAAGAGACACAGGAAGCGAAAATTGTTCCCATGGAAGATGATTCAGGTGATAAGATCCTTGACATTTGGGGTGAAAATGTTAAAGGAGACCACAAGGGCTAAAAGAGGTCTACCGCATCTGTGATTCCTGCTGTTGAAGTTGAGGCCCCAGATGTTATTTTATCCCCCATTCGAAGCGACATAGGATTTCTTGCTCAAACTGTTGTGATGAGATTGCTAAATCTACCGAAAAAGTTAGGCCCAACCTGGCCATTATTGGCCTTGGGAGAATAACTGAAAAATAATTTTTTTGTTCCGTTATATAATAACTTTAA] consensusID : consensus_14167#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 773 fasta sequence [CGTAAGGAGAGGCTAAGAGCAGAAGCTGAAGCAAAGAAGATGGAAAATCTTTCAAAGGAAATAGATAGCCTGCCTGATATAATAAATGAAATTGCTAAAGAAGATGAGGAAAAGGAGAAAAGGCACATAAGGCGAACTGTGGCTAAACAGGAAAGACTGAAGTCAGCCCCGCCTCGTCTGGGCAGACACAAATTTGAACCAGCTCCTGTTCAAGTTCTATTAACAGAAGAGATTAGTGGCTCTCTTAGAAAGCTGAAGGGGTGCTGTAATCTAGCAAGGGACCGATATAAGAGCATCGAGAAACGTGGAATACTTGCACCAAGCAGAAAAATAAGGAAGCAACGCTAGAAATGCCCCCTGTGCATGTTCCAGTCCAAATGAGGAACATGGCGATCCCAGACGTGGAGCGTCTTGAACAACATCAAGGAACAGGCGCTGTGGAGGCATTGGAGAGCGCTCACAAGGCTATGGAAAATCGTACTCTTCAAACAGATCTGACGAAGCCAAAATTGCTTCGGAAGTTTAGACGGATAGTTTATTCTCTTTATATTCGAGTTTTTAATTGTTACAAGTTTTGTAGTGCCAGGCCAATGCTCAATCGTTGAATTGTCCTCTGAATTCCCTGAGGCAAAGTTTTGGAACGTCAAACTATAAATCTCTTATTATTGTAAACATACTGTTCTACTTGTTTATGTAAGATATGGCTCAATTTTACCATCTCTCCAAAAAGATTAGCTTCCTATGTAATATGCCTTAAATCCCTCTTAAAGGAA] [-] EMBL CB678489 [CGTAAGGAGAGGCTAAGAGCAGAAGCTGAAGCAAAGAAGATGGAAAATCTTTCAAAGGAAATAGATAGCCTGCCTGATATAATAAATGAAATTGCTAAAGAAGATGAGGAAAAGGAGAAAAGGCACATAAGGCGAACTGTGGCTAAACAGGAAAGACTGAAGTCAGCCCCGCCTCGTCTGGGCAGACACAAATTTGAACCAGCTCCTGTTCAAGTTCTATTAACAGAAGAGATTAGTGGCTCTCTTAGAAAGCTGAAGGGGTGCTGTAATCTAGCAAGGGACCGATATAAGAGCATCGAGAAACGTGGAATACTTGCACCAAGCAGAAAAATAAGGAAGCAACGCTAGAAATGCCCCCTGTGCATGTTCCAGTCCAAATGAGGAACATGGCGATCCCAGACGTGGAGCGTCTTGAACAACATCAAGGAACAGGCGCTGTGGAGGCATTGGAGAGCGCTCACAAGGCTATGGAAAATCGTACTCTTCAAACAGATCTGACGAAGCCAAAATTGCTTCGGAAGTTTAGACGGATAGTTTATTCTCTTTATATTCGAGTTTTTAATTGTTACAAGTTTTGTAGTGCCAGGCCAATGCTCAATCGTTGAATTGTCCTCTGAATTCCCTGAGGCAAAGTTTTGGAACGTCAAACTATAAATCTCTTATTATTGTAAACATACTGTTCTACTTGTTTATGTAAGATATGGCTCAATTTTACCATCTCTCCAAAAAGATTAGCTTCCTATGTAATATGCCTTAAATCCCTCTTAAAGGAA] consensusID : consensus_14167#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 170 fasta sequence [TTACCAAGTTTTCGTAGTGACCAGGGCAACTGCATCAATGCGACTGTGAATTGTCCTCTGAATTGCCTGAGGCAAAGTTTTGGAACGTCGAACTATAAATCTCTTATTATTGTAAACTACTGTTCTACTTGTTTATGTANGATATGGCTCAATTTTNCCATCTCTGAAAA] [+] EMBL BQ909092 [TTACCAAGTTTTCGTAGTGACCAGGGCAACTGCATCAATGCGACTGTGAATTGTCCTCTGAATTGCCTGAGGCAAAGTTTTGGAACGTCGAACTATAAATCTCTTATTATTGTAAACTACTGTTCTACTTGTTTATGTANGATATGGCTCAATTTTNCCATCTCTGAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14167#1 ------------------------------------------------------------ consensus_14167#3 ------------------------------------------------------------ consensus_14167#4 ------------------------------------------------------------ consensus_14167#0 CCTTCCCTTTCTCTCTCTCTCTCCCACGTGAGCGCGAGGCGGCGGCGGCGGCGGCGCGAG 60 consensus_14167#2 ------------------------------------------------------------ consensus_14167#1 ------------------------------------------------------------ consensus_14167#3 ------------------------------------------------------------ consensus_14167#4 ------------------------------------------------------------ consensus_14167#0 GTGAGCGGGGCACCAGCGGCGGCGGAGGAGATGGGGAAGGCCTCGAAGGGGTCGCGGAGA 120 consensus_14167#2 ------------------------------------------------------------ consensus_14167#1 ------------------------------------------------------------ consensus_14167#3 ------------------------------------------------------------ consensus_14167#4 ------------------------------------------------------------ consensus_14167#0 GGGAAGAAGGCGTGGCGCGCCAACATCAGCACCGACGACATCGAGGACTTCTTCGAGAAG 180 consensus_14167#2 ------------------------------------------------------------ consensus_14167#1 ------------------------------------------------------------ consensus_14167#3 ------------------------------------------------------------ consensus_14167#4 ------------------------------------------------------------ consensus_14167#0 CAGACGCGCGACGCGCACGCCGGGGCCGCCGCCATCCCGTCCCTGCCCTCCGACTCCCTC 240 consensus_14167#2 ------------------------------------------------------------ consensus_14167#1 ------------------------------------------------------------ consensus_14167#3 ------------------------------------------------------------ consensus_14167#4 ------------------------------------------------------------ consensus_14167#0 TTCTTCGTCGACAAGCCGGCCTCCGCCGCGTCCACCTCCTCCGCCGCCGACGCCGCCGCG 300 consensus_14167#2 ------------------------------------------------------------ consensus_14167#1 ------------------------------------------------------------ consensus_14167#3 ------------------------------------------------------------ consensus_14167#4 ------------------------------------------------------------ consensus_14167#0 GCGGATGTCGCCCCCAAAGATATTCCTGTCCAAAGGAAGATTGAGAAGAAGAGAGAGAAG 360 consensus_14167#2 ------------------------------------------------------------ consensus_14167#1 ------------------------------------------------------------ consensus_14167#3 ------------------------------------------------------------ consensus_14167#4 ------------------------------------------------------------ consensus_14167#0 GTTCTATATCATGAGAGTGTATTGAAGCGGAATCCATATGTACAACCAGTCCCGTCTTCT 420 consensus_14167#2 ------------------------------------------------------------ consensus_14167#1 ------------------------------------------------------------ consensus_14167#3 ------------------------------------------------------------ consensus_14167#4 ------------------------------------------------------------ consensus_14167#0 TTAACGACAAAGAAGGATAAGAAGAAGTCAAAGAAGAAGGAATCGAAAGAGACACAGGAA 480 consensus_14167#2 ------------------------------------------------------------ consensus_14167#1 ------------------------------------------------------------ consensus_14167#3 ------------------------------------------------------------ consensus_14167#4 ------------------------------------------------------------ consensus_14167#0 GCGAAAATTGTTCCCATGGAAGATGATTCAGGTGATAAGATCCTTGACATCTGGGGTGAA 540 consensus_14167#2 ------------------------------------------------------------ consensus_14167#1 ------------------------------------------------------------ consensus_14167#3 ------------------------------------------------------------ consensus_14167#4 ------------------------------------------------------------ consensus_14167#0 GATGTTAAAGGAGATCACAAGGCTAAAAAGAGGTCTACCGCATCTGTGATTCCTGCTGTT 600 consensus_14167#2 ------------------------------------------------------------ consensus_14167#1 ------------------------------------------------------------ consensus_14167#3 ------------------------------------------------------------ consensus_14167#4 ------------------------------------------------------------ consensus_14167#0 GAAGTTGAGGCCCCAGGATGTTCATTTAATCCCCCATTCGAAGCACATCAGGATTCTCTT 660 consensus_14167#2 ------------------------------------------------------------ consensus_14167#1 ------------------------------------------------------------ consensus_14167#3 ------------------------------------------------------------ consensus_14167#4 ------------------------------------------------------------ consensus_14167#0 GCTCAAGCTGTTGCTGATGAGATGCGTAAAATCTACACGAAAGAGTTAGGGCCCAAACCT 720 consensus_14167#2 ------------------------------------------------------------ consensus_14167#1 ------------------------------------------------------------ consensus_14167#3 ------------------------------------------------------------ consensus_14167#4 ------------------------------------------------------------ consensus_14167#0 GTGCCACTTATTGTTCCTGGTGAAGCAATCACTGAAGAAGATAAATTTTTTCTTGATGCG 780 consensus_14167#2 ------------------------------------------------------------ consensus_14167#1 ------------------------------------------------------------ consensus_14167#3 ------------------------------------------------------------ consensus_14167#4 ------------------------------------------------------------ consensus_14167#0 GATGATGGAGATGAAGCTGTTGAAGAAGGTGATGAAGACCAGGCTGCTGATGCTTTGGCT 840 consensus_14167#2 ------------------------------------------------------------ consensus_14167#1 -----------------------------------AGTAGAACTGAACAAAAGAGCTCGT 25 consensus_14167#3 ------------------------------------------------------------ consensus_14167#4 ------------------------------------------------------------ consensus_14167#0 GTTCAGAGGAAAACTAAAACGAAAAGAGTTACAAGAGTAGAACTGAACAAAAGAGCTCGT 900 consensus_14167#2 --------------------------------CCCCTTCCCGCTCTCTCTCTCTCTCCCA 28 consensus_14167#1 CGTAAGGAGAGGTTAAGAGCAGAAGCTGAAGCAAAGAAGATGGAAAATCTTTCAAAGGAA 85 consensus_14167#3 CGTAAGGAGAGGCTAAGAGCAGAAGCTGAAGCAAAGAAGATGGAAAATCTTTCAAAGGAA 60 consensus_14167#4 ------------------------------------------------------------ consensus_14167#0 CGTAAGGAGAGGTTAAGAGCAGAAGCTGAAGCAAAGAAGATGGAAAATCTTTCAAAGGAA 960 consensus_14167#2 CGTGAGCGCGAGGCGGCGGCGGCGGCGGCGCGAGGTGAGCGGGGCACCAGCGGCGGCGGA 88 consensus_14167#1 ATAGATAGCCTGCCTGATATAATAAATGAAATTGCTAAAGAAGATGAGGAAAAGGAGAAA 145 consensus_14167#3 ATAGATAGCCTGCCTGATATAATAAATGAAATTGCTAAAGAAGATGAGGAAAAGGAGAAA 120 consensus_14167#4 ------------------------------------------------------------ consensus_14167#0 ATAGATAGCCTGCCTGATATAATAAATGAAATTGCTAAAGAAGATGAGGAAAAGGAGAAA 1020 consensus_14167#2 GGAGATGGGGAAGGCCTCGAAGGGGTCGCGGAGAGGGAAGAAGGCGTGGCGCGCCAACAT 148 consensus_14167#1 AGGCACATAAGGCGAACTGTGGCTAAACAGGAAAGACTGAAGTCAGCCCCGCCTCGTCTG 205 consensus_14167#3 AGGCACATAAGGCGAACTGTGGCTAAACAGGAAAGACTGAAGTCAGCCCCGCCTCGTCTG 180 consensus_14167#4 ------------------------------------------------------------ consensus_14167#0 AGGCACATAAGGCGAACTGTGGCTAAACAGGAAAGACTGAAGTCAGCCCCGCCTCGTCTG 1080 consensus_14167#2 CAGCACCGACGAC--ATCGAGGACTTCTTCGAGAAGCAGACGCGCGACGCGCA-CGCCGG 205 consensus_14167#1 GGCAGACACAAATTTGAACCAGCTCCTGTTCAAGTTCTATTAACAGAAGAGATTAGTGGC 265 consensus_14167#3 GGCAGACACAAATTTGAACCAGCTCCTGTTCAAGTTCTATTAACAGAAGAGATTAGTGGC 240 consensus_14167#4 ------------------------------------------------------------ consensus_14167#0 GGCAGACACAAATTTGAACCAGCTCCTGTTCAAGTTCTATTAACAGAAGAGATTAGTGGC 1140 consensus_14167#2 GGCCGCCGCCATCCCGTCCCTGCCCTCCGACTCCCTCTTCTTCGTCGACAAGCCGGCCTC 265 consensus_14167#1 TCTCTTAGAAAGCTGAAGGGGTGCTGTAATCTAGCAAGGGACCGATATAAGAGCATCGAG 325 consensus_14167#3 TCTCTTAGAAAGCTGAAGGGGTGCTGTAATCTAGCAAGGGACCGATATAAGAGCATCGAG 300 consensus_14167#4 ------------------------------------------------------------ consensus_14167#0 TCTCTTAGAAAGCTGAAGGGGTGCTGTAATCTAGCAAGGGACCGATATAAGAGCATCGAG 1200 consensus_14167#2 CGCCGCGTCCACCTCCTCCGCCGCCGACGCCGCCGCGGCGGATGCCGCCCCCAAAGATAT 325 consensus_14167#1 AAACGTGGAATACTTGCACCAAGCAGAAAAATAAGGAAG--CAACGCTAGAAATGCCACC 383 consensus_14167#3 AAACGTGGAATACTTGCACCAAGCAGAAAAATAAGGAAG--CAACGCTAGAAATGCCCCC 358 consensus_14167#4 ------------------------------------------------------------ consensus_14167#0 AAACGTGGAATACTTGCACCAAGCAGAAAAATAAGGAAG--CAACGCTAGAAATGCCACC 1258 consensus_14167#2 TCCTGTCAAA-AGGAAGATTGAGAAGAAGAGAGAGAAGGTTCTATATCATGAGAGTGTAT 384 consensus_14167#1 TGTGCATGTTCCAGTACAAATGA---------------GGAACATGGCGATCCCAGACGT 428 consensus_14167#3 TGTGCATGTTCCAGTCCAAATGA---------------GGAACATGGCGATCCCAGACGT 403 consensus_14167#4 ------------------------------------------------------------ consensus_14167#0 TGTGCATGTTCCAGTACAAATGATTCCAGTACAAATGAGGAACATGGCGATCCCAGACGT 1318 consensus_14167#2 TGAAGCGGAATCCATATATACAACCA------------GTCCCGTCTTCTTTAACGACAA 432 consensus_14167#1 GGAGCGTCTTGAACAACATCAAGGAACAGGCGCTGTGGAGGCATTGGAGAGCGCTCACAA 488 consensus_14167#3 GGAGCGTCTTGAACAACATCAAGGAACAGGCGCTGTGGAGGCATTGGAGAGCGCTCACAA 463 consensus_14167#4 ------------------------------------------------------------ consensus_14167#0 GGAGCGTCTTGAACAACATCAAGGAACAGGCGCTGTGGAGGCATTGGAGAGCGCTCACAA 1378 consensus_14167#2 AGAAGGATAAGAAGAAGTCAAAGAATAAGGAATCCAAAGAGACACAGGAAGCGAAAATTG 492 consensus_14167#1 GGCTATGGAAAATCGTACTCTTCAAACAGATCTGACGAAGCCAAAATTGCTTCGGAAGTT 548 consensus_14167#3 GGCTATGGAAAATCGTACTCTTCAAACAGATCTGACGAAGCCAAAATTGCTTCGGAAGTT 523 consensus_14167#4 ------------------------------------------------------------ consensus_14167#0 GGCTATGGAAAATCGTACTCTTCAAACAGATCTGACGAAGCCAAAATTGCTTCGGAAGTT 1438 consensus_14167#2 TTCCCATGGAAGATGATTCAGGTGATAAGATCCTTGACATTTGGGGTGAAAATGTTAAAG 552 consensus_14167#1 TAGACGGATAGTTTATTCTCTTTATATTCGAGTTTTTAATTGTTACAAGTTTTGTAGTG- 607 consensus_14167#3 TAGACGGATAGTTTATTCTCTTTATATTCGAGTTTTTAATTGTTACAAGTTTTGTAGTG- 582 consensus_14167#4 ---------------------------------------TTACCA-AGTTTTCGTAGTGA 20 consensus_14167#0 TAGACGGATAGTTTATTCTCTTTATATTCGAGTTTTTAATTGTTACAAGTTTTGTAGTG- 1497 consensus_14167#2 GAGACCACAAGGGCTAAAAGAGGTCTACCGCATCTGTGATTCCTGCTGTTGAAGTTGAGG 612 ** * ** * * consensus_14167#1 CCAGGGCAA-TGC-TCAAT----CGTTGAATTGTCCTCTGAATTGCCTGAGGCAAAGTTT 661 consensus_14167#3 CCAGGCCAA-TGC-TCAAT----CGTTGAATTGTCCTCTGAATTCCCTGAGGCAAAGTTT 636 consensus_14167#4 CCAGGGCAACTGCATCAATGCGACTGTGAATTGTCCTCTGAATTGCCTGAGGCAAAGTTT 80 consensus_14167#0 CCAGGGCAA-TGC-TNAAT----CGTTGAATTGTCCTCTNAATTGCCTGNGGCAA-GNTT 1550 consensus_14167#2 CCCCAGATGTTATTTTATCCCCCATTCGAAGCGACATA-GGATTTCTTGCT-CAAACTGT 670 ** * * * *** * * * *** * ** *** * consensus_14167#1 TGGAACGTCAAACTATAAATCTCTTATTATTGT-AAAC-TA--CTGTTC-TACTTGTTTA 716 consensus_14167#3 TGGAACGTCAAACTATAAATCTCTTATTATTGT-AAACATA--CTGTTC-TACTTGTTTA 692 consensus_14167#4 TGGAACGTCGAACTATAAATCTCTTATTATTGT-AAAC-TA--CTGTTC-TACTTGTTTA 135 consensus_14167#0 TGGNACGTNGAACTATAAATCTCTTATTATTGC-AAAC-TA--CTGTAC-TACTTGNTTA 1605 consensus_14167#2 TGTGATG-AGATTGCTAAATCTACCGAAAAAGTTAGGCCCAACCTGGCCATTATTGGCCT 729 ** * * * ******* * * * * * *** * * *** consensus_14167#1 TGTAAGATATGGCTCAATTTTACCATCTCTACAC-TGAAATTAGCTTCC-TATGTAATAT 774 consensus_14167#3 TGTAAGATATGGCTCAATTTTACCATCTCTCCAA-AAAGATTAGCTTCC-TATGTAATAT 750 consensus_14167#4 TGTANGATATGGCTCAATTTTNCCATCTCTGAAA-A------------------------ 170 consensus_14167#0 TGTAAGATATGGCTCA-TTTTACCATCTCTACACTGGAAATTAGCTTCCCTATGTAATAT 1664 consensus_14167#2 TGGGAGA-ATAACTGAAAAATAATTTTTTTGTTCCGTTATATAATAACTTTAA------- 781 ** ** ** ** * * * * * consensus_14167#1 ACCGTAAATACATAAACCCTATTGGCTTTAAAAAACTTAAAAGA 818 consensus_14167#3 GCCTTAAAT-------CCCT-----CTTAAAGGAA--------- 773 consensus_14167#4 -------------------------------------------- consensus_14167#0 GCCNTAAATACATAAAANCTATTGNC------------------ 1690 consensus_14167#2 -------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||