cluster # 14176

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Oryza sativa
cluster # 14176 cluster # 14176 Sequences # 15 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_14176#0 length = 1815 sequences # 11
consensus_14176#1 length = 451 sequences # 2

consensus_14176#2 length = 351 sequences # 1
consensus_14176#3 length = 313 sequences # 1

consensusID : consensus_14176#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 1815
fasta sequence

                              [CGCAGACGCGAGCGCAGCGCAAAAGATGGCGACGATGTCCCTCGCCGCGGCGTCCCCCCTCGCCTCGACTCCCCGTGGGCTCGCCGTCTCCACTCCCCGCACGGCCTTCCTCGGCCTCCTGACCGGAGGGGCGTCGCTGGCGCCGTTCCCGGGACTGGCGGCGGCGGCGGCG-CCGCCGCGGCTG-CCAGCGGGGAGGGGC-GACGCGGCCGTGGCCAGGATGGCGAAGAGGGAGCAGGAGCTGGAGGAGATTCGGGCCATGCCGACGGAGAAGATCGAGGAGGAAGTGGTGGACCTGAAGGGGGAGCTCTTCATGCTCCGCCTCAAGCGCTCCGCGCGCCAGGAGTTCAAATCCAGCGAGTTCGGCCGCATGCGCAAGAGGATTGCTCGTATGCTGACTGTCAAAAGAGAACGGGAAATTGAACAAGGAATCAACAAGAGATTGTCTAGGAAGCTTGACAGGAAATGGAAGCAAAGCATCGTGGTT-AGACCACCA-CCATCTCTAAGGGAGAACAAGGAGGAATAGAGAGCCACAAAAGCAGACAGTCTGTAGAAGTCATTTCATGCATGTCTTGAAGGAAGGTTTCTTTCTCCCTGTGGTTTCATTCCTTATAATGGATTGATATGTAATTCACATTAACTGATTTCCAAGTCCTTGCTGTCAAAACCAAAAGTTCTATTACCAATTCCATTTGTGTAAATTTCAGTTTATTCAAAATGTGTTGTCCATATATGCACTTATATTACTGATATATGAAACTGTGCTTAACGAGTGTATGCTATACACTTGTTGAAACTCAAACTGCCTATTCAAATTCACCTGTCACAAAGTTGTGGGTACGTACATACTATAAGAGGCAGATATGCAGAGTTCTAAAGAAGTGTCTCTGGAATACGGAGTAACAAAAACAAGAGAATTAGGCCATGTCTATAATAGTTCGCTTGGAATTTTGGTGCCCTGCTTTGCTCCAAACTCAAGTTCACTGTTTTATCAAACGTTTCAAAACTGTACAACTGTCTCCAAGCCCACGTTCTTGTGGCTTGTTGTGTCGGTCACCTAGATTTATGTTATTGTTCAACACTGATTTATGCTTAAACTAGCTCTGTTAGACTGTCCTAAAGCATGTTGGGCTTTCCCCTTCTACTCTAGCTTTAGAGTATGCTGCAGGTATCTCTGCACAGAGCTAGGGAGCCATCCTAGATCCATCATCAGTTTCATAAGCAAGCCCAGGTGGCTTGGCCCTTCAGCCAAAACTTGTTATTCTGATCTCTTCAACAGATCTTAACTTGAGATGTAGAGAGGCTTCACTCACAAGGTAATCTTTTAGTCAACTATTGTCTTCCTCTTTTTTTAGCTAATTGTTTAGTGAGCAGAGTACTGAGTTGGTGATTGTTTGAAGATAAATGCCAACAAGTAGAAATAGCATCCATGCAATTCTTTTGTTGAAAGTCTCAAGTCATCAAGGTCGAAGTGATGTTGCTGATAATTTGGTTGGGTAGATAAGAAATGAAATGAAGAGGATATCAGCCCCAGTTAATTGCAGCAATTTTATTTCAAACGCCATGCCTTGTCTTTGTTATGCCTTTTGGCACTGAGCCGCTGACTCTCTCACTGACAGGTGTGGTTCAGGCCCAATGCCACTGAGAGAAGCTAATGGCAAAATCTTAACTGCAACTTGAATCTATAGCAAGAACAAGATTTCCACTAGTTCAGTTTGTCCAGTGTTTTTCATGCCTTGAATAGGGTGGTGCATTCAATTACCCAAATTAGATTTGTTTCGCACGGACTAGTTGTGGTTTAAAATCTTCAGGATGAAT]

[+] EMBL AK068621             [CGCAGACGCGAGCGCAGCGCAAAAGATGGCGACGATGTCCCTCGCCGCGGCGTCCCCCCTCGCCTCGACTCCCCGTGGGCTCGCCGTCTCCACTCCCCGCACGGCCTTCCTCGGCCTCCTGACCGGAGGGGCGTCGCTGGCGCCGTTCCCGGGACTGGCGGCGGCGGCGGCG CCGCCGCGGCTG CCAGCGGGGAGGGGC GACGCGGCCGTGGCCAGGATGGCGAAGAGGGAGCAGGAGCTGGAGGAGATTCGGGCCATGCCGACGGAGAAGATCGAGGAGGAAGTGGTGGACCTGAAGGGGGAGCTCTTCATGCTCCGCCTCAAGCGCTCCGCGCGCCAGGAGTTCAAATCCAGCGAGTTCGGCCGCATGCGCAAGAGGATTGCTCGTATGCTGACTGTCAAAAGAGAACGGGAAATTGAACAAGGAATCAACAAGAGATTGTCTAGGAAGCTTGACAGGAAATGGAAGCAAAGCATCGTGGTT AGACCACCA CCATCTCTAAGGGAGAACAAGGAGGAATAGAGAGCCACAAAAGCAGACAGTCTGTAGAAGTCATTTCATGCATGTCTTGAAGGAAGGTTTCTTTCTCCCTGTGGTTTCATTCCTTATAATGGATTGATATGTAATTCACATTAACTGATTTCCAAGTCCTTGCTGTCAAAACCAAAAGTTCTATTACCAATTCCATTTGTGTAAATTTCAGTTTATTCAAAATGTGTTGTCCATATATGCACTTATATTACTGATATATGAAACTGTGCTTAACGAGTGTATGCTATACACTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AK059012             [ GCAGACGCGAGCGCAGCGCAAAAGATGGCGACGATGTCCCTCGCCGCGGCGTCCCCCCTCGCCTCGACTCCCCGTGGGCCCGCCGTCTCCACTCCCCGCACGGCCTTCCTCGGCCTCCTGACCGGAGGGGCGTCGCTGGCGCCGTTCCCGGGACTGGCGGCGGCGGCGGCG CCGCCGCGGCTG CCAGCGGGGAGGGGC GACGCGGCCGTGGCCAGGATGGCGAAGAGGGAGCAGGAGCTGGAGGAGATTCGGGCCATGCCGACGGAGAAGATCGAGGAGGAAGTGGTGGACCTGAAGGGGGAGCTCTTCATGCTCCGCCTCAAGCGCTCCGCGCGCCAGGAGTTCAAATCCAGCGAGTTCGGCCGCATGCGCAAGAGGATTGCTCGTATGCTGACTGTCAAAAGAGAACGGGAAATTGAACAAGGAATCAACAAGAGATTGTCTAGGAAGCTTGACAGGAAATGGAAGCAAAGCATCGTGGTT AGACCACCA CCATCTCTAAGGGAGAACAAGGAGGAATAGAGAGCCACGAAAGCAGACAGTCTGTAGAAGTCATTTCATGCATGTCTTGAAGGAAGGTTTCTTTCTCCCTGTGGTTTCATTCCTTATAATGGATTGATATGTAATTCACATTAACTGATTTCCAAGTCCTTGCTGTCAAAACCAAAAGTTCTATTACCAATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AK099805             [  CAGACGCGAGCGCAGCGCAAAAGATGGCGACGATGTCCCTCGCCGCGGCGTCCCCCCTCGCCTCGACTCCCCGTGGGCTCGCCGTCTCCACTCCCCGCACGGCCTTCCTCGGCCTCCTGACCGGAGGGGCGTCGCTGGCGCCGTTCCCGGGACTGGCGGCGGCGGCGGCG CCGCCGCGGCTG CCAGCGGGGAGGGGC GACGCGGCCGTGGCCAGGATGGCGAAGAGGGAGCAGGAGCTGGAGGAGATTCGGGCCATGCCGACGGAGAAGATCGAGGAGGAAGTGGTGGACCTGAAGGGGGAGCTCTTCATGCTCCGCCTCAAGCGCTCCGCGCGCCAGGAGTTCAAATCCAGCGAGTTCGGCCGCATGCGCAAGAGGATTGCTCGTATGCTGACTGTCAAAAGAGAACGGGAAATTGAACAAGGAATCAACAAGAGATTGTCTAGGAAGCTTGACAGGAAATGGAAGCAAAGCATCGTGGTT AGACCACCA CCATCTCTAAGGGAGAACAAGGAGGAATAGAGAGCCACAAAAGCAGACAGTCTGTAGAAGTCATTTCATGCATGTCTTGAAGGAAGGTTTCTTTCTCCCTGTGGTTTCATTCCTTATAATGGATTGATATGTAATTCACATTAACTGATTTCCAAGTCCTTGCTGTCAAAACCAAAAGTTCTATTACCAATTCCATTTGTGTAAATTTCAGTTTATTCAAAATGTGTTGTCCATATATGCACTTATATTACTGATATATGAAACTGTGCTTAACGAGTGTATGCTATACACTTGTTGAAACTCAAACTGCCTATTCAAATTCACCTGTCACAAAGTTGTGGGTACGTACATACTATAAGAGGCAGATATGCAGAGTTCTAAAGAAGTGTCTCTGGAATACGGAGTAACAAAAACAAGAGAATTAGGCCATGTCTATAATAGTTCGCTTGGAATTTTGGTGCCCTGCTTTGCTCCAAACTCAAGTTCACTGTTTTATCAAACGTTTCAAAACTGTACAACTGTCTCCAAGCCCACGTTCTTGTGGCTTGTTGTGTCGGTCACCTAGATTTATGTTATTGTTCAACACTGATTTATGCTTAAACTAGCTCTGTTAGACTGTCCTAAAGCATGTTGGGCTTTCCCCTTCTACTCTAGCTTTAGAGTATGCTGCAGGTATCTCTGCACAGAGCTAGGGAGCCATCCTAGATCCATCATCAGTTTCATAAGCAAGCCCAGGTGGCTTGGCCCTTCAGCCAAAACTTGTTATTCTGATCTCTTCAACAGATCTTAACTTGAGATGTAGAGAGGCTTCACTCACAAGGTAATCTTTTAGTCAACTATTGTCTTCCTCTTTTTTTAGCTAATTGTTTAGTGAGCAGAGTACTGAGTTGGTGATTGTTTGAAGATAAATGCCAACAAGTAGAAATAGCATCCATGCAATTCTTTTGTTGAAAGTCTCAAGTCATCAAGGTCGAAGTGATGTTGCTGATAATTTGGTTGGGTAGATAAGAAATGAAATGAAGAGGATATCAGCCCCAGTTAATTGCAGCAATTTTATTTCAAACGCCATGCCTTGTCTTTGTTATGCCTTTTGGCACTGAGCCGCTGACTCTCTCACTGACAGGTGTGGTTCAGGCCCAATGCCACTGAGAGAAGCTAATGGCAAAATCTTAACTGCAACTTGAATCTATAGCAAGAACAAGATTTCCACTAGTTCAGTTTGTCCAGTGTTTTTCATGCCTTGAATAGGGTGGTGCATTCAATTACCCAAATTAGATTTGTTTCGCACGGACTAGTTGTGGTTTAAAATCTTCAGGATGAAT]
[+] EMBL AU174066             [    GACGCGAGCGCAGCGCAAAAGATGGCGACGATGTCCCTCGCCGCGGCGTCCCCCCTCGCCTCGACTCCCCGTGGGCTCGCCGTCTCCACTCCCCGCACGGCCTTCCTCGGCCTCCTGACCGGAGGGGCGTCGCTGGCGCCGTTCCCGGGACTGGCGGCGGCGGCGGCG CCGCCGCGGNTG CCAGCGGGGAGGGGCTGACGCGGCCGTGGCCAGGATGGCGAATAGGGAGCAGGAGCTGGAGGAGATTCGGGCCATGCCGACGGAGAAGATCGAGGAGGAAGTGGTGGACCTGAAGGGGGAGCTCTTCATGCTCCGCCTNAAGCGCTCCGNGCGCCAGGAGTTCAAATCCAGCAAGTTCGGCCGNATGCGCAAGANGATTGCTCGTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CF326780             [          AGCGCAGCGCAAAAGATGGCGACGATGTCCCTCGCCGCGGCGTCCCCCCTCGCCTCGACTCCCCGTGGGCTCGCCGTCTCCACTCCCCGCACGGCCTTCCTCGGCCTCCTGACCGGAGGGGCGTCGCTGGCGCCGTTCCCGGGACTGGCGGCGGCGGCGGCGCCCGCC CGNCGGTCCAGCGGGGAGGGGC GACGCGGCCGTGGCCAGGATGGCGAAGAGGGAGCAGGAGCTGGAGGAGATTCGGGCCATGCCGACGGAGAAGATCGAGGAGGAAGTGGTGGACCTGAAGGGGGAGCTCTTCATGCTCCGCCTCAAGCGCTCCGCGCGCCAGGAGTTCAAATCCAGCGAGTTCGGCCGCATGCGCAAGAGGATTGCTCGTATGCTGACTGTCAAAAGAGAACGGGAAATTGAACAAGGAATCAACAAGAGATTGTCTAGGAAGCTTGACAGGAAATGGAAGCAAAGCATCGTGGTT AGACCACCA CCATCTCTAAGGGAGAACAAGGAGGAATAGAGAGCCACAAAAGCAGACAGTCTGTAGAAGTCATTTCATGCATGTCTTGAAGGAAGGTTTCTTTCTCCCTGTGGTTTCATTCCTTATAATGGATTGATATGTAATTCACATTAACTGATTTCCAAGTCCTTGCTGTCAAAACCAAAAGTTCTATTACCAATTCCATTTGTGTAAATTTCAGTTc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AU096976             [               AGCGCAAAAGATGGCGACGATGTCCCTCGCCGCGGCGTCCCCCCTCGCCTCGACTCCCCGTGGGCTCGCCGTCTCCACTCCCCGCACGGCCTTCCTCGGCCTCCTGACCGGAGGGGCGTCGCTGGCGCCGTTCCCGGGACTGGCGGCGGCGGCGGCG CCGCCGCGGCTG CCAGCGGGGAGGGGC GACGCGGCCGTGGCCAGGATGGCGAAGAGGGAGCAGGAGCTGGAGGAGATTCGGGCCATGCCGACGGAGAAGATCGAGGAGGAAGTGGTGGACCTGAAGGGGGAGCTCTTCATGCTCCGCCTCAAGCGCTCCGCGCGCCAGGAGTTCAAATCCAGCGAGTTCGGCCGCATGCGCAAGAGGATTGCTCGTATGCTGACTGTCAAAAGAGAACGGGAAATTGAACAAGGAATCAACAAGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AU198152             [               AGCGCAAAAGATGGCGACGATGTCCCTCGCCGCGGCGTCCCCCCTCGCCTCGACTCCCCGTGGGCTCGCCGTCTCCACTCCCCGCACGGCCTTCCTCGGCCTCCTGACCGGAGGGGCGTCGCTGGCGCCGTTCCCGGGACTGGCGGCGGCGGCGGCG CCGCCGCGGCTG CCAGCGGGGAGGGGC GACGCGGCCGTGGCCAGGATGGCGAAGAGGGAGCAGGAGCTGGAGGAGATTCGGGCCATGCCGACGGAGAAGATCGAGGAGGAAGTGGTGGACCTGAAGGGGGAGCTCTTCATGCTCCGCCTCAAGCGCTCCGCGCGCCAGGAGTTCAAATCCAGCGAGTTCGGCCGCATGCGCAAGAGGATTGCTCGTATGCTGACTGTCAAAAGAGAACGGGAAATTGAACAAGGAATCAACAAGAGATTGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CF325524             [                   CAAAAGATGGCGACGATGTCCCTCGCCGCGGCGTCCCCCCTCGCCTCGACTCCCCGTGGGCTCGCCGTCTCCACTCCCCGCACGGCCTTCCTCGGCCTCCTGACCGGAGGGGCGTCGCTGGCGCCGTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CF315080             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AAGCATCGTGGTT AGACCACCA CCATCTCTAAGGGAGAACAAGGAGGAATAGAGAGCCACAAAAGCAGACAGTCTGTAGAAGTCATTTCATGCATGTCTTGAAGGAAGGTTTCTTTCTCCCTGTGGTTTCATTCCTTATAATGGATTGATATGTAATTCACATTAACTGATTTCCAAGTCCTTGCTGTCAAAACCAAAAGTTCTATTACCAATTCCATTTGTGTAAATTTCAGTTTAAAAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AU096977             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         nggcCATCGTGGTT AGACCACCA CCATCTCTAAGGGAGACCAAGGAGGAATAGAGAGCCACAAAAGCAGACAGTCTGTAGAAGTCATTTCATGCATGTCTTGAAGGAAGGTTTCTTTCTCCCTGTGGTTTCATTCCTTATAATGGATTGATATGTAATTCACATTAACTGATTTCCAAGTCCTTGCTGTCAAAACCAAAAGTTCTATTACCAATTCCATTTGTGTAAATTTCAGTTTATTCAAAATGTGTTGTCCATATATGCACTTATATTACTGATATATGAAACTGTGCTTAACGAGTGTATGCTATACACTTGTTGAAACTCAAAaaa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CF315081             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         agctatTCGTGGTTNAGACCACCANCCATCTCTAAGGGAGAACAAGGAGGAATAGAGAGCCACAAAAGCAGACAGTCTGTAGAAGTCATTTCATGCATGTCTTGAAGGAAGGTTTCTTTCTCCCTGTGGTTTCATTCCTTATAATGGATTGATATGTAATTCACATTAACTGATTTCCAAGTCCTTGCTGTCAAAACCAAAAGTTCTATTACCAATTCCATTTGTGTAAATTTCAGTTTAAAAAAAAa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]




>consensus_14176#0
CGCAGACGCGAGCGCAGCGCAAAAGATGGCGACGATGTCCCTCGCCGCGGCGTCCCCCCT
CGCCTCGACTCCCCGTGGGCTCGCCGTCTCCACTCCCCGCACGGCCTTCCTCGGCCTCCT
GACCGGAGGGGCGTCGCTGGCGCCGTTCCCGGGACTGGCGGCGGCGGCGGCGCCGCCGCG
GCTGCCAGCGGGGAGGGGCGACGCGGCCGTGGCCAGGATGGCGAAGAGGGAGCAGGAGCT
GGAGGAGATTCGGGCCATGCCGACGGAGAAGATCGAGGAGGAAGTGGTGGACCTGAAGGG
GGAGCTCTTCATGCTCCGCCTCAAGCGCTCCGCGCGCCAGGAGTTCAAATCCAGCGAGTT
CGGCCGCATGCGCAAGAGGATTGCTCGTATGCTGACTGTCAAAAGAGAACGGGAAATTGA
ACAAGGAATCAACAAGAGATTGTCTAGGAAGCTTGACAGGAAATGGAAGCAAAGCATCGT
GGTTAGACCACCACCATCTCTAAGGGAGAACAAGGAGGAATAGAGAGCCACAAAAGCAGA
CAGTCTGTAGAAGTCATTTCATGCATGTCTTGAAGGAAGGTTTCTTTCTCCCTGTGGTTT
CATTCCTTATAATGGATTGATATGTAATTCACATTAACTGATTTCCAAGTCCTTGCTGTC
AAAACCAAAAGTTCTATTACCAATTCCATTTGTGTAAATTTCAGTTTATTCAAAATGTGT
TGTCCATATATGCACTTATATTACTGATATATGAAACTGTGCTTAACGAGTGTATGCTAT
ACACTTGTTGAAACTCAAACTGCCTATTCAAATTCACCTGTCACAAAGTTGTGGGTACGT
ACATACTATAAGAGGCAGATATGCAGAGTTCTAAAGAAGTGTCTCTGGAATACGGAGTAA
CAAAAACAAGAGAATTAGGCCATGTCTATAATAGTTCGCTTGGAATTTTGGTGCCCTGCT
TTGCTCCAAACTCAAGTTCACTGTTTTATCAAACGTTTCAAAACTGTACAACTGTCTCCA
AGCCCACGTTCTTGTGGCTTGTTGTGTCGGTCACCTAGATTTATGTTATTGTTCAACACT
GATTTATGCTTAAACTAGCTCTGTTAGACTGTCCTAAAGCATGTTGGGCTTTCCCCTTCT
ACTCTAGCTTTAGAGTATGCTGCAGGTATCTCTGCACAGAGCTAGGGAGCCATCCTAGAT
CCATCATCAGTTTCATAAGCAAGCCCAGGTGGCTTGGCCCTTCAGCCAAAACTTGTTATT
CTGATCTCTTCAACAGATCTTAACTTGAGATGTAGAGAGGCTTCACTCACAAGGTAATCT
TTTAGTCAACTATTGTCTTCCTCTTTTTTTAGCTAATTGTTTAGTGAGCAGAGTACTGAG
TTGGTGATTGTTTGAAGATAAATGCCAACAAGTAGAAATAGCATCCATGCAATTCTTTTG
TTGAAAGTCTCAAGTCATCAAGGTCGAAGTGATGTTGCTGATAATTTGGTTGGGTAGATA
AGAAATGAAATGAAGAGGATATCAGCCCCAGTTAATTGCAGCAATTTTATTTCAAACGCC
ATGCCTTGTCTTTGTTATGCCTTTTGGCACTGAGCCGCTGACTCTCTCACTGACAGGTGT
GGTTCAGGCCCAATGCCACTGAGAGAAGCTAATGGCAAAATCTTAACTGCAACTTGAATC
TATAGCAAGAACAAGATTTCCACTAGTTCAGTTTGTCCAGTGTTTTTCATGCCTTGAATA
GGGTGGTGCATTCAATTACCCAAATTAGATTTGTTTCGCACGGACTAGTTGTGGTTTAAA
ATCTTCAGGATGAAT

consensusID : consensus_14176#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 451
fasta sequence

                              [AAAANAGAACGGGAAATTNAACAAGGAATCANCAAGAGATTGTNTAGGAAGCTTNACAGGAAATGGAAGCAAAGCATCGTGGTTAGACCCCCCCCATNTTTAAGGGAGAACAAGGAGGAATAGAGAGCCCCAAAAGCAGACAGTNTGTAGAAGTCNTTTCATGCATGTNTTGAAGGAAGGTTTCTTTCTCCCTGTGGTTTCATTCCTTATAATGGATTGATATGTAATTCCCATTAACTGATTTCCAAGTCCTTGCTGTCAAAACCNAAAGTTNTATTACCAATTCCNTTTGTGTAAATTTCAGTTTATTCAAAATGTGTTGTCCATATATGCNCTTATATTACTGATATATGAAACTGTGCTTAACGAGTGTATGCTATACNCTTGTTGAAACTCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCATGCCGT]

[+] EMBL AU174067             [AAAANAGAACGGGAAATTNAACAAGGAATCANCAAGAGATTGTNTAGGAAGCTTNACAGGAAATGGAAGCAAAGCATCGTGGTTAGACCCCCCCCATNTTTAAGGGAGAACAAGGAGGAATAGAGAGCCCCAAAAGCAGACAGTNTGTAGAAGTCNTTTCATGCATGTNTTGAAGGAAGGTTTCTTTCTCCCTGTGGTTTCATTCCTTATAATGGATTGATATGTAATTCCCATTAACTGATTTCCAAGTCCTTGCTGTCAAAACCNAAAGTTNTATTACCAATTCCNTTTGTGTAAATTTCAGTTTATTCAAAATGTGTTGTCCATATATGCNCTTATATTACTGATATATGAAACTGTGCTTAACGAGTGTATGCTATACNCTTGTTGAAACTCNAAAAAAAAAAAAAAAAAAAAA                                 ]
[+] EMBL CF311804             [                                                                                            aCCATCTCTAAGGGAGAACAAGGAGGAATAGAGAGCCACAAAAGCAGACAGTCTGTAGAAGTCATTTCATGCATGTCTTGAAGGAAGGTTTCTTTCTCCCTGTGGTTTCATTCCTTATAATGGATTGATATGTAATTCACATTAACTGATTTCCAAGTCCTTGCTGTCAAAACCAAAAGTTCTATTACCAATTCCATTTGTGTAAATTTCAGTTTATTCAAAATGTGTTGTCCATATACGCACTTATATTACTGATATATGAAACTGTGCTTAACGAGTGTATGCTATACACTTGTTAAAACTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCATGCCGT]




>consensus_14176#1
AAAANAGAACGGGAAATTNAACAAGGAATCANCAAGAGATTGTNTAGGAAGCTTNACAGG
AAATGGAAGCAAAGCATCGTGGTTAGACCCCCCCCATNTTTAAGGGAGAACAAGGAGGAA
TAGAGAGCCCCAAAAGCAGACAGTNTGTAGAAGTCNTTTCATGCATGTNTTGAAGGAAGG
TTTCTTTCTCCCTGTGGTTTCATTCCTTATAATGGATTGATATGTAATTCCCATTAACTG
ATTTCCAAGTCCTTGCTGTCAAAACCNAAAGTTNTATTACCAATTCCNTTTGTGTAAATT
TCAGTTTATTCAAAATGTGTTGTCCATATATGCNCTTATATTACTGATATATGAAACTGT
GCTTAACGAGTGTATGCTATACNCTTGTTGAAACTCNAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAACCCCTGTCATGCCGT

consensusID : consensus_14176#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 351
fasta sequence

                              [GGAGTAGAAAAGCCCCCCCCCTTTTTTAAGGGAGACCAAGGAGGAATAGAGACCCCCAAAAGCAGCCAGTTTGTAGAAGTCATTTCATGCATGTTTTGAAGGAAGGTTTCTTTCTCCCTGTGGTTTCATTCCTTATAATGGATTGATATGTAATTCCCATTAATTGATTTCCAAGTCCTTGCTGTCAAACCCAAAAGTTTTATTCCCAATTCCATTTGTGTAAATTTCAGTTTATTCAAAATGTGTTGTCCATATACGCACTTATATTACTGATATATGAAACTGTGTTTAACGAGTGTATGTTATACACTTGTTAAAACTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CF311803             [GGAGTAGAAAAGCCCCCCCCCTTTTTTAAGGGAGACCAAGGAGGAATAGAGACCCCCAAAAGCAGCCAGTTTGTAGAAGTCATTTCATGCATGTTTTGAAGGAAGGTTTCTTTCTCCCTGTGGTTTCATTCCTTATAATGGATTGATATGTAATTCCCATTAATTGATTTCCAAGTCCTTGCTGTCAAACCCAAAAGTTTTATTCCCAATTCCATTTGTGTAAATTTCAGTTTATTCAAAATGTGTTGTCCATATACGCACTTATATTACTGATATATGAAACTGTGTTTAACGAGTGTATGTTATACACTTGTTAAAACTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_14176#2
GGAGTAGAAAAGCCCCCCCCCTTTTTTAAGGGAGACCAAGGAGGAATAGAGACCCCCAAA
AGCAGCCAGTTTGTAGAAGTCATTTCATGCATGTTTTGAAGGAAGGTTTCTTTCTCCCTG
TGGTTTCATTCCTTATAATGGATTGATATGTAATTCCCATTAATTGATTTCCAAGTCCTT
GCTGTCAAACCCAAAAGTTTTATTCCCAATTCCATTTGTGTAAATTTCAGTTTATTCAAA
ATGTGTTGTCCATATACGCACTTATATTACTGATATATGAAACTGTGTTTAACGAGTGTA
TGTTATACACTTGTTAAAACTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_14176#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 313
fasta sequence

                              [AGGAATCAACAANAGATTGTTTAGGAAGCTTGACAGGAAATGGAAGCAAAGCATNGTGGTTAGACCCCCCCCNTNTTTAAGGGAGAACAAGGAGGAATAGAGAGCCCCAAAAGCAGACAGTNTGTAGAAGTCATTTCATGCATGTNTTGAAGGAAGGTTTNTTTNTCCCTGNGGNTTCATTCCTTATAATGGATTGATATGTAATTCCCATTAACTGATTTNCAAGTCCNTGCTGTCAAAACCAAAAGTTTTATTACCAATTCCNTTTGNGTAAATTTCAGTTTTTTCNAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU198153             [AGGAATCAACAANAGATTGTTTAGGAAGCTTGACAGGAAATGGAAGCAAAGCATNGTGGTTAGACCCCCCCCNTNTTTAAGGGAGAACAAGGAGGAATAGAGAGCCCCAAAAGCAGACAGTNTGTAGAAGTCATTTCATGCATGTNTTGAAGGAAGGTTTNTTTNTCCCTGNGGNTTCATTCCTTATAATGGATTGATATGTAATTCCCATTAACTGATTTNCAAGTCCNTGCTGTCAAAACCAAAAGTTTTATTACCAATTCCNTTTGNGTAAATTTCAGTTTTTTCNAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_14176#3
AGGAATCAACAANAGATTGTTTAGGAAGCTTGACAGGAAATGGAAGCAAAGCATNGTGGT
TAGACCCCCCCCNTNTTTAAGGGAGAACAAGGAGGAATAGAGAGCCCCAAAAGCAGACAG
TNTGTAGAAGTCATTTCATGCATGTNTTGAAGGAAGGTTTNTTTNTCCCTGNGGNTTCAT
TCCTTATAATGGATTGATATGTAATTCCCATTAACTGATTTNCAAGTCCNTGCTGTCAAA
ACCAAAAGTTTTATTACCAATTCCNTTTGNGTAAATTTCAGTTTTTTCNAAAAAAAAAAA
AAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14176#0      CGCAGACGCGAGCGCAGCGCAAAAGATGGCGACGATGTCCCTCGCCGCGGCGTCCCCCCT 60
consensus_14176#3      ------------------------------------------------------------
consensus_14176#1      ------------------------------------------------------------
consensus_14176#2      ------------------------------------------------------------
                                                                                   

consensus_14176#0      CGCCTCGACTCCCCGTGGGCTCGCCGTCTCCACTCCCCGCACGGCCTTCCTCGGCCTCCT 120
consensus_14176#3      ------------------------------------------------------------
consensus_14176#1      ------------------------------------------------------------
consensus_14176#2      ------------------------------------------------------------
                                                                                   

consensus_14176#0      GACCGGAGGGGCGTCGCTGGCGCCGTTCCCGGGACTGGCGGCGGCGGCGGCGCCGCCGCG 180
consensus_14176#3      ------------------------------------------------------------
consensus_14176#1      ------------------------------------------------------------
consensus_14176#2      ------------------------------------------------------------
                                                                                   

consensus_14176#0      GCTGCCAGCGGGGAGGGGCGACGCGGCCGTGGCCAGGATGGCGAAGAGGGAGCAGGAGCT 240
consensus_14176#3      ------------------------------------------------------------
consensus_14176#1      ------------------------------------------------------------
consensus_14176#2      ------------------------------------------------------------
                                                                                   

consensus_14176#0      GGAGGAGATTCGGGCCATGCCGACGGAGAAGATCGAGGAGGAAGTGGTGGACCTGAAGGG 300
consensus_14176#3      ------------------------------------------------------------
consensus_14176#1      ------------------------------------------------------------
consensus_14176#2      ------------------------------------------------------------
                                                                                   

consensus_14176#0      GGAGCTCTTCATGCTCCGCCTCAAGCGCTCCGCGCGCCAGGAGTTCAAATCCAGCGAGTT 360
consensus_14176#3      ------------------------------------------------------------
consensus_14176#1      ------------------------------------------------------------
consensus_14176#2      ------------------------------------------------------------
                                                                                   

consensus_14176#0      CGGCCGCATGCGCAAGAGGATTGCTCGTATGCTGACTGTCAAAAGAGAACGGGAAATTGA 420
consensus_14176#3      ------------------------------------------------------------
consensus_14176#1      ----------------------------------------AAAANAGAACGGGAAATTNA 20
consensus_14176#2      ------------------------------------------------------------
                                                                                   

consensus_14176#0      ACAAGGAATCAACAAGAGATTGTCTAGGAAGCTTGACAGGAAATGGAAGCAAAGCATCGT 480
consensus_14176#3      ---AGGAATCAACAANAGATTGTTTAGGAAGCTTGACAGGAAATGGAAGCAAAGCATNGT 57
consensus_14176#1      ACAAGGAATCANCAAGAGATTGTNTAGGAAGCTTNACAGGAAATGGAAGCAAAGCATCGT 80
consensus_14176#2      --------------------------------------------------GGAGTA---- 6
                                                                           ** *    

consensus_14176#0      GGTTAGACCACCACCATCTCTAAGGGAGAACAAGGAGGAATAGAGAGCCACAAAAGCAGA 540
consensus_14176#3      GGTTAGACCCCCCCCNTNTTTAAGGGAGAACAAGGAGGAATAGAGAGCCCCAAAAGCAGA 117
consensus_14176#1      GGTTAGACCCCCCCCATNTTTAAGGGAGAACAAGGAGGAATAGAGAGCCCCAAAAGCAGA 140
consensus_14176#2      GAAAAGCCCCCCCCCTTTTTTAAGGGAGACCAAGGAGGAATAGAGACCCCCAAAAGCAGC 66
                       *   ** ** ** ** * * ********* **************** ** ********* 

consensus_14176#0      CAGTCTGTAGAAGTCATTTCATGCATGTCTTGAAGGAAGGTTTCTTTCTCCCTGTGGTTT 600
consensus_14176#3      CAGTNTGTAGAAGTCATTTCATGCATGTNTTGAAGGAAGGTTTNTTTNTCCCTGNGGNTT 177
consensus_14176#1      CAGTNTGTAGAAGTCNTTTCATGCATGTNTTGAAGGAAGGTTTCTTTCTCCCTGTGGTTT 200
consensus_14176#2      CAGTTTGTAGAAGTCATTTCATGCATGTTTTGAAGGAAGGTTTCTTTCTCCCTGTGGTTT 126
                       **** ********** ************ ************** *** ****** ** **

consensus_14176#0      CATTCCTTATAATGGATTGATATGTAATTCACATTAACTGATTTCCAAGTCCTTGCTGTC 660
consensus_14176#3      CATTCCTTATAATGGATTGATATGTAATTCCCATTAACTGATTTNCAAGTCCNTGCTGTC 237
consensus_14176#1      CATTCCTTATAATGGATTGATATGTAATTCCCATTAACTGATTTCCAAGTCCTTGCTGTC 260
consensus_14176#2      CATTCCTTATAATGGATTGATATGTAATTCCCATTAATTGATTTCCAAGTCCTTGCTGTC 186
                       ****************************** ****** ****** ******* *******

consensus_14176#0      AAAACCAAAAGTTCTATTACCAATTCCATTTGTGTAAATTTCAGTTTATTCAAAATGTGT 720
consensus_14176#3      AAAACCAAAAGTTTTATTACCAATTCCNTTTGNGTAAATTTCAGTTTTTTCNAAAAAAAA 297
consensus_14176#1      AAAACCNAAAGTTNTATTACCAATTCCNTTTGTGTAAATTTCAGTTTATTCAAAATGTGT 320
consensus_14176#2      AAACCCAAAAGTTTTATTCCCAATTCCATTTGTGTAAATTTCAGTTTATTCAAAATGTGT 246
                       *** ** ****** **** ******** **** ************** *** ***     

consensus_14176#0      TGTCCATATATGCACTTATATTACTGATATATGAAACTGTGCTTAACGAGTGTATGCTAT 780
consensus_14176#3      AAAAAAAAAAAAAAAA-------------------------------------------- 313
consensus_14176#1      TGTCCATATATGCNCTTATATTACTGATATATGAAACTGTGCTTAACGAGTGTATGCTAT 380
consensus_14176#2      TGTCCATATACGCACTTATATTACTGATATATGAAACTGTGTTTAACGAGTGTATGTTAT 306
                            * * *                                                  

consensus_14176#0      ACACTTGTTGAAACTCAAACTGCCTATTCAAATTCACCTGTCACAAAGTTGTGGGTACGT 840
consensus_14176#3      ------------------------------------------------------------
consensus_14176#1      ACNCTTGTTGAAACTCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCC 440
consensus_14176#2      ACACTTGTTAAAACTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--------------- 351
                                                                                   

consensus_14176#0      ACATACTATAAGAGGCAGATATGCAGAGTTCTAAAGAAGTGTCTCTGGAATACGGAGTAA 900
consensus_14176#3      ------------------------------------------------------------
consensus_14176#1      TGTCATGCCGT------------------------------------------------- 451
consensus_14176#2      ------------------------------------------------------------
                                                                                   

consensus_14176#0      CAAAAACAAGAGAATTAGGCCATGTCTATAATAGTTCGCTTGGAATTTTGGTGCCCTGCT 960
consensus_14176#3      ------------------------------------------------------------
consensus_14176#1      ------------------------------------------------------------
consensus_14176#2      ------------------------------------------------------------
                                                                                   

consensus_14176#0      TTGCTCCAAACTCAAGTTCACTGTTTTATCAAACGTTTCAAAACTGTACAACTGTCTCCA 1020
consensus_14176#3      ------------------------------------------------------------
consensus_14176#1      ------------------------------------------------------------
consensus_14176#2      ------------------------------------------------------------
                                                                                   

consensus_14176#0      AGCCCACGTTCTTGTGGCTTGTTGTGTCGGTCACCTAGATTTATGTTATTGTTCAACACT 1080
consensus_14176#3      ------------------------------------------------------------
consensus_14176#1      ------------------------------------------------------------
consensus_14176#2      ------------------------------------------------------------
                                                                                   

consensus_14176#0      GATTTATGCTTAAACTAGCTCTGTTAGACTGTCCTAAAGCATGTTGGGCTTTCCCCTTCT 1140
consensus_14176#3      ------------------------------------------------------------
consensus_14176#1      ------------------------------------------------------------
consensus_14176#2      ------------------------------------------------------------
                                                                                   

consensus_14176#0      ACTCTAGCTTTAGAGTATGCTGCAGGTATCTCTGCACAGAGCTAGGGAGCCATCCTAGAT 1200
consensus_14176#3      ------------------------------------------------------------
consensus_14176#1      ------------------------------------------------------------
consensus_14176#2      ------------------------------------------------------------
                                                                                   

consensus_14176#0      CCATCATCAGTTTCATAAGCAAGCCCAGGTGGCTTGGCCCTTCAGCCAAAACTTGTTATT 1260
consensus_14176#3      ------------------------------------------------------------
consensus_14176#1      ------------------------------------------------------------
consensus_14176#2      ------------------------------------------------------------
                                                                                   

consensus_14176#0      CTGATCTCTTCAACAGATCTTAACTTGAGATGTAGAGAGGCTTCACTCACAAGGTAATCT 1320
consensus_14176#3      ------------------------------------------------------------
consensus_14176#1      ------------------------------------------------------------
consensus_14176#2      ------------------------------------------------------------
                                                                                   

consensus_14176#0      TTTAGTCAACTATTGTCTTCCTCTTTTTTTAGCTAATTGTTTAGTGAGCAGAGTACTGAG 1380
consensus_14176#3      ------------------------------------------------------------
consensus_14176#1      ------------------------------------------------------------
consensus_14176#2      ------------------------------------------------------------
                                                                                   

consensus_14176#0      TTGGTGATTGTTTGAAGATAAATGCCAACAAGTAGAAATAGCATCCATGCAATTCTTTTG 1440
consensus_14176#3      ------------------------------------------------------------
consensus_14176#1      ------------------------------------------------------------
consensus_14176#2      ------------------------------------------------------------
                                                                                   

consensus_14176#0      TTGAAAGTCTCAAGTCATCAAGGTCGAAGTGATGTTGCTGATAATTTGGTTGGGTAGATA 1500
consensus_14176#3      ------------------------------------------------------------
consensus_14176#1      ------------------------------------------------------------
consensus_14176#2      ------------------------------------------------------------
                                                                                   

consensus_14176#0      AGAAATGAAATGAAGAGGATATCAGCCCCAGTTAATTGCAGCAATTTTATTTCAAACGCC 1560
consensus_14176#3      ------------------------------------------------------------
consensus_14176#1      ------------------------------------------------------------
consensus_14176#2      ------------------------------------------------------------
                                                                                   

consensus_14176#0      ATGCCTTGTCTTTGTTATGCCTTTTGGCACTGAGCCGCTGACTCTCTCACTGACAGGTGT 1620
consensus_14176#3      ------------------------------------------------------------
consensus_14176#1      ------------------------------------------------------------
consensus_14176#2      ------------------------------------------------------------
                                                                                   

consensus_14176#0      GGTTCAGGCCCAATGCCACTGAGAGAAGCTAATGGCAAAATCTTAACTGCAACTTGAATC 1680
consensus_14176#3      ------------------------------------------------------------
consensus_14176#1      ------------------------------------------------------------
consensus_14176#2      ------------------------------------------------------------
                                                                                   

consensus_14176#0      TATAGCAAGAACAAGATTTCCACTAGTTCAGTTTGTCCAGTGTTTTTCATGCCTTGAATA 1740
consensus_14176#3      ------------------------------------------------------------
consensus_14176#1      ------------------------------------------------------------
consensus_14176#2      ------------------------------------------------------------
                                                                                   

consensus_14176#0      GGGTGGTGCATTCAATTACCCAAATTAGATTTGTTTCGCACGGACTAGTTGTGGTTTAAA 1800
consensus_14176#3      ------------------------------------------------------------
consensus_14176#1      ------------------------------------------------------------
consensus_14176#2      ------------------------------------------------------------
                                                                                   

consensus_14176#0      ATCTTCAGGATGAAT 1815
consensus_14176#3      ---------------
consensus_14176#1      ---------------
consensus_14176#2      ---------------