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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14179#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1117 fasta sequence
[GATCTCGATCTCTTGGACTCTGCCGGCGCCGGCGTTGGTAGGGTAGCCATGGCGGAGGAGGCCACCCTGAGCCACCCGTCGCGGTACGTGAAGCTGAGCAGGGAGCACGACGCCCCCGCCCCCGCCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTCCACGTCCCGCAGCTCGAGGGCAGGAGGTGCAGCGAGTGCGGCCAGGTCCTGCCGGAATCCTACGAGCCCCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGCCTGCACCGACGATCCACAAACCTGCCGAACTGGGTTGTTCTGTCCTTGTGTTCTTTTTGGACGCAATATTGAGGCCCTCAGAGAGGATATCCCTTGGACAACGCCTTGTGTTTGCCATGCTGTCTTTGTTGAAGGAGGGATTGCGCTTGCAATTCTCACCGCAATATTTCATGGTGTTGATCCCAGAACGTCTTTCCTGATTGGAGAAGGTTTGGTGTTCAGCTGGTGGTTGTGTGGTACTTATACGGGCATCTTTCGCCAAGAACTTCAGAGGAAATACCATCTCAAGAATTCTCCATGTGACCCTTGCATGGTCCATTGCTGCTTGCACTGGTGCGCGAATTGTCAGGAGCACCGTGAAAGGACGGGGCGGCTTGCAGAGAACAGCGCGGTGCCAATGACCGTTGTGAATCCACCTGCAGTGCAAGAGATGAGCATGGCAGAAAGCCGTGGTCCTGTTTCCCCCGGTATGGAGAACGGAGCACCATCAAACTCAAAGGGTGAGCAT-GAGGAACCCAAGAGTGATC-ACGATGATGTGGAGGTGATACCTCTATAGGGTGAATGAAAGAAAGATATTCTTTCTGATAATAGGATAGCAA-GAGGAATGAATCGATGTGACGAATTCATGGACGC-TTGGCGACGATGTTCTTGTGTCATCTGGAACTGGAATCATCATAAAACACACAGGGTGATACTCTTTC-TTTTTTTTTTGTACTAGTATTAAAACTTCAAATATAATTAACTGGAGAGCAGGGGCTGCCTGAGTACATTGCTACGTTTCTGCATCCACCGGCCGTGTGTTGTTTATGCCATCATGTAAAATTCATTCTTGATTTTAAAAAAAAAAAAAA]
[+] EMBL BE039961 [GATCTCGATCTCTTGGACTCTGCCGGCGCCGGCGTTGGTAGGGTAGCCATGGCGGAGGAGGCCACCCTGAGCCACCCGTCGCGGTACGTGAAGCTGAGCAGGGAGCACGACGCCCCCGCCCCCGCCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTCCACGTCCCGCAGCTCGAGGGCAGGAGGTGCAGCGAGTGCGGCCAGGTCCTGCCGGAATCCTACGAGCCCCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGCCTGCACCGACGATCCACAAACCTGCCGAACTGGGTTGTTCTGTCCTTGTGTTCTTTTTGGACGCAATATTGAGGCCCTCAGAGAGGATATCCCTTGGACAACGCCTTGTGTTTGCCATGCTGTCTTTGTTGAAGGAGGGATTGCGCTTGCAATTCTCACCGCAATATTTCATGGTGTTGATCCCAGAACGTCTTTCCTGATTGGAGAAGGTTTGGTGTTCAGCTGGTGGTTGTGTGGTACTTATACGGGCATCTTTCGCCAAGAACTTCAGAGGAAATACCATCTCAAGAATTCTCCATGTGACCCTNGCATGGTCCATTGCTGCTTGCACTGGTGCGCGAATNGTCAGGAGCACCGTGAAAGGACGGTGCGGCTNGCAAAGAACAGCGCGGTGCCAATGACCGTTGTGATTCCACCTGCAGTGCAAGAGATGAACATGGCAGAAAGCCGTGGTCCTGTTTTCCCCGGTATGGAGAACGAGGCACCATAAAACT TAAGGGTGAGCATGGAGGAACCCAA AGTGATCAACCATGATGTTGAGG GA ACCCTTTTATGGTGAATGAAAGAAAGA ATTCTTTCTGTTAATTGGAT GCAAGGAGG ATGAAATG TTTGGCGAAATAATTGGCGCTTTGGGAACAAT TTTTTGT ]
[+] EMBL AK103196 [ GGACTCTGCCGGCGCCGGCGTTGGTAGGGTAGCCATGGCGGAGGAGGCCACCCTGAGCCACCCGTCGCGGTACGTGAAGCTGAGCAGGGAGCACGACGCCCCCGCCCCCGCCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTCCACGTCCCGCAGCTCGAGGGCAGGAGGTGCAGCGAGTGCGGCCAGGTCCTGCCGGAATCCTACGAGCCCCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGCCTGCACCGACGATCCACAAACCTGCCGAACTGGGTTGTTCTGTCCTTGTGTTCTTTTTGGACGCAATATTGAGGCCCTCAGAGAGGATATCCCTTGGACAACGCCTTGTGTTTGCCATGCTGTCTTTGTTGAAGGAGGGATTGCGCTTGCAATTCTCACCGCAATATTTCATGGTGTTGATCCCAGAACGTCTTTCCTGATTGGAGAAGGTTTGGTGTTCAGCTGGTGGTTGTGTGGTACTTATACGGGCATCTTTCGCCAAGAACTTCAGAGGAAATACCATCTCAAGAATTCTCCATGTGACCCTTGCATGGTCCATTGCTGCTTGCACTGGTGCGCGAATTGTCAGGAGCACCGTGAAAGGACGGGGCGGCTTGCAGAGAACAGCGCGGTGCCAATGACCGTTGTGAATCCACCTGCAGTGCAAGAGATGAGCATGGCAGAAAGCCGTGGTCCTGTTTCCCCCGGTATGGAGAACGGAGCACCATCAAACTCAAAGGGTGAGCAT GAGGAACCCAAGAGTGATC ACGATGATGTGGAGGTGATACCTCTATAGGGTGAATGAAAGAAAGATATTCTTTCTGATAATAGGATAGCAA GAGGAATGAATCGATGTGACGAATTCATGGACGC TTGGCGACGATGTTCTTGTGTCATCTGGAACTGGAATCATCATAAAACACACAGGGTGATACTCTTTC TTTTTTTTTGTACTAGTATTAAAACTTCAAATATAATTAACTGGAGAGCAGGGGCTGCCTGAGTACATTGCTACGT ]
[+] EMBL AK061092 [ ACTCTGCCGGCGCCGGCGTTGGTAGGGTAGCCATGGCGGAGGAGGCCACCCTGAGCCACCCGTCGCGGTACGTGAAGCTGAGCAGGGAGCACGACGCCCCCGCCCCCGCCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTCCACGTCCCGCAGCTCGAGGGCAGGAGGTGCAGCGAGTGCGGCCAGGTCCTGCCGGAATCCTACGAGCCCCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGCCTGCACCGACGATCCACAAACCTGCCGAACTGGGTTGTTCTGTCCTTGTGTTCTTTTTGGACGCAATATTGAGGCCCTCAGAGAGGATATCCCTTGGACAACGCCTTGTGTTTGCCATGCTGTCTTTGTTGAAGGAGGGATTGCGCTTGCAATTCTCACCGCAATATTTCATGGTGTTGATCCCAGAACGTCTTTCCTGATTGGAGAAGGTTTGGTGTTCAGCTGGTGGTTGTGTGGTACTTATACGGGCATCTTTCGCCAAGAACTTCAGAGGAAATACCATCTCAAGAATTCTCCATGTGACCCTTGCATGGTCCATTGCTGCTTGCACTGGTGCGCGAATTGTCAGGAGCACCGTGAAAGGACGGGGCGGCTTGCAGAGAACAGCGCGGTGCCAATGACCGTTGTGAATCCACCTGCAGTGCAAGAGATGAGCATGGCAGAAAGCCGTGGTCCTGTTTCCCCCGGTATGGAGAACGGAGCACCATCAAACTCAAAGGGTGAGCAT GAGGAACCCAAGAGTGATC ACGATGATGTGGAGGTGATACCTCTATAGGGTGAATGAAAGAAAGATATTCTTTCTGATAATAGGATAGCAA GAGGAATGAATCGATGTGACGAATTCATGGACGC TTGGCGACGATGTTCTTGTGTCATCTGGAACTGGAATCATCATAAAACACACAGGGTGATACTCTTTCTTTTTTTTTTTGTACTAGTATTAAAACTTCAAATATAATTAACTGGAGAGCAGGGGCTGCCTGAGTACATTGCTACGTTTCTGCATCCACCGGCCGTGTGTTGTTTATGCCATCATGTAAAATTCAT ]
[+] EMBL AK104399 [ TCTGCCGGCGCCGGCGTTGGTAGGGTAGCCATGGCGGAGGAGGCCACCCTGAGCCACCCGTCGCGGTACGTGAAGCTGAGCAGGGAGCACGACGCCCCCGCCCCCGCCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTCCACGTCCCGCAGCTCGAGGGCAGGAGGTGCAGCGAGTGCGGCCAGGTCCTGCCGGAATCCTACGAGCCCCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGCCTGCACCGACGATCCACAAACCTGCCGAACTGGGTTGTTCTGTCCTTGTGTTCTTTTTGGACGCAATATTGAGGCCCTCAGAGAGGATATCCCTTGGACAACGCCTTGTGTTTGCCATGCTGTCTTTGTTGAAGGAGGGATTGCGCTTGCAATTCTCACCGCAATATTTCATGGTGTTGATCCCAGAACGTCTTTCCTGATTGGAGAAGGTTTGGTGTTCAGCTGGTGGTTGTGTGGTACTTATACGGGCATCTTTCGCCAAGAACTTCAGAGGAAATACCATCTCAAGAATTCTCCATGTGACCCTTGCATGGTCCATTGCTGCTTGCACTGGTGCGCGAATTGTCAGGAGCACCGTGAAAGGACGGGGCGGCTTGCAGAGAACAGCGCGGTGCCAATGACCGTTGTGAATCCACCTGCAGTGCAAGAGATGAGCATGGCAGAAAGCCGTGGTCCTGTTTCCCCCGGTATGGAGAACGGAGCACCATCAAACTCAAAGGGTGAGCAT GAGGAACCCAAGAGTGATC ACGATGATGTGGAGGTGATACCTCTATAGGGTGAATGAAAGAAAGATATTCTTTCTGATAATAGGATAGCAA GAGGAATGAATCGATGTGACGAATTCATGGACGC TTGGCGACGATGTTCTTGTGTCATCTGGAACTGGAATCATCATAAAACACACAGGGCGATACTCTTTC TTTTTTTTTTGTACTAGTATTAAAACTTCAAATATAATTAACTGGAGAGCAGGGG ]
[+] EMBL CA999023 [ CCGTGAAAGGACGGGGCGGCTTGCAGAGAACAGCGCGGTGCCAATGACCGTTGTGAATCCACCTGCAGTGCAAGAGATGAGCATGGCAGAAAGCCGTGGTCCTGTTTCCCCCGGTATGGAGAACGGAGCACCATCAAACTCAAAGGGTGAGCAT GAGGAACCCAAGAGTGATC ACGATGATGTGGAGGTGATACCTCTATAGGGTGAATGAAAGAAAGATATTCTTTCTGATAATAGGATAGCAA GAGGAATGAATCGATGTGACGAATTCATGGACGC TTGGCGACGATGTTCTTGTGTCATCTGGAACTGGAATCATCATAAAACACACAGGGTGATACTCTTTC TTTTTTTTTTGTACTAGTATTAAAACTTCAAATATAATTAACTGGAGAGCAGGGGCTGCCTGAGTACATTGCTACGTTTCTGCATCCACCGGCCGTGTGTTGTTTATGCCATCATGTAAAATTCATTCTTGATTTTAAAAAAAAAAAAAA]
[+] EMBL AU069909 [ TGACGAATTCATGGACGC TTGGCGACGNTGTTCTTGTGTCATCTGGAACTGGAATCATCATAAAACACACAGGGTGATACTCTNTC TTTNTTTTTTGTACTAGTATTAAAACTNCAAATATAATTAACTGGAGAGCAGGGGCTGCCTGAGTACATTGCTACGTTTCTGCATCCAaaaaaa ]
consensusID : consensus_14179#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 984 fasta sequence
[TCTGCCGGCGCCGGCGTTGGTA-GGGTAGCCATGGCGGAGGAGGCCACCCTGAGCCACCCGTCGCGGTACGTGAAGCTGAGCAGGGAGCACGACGCCCCCGCCCCCGCCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTCCACGTCCCGCAGCTCGAGGGCAGGAGGTGCAGCGAGTGCGGCCAGGTCCTGCCGGAATCCTACGAGCCCCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGCCTGCACCGACGATCCACAAACCTGCCGAACTGGGTTGTTCTGTCCTTGTGTTCTTTTTGGACGCAATATTGAGGCCCTCAGAGAGGATATCCCTTGGACAACGCCTTGTGTTTGCCATGCTGTCTTTGTTGAAGGAGGGATTGCGCTTGCAATTCTCACCGCAATATTTCATGGTGTTGATCCCAGAACGTCTTTCCTGATTGGAGAAGGGTTGGTGTTCAACTGGTGGTTGTGTGGTACTTATACGGGCATC-TTTCGCCAAGAACTTCAGAGGAAATACCATCTCAAGAATTCTTCA-TGTGACCCTTGCATGGTCCATT-GCTGC-TTGCACTGGTGCCGCGAATTGTCAGGAGCACCGTGAAAGGACGGGGCGGCTTGCAGAGAACAGCGCGGTGCCAATGACCGTTGTGAATCCACCTGCAGTGCAAGAGATGAGCATGGCAGAAAGCCGTGGTCCTGTTTCCCCCGGTATGGAGAACGGAGCACCATCAAACTCAAAGGGATAGCAAGAGGAATGAATCGATGTGACGAATTCATGGACGCTTGGCGACGATGTTCTTGTGTCATCTGGAACTGGAATCATCATAAAACACACAGGGTGATACTCTTTCTTTTTTTTTGTACTAGTATTAAAACTTCAAATATAATTAACTGGAGAGCAGGGGCTGCCTGAGTACATTGCTACGTTTCTGCATCCACCGGCCGTGTGTTGTTTATGCCATCATGTAAAATTCAT]
[+] EMBL AK061186 [TCTGCCGGCGCCGGCGTTGGTA GGGTAGCCATGGCGGAGGAGGCCACCCTGAGCCACCCGTCGCGGTACGTGAAGCTGAGCAGGGAGCACGACGCCCCCGCCCCCGCCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTCCACGTCCCGCAGCTCGAGGGCAGGAGGTGCAGCGAGTGCGGCCAGGTCCTGCCGGAATCCTACGAGCCCCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGCCTGCACCGACGATCCACAAACCTGCCGAACTGGGTTGTTCTGTCCTTGTGTTCTTTTTGGACGCAATATTGAGGCCCTCAGAGAGGATATCCCTTGGACAACGCCTTGTGTTTGCCATGCTGTCTTTGTTGAAGGAGGGATTGCGCTTGCAATTCTCACCGCAATATTTCATGGTGTTGATCCCAGAACGTCTTTCCTGATTGGAGAAGGTTTGGTGTTCAGCTGGTGGTTGTGTGGTACTTATACGGGCATC TTTCGCCAAGAACTTCAGAGGAAATACCATCTCAAGAATTCTCCA TGTGACCCTTGCATGGTCCATT GCTGC TTGCACTGGTG CGCGAATTGTCAGGAGCACCGTGAAAGGACGGGGCGGCTTGCAGAGAACAGCGCGGTGCCAATGACCGTTGTGAATCCACCTGCAGTGCAAGAGATGAGCATGGCAGAAAGCCGTGGTCCTGTTTCCCCCGGTATGGAGAACGGAGCACCATCAAACTCAAAGGGATAGCAAGAGGAATGAATCGATGTGACGAATTCATGGACGCTTGGCGACGATGTTCTTGTGTCATCTGGAACTGGAATCATCATAAAACACACAGGGTGATACTCTTTCTTTTTTTTTGTACTAGTATTAAAACTTCAAATATAATTAACTGGAGAGCAGGGGCTGCCTGAGTACATTGCTACGTTTCTGCATCCACCGGCCGTGTGTTGTTTATGCCATCATGTAAAATTCAT]
[+] EMBL AU063526 [ CGGCGTTGGTA GGGTAGCCATGGCGGAGGAGGCCACCCTGAGCCANCCGTCGCGGTACGTGAAGCTGAGCAGGGAGCACGACGCCCCCGCCCCCGCCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTCCACGTCCCGCAGCTCGAGGGCAGGAGGTGCAGCGAGTGCGGCCAGGTCCTGCCGGAATCCTACGAGCCCCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGCCTGCACCGACGATCCACAAACCTGCCGAACTGGGTTGTTCTGTCCTTGTGTTCTTTTTGGACGCAATATTGAGGCCCTCAGAGAGGATATCCCTTGGACAACGNCTTGTGTTTGCCATGCTGTCTTTGTTGAAGGAGGGATTGCGCTTNAAATTCTCACCGNAATATTTCATGGTGTTGATNCCAGAACGTNTTTCCTG ]
[+] EMBL AU063522 [ CGGCGTTGGTA GGGTAGCCATGGCGGAGGAGGCCACCCTGAGCCACCCGTCGCGGTACGTGAAGCTGAGCAGGGAGCACGANGNCCCCGNCCCCGTCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTCCACGTCCCGCANCTCGAGGGCANGAGGTGCAGCGAGTGCGGNCAGGTCCTNCCGGAATCCTACGAGCCCNCCNTCGACGAGCCCTGGACCACCGGGATCTTCGCCTGCACCGACGATCCACAAACCTNCCGAACTGGGTTGTTCTGTCCTTGTGTTCTTTTTGGACGCAATATTGAGGC ]
[+] EMBL CA752719 [ GCGTTGGTA GGGTGGGCATGGCGGA GAGGCCACCCTGAGCCACCCGTCGCGGTACGTGAAGCTGAGCAGGGAGCACGACGCCCCCGCCCCCGCCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTCCACGT CCGCAGCTCGAGGGCAGGAGGTGCAGCGAGTGCGGCCAGGTCCTGCCGGAATCCTACGAGCCCCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGCCTGCACCGACGATCCACAAACCTGCCGAACTGGGTTGTTCTGTCCTTGTGTTCTTTTTGGACGCAATATTGAGGCCCTCAGAGAGGATATCCCTTGGACAACGCCTTGTGTTTG CATGCTGTCTTTGTTGAAGGAGGGATTGCGCTTGCAATTCTCACCGCAATATTTCATGGTGTTGAT CCA AACGTCTTT CTGATTGGAGAAAGGTTGGTGNT ACTGGTGGTTGTGTGGTACTT ]
[+] EMBL CA752683 [ GCGTTGGTA GGGT GGCATGGCGGAGGAGGCCACCCTGAGCCACCCGTCGCGGTACGTGAAGCTGAGCAGGGAGCACGACGCCCCCGCCCCCGCCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTCCACGTCCCGCAGCTCGAGGGCAGGAGGTGCAGCGAGTGCGGCCAGGTCCTGCCGGAATCCTACGAGCCCCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGCCTGCACCGACGATCCACAAACCTGCCGAACTGGGTTGTTCTGTCCTTGTGTTCTTTTTGGACGCAATATTGAGGCCCTCAGAGAGGATATCCCTTGGACAACGCCTTGTGTTTGCCATGCTGTCTTTGTTGAAGGAGGGATTGCGCTTGCAATTCTCACCGCAATATTTCATGGTGTTGATCCCAGAACGTCTTT CTGATTGGAGAAGGTTTGGTGTTCAACTGGTGGTTGTGTGGTACTTATACGGGCATC TTTCGCCAAGAACTTCAGAGGAAATACCATCTCAAGAATTC TCA TGTGACCCTTGCATGGTCCATTGGTTGCTTTGCACTGGTGCCGCGAATTGTCAG ]
[+] EMBL CA752686 [ gcTTGGTA GGG GGCATGGCGGAGGAGGCCACCCTGAGCCACCCGTCGCGGTACGTGAAGCTGAGCAGGGAGCACGACGCCCCCGCCCCCGCCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTCCACGTCCCGCAGCTCGAGGGCAGGAGGTGCAGCGAGTGCGGCCAGGTCCTGCCGGAATCCTACGAGCCCCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGCCTGCACCGACGATCCACAAACCTGCCGAACTGGGTTGTTCTGTCCTTGTGTTCTTTTTGGACGCAATATTGAGGCCCTCAGAGAGGATATCCCTTGGACAACGCCTTGTGTTTGCCATGCTGTCTTTGTTGAAGGAGGGATTGCGCTTGCAATTCTCACCGCAATATTTCATGGTGTTGATCCCAGAACGTCTTTCCTGATTGGAGAAGGGTTGGTGTTCAACTGGTGGTTGTGTGGTACTTATACGGGCATCTTTTCGCCCAGAACTTCAGAGGAAATACCATCT AAGAATTCTTCA TGTGACCCTTGCATGGTCCATT GCTGC TTGCACTGGTGCCCCGAATTGTAAGGAGCACCG ]
[+] EMBL CA752710 [ gcTTGGTATGGGTAGCCATGGCGGAGGAGG GCCCT AGCCACCCGTCGCGGTACGTGAAGCTGAGCAGGGAGCACGACGCCCCCGCCCCCGCCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTCCACGTCCCGCAGCTCGAGGGCAGGAGGTGCAGCGAGTGCGGCCAGGTCCTGCCGGAATCCTACGAGCCCCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGCCTGCACCGACGATCCACAAACCTGCCGAACTGGGTTGTTCTGTCCTTGTGTTCTTTTTGGACGCAATATTGAGGCCCTCAGAGAGGATATCCCTTGGACAACGCCTTGTGTTTGCCATGCTGTCTTTGTTGAAGGAGGGATTGCGCTTGCAATTCTCACCGCAATATTTCATGGTGTTGATCCCAGAACGTCTTTCCTGATTGGAGAAAGGTTGGTGTTCAACTGGTGGTTGTGTGG ACTTATACCGGCATCTTTTCG CAAGAACTTTAAAGGAAATACCAT TTAAGAATTCTTCATTGTGACCCTT ]
consensusID : consensus_14179#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 712 fasta sequence
[CTCGATCTCCTTTAAAGTGCCGGCGCCGGNGTTGGTAGGGTAGCCATGGCGGAGGAGGCCACCCTGAGCCACCCGTCGCGGTACGTGAAGCTGAGCAGGGAGCACGACGCCCCCGCCCCCGCCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTCCACGTCCCGCAGGCACTCTCCATCCATCCTCTTTTCCCCTATCTTACTTGTCATCATCTCATCTGATCTGCTCCTCTCGATCAGCTCGAGGGCAGGAGGTGCAGCGAGTGCGGCCAGGTCCTGCCGGAATCCTACGAGCCCCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGCCTGCACCGACGATCCACAAACCTGCCGAACTGGGTTGTTCTGTCCTTGTGTTCTTTTTGGACGCAATATTGAGGCCCTCAGAGAGGATATCCCTTGGACAACGCCTTGTGTTTGCCATGCTGTCTTTGTTGAAGGAGGGATTGCGCTTGCAATTCTCACCGCAATATTTCATGGTGTTGATCCCAGAACGTCTTTCCTGATTGGAGAAGGTTTGGTGTTCAGCTGGTGGTTGTGTGGTACTTATACGGGCATCTTTCGCCAAGAACTTCAGAGGAAATACCATCTCAAGGTGAAATCATGAAAATCCTTTACTGCTTCATTGTCTATATTCCACTTGACTGTTATTCAGACAAAGTGATCCCATGACCTGTATATTT]
[+] EMBL CB652534 [CTCGATCTCCTTTAAAGTGCCGGCGCCGGNGTTGGTAGGGTAGCCATGGCGGAGGAGGCCACCCTGAGCCACCCGTCGCGGTACGTGAAGCTGAGCAGGGAGCACGACGCCCCCGCCCCCGCCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTCCACGTCCCGCAGGCACTCTCCATCCATCCTCTTTTCCCCTATCTTACTTGTCATCATCTCATCTGATCTGCTCCTCTCGATCAGCTCGAGGGCAGGAGGTGCAGCGAGTGCGGCCAGGTCCTGCCGGAATCCTACGAGCCCCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGCCTGCACCGACGATCCACAAACCTGCCGAACTGGGTTGTTCTGTCCTTGTGTTCTTTTTGGACGCAATATTGAGGCCCTCAGAGAGGATATCCCTTGGACAACGCCTTGTGTTTGCCATGCTGTCTTTGTTGAAGGAGGGATTGCGCTTGCAATTCTCACCGCAATATTTCATGGTGTTGATCCCAGAACGTCTTTCCTGATTGGAGAAGGTTTGGTGTTCAGCTGGTGGTTGTGTGGTACTTATACGGGCATCTTTCGCCAAGAACTTCAGAGGAAATACCATCTCAAGGTGAAATCATGAAAATCCTTTACTGCTTCATTGTCTATATTCCACTTGACTGTTATTCAGACAAAGTGATCCCATGACCTGTATATTT]
consensusID : consensus_14179#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 510 fasta sequence
[GGACCATGCCAGAAACCGTGGTCCTGTTTCCCCCGGTATGGAGAACGGAGCACCATCAAACTCAAAGGGTGAGCATGAGGAACCCACAGAGTGATCACGATGATGTGGAGGTGATACCTCTATAGGGTGAATGAAAGAAAGATATTCTTTCTGATAATAGGATAGCACAGAGGAATGAATCGATGTGACGAATTCATGGACGCTTGGCGACGATGTTCTTGTGTCATCTGGAACTGGAATCATCATAAAACACACCAGGGTGATACTCTTTCTTTTTTTTTTGTACTAGTATTAAAACTTCAAATATAATTAACTGGAGAGCAGGGGCTGCCTGAGTACATTGCTACGTTTCTGCATCCACCGGCCGTGTGTTGTTTATGCCATCATGTAAAATTCATTCTTGATTTTAGCTGTGTTTGACACTTGTGACCTTCATTGGTCCTAAGAGAAACAGTTAATTCGTCTGTCCATGTAGTAAGTTTGTTCTTAAGAACAAATACAAAAAAAAAA]
[+] EMBL BI798888 [GGACCATGCCAGAAACCGTGGTCCTGTTTCCCCCGGTATGGAGAACGGAGCACCATCAAACTCAAAGGGTGAGCATGAGGAACCCACAGAGTGATCACGATGATGTGGAGGTGATACCTCTATAGGGTGAATGAAAGAAAGATATTCTTTCTGATAATAGGATAGCACAGAGGAATGAATCGATGTGACGAATTCATGGACGCTTGGCGACGATGTTCTTGTGTCATCTGGAACTGGAATCATCATAAAACACACCAGGGTGATACTCTTTCTTTTTTTTTTGTACTAGTATTAAAACTTCAAATATAATTAACTGGAGAGCAGGGGCTGCCTGAGTACATTGCTACGTTTCTGCATCCACCGGCCGTGTGTTGTTTATGCCATCATGTAAAATTCATTCTTGATTTTAGCTGTGTTTGACACTTGTGACCTTCATTGGTCCTAAGAGAAACAGTTAATTCGTCTGTCCATGTAGTAAGTTTGTTCTTAAGAACAAATACAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14179#0 GATCTCGATCTCTTGGACTCTGCCGGCGCCGGCGTTGGTAGGGTAGCCATGGCGGAGGAG 60
consensus_14179#3 ------------------------------------------------------------
consensus_14179#1 ------------------------------------------------------------
consensus_14179#2 ------------------------------------------------------------
consensus_14179#0 GCCACCCTGAGCCACCCGTCGCGGTACGTGAAGCTGAGCAGGGAGCACGACGCCCCCGCC 120
consensus_14179#3 ------------------------------------------------------------
consensus_14179#1 ------------------------------------------------------------
consensus_14179#2 ------------------------------------------------------------
consensus_14179#0 CCCGCCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTCCACGTCCCGCAGCTCGAG 180
consensus_14179#3 ------------------------------------------------------------
consensus_14179#1 ------------------------------------------------------------
consensus_14179#2 ------------------------------------------------------------
consensus_14179#0 GGCAGGAGGTGCAGCGAGTGCGGCCAGGTCCTGCCGGAATCCTACGAGCCCCCCGCCGAC 240
consensus_14179#3 ------------------------------------------------------------
consensus_14179#1 ------------------------------------------------------------
consensus_14179#2 ------------------------------------------------------------
consensus_14179#0 GAGCCCTGGACCACCGGGATCTTCGCCTGCACCGACGATCCACAAACCTGCCGAACTGGG 300
consensus_14179#3 ------------------------------------------------------------
consensus_14179#1 ------------------------------------------------------------
consensus_14179#2 ------------------------------------------------------------
consensus_14179#0 TTGTTCTGTCCTTGTGTTCTTTTTGGACGCAATATTGAGGCCCTCAGAGAGGATATCCCT 360
consensus_14179#3 ------------------------------------------------------------
consensus_14179#1 ------------------------------------------------------------
consensus_14179#2 ------------------------------------------------------------
consensus_14179#0 TGGACAACGCCTTGTGTTTGCCATGCTGTCTTTGTTGAAGGAGGGATTGCGCTTGCAATT 420
consensus_14179#3 ------------------------------------------------------------
consensus_14179#1 ------------------------------------------------------------
consensus_14179#2 ------------------------------------------------------------
consensus_14179#0 CTCACCGCAATATTTCATGGTGTTGATCCCAGAACGTCTTTCCTGATTGGAGAAGGTTTG 480
consensus_14179#3 ------------------------------------------------------------
consensus_14179#1 ------------------------------------------------------------
consensus_14179#2 ------------------------------------------------------------
consensus_14179#0 GTGTTCAGCTGGTGGTTGTGTGGTACTTATACGGGCATCTTTCGCCAAGAACTTCAGAGG 540
consensus_14179#3 ------------------------------------------------------------
consensus_14179#1 ------------------------------------------------------------
consensus_14179#2 ------------------------------------------------------------
consensus_14179#0 AAATACCATCTCAAGAATTCTCCATGTGACCCTTGCATGGTCCATTGCTGCTTGCACTGG 600
consensus_14179#3 ------------------------------------------------------------
consensus_14179#1 ------------------------------------------------------------
consensus_14179#2 ------------------------------------------------------------
consensus_14179#0 TGCGCGAATTGTCAGGAGCACCGTGAAAGGACGGGGCGGCTTGCAGAGAACAGCGCGGTG 660
consensus_14179#3 ------------------------------------------------------------
consensus_14179#1 --------------------------TCTGCCGGCGCCGGCGTTGGTAGGGTAGCCATGG 34
consensus_14179#2 -----------CTCGATCTCCTTTAAAGTGCCGGCGCCGGNGTTGGTAGGGTAGCCATGG 49
consensus_14179#0 CCAATGACCGTTGTGAATCCACCTGCAGTGCAAGAGATGAGCATGGCAGAAAGCCGTGGT 720
consensus_14179#3 -------------------------------------GGACCATGCCAGAAA-CCGTGGT 22
consensus_14179#1 CGGAGGAGGCCACCCTGAGCCACCCGTCGCGGTACGTGAAGCTGAGCAGGGA-GCACGAC 93
consensus_14179#2 CGGAGGAGGCCACCCTGAGCCACCCGTCGCGGTACGTGAAGCTGAGCAGGGA-GCACGAC 108
* * *** * * *
consensus_14179#0 CCTGTTTCCCCCGGTATGGAGAACGGAGCACCATCAAACTCAAAGGGTGAGCATGAGGAA 780
consensus_14179#3 CCTGTTTCCCCCGGTATGGAGAACGGAGCACCATCAAACTCAAAGGGTGAGCATGAGGAA 82
consensus_14179#1 GCCCCCGCCCCCGCCGAGGACATCC--GCCCCGGCGAGCTCAACCAGCCAGTCCACGTCC 151
consensus_14179#2 GCCCCCGCCCCCGCCGAGGACATCC--GCCCCGGCGAGCTCAACCAGCCAGTCCACGTCC 166
* ****** *** * * ** ** * * ***** * ** *
consensus_14179#0 CCCA-AGAGTGATCA-CGATGATGTGGAGGTGATACCTCTATAGGGTGAATGAAAGAAAG 838
consensus_14179#3 CCCACAGAGTGATCA-CGATGATGTGGAGGTGATACCTCTATAGGGTGAATGAAAGAAAG 141
consensus_14179#1 CGCAG------------------------------------------------------- 156
consensus_14179#2 CGCAGGCACTCTCCATCCATCCTCTTTTCCCCTATCTTACTTGTCATCATCTCATCTGAT 226
* **
consensus_14179#0 ATATTCTTTCTGAT-AATAGGATAGCA-AGAG------GAATGAATCGATGT---GACGA 887
consensus_14179#3 ATATTCTTTCTGAT-AATAGGATAGCACAGAG------GAATGAATCGATGT---GACGA 191
consensus_14179#1 -----------------CTCGAGGGCAGGAGGTGCAGCGAGTGCGGCCAGGTCCTGCCGG 199
consensus_14179#2 CTGCTCCTCTCGATCAGCTCGAGGGCAGGAGGTGCAGCGAGTGCGGCCAGGTCCTGCCGG 286
** *** * ** ** * * ** * **
consensus_14179#0 ATTCATGGACGCTTGGCGACGATGT-TCTTGTGTCATCTGGAACTGGA---------ATC 937
consensus_14179#3 ATTCATGGACGCTTGGCGACGATGT-TCTTGTGTCATCTGGAACTGGA---------ATC 241
consensus_14179#1 AATCCTACGAGCCCCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGCCTGCACCGACG 259
consensus_14179#2 AATCCTACGAGCCCCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGCCTGCACCGACG 346
* ** * ** ** *** * * ** ** * *** ** *
consensus_14179#0 ATCATAAAACACAC-AGGGTGA--TACTCTTTCTTT----TTTTTTTGTAC-TAGTATTA 989
consensus_14179#3 ATCATAAAACACACCAGGGTGA--TACTCTTTCTTT----TTTTTTTGTAC-TAGTATTA 294
consensus_14179#1 ATCCACAAACCTGCCGAACTGGGTTGTTCTGTCCTTGTGTTCTTTTTGGACGCAATATTG 319
consensus_14179#2 ATCCACAAACCTGCCGAACTGGGTTGTTCTGTCCTTGTGTTCTTTTTGGACGCAATATTG 406
*** **** * ** * *** ** ** * ****** ** * ****
consensus_14179#0 AAACTTCAAATATAATTAACTGGAGAGCAGGGGCTGCCTGAGTACATTGCTACGTTTCTG 1049
consensus_14179#3 AAACTTCAAATATAATTAACTGGAGAGCAGGGGCTGCCTGAGTACATTGCTACGTTTCTG 354
consensus_14179#1 AGGCCCTCAGAGAGGATATCCCTTGGACAACGCCT-TGTGTTTGCCATGCTGTCTTTGTT 378
consensus_14179#2 AGGCCCTCAGAGAGGATATCCCTTGGACAACGCCT-TGTGTTTGCCATGCTGTCTTTGTT 465
* * * ** * * ** * ** ** * * **** *** *
consensus_14179#0 CATCCACCGGCCGTG--TGTTGTT----------TATGCCATCATGTAAAATTCA----- 1092
consensus_14179#3 CATCCACCGGCCGTG--TGTTGTT----------TATGCCATCATGTAAAATTCA----- 397
consensus_14179#1 GAAGGAGGGATTGCGCTTGCAATTCTCACCGCAATATTTCATGGTGTTGATCCCAGAACG 438
consensus_14179#2 GAAGGAGGGATTGCGCTTGCAATTCTCACCGCAATATTTCATGGTGTTGATCCCAGAACG 525
* * * * * ** ** *** *** *** * **
consensus_14179#0 ---TTCTTGATTTTAAAAAAAAAAAAAA-------------------------------- 1117
consensus_14179#3 ---TTCTTGATTTTAGCTGTGTTTGACACTTG--TGACCTTCAT-TGGTCCTAAGAGAAA 451
consensus_14179#1 TCTTTCCTGATTGGAGAAG-GGTTGGTGTTCAACTGGTGGTTGTGTGGTACTTATACGGG 497
consensus_14179#2 TCTTTCCTGATTGGAGAAG-GTTTGGTGTTCAGCTGGTGGTTGTGTGGTACTTATACGGG 584
*** ***** *
consensus_14179#0 ------------------------------------------------------------
consensus_14179#3 CAGTTAATTCGTCTGTCCATGTAGTAAGTTTGTTCTTAAGAACAAATACAAAAAAAAAA- 510
consensus_14179#1 CATCTTTCGCCAAGAACTTCAGAGGAAATACCATCTCAAGAATTCTT-CATGTGACCCTT 556
consensus_14179#2 CATCTTTCGCCAAGAACTTCAGAGGAAATACCATCTCAAGGTGAAAT-CATGAAAATCCT 643
consensus_14179#0 ------------------------------------------------------------
consensus_14179#3 ------------------------------------------------------------
consensus_14179#1 GCATGGTCCATTGCTGCTTGCACTGGTGCCGCGAATTGTCAGGAGCACCGTGAAAGGACG 616
consensus_14179#2 TTACTGCT--TCATTGTCTATATTCCACTTGACTGTTATTCAGA------CAAAGTGATC 695
consensus_14179#0 ------------------------------------------------------------
consensus_14179#3 ------------------------------------------------------------
consensus_14179#1 GGGCGGCTTGCAGAGAACAGCGCGGTGCCAATGACCGTTGTGAATCCACCTGCAGTGCAA 676
consensus_14179#2 CCATGACCTGTATATTT------------------------------------------- 712
consensus_14179#0 ------------------------------------------------------------
consensus_14179#3 ------------------------------------------------------------
consensus_14179#1 GAGATGAGCATGGCAGAAAGCCGTGGTCCTGTTTCCCCCGGTATGGAGAACGGAGCACCA 736
consensus_14179#2 ------------------------------------------------------------
consensus_14179#0 ------------------------------------------------------------
consensus_14179#3 ------------------------------------------------------------
consensus_14179#1 TCAAACTCAAAGGGATAGCAAGAGGAATGAATCGATGTGACGAATTCATGGACGCTTGGC 796
consensus_14179#2 ------------------------------------------------------------
consensus_14179#0 ------------------------------------------------------------
consensus_14179#3 ------------------------------------------------------------
consensus_14179#1 GACGATGTTCTTGTGTCATCTGGAACTGGAATCATCATAAAACACACAGGGTGATACTCT 856
consensus_14179#2 ------------------------------------------------------------
consensus_14179#0 ------------------------------------------------------------
consensus_14179#3 ------------------------------------------------------------
consensus_14179#1 TTCTTTTTTTTTGTACTAGTATTAAAACTTCAAATATAATTAACTGGAGAGCAGGGGCTG 916
consensus_14179#2 ------------------------------------------------------------
consensus_14179#0 ------------------------------------------------------------
consensus_14179#3 ------------------------------------------------------------
consensus_14179#1 CCTGAGTACATTGCTACGTTTCTGCATCCACCGGCCGTGTGTTGTTTATGCCATCATGTA 976
consensus_14179#2 ------------------------------------------------------------
consensus_14179#0 --------
consensus_14179#3 --------
consensus_14179#1 AAATTCAT 984
consensus_14179#2 --------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||