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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14184#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 2021 fasta sequence
[ACGCGCTGAGGCCTGTGAAAGGAAAGGAAAGGAAAGGAGAGGAGTGGAGGCGAGGCGGCGGCGGCGGCGAGATCCACACATGACACATCTCGAGGCGCGCGGCACCACCACCGCCATGGGAGCGCTCGAGGAGGCCCACCTCGCCGCCGCCATCTCCGCGTGCGAGTGCGAGTGCTACGAGGAGGAGGAGGAGGATGACCTCGTCGAGGGGGACGGCGAGGCGGCGGCCGCCGACGCCATGGAGCCGGCGGTGCGCGCGCTGCTGCTGGGGCTCGGCGAGGACGCGCGCCGGGAGGGGCTGCGGAGGACGCCCAAGCGCGTCGCCAAGGCCTTCCGCGACGGCACCCGAGGTTACAAGCAAAAAGTAAAGGACATTGTGCAGGGGGCTCTCTTTCCTGAGGTTGGTGTTGACAAGAGGACTGGTTCTGCTGGAGGAACTGGAGGGCAAGTTGTTGTTCGTGATATTGATCTTTTCTCATACTGTGAGTCATGCTTACTTCCATTCAGCATACAATTCCATGTTGGCTATGTGCCCTCTGGTGGAAGGGTTGTTGGGTTAAGCAAGCTTTCGAGAGTAGCTGATGTCTTCGCCAAGAGGTTGCAGAATCCTCAAAGACTGGCTAGTGAAGTTTGTGGTGCATTGCATGCTAGCATACAACCTGCTGGTGTGGCTGTTGCTCTGCAATGTTGGCACATACCTTTGCCAGAAAACTTGAAATGCAAGACTTTGCAAGGTTGGATTAGCACTTCACATTCATCTCGCTCTGGAGTTTTTGAGGGTGAGAGCAGCTCTTTTTGGAATGACTTCTCAGCCCTTCTTAAGCTTAGGGGCATAGACATGGAGAGGGACAGCCATTCTGCCTCCATAGCTTGGTGCCCTTTAAGGTCTCATGATGTCCCAGTCTGCAATGGGCACTGCAAGAAGGCTACAACCAACGGTGCAATTTCACCCAAATCAGTACCAGCTCCCTCTAATATGGTTTCTGCTGTTAGCTCAATGCTCTTATCCCTTGGAGAGGATCCCTTCAGGAAAGAACTTGTAGGTACTCCTCAGCGTTACGTGCAATGGCTGATGAAGTTCAGAGCATGTAACCTAGATGTGAAGCTGAATGGCTTTACACTCAATAATTTGAGTGTATACCAGAGTCCAGCTGG-AGATGCTGCTGACCATCGAGCAATCCATTCTGAGCTGCATTTGCCATTTTGTGCGCAGTGCGAGCACCATCTTCTGCCGTTCTATGGAGTAGTGCATATTGGCTACCTTGACGGCGGAGATGGTGAAGTGATTGATCGATCTCATTTTCAGGCCTTGGTTCATTTTTATGGATGCAAGCTTCAGGTTCAAGAGAGAATGACAAGGCAGATAGCTGAAGCAGTTTATTCTGTTTCGCATTGTGGGGCCATAGTTGTTGTAGAAGCTAACCACATTTGCATGATATCAAGGGGAATAGAGAAAATCAGGAGTAGCACTGCAACGATTGCAGTTCTGGGTCAGTTTTTGACGGACCCTTCTGCCAAGGCACGCTTTCTGCAGAACGTAGTAGATACAACTGGTTTGGCAGTATGAATCACTTAGATCATACAAACTAGAATATCAGCTAAGAATACATGATTCAGAGAAGTACCGCAGCC-ACTTTAATATGGTTGAAAGTTGGTACCCAGTTCGGTGTGTTACCGGCAAACATTGCCCATTGGTTCGAGACCGGGGCTGGTGCCACGTCTCTCTGGAAGGAAAATGTCCATTTGCTTGGTGAGGGAAAATTTTCGTCACATGGAAGATTATATTGAAGCTGTCACTGGAAGCACCAAAAGGGTTTGGTTTTCTCTGT-GTTGTACCATTTTT-CATTTGCACGGCACTTGAAATCTATACTGCACTAATTGCAGATGTGCCGAGAAAGATATATACACAGAAGCAATGTTTGTCACATCATTTTTCACTGTAGCAAATTTTGATGAGATCAATGGCTCCAGCTCCTGTGAAATGAATGTGATTGTTCTCTTGAGTGTTGACCCGCCAAAAA]
[+] EMBL AK069126 [ACGCGCTGAGGCCTGTGAAAGGAAAGGAAAGGAAAGGAGAGGAGTGGAGGCGAGGCGGCGGCGGCGGCGAGATCCACACATGACACATCTCGAGGCGCGCGGCACCACCACCGCCATGGGAGCGCTCGAGGAGGCCCACCTCGCCGCCGCCATCTCCGCGTGCGAGTGCGAGTGCTACGAGGAGGAGGAGGAGGATGACCTCGTCGAGGGGGACGGCGAGGCGGCGGCCGCCGACGCCATGGAGCCGGCGGTGCGCGCGCTGCTGCTGGGGCTCGGCGAGGACGCGCGCCGGGAGGGGCTGCGGAGGACGCCCAAGCGCGTCGCCAAGGCCTTCCGCGACGGCACCCGAGGTTACAAGCAAAAAGTAAAGGACATTGTGCAGGGGGCTCTCTTTCCTGAGGTTGGTGTTGACAAGAGGACTGGTTCTGCTGGAGGAACTGGAGGGCAAGTTGTTGTTCGTGATATTGATCTTTTCTCATACTGTGAGTCATGCTTACTTCCATTCAGCATACAATTCCATGTTGGCTATGTGCCCTCTGGTGGAAGGGTTGTTGGGTTAAGCAAGCTTTCGAGAGTAGCTGATGTCTTCGCCAAGAGGTTGCAGAATCCTCAAAGACTGGCTAGTGAAGTTTGTGGTGCATTGCATGCTAGCATACAACCTGCTGGTGTGGCTGTTGCTCTGCAATGTTGGCACATACCTTTGCCAGAAAACTTGAAATGCAAGACTTTGCAAGGTTGGATTAGCACTTCACATTCATCTCGCTCTGGAGTTTTTGAGGGTGAGAGCAGCTCTTTTTGGAATGACTTCTCAGCCCTTCTTAAGCTTAGGGGCATAGACATGGAGAGGGACAGCCATTCTGCCTCCATAGCTTGGTGCCCTTTAAGGTCTCATGATGTCCCAGTCTGCAATGGGCACTGCAAGAAGGCTACAACCAACGGTGCAATTTCACCCAAATCAGTACCAGCTCCCTCTAATATGGTTTCTGCTGTTAGCTCAATGCTCTTATCCCTTGGAGAGGATCCCTTCAGGAAAGAACTTGTAGGTACTCCTCAGCGTTACGTGCAATGGCTGATGAAGTTCAGAGCATGTAACCTAGATGTGAAGCTGAATGGCTTTACACTCAATAATTTGAGTGTATACCAGAGTCCAGCTGG AGATGCTGCTGACCATCGAGCAATCCATTCTGAGCTGCATTTGCCATTTTGTGCGCAGTGCGAGCACCATCTTCTGCCGTTCTATGGAGTAGTGCATATTGGCTACCTTGACGGCGGAGATGGTGAAGTGATTGATCGATCTCATTTTCAGGCCTTGGTTCATTTTTATGGATGCAAGCTTCAGGTTCAAGAGAGAATGACAAGGCAGATAGCTGAAGCAGTTTATTCTGTTTCGCATTGTGGGGCCATAGTTGTTGTAGAAGCTAACCACATTTGCATGATATCAAGGGGAATAGAGAAAATCAGGAGTAGCACTGCAACGATTGCAGTTCTGGGTCAGTTTTTGACGGACCCTTCTGCCAAGGCACGCTTTCTGCAGAACGTAGTAGATACAACTGGTTTGGCAGTATGAATCACTTAGATCATACAAACTAGAATATCAGCTAAGAATACATGATTCAGAGAAGTACCGCAGCC ACTTTAATATGGTTGAAAGTTGGTACCCAGTTCGGTGTGTTACCGGCAAACATTGCCCATTGGTTCGAGACCGGGGCTGGTGCCACGTCTCTCTGGAAGGAAAATGTCCATTTGCTTGGTGAGGGAAAATTTTCGTCACATGGAAGATTATATTGAAGCTGTCACTGGAAGCACCAAAAGGGTTTGGTTTTCTCTGT GTTGTACCATTTTT CATTTGCACGGCACTTGAAATCTATACTGCACTAATTGCAGATGTGCCGAGAAAGATATATACACAGAAGCAATGTTTGTCACATCATTTTTCACTGTAGCAAATTTTGATGAGATCAATGGCTCCAGCTCCTGTGAAATGAATGTGATTGTTCTCTTGAGTG ]
[+] EMBL CB672834 [ gagtgaccaGGCACCACCACCGCCATGGGAGCGCTCGAGGAGGCCCACCTCGCCGCCGCCATCTCCGCGTGCGAGTGCGAGTGCTACGAGGAGGAGGAGGAGGATGACCTCGTCGAGGGGGACGGCGAGGCGGCGGCCGCCGACGCCATGGAGCCGGCGGTGCGCGCGCTGCTGCTGGGGCTCGGCGAGGACGCGCGCCGGGAGGGGCTGCGGAGGACGCCCAAGCGCGTCGCCAAGGCCTTCCGCGACGGCACCCGAGGTTACAAGCAAAAAGTAAAGGACATTGTGCAGGGGGCTCTCTTTCCTGAGGTTGGTGTTGACAAGAGGACTGGTTCTGCTGGAGGAACTGGAGGGCAAGTTGTTGTTCGTGATATTGATCTTTTCTCATACTGTGAGTCATGCTTACTTCCATTCAGCATACAATTCCATGTTGGCTATGTGCCCTCTGGTGGAAGGGTTGTTGGGTTAAGCAAGCTTTCGAGAGTAGCTGATGTCTTCGCCAAGAGGTTGCAGAATCCTCAAAGACTGGCTAGTGAAGTTTGTGGTGCATTGCATGCTAGCATACAACCTGCTGGTGTGGCTGTTGCTCTGCAATGTTGGCACATACCTTTGCCAGAAAACTTGAAATGCAAGACTTTGCAAGGTTGGATTAGCACTTCACATTCATCTCGCTCTGGAGTTTTTGAGGGTGAGAGCAGCTCTTTTTGGAATGACTTCTCAGCCCTTCTTAAGCTTAGGGGCATAGACATGGAGAGGGACAGCCATTCTG ]
[+] EMBL AK105717 [ GCTTACTTCCATTCAGCATACAATTCCATGTTGGCTATGTGCCCTCTGGTGGAAGGGTTGTTGGGTTAAGCAAGCTTTCGAGAGTAGCTGATGTCTTCGCCAAGAGGTTGCAGAATCCTCAAAGACTGGCTAGTGAAGTTTGTGGTGCATTGCATGCTAGCATACAACCTGCTGGTGTGGCTGTTGCTCTGCAATGTTGGCACATACCTTTGCCAGAAAACTTGAAATGCAAGACTTTGCAAGGTTGGATTAGCACTTCACATTCATCTCGCTCTGGAGTTTTTGAGGGTGAGAGCAGCTCTTTTTGGAATGACTTCTCAGCCCTTCTTAAGCTTAGGGGCATAGACATGGAGAGGGACAGCCATTCTGCCTCCATAGCTTGGTGCCCTTTAAGGTCTCATGATGTCCCAGTCTGCAATGGGCACTGCAAGAAGGCTACAACCAACGGTGCAATTTCACCCAAATCAGTACCAGCTCCCTCTAATATGGTTTCTGCTGTTAGCTCAATGCTCTTATCCCTTGGAGAGGATCCCTTCAGGAAAGAACTTGTAGGTACTCCTCAGCGTTACGTGCAATGGCTGATGAAGTTCAGAGCATGTAACCTAGATGTGAAGCTGAATGGCTTTACACTCAATAATTTGAGTGTATACCAGAGTCCAGCTGG AGATGCTGCTGACCATCGAGCAATCCATTCTGAGCTGCATTTGCCATTTTGTGCGCAGTGCGAGCACCATCTTCTGCCGTTCTATGGAGTAGTGCATATTGGCTACCTTGACGGCGGAGATGGTGAAGTGATTGATCGATCTCATTTTCAGGCCTTGGTTCATTTTTATGGATGCAAGCTTCAGGTTCAAGAGAGAATGACAAGGCAGATAGCTGAAGCAGTTTATTCTGTTTCGCATTGTGGGGCCATAGTTGTTGTAGAAGCTAACCACATTTGCATGATATCAAGGGGAATAGAGAAAATCAGGAGTAGCACTGGAACGATTGCAGTTCTGGGTCAGTTTTTGACGGACCCTTCTGCCAAGGCACGCTTTCTGCAGAACGTAGTAGATACAACTGGTTTGGCAGTATGAATCACTTAGATCATACAAACTAGAATATCAGCTAAGAATACATGATTCAGAGAAGTACCGCAGCC ACTTTAATATGGTTGAAAGTTGGTACCCAGTTCGGTGTGTTACCGGCAAACATTGCCCATTGGTTCGAGACCGGGGCTGGTGCCACGTCTCTCTGGAAGGAAAATGTCCATTTGCTTGGTGAGGGAAAATTTTCGTCACATGGAAGATTATATTGAAGCTGTCACTGGAAGCACCAAAAGGGTTTGGTTTTCTCTGT GTTGTACCATTTTT CATTTGCACGGCACTTGAAATCTATACTGCACTAATTGCAGATGTGCCGAGAAAGATATATACACAGAAGCAATGTTTGTCACATCATTTTTCACTGTAGCAAATTT ]
[+] EMBL CA998453 [ aagATAGCTTGGTGCCCTTTAAGGTCTCATGATGTCCCAGTCTGCAATGGGCACTGCAAGAAGGCTACAACCAACGGCGCAATTTCACCCAAATCAGTACCAGCTCCCTCTAATATGGTTTCTGCTGTTAGCTCAGTGCTCTTATCCCTTGGAGAGGATCCCTTCAGGAAAGAACTTGTAGGTACTCCTCAGCGTTACGTGCAATGGCTGATGAAGTTCAGAGCATGTAACCTAGATGTGAAGCTGAATGGCTTTACACTCAATAATTTGAGTGTATACCAGACTCCAGCTGGTAGATGCTGCTGACCATCGAGCAATCCATTCTGAGCTGCATTTGCCATT ]
[-] EMBL CB672835 [ GAGCATGTAACCTAGATGTGAAGCTGAATGGCTTTACACTCAATAATTTGAGTGTATACCAGAGTCCAGCTGG AGATGCTGCTGACCATCGAGCAATCCATTCTGAGCTGCATTTGCCATTTTGTGCGCAGTGCGAGCACCATCTTCTGCCGTTCTATGGAGTAGTGCATATTGGCTACCTTGACGGCGGAGATGGTGAAGTGATTGATCGATCTCATTTTCAGGCCTTGGTTCATTTTTATGGATGCAAGCTTCAGGTTCAAGAGAGAATGACAAGGCAGATAGCTGAAGCAGTTTATTCTGTTTCGCATTGTGGGGCCATAGTTGTTGTAGAAGCTAACCACATTTGCATGATATCAAGGGGAATAGAGAAAATCAGGAGTAGCACTGCAACGATTGCAGTTCTGGGTCAGTTTTTGACGGACCCTTCTGCCAAGGCACGCTTTCTGCAGAACGTAGTAGATACAACTGGTTTGGCAGTATGAATCACTTAGATCATACAAACTAGAATATCAGCTAAGAATACATGATTCAGAGAAGTACCGCAGCC ACTTTAATATGGTTGAAAGTTGGTACCCAGTTCGGTGTGTTACCGGCAAACATTGCCCATTGGTTCGAGACCGGGGCTGGTGCCACGTCTCTCTGGAAGGAAAATGTCCATTTGCTTGGTGAGGGAAAATTTTCGTCACATGGAAGATTATATTGAAGCTGTCACTGGAAGCACCAAAAGGGTTTGGTTTTCTCTGT GTTGTACCATTTTT CATTTGCACGGCACTTGAAATCTATACTGCACTAATTGCAGATGTGCCGAGAAAGATATATACACAGAAGCAATGTTTGTCGCATCATTTTTCACTGTAGCAAATTTTGATGAG ]
[-] EMBL CB672837 [ GTATACCAGAGTCCAGCTGG AGATGCTGCTGACCATCGAGCAATCCATTCTGAGCTGCATTTGCCATTTTGTGCGCAGTGCGAGCACCATCTTCTGCCGTTCTATGGAGTAGTGCATATTGGCTACCTTGACGGCGGAGATGGTGAAGTGATTGATCGATCTCATTTTCAGGCCTTGGTTCATTTTTATGGATGCAAGCTTCAGGTTCAAGAGAGAATGACAAGGCAGATAGCTGAAGCAGTTTATTCTGTTTCGCATTGTGGGGCCATAGTTGTTGTAGAAGCTAACCACATTTGCATGATATCAAGGGGAATAGAGAAAATCAGGAGTAGCACTGCAACGATTGCAGTTCTGGGTCAGTTTTTGACGGACCCTTCTGCCAAGGCACGCTTTCTGCAGAACGTAGTAGATACAACTGGTTTGGCAGTATGAATCACTTAGATCATACAAACTAGAATATCAGCTAAGAATACATGATTCAGAGAAGTACCGCAGCC ACTTTAATATGGTTGAAAGTTGGTACCCAGTTCGGTGTGTTACCGGCAAACATTGCCCATTGGTTCGAGACCGGGGCTGGTGCCACGTCTCTCTGGAAGGAAAATGTCCATTTGCTTGGTGAGGGAAAATTTTCGTCACATGGAAGATTATATTGAAGCTGTCACTGGAAGCACCAAAAGGGTTTGGTTTTCTCTGT GTTGTACCATTTTT CATTTGCACGGCACTTGAAATCTATACTGCACTAATTGCAGATGTGCCGAGAAAGATATATACACAGAAGCAATGTTTGTCGCATCATTTTTCACTGTAGCAAATTTTGATGAG ]
[+] EMBL AU172996 [ ATGCTGCTGACCATCGAGCAATCCATTCTGAGCTGCATTTGCCATTTTGTGCGCAGTGCGAGCACCATCTTCTGCCGTTCTATGGAGTAGTGCATATTGGCTACCTTGACGGCGGAGATGGTGAAGTGATTGATCGATCTCATTTTCAGGCCTTGGTTCATTTTTATGGATGCAAGCTTCAGGTTCAAGAGAGAATGACAAGGCAGATAGCTGAAGCAGTTTATTCTGTTTCGCATTGTGGGGCCATAGTTGTTGTAGAAGCTAACCACATTTGCATGATATCAAGGGGAATAGAGAAAATCAGGAGTAGCACTGCAACGATTGCAGTTCTGGGTCAGTTTTTGACGGACCCTTCTGCCAAGGCACGCTTTCTGCAGAACGTAGTAGATACAACTGGTTTGGCAGTATGAATCACTTAGATCATACAAACTAG ]
[+] EMBL BI795188 [ ATACATGATTCAGAGAAGTACTGCAGCCAACTTTAATATGGTTGAAAGTTGGTACCCAGTTCGGTGTGTTACC GCAAACATTGCCCATTGGTTCGAGACCGGGGCTGGTGCCACGTCTCTCTGGAAGGAAAATGTCCATTTGCTTGGTGAGGGAAAATTTTCGTCACATGGAAGATTATATTGAAGCTGTCACTGGAAGCACC AAAGGGTTTGGTTTTCTCTGT GTTGTACCATTTTT CATTTGCACGGCACTTGAAATCTATACTGCACTAGTTGCAGATGTGCCGAGAAAGATATATACACAGAAGCAATGTTTGTCACATCATTTTTCACTGTAGTAAATTTTGATGAGATCAATGGCTCCAGCTCCTGTGAAAaa ]
[+] EMBL C98712 [ TTGAACCTGTCACTGGAAGCACCAAAAAGGGTTGGNTTTCCCTGTGGTTGTACCATTTTTNCATTTGCACGGCACTTGAAATCTATACTGCACTAATTGCAGATGTGCCGAGAAAGATATATACACAGAAGCAATGTTTGTCACATCATTTTTCACTGTAGCAAATTTTGATGAGATCAATGGCTCCAGCTCCTGTGAAATGAATGTGATTGTTCTCTTGAGTGTTGACCCGCCAAAAA]
[-] EMBL D42226 [ GCTGTCACT GAAGCACAAAAAGGGTTTGGTTTTCTCTGT GTTGTACCATTTTT CATTTGCACGGCACTTGAAATCTATACTGCACTAATTGCAGATGTGCCGAGAAAGATATATACACAGAAGCAATGTTTGTCACATCATTTTTCACTGTAGAAAATTTTAATAATTTCAATGGCTCCAGCTCCTGTta ]
consensusID : consensus_14184#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 716 fasta sequence
[GAGTGACCCCTTAAACCACCGCCATGGGAGCGCTCGAGGAGGCCCACCTCGCCGCCGCCATCTCCGCGTGCGAGTGCGAGTGCTACGAGGAGGAGGAGGAGGATGACCTCGTCCAGGGGGACGGCGAGGCGGCGGCCGCCGACTCCATGGAGCCGGCGGTGCGCGCGCTGCTGCTGGGGCTCGGCGAGGACGCGCGCCGGGAGGGGCTGCAGAGGACGCCCAAGCGCGTCGCCAAGGCCTTCCGCGACGGCACCCGAGGTTACAAGCAAAAAGTAAAGGACATTGTGCAGGGGGCTCTCTTTCCTGAGGTTGGTGTTGACAAGAGGACTGGTTCTGCTGGAGGAACTGGAGGGCAAGTTGTTGTTCGTGATATTGATCTTTTCTCATACTGTGAGTCATGCTTACTTCCATTCAGCATACAATTCCATGTTGGCTATGTGCCCTCTGGTGGAAGGGTTGTTGGGTTAAGCAAGCTTTCGAGAGTAGCTGATGTCTTCGCCAAGAGGTTGCAGAATCCTCAAAGACTGGCTAGGGAAGTTTGTGGTGCATTGCATGCTATCATACAACCTGCTGGTGTGGCTGTTGCTCTGCAATGTTGGCACATACCTTTGCCAGAGAACTTGAGATGCAAGACTTTGCAAGGTTGGATTATCACTTCACATTCATCTCGCTCTGGAGTTATTGACGGTGACAGCAACTCTTTTAGGAATGACTTC]
[+] EMBL CB672836 [GAGTGACCCCTTAAACCACCGCCATGGGAGCGCTCGAGGAGGCCCACCTCGCCGCCGCCATCTCCGCGTGCGAGTGCGAGTGCTACGAGGAGGAGGAGGAGGATGACCTCGTCCAGGGGGACGGCGAGGCGGCGGCCGCCGACTCCATGGAGCCGGCGGTGCGCGCGCTGCTGCTGGGGCTCGGCGAGGACGCGCGCCGGGAGGGGCTGCAGAGGACGCCCAAGCGCGTCGCCAAGGCCTTCCGCGACGGCACCCGAGGTTACAAGCAAAAAGTAAAGGACATTGTGCAGGGGGCTCTCTTTCCTGAGGTTGGTGTTGACAAGAGGACTGGTTCTGCTGGAGGAACTGGAGGGCAAGTTGTTGTTCGTGATATTGATCTTTTCTCATACTGTGAGTCATGCTTACTTCCATTCAGCATACAATTCCATGTTGGCTATGTGCCCTCTGGTGGAAGGGTTGTTGGGTTAAGCAAGCTTTCGAGAGTAGCTGATGTCTTCGCCAAGAGGTTGCAGAATCCTCAAAGACTGGCTAGGGAAGTTTGTGGTGCATTGCATGCTATCATACAACCTGCTGGTGTGGCTGTTGCTCTGCAATGTTGGCACATACCTTTGCCAGAGAACTTGAGATGCAAGACTTTGCAAGGTTGGATTATCACTTCACATTCATCTCGCTCTGGAGTTATTGACGGTGACAGCAACTCTTTTAGGAATGACTTC]
consensusID : consensus_14184#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 528 fasta sequence
[TGCAACGATTGCAGTTCTGGGTCAGTTTTTGACGGACCCTTCTGCCAAGGCACGCTTTCTNGCACGAATGTAGTATGATACCCANCTGGTTTGGCAGTATGAATCACCTTAGATCATACCNCATACNCTAGAATATCCACGCTAACGAATANCATGATTCACGAGAAGTACCTGCACGCCACCTTTAATATTGGTTGAAAGTTGGTATCCCACGTTCGGTGTGTTACCGGCACAACACTTGCCCACTTGGTTCGAGACCGGGGCTGGTGCCACCGTCTCTNCTGGAAGGAAAATGTCCACTTTGCTTGGTGAGGGAAAATTTTCGTCACCACTGGAAGATTATATTGAAGCTGTCACTGGAAGCACCCACAAAGGGTTTGGTTTTCTCTGTGTTGTACCATTTTTCATTTGCACGGCACTTGAAATCTATACTGCACTAGTTGCAGATGTGCCGAGAAAGATATANACACAGAAGCAATGTTTGTCACATCATTTTTCACTGTAGTAAATTTTGATGAGATCAAAAAA]
[+] EMBL BQ908734 [TGCAACGATTGCAGTTCTGGGTCAGTTTTTGACGGACCCTTCTGCCAAGGCACGCTTTCTNGCACGAATGTAGTATGATACCCANCTGGTTTGGCAGTATGAATCACCTTAGATCATACCNCATACNCTAGAATATCCACGCTAACGAATANCATGATTCACGAGAAGTACCTGCACGCCACCTTTAATATTGGTTGAAAGTTGGTATCCCACGTTCGGTGTGTTACCGGCACAACACTTGCCCACTTGGTTCGAGACCGGGGCTGGTGCCACCGTCTCTNCTGGAAGGAAAATGTCCACTTTGCTTGGTGAGGGAAAATTTTCGTCACCACTGGAAGATTATATTGAAGCTGTCACTGGAAGCACCCACAAAGGGTTTGGTTTTCTCTGTGTTGTACCATTTTTCATTTGCACGGCACTTGAAATCTATACTGCACTAGTTGCAGATGTGCCGAGAAAGATATANACACAGAAGCAATGTTTGTCACATCATTTTTCACTGTAGTAAATTTTGATGAGATCAAAAAA]
consensusID : consensus_14184#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 283 fasta sequence
[TAAACATTTGCCCNTTGGTTCGAGNCCGGGGCTGGTGCCNCNTCTCTCTGGAAGGAAAATGTCCATTTGCTTGGTGAGGGAAAATTTTCGTCACATGGAAGATTATATTGAAGNTGTCACTGGAAGCACCAAAAGGGTTTGGTTTTCTCTGTGTTGTNCCATTTTTCATTTGCACGGCACTTGAAATCTATNCTGCACTAATTGCAGATGTGCCGAGAAAGATATATACACAGAAGCAATGTTTGTCNCATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU030838 [TAAACATTTGCCCNTTGGTTCGAGNCCGGGGCTGGTGCCNCNTCTCTCTGGAAGGAAAATGTCCATTTGCTTGGTGAGGGAAAATTTTCGTCACATGGAAGATTATATTGAAGNTGTCACTGGAAGCACCAAAAGGGTTTGGTTTTCTCTGTGTTGTNCCATTTTTCATTTGCACGGCACTTGAAATCTATNCTGCACTAATTGCAGATGTGCCGAGAAAGATATATACACAGAAGCAATGTTTGTCNCATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_14184#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 250 fasta sequence
[CTTGGTGAGGGAAAATTTTCGTCACATGGAAGATTATATTGAAGCTGTCCCTGGAAGCACCAAAAGGGTTTGGTTTTCTCTGTGTTGNACCNTTTTTCATTTGCCCGGCCCTTGAAATCTATNCTGCNCTAATTGCAGATGTGCCGAGAAAGATATATNCCCAGAAGCAATGTTTGTCCCATCATTTTTCNCTGTAGCAAATTTTGATGAGATCAATGGCTCCAGCTCCTGTGAAAAAAAAAAAAAAAAA]
[+] EMBL AT003537 [CTTGGTGAGGGAAAATTTTCGTCACATGGAAGATTATATTGAAGCTGTCCCTGGAAGCACCAAAAGGGTTTGGTTTTCTCTGTGTTGNACCNTTTTTCATTTGCCCGGCCCTTGAAATCTATNCTGCNCTAATTGCAGATGTGCCGAGAAAGATATATNCCCAGAAGCAATGTTTGTCCCATCATTTTTCNCTGTAGCAAATTTTGATGAGATCAATGGCTCCAGCTCCTGTGAAAAAAAAAAAAAAAAA]
[+] EMBL AT003700 [CTTGGTGAGGGAAAATTTTNGTCNCATGGAAGATTATATTGAAGCTGTCNCTGGAAGCACCAAAAGGGTTTGGTTTTCTCTGTGTTGNACCATTTTTCATTTGCNCGGCNCTTGAAATNTATACTGCNCTAATTGCAGATGTGCCGAGAAAGATATATACNCAGAAGCAATGTTTGTCNCATCNTTTTTCNCTGTAGCAAATTTTNATGAGATCAATGGCTCCAGCTCCTGTGAAAAAAAAAAAAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14184#2 ------------------------------------------------------------
consensus_14184#3 ------------------------------------------------------------
consensus_14184#4 ------------------------------------------------------------
consensus_14184#0 ACGCGCTGAGGCCTGTGAAAGGAAAGGAAAGGAAAGGAGAGGAGTGGAGGCGAGGCGGCG 60
consensus_14184#1 ------------------------------------------------------------
consensus_14184#2 ------------------------------------------------------------
consensus_14184#3 ------------------------------------------------------------
consensus_14184#4 ------------------------------------------------------------
consensus_14184#0 GCGGCGGCGAGATCCACACATGACACATCTCGAGGCGCGCGGCACCACCACCGCCATGGG 120
consensus_14184#1 ------------------------------------------------------------
consensus_14184#2 ------------------------------------------------------------
consensus_14184#3 ------------------------------------------------------------
consensus_14184#4 ------------------------------------------------------------
consensus_14184#0 AGCGCTCGAGGAGGCCCACCTCGCCGCCGCCATCTCCGCGTGCGAGTGCGAGTGCTACGA 180
consensus_14184#1 ------------------------------------------------------------
consensus_14184#2 ------------------------------------------------------------
consensus_14184#3 ------------------------------------------------------------
consensus_14184#4 ------------------------------------------------------------
consensus_14184#0 GGAGGAGGAGGAGGATGACCTCGTCGAGGGGGACGGCGAGGCGGCGGCCGCCGACGCCAT 240
consensus_14184#1 ------------------------------------------------------------
consensus_14184#2 ------------------------------------------------------------
consensus_14184#3 ------------------------------------------------------------
consensus_14184#4 ------------------------------------------------------------
consensus_14184#0 GGAGCCGGCGGTGCGCGCGCTGCTGCTGGGGCTCGGCGAGGACGCGCGCCGGGAGGGGCT 300
consensus_14184#1 ------------------------------------------------------------
consensus_14184#2 ------------------------------------------------------------
consensus_14184#3 ------------------------------------------------------------
consensus_14184#4 ------------------------------------------------------------
consensus_14184#0 GCGGAGGACGCCCAAGCGCGTCGCCAAGGCCTTCCGCGACGGCACCCGAGGTTACAAGCA 360
consensus_14184#1 ------------------------------------------------------------
consensus_14184#2 ------------------------------------------------------------
consensus_14184#3 ------------------------------------------------------------
consensus_14184#4 ------------------------------------------------------------
consensus_14184#0 AAAAGTAAAGGACATTGTGCAGGGGGCTCTCTTTCCTGAGGTTGGTGTTGACAAGAGGAC 420
consensus_14184#1 ------------------------------------------------------------
consensus_14184#2 ------------------------------------------------------------
consensus_14184#3 ------------------------------------------------------------
consensus_14184#4 ------------------------------------------------------------
consensus_14184#0 TGGTTCTGCTGGAGGAACTGGAGGGCAAGTTGTTGTTCGTGATATTGATCTTTTCTCATA 480
consensus_14184#1 ------------------------------------------------------------
consensus_14184#2 ------------------------------------------------------------
consensus_14184#3 ------------------------------------------------------------
consensus_14184#4 ------------------------------------------------------------
consensus_14184#0 CTGTGAGTCATGCTTACTTCCATTCAGCATACAATTCCATGTTGGCTATGTGCCCTCTGG 540
consensus_14184#1 ------------------------------------------------------------
consensus_14184#2 ------------------------------------------------------------
consensus_14184#3 ------------------------------------------------------------
consensus_14184#4 ------------------------------------------------------------
consensus_14184#0 TGGAAGGGTTGTTGGGTTAAGCAAGCTTTCGAGAGTAGCTGATGTCTTCGCCAAGAGGTT 600
consensus_14184#1 ------------------------------------------------------------
consensus_14184#2 ------------------------------------------------------------
consensus_14184#3 ------------------------------------------------------------
consensus_14184#4 ------------------------------------------------------------
consensus_14184#0 GCAGAATCCTCAAAGACTGGCTAGTGAAGTTTGTGGTGCATTGCATGCTAGCATACAACC 660
consensus_14184#1 ------------------------------------------------------------
consensus_14184#2 ------------------------------------------------------------
consensus_14184#3 ------------------------------------------------------------
consensus_14184#4 ------------------------------------------------------------
consensus_14184#0 TGCTGGTGTGGCTGTTGCTCTGCAATGTTGGCACATACCTTTGCCAGAAAACTTGAAATG 720
consensus_14184#1 ------------------------------------------------------------
consensus_14184#2 ------------------------------------------------------------
consensus_14184#3 ------------------------------------------------------------
consensus_14184#4 ------------------------------------------------------------
consensus_14184#0 CAAGACTTTGCAAGGTTGGATTAGCACTTCACATTCATCTCGCTCTGGAGTTTTTGAGGG 780
consensus_14184#1 ------------------------------------------------------------
consensus_14184#2 ------------------------------------------------------------
consensus_14184#3 ------------------------------------------------------------
consensus_14184#4 ------------------------------------------------------------
consensus_14184#0 TGAGAGCAGCTCTTTTTGGAATGACTTCTCAGCCCTTCTTAAGCTTAGGGGCATAGACAT 840
consensus_14184#1 ------------------------------------------------------------
consensus_14184#2 ------------------------------------------------------------
consensus_14184#3 ------------------------------------------------------------
consensus_14184#4 ------------------------------------------------------------
consensus_14184#0 GGAGAGGGACAGCCATTCTGCCTCCATAGCTTGGTGCCCTTTAAGGTCTCATGATGTCCC 900
consensus_14184#1 ------------------------------------------------------------
consensus_14184#2 ------------------------------------------------------------
consensus_14184#3 ------------------------------------------------------------
consensus_14184#4 ------------------------------------------------------------
consensus_14184#0 AGTCTGCAATGGGCACTGCAAGAAGGCTACAACCAACGGTGCAATTTCACCCAAATCAGT 960
consensus_14184#1 ------------------------------------------------------------
consensus_14184#2 ------------------------------------------------------------
consensus_14184#3 ------------------------------------------------------------
consensus_14184#4 ------------------------------------------------------------
consensus_14184#0 ACCAGCTCCCTCTAATATGGTTTCTGCTGTTAGCTCAATGCTCTTATCCCTTGGAGAGGA 1020
consensus_14184#1 ------------------------------------------------------------
consensus_14184#2 ------------------------------------------------------------
consensus_14184#3 ------------------------------------------------------------
consensus_14184#4 ------------------------------------------------------------
consensus_14184#0 TCCCTTCAGGAAAGAACTTGTAGGTACTCCTCAGCGTTACGTGCAATGGCTGATGAAGTT 1080
consensus_14184#1 ------------------------------------------------------------
consensus_14184#2 ------------------------------------------------------------
consensus_14184#3 ------------------------------------------------------------
consensus_14184#4 ------------------------------------------------------------
consensus_14184#0 CAGAGCATGTAACCTAGATGTGAAGCTGAATGGCTTTACACTCAATAATTTGAGTGTATA 1140
consensus_14184#1 ------------------------------------------------------------
consensus_14184#2 ------------------------------------------------------------
consensus_14184#3 ------------------------------------------------------------
consensus_14184#4 ------------------------------------------------------------
consensus_14184#0 CCAGAGTCCAGCTGGAGATGCTGCTGACCATCGAGCAATCCATTCTGAGCTGCATTTGCC 1200
consensus_14184#1 ------------------------------------------------------------
consensus_14184#2 ------------------------------------------------------------
consensus_14184#3 ------------------------------------------------------------
consensus_14184#4 ------------------------------------------------------------
consensus_14184#0 ATTTTGTGCGCAGTGCGAGCACCATCTTCTGCCGTTCTATGGAGTAGTGCATATTGGCTA 1260
consensus_14184#1 ------------------------------------------------------------
consensus_14184#2 ------------------------------------------------------------
consensus_14184#3 ------------------------------------------------------------
consensus_14184#4 ------------------------------------------------------------
consensus_14184#0 CCTTGACGGCGGAGATGGTGAAGTGATTGATCGATCTCATTTTCAGGCCTTGGTTCATTT 1320
consensus_14184#1 ------------------------------------------------------------
consensus_14184#2 ------------------------------------------------------------
consensus_14184#3 ------------------------------------------------------------
consensus_14184#4 ------------------------------------------------------------
consensus_14184#0 TTATGGATGCAAGCTTCAGGTTCAAGAGAGAATGACAAGGCAGATAGCTGAAGCAGTTTA 1380
consensus_14184#1 ------------------------------------------------------------
consensus_14184#2 ------------------------------------------------------------
consensus_14184#3 ------------------------------------------------------------
consensus_14184#4 ------------------------------------------------------------
consensus_14184#0 TTCTGTTTCGCATTGTGGGGCCATAGTTGTTGTAGAAGCTAACCACATTTGCATGATATC 1440
consensus_14184#1 ------------------------------------------------------------
consensus_14184#2 ------------------------------TGCAACGATTGCAGTTCTGGGTCAGTTTTT 30
consensus_14184#3 ------------------------------------------------------------
consensus_14184#4 ------------------------------------------------------------
consensus_14184#0 AAGGGGAATAGAGAAAATCAGGAGTAGCACTGCAACGATTGCAGTTCTGGGTCAGTTTTT 1500
consensus_14184#1 ----------------------------GAGTGACCCCTTAAACCACCGCCATGGGAGCG 32
consensus_14184#2 GACGGACCCTTCTGCCAAGGCACGCTTTCTNGCACGAATGTAGTATGATACCCANCTGGT 90
consensus_14184#3 ------------------------------------------------------------
consensus_14184#4 ------------------------------------------------------------
consensus_14184#0 GACGGACCCTTCTGCCAAGGCACGCTTTCTGC-----AGAACGTAGTAGATACAACTGGT 1555
consensus_14184#1 CTCGAGGAGGCCCACCTCGCCGCCGCCATCTCCGCGTGCGAGTGCGAGTGCTACGAGGAG 92
consensus_14184#2 TTGGCAGTATGAATCACCTTAGATCATACCNCATACNCTAGAATATCCACGCTAACGAAT 150
consensus_14184#3 ------------------------------------------------------------
consensus_14184#4 ------------------------------------------------------------
consensus_14184#0 TTGGCAGTATGAATCACTT------AGATCATACAAACTAGAATATCAGCTA-------- 1601
consensus_14184#1 GAGGAGGAGGATGACCTCGTCCAGGGGGACGGCGAGGCGGCGGCCGCCGACTCCATGGAG 152
consensus_14184#2 ANCATGATTCACGAGAAGTACCTGCACGCCACCTTTAATATTGGTTGAAAGTTGGTATCC 210
consensus_14184#3 ------------------------------------------------------------
consensus_14184#4 ------------------------------------------------------------
consensus_14184#0 AGAATACATGATTCAGAGAAGTACCGCAGCCACTTTAATAT-GGTTGAAAGTTGGTACCC 1660
consensus_14184#1 CCGGCGGTGCGCGCGCTGCTGCTGGGGCTCGGCGAGGACGCGCGCCGGGAGGGGCTGCAG 212
consensus_14184#2 CACGTTCGGTGTGTTACCGGCACAACACTTGCCCACTTGGTTCGAGAC--CGGGGCTGGT 268
consensus_14184#3 ---------------------TAAACATTTGCCCN-TTGGTTCGAGNC--CGGGGCTGGT 36
consensus_14184#4 ------------------------------------------------------------
consensus_14184#0 A--GTTCGGTGTGTTACCGGC-AAACA-TTGCCCA-TTGGTTCGAGAC--CGGGGCTGGT 1713
consensus_14184#1 AGGACGCCCAAGCGCGTCGCCAAGGCCTTCCGCGACGGCACCCGAGGTTACAAGCAAAAA 272
consensus_14184#2 GCCACCGTCTCTNCTGGAAGGAAAATGTCCACTTTGCTTGGTGAGGG-AAAATTTTCGTC 327
consensus_14184#3 GCCNCN-TCTCTC-TGGAAGGAAAATGTCCA-TTTGCTTGGTGAGGG-AAAATTTTCGTC 92
consensus_14184#4 ------------------------------------CTTGGTGAGGG-AAAATTTTCGTC 23
consensus_14184#0 GCCACG-TCTCTC-TGGAAGGAAAATGTCCA-TTTGCTTGGTGAGGG-AAAATTTTCGTC 1769
consensus_14184#1 GTAAAGGACATTGTGCAGGGGGCTCTCTTTCCTGAGGTTGGTGTTGACAAGAGGACTGGT 332
****** * ** * *
consensus_14184#2 ACCACTGGAAGA-TTATATTG-AAGCTGTCACTGGAAGCACCCACAAAGGGTTTGGTTTT 385
consensus_14184#3 ACA--TGGAAGA-TTATATTG-AAGNTGTCACTGGAAGCACCAA--AAGGGTTTGGTTTT 146
consensus_14184#4 ACA--TGGAAGA-TTATATTG-AAGCTGTCCCTGGAAGCACCAA--AAGGGTTTGGTTTT 77
consensus_14184#0 ACA--TGGAAGA-TTATATTG-AAGCTGTCACTGGAAGCACCAA--AAGGGTTTGGTTTT 1823
consensus_14184#1 TCTGCTGGAGGAACTGGAGGGCAAGTTGTTGTTCGTGATATTGA----TCTTTTCTCATA 388
* **** ** * * * *** *** * * * * *** *
consensus_14184#2 CTCTGTGTTGTACCATTTTTCATTT-GCACGGCACTTGAAAT---CTATAC-TGCACTAG 440
consensus_14184#3 CTCTGTGTTGTNCCATTTTTCATTT-GCACGGCACTTGAAAT---CTATNC-TGCACTAA 201
consensus_14184#4 CTCTGTGTTGNACCNTTTTTCATTT-GCCCGGCCCTTGAAAT---CTATNC-TGCNCTAA 132
consensus_14184#0 CTCTGTGTTGTACCATTTTTCATTT-GCACGGCACTTGAAAT---CTATAC-TGCACTAA 1878
consensus_14184#1 CTGTGAGTCATGCTTACTTCCATTCAGCATACAATTCCATGTTGGCTATGTGCCCTCTGG 448
** ** ** * ** **** ** * * * **** * **
consensus_14184#2 TTGCAGATGTGCCGAGAAAGATATANACACAGAAGCAATGTTTGTCA-CATCATTTTTCA 499
consensus_14184#3 TTGCAGATGTGCCGAGAAAGATATATACACAGAAGCAATGTTTGTCN-CATCA------A 254
consensus_14184#4 TTGCAGATGTGCCGAGAAAGATATATNCCCAGAAGCAATGTTTGTCC-CATCATTTTTCN 191
consensus_14184#0 TTGCAGATGTGCCGAGAAAGATATATACACAGAAGCAATGTTTGTCA-CATCATTTTTCA 1937
consensus_14184#1 TGGAAGGGTTGTTGGGTTAAGCAAGCTTTCGAGAGTAGCTGATGTCTTCGCCAAGAGGTT 508
* * ** ** * * * * * ** * **** * **
consensus_14184#2 CTGTAGTAAATTTTGATGAGATCAAAAAA------------------------------- 528
consensus_14184#3 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------------------- 283
consensus_14184#4 CTGTAGCAAATTTTGATGAGATCAATGGCTCCAGCTCCTGTGAAAAAAAAAAAAAAAAA- 250
consensus_14184#0 CTGTAGCAAATTTTGATGAGATCAATGGCTCCAGCTCCTGTGAAATGAATGTGATTGTTC 1997
consensus_14184#1 GCAGAATCCTCAAAGACTGGCTAGGGAAGTTTGTGGTGCATTGCATGCTATCATACAACC 568
* *
consensus_14184#2 ------------------------------------------------------------
consensus_14184#3 ------------------------------------------------------------
consensus_14184#4 ------------------------------------------------------------
consensus_14184#0 TCTTGAGTGTTGACCCGCCAAAAA------------------------------------ 2021
consensus_14184#1 TGCTGGTGTGGCTGTTGCTCTGCAATGTTGGCACATACCTTTGCCAGAGAACTTGAGATG 628
consensus_14184#2 ------------------------------------------------------------
consensus_14184#3 ------------------------------------------------------------
consensus_14184#4 ------------------------------------------------------------
consensus_14184#0 ------------------------------------------------------------
consensus_14184#1 CAAGACTTTGCAAGGTTGGATTATCACTTCACATTCATCTCGCTCTGGAGTTATTGACGG 688
consensus_14184#2 ----------------------------
consensus_14184#3 ----------------------------
consensus_14184#4 ----------------------------
consensus_14184#0 ----------------------------
consensus_14184#1 TGACAGCAACTCTTTTAGGAATGACTTC 716
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||