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Oryza sativa
cluster # 14186 cluster # 14186       Sequences # 15       consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14186#0 length = 1527 sequences # 11  
consensus_14186#1 length = 553 sequences # 1  
 consensus_14186#2 length = 300 sequences # 1  
consensus_14186#3 length = 290 sequences # 1  
consensus_14186#4 length = 265 sequences # 1  
consensusID : consensus_14186#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 1527
fasta sequence 
                              [CATTTATTCTCATCTCTTTCCTGCAGCCAAGTCAGTTTGCATTCGCACAAAGCCAGTTGCAAGCATGCAGCAAGAACAGGCAGACGGCCGGGAGATCGTCATCGCCGGCGCCGGCCTCGCCGGGCTCGCAGTGGCCCTCGGACTGCACAGGAAAGGACTGAGGAGCGTGGTGCTGGAGTCGTCGCCGACGCTGCGGACGTCCGGGTTGGCGTTCATCACATGGACGAACGCCTTCCGCGCGCTTGATGCCCTTGGGGTAGGCGACAAGATGAGGAGCCAGCACCAGCAGATCCAGAGGTTGAATGTCA-TGTCTTCAGCTACTG-GAGAAATAGTGCAAGAAATTGATCTGAGGGCGCAAGGCAAACGGGGAACCCATGAGGCACGCTGCGTGAG-CCGCACCGCGC-TGCTAC-TGGCGTTGGAGGAAGAGCTCCCAAGAGGCACCATCCGCTAC-TCC-TCCAAGA-TCGTC-TCGA-TCGAGG--AAGACGGCAACG-CCAAGATCCTCCATCTGTCTGACGGATCGACTCTCAGAGCAAAGGTGCTGATCGGGTGCGACGGGATCAACTCGGTGGTGGCGAGATGGCTGGGGCTCGCGAAGCCGTCGGACTCGGGGCACACGGCCACGCGCGGACGCGCCAAGTACCCGGACGGCCATGGCTTCGAGCCCAGGTTTCTGCAGTTGGTCGGCCAGGGATTCCGTGCAGGCATGGTGCCCTGCAACGACACCGACGTCTACTGGTTCTTCACGTGGTCTCCTTCCCCAGATGATAAGGATGTCGACAAGAGTTCAGCCGCGACGAAGCAGTTCGTGCTGACAAAGCTCCGGAGCACGAACGTGCCACCACAGGTGCTCGAGGCGGTCGAGCGGAGCGAGATGAACGACGTGCTCGCGGCGCCGCTGCGGTTCCGATCGCCGCTGTCGCTCCCGTTCGCGAGCATCAGCAAGGGGAACGTGTGCGTCGCCGGCGACGCGCTCCACCCGACGACGCCGGACCTGGCGCAGGGCGCGTGCACGGCGCTGGAGGACGCCGTCGTCCTGGCGAGGTGCCTCGGCGAGGC-GCTGCTGCTCCGTACCGGCGACTGCGCCGCCGAGGAGAGTCACCGGGTCGTCGAGGCCGC-GCTGCGCCGGTACGCGGACGCCCGGCGGTGGAGGAGTGCGCAGCTG-ACCGGTGCGTCGTACGCGGTGGGGTTCGTGCAGCAGAGCGACCACCCCGCCGTGGGCTTCCTGCGTGACAAGCTGTTGTCCGGGGTGCTCGCCAAGACGCTGCTCATGATGCCCGACTACGATTGCGGCACGCTCTCGAGTTCCGGTGCTTGTTGACGTGATTTGGGTTTTGGCCGCCGCCCAGCTGCAAGTCTGCAACCTGTAATCATATCGTCGTGCTG-TTTGTGATGTTTGTCTGTATGTGCTCCGTCTGTTTTACTGTTCCGTCACGTGTCAATGATCCCAAACCTGTGAAACGCTCCTTTTTGTGTGCAGAAAAATAAAGTCGAGTGCATTTGGGTTTTAAAAAAGNNCACAAAATAAACCTA]

[+] EMBL AK103088             [CATTTATTCTCATCTCTTTCCTGCAGCCAAGTCAGTTTGCATTCGCACAAAGCCAGTTGCAAGCATGCAGCAAGAACAGGCAGACGGCCGGGAGATCGTCATCGCCGGCGCCGGCCTCGCCGGGCTCGCAGTGGCCCTCGGACTGCACAGGAAAGGACTGAGGAGCGTGGTGCTGGAGTCGTCGCCGACGCTGCGGACGTCCGGGTTGGCGTTCATCACATGGACGAACGCCTTCCGCGCGCTTGATGCCCTTGGGGTAGGCGACAAGATGAGGAGCCAGCACCAGCAGATCCAGAGGTTGAATGTCA TGTCTTCAGCTACTG GAGAAATAGTGCAAGAAATTGATCTGAGGGCGCAAGGCAAACGGGGAACCCATGAGGCACGCTGCGTGAG CCGCACCGCGC TGCTAC TGGCGTTGGAGGAAGAGCTCCCAAGAGGCACCATCCGCTAC TCC TCCAAGA TCGTC TCGA TCGAGG  AAGACGGCAACG CCAAGATCCTCCATCTGTCTGACGGATCGACTCTCAGAGCAAAGGTGCTGATCGGGTGCGACGGGATCAACTCGGTGGTGGCGAGATGGCTGGGGCTCGCGAAGCCGTCGGACTCGGGGCACACGGCCACGCGCGGACGCGCCAAGTACCCGGACGGCCATGGCTTCGAGCCCAGGTTTCTGCAGTTGGTCGGCCAGGGATTCCGTGCAGGCATGGTGCCCTGCAACGACACCGACGTCTACTGGTTCTTCACGTGGTCTCCTTCCCCAGATGATAAGGATGTCGACAAGAGTTCAGCCGCGACGAAGCAGTTCGTGCTGACAAAGCTCCGGAGCACGAACGTGCCACCACAGGTGCTCGAGGCGGTCGAGCGGAGCGAGATGAACGACGTGCTCGCGGCGCCGCTGCGGTTCCGATCGCCGCTGTCGCTCCCGTTCGCGAGCATCAGCAAGGGGAACGTGTGCGTCGCCGGCGACGCGCTCCACCCGACGACGCCGGACCTGGCGCAGGGCGCGTGCACGGCGCTGGAGGACGCCGTCGTCCTGGCGAGGTGCCTCGGCGAGGC GCTGCTGCTCCGTACCGGCGACTGCGCCGCCGAGGAGAGTCACCGGGTCGTCGAGGCCGC GCTGCGCCGGTACGCGGACGCCCGGCGGTGGAGGAGTGCGCAGCTG ACCGGTGCGTCGTACGCGGTGGGGTTCGTGCAGCAGAGCGACCACCCCGCCGTGGGCTTCCTGCGTGACAAGCTGTTGTCCGGGGTGCTCGCCAAGACGCTGCTCATGATGCCCGACTACGATTGCGGCACGCTCTCGAGTTCCGGTGCTTGTTGACGTGATTTGGGTTTTGGCCGCCGCCCAGCTGCAAGTCTGCAACCTGTAATCATATCGTCGTGCTG TTTGTGATGTTTGTCTGTATGTGCTCCGTCTGTTTTACTGTTCCGTCACGTGTCAATGATCCCAAACCTGTGAAACGCCCCTTTTTGTGTGCAGAAAAATAAAGTCGAGTGCATTTGGG                            ]
[+] EMBL AU069432             [                 TTCCTGCAGCCAAGTCAGTTTGCATTCGCACAAAGCCAGTTGCAAGCATGCAGCAAGAACAGGCAGACGGCCGGGAGATCGTCATCGCCGGCGCCGGCCTCGCCGGGCTCGCAGTGGCCCTCGGACTGCACAGGAAAGGACTGAGGAGCGTGGTGCTGGAGTCGTCGCCGACGCTGCGGACGTCCGGGTTGGCGTTCATCACATGGACGAACGCCTTCCGCGCGCTTGATGCCCTTGGGGTAGGCGACAAGATGAGGAGCCAGCACCAGCAGATCCAGAAGTTGAATGTCA TGTCTTCAGCTACTN GAGAAATAGTGCAAGAAATTGATCTGAAGGCGCAANGCAAACGGGGAACCCATGAGGCACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AU063409             [                 TTCCTGCAGCCAAGTCAGTTTGCATTCGCACAAAGCCAGTTGCAAGCATGCAGCAAGAACAGGCAGACGGCCGGGAGATCGTCATCGCCGGCGCCGGCCTCGNCGNNCTCGCAGTGGCCCTCGGACTGCACAGGAAAGGACTGAGGAGCGTGGTGCTGGAGTCGTCGTCGACGCTNCGGACGTCCGGGTTGGCGTTCATCACATGGACGAACGACTTCCGCGCGCTTNATGCCCTTGGGNTAGGCGACAAGATGNGGAGCCAGNACCAGCAGATCCAGAGGTTGAATGTCA TGTCTTCAGCTACTGCCAGAAATAGTGCAAGAAATTGATCTGAGGGCGCAAGGCAAACGGGGNACCCATGAGGCACGTTGNGTTAG CCGCACCG GCTTGTTAC TGGCGTTGNAGGAAGAG TCCCAAGAGGCAACATCCGGTAG TCC TCCAAGA TCGT  TTGA TCGAGG  AAG CGGCAANG  CAAGg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AU166971             [                 TTCCTGCAGCCAAGTCAGTTTGCATTCGCACAAAGCCAGTTGCAAGCATGCAGCAAGAACAGGCAGACGGCCGGGAGATCGTCATCGCCGGCGCCGGCCTCGCCGGGCTCGCAGTGGCCCTCGGACTGCACAGGAAAGGACTGAGGAGCGTGGTGCTGGAGTCGTCGCCGACGCTGCGGACGTCCGGGTTGGCGTTCATCACATGGACGAACGCCTTCCGCGCGCTTGATGCCCTTGGGGTAGGCGACAAGATGAGGAGCCAGCACCAGCAGATCCAGAGGTTGAATGNCATTGTCTTCAGCTACTG GAGAAATAGTGCAAGAAATTGATCTGAGGGCGCAAGGCAAACGGGGAACCCATGAGGCACGCTGCGTGAGCCCGCACCCNGC TGCTAC TGGCGTTGGAGGAAGAGCTCCCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL C28924               [                   CCTGCAGCCAAGTCAGTTTGCATTCGCACAAAGCCAGTTGCAAGCATGCAGCAAGAACAGGCAGACGGCCGGGAGATCGTCATCGCCGGCGCCGGCCTCGCCGNGCTCGCAGTGGCCCTCGGACTGCACAGGAAAGGACTGAGGAGCGTGGTGCTGGAGTCGTCGCCGACGCTGCGGACGTCCGGNTTGGCGTTCATCACATGGACGAACGCCTTCCGGGNGCTTAATGCCCTTGGGGTAGGCGACAAGATGAGGAGCCAGCACCAGCAGATCCAGAGGTTGAATGTNA TGTCTTCAGCTACTG GAGAAATAGTGCAAGAAATTGATCTGAGGGCGCAAGGCAACGGGGGAACCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL C27346               [                                 AGTTTGCATTCGCACAAAGCCAGTTGCAAGCATGCAGCAAGAACAGGCAGACGGCCGGGAGATCGTNATCGCCGGCNCCGGCCTCGCCGTGCTCGCAGTGGCCCTCGGACTGCACAGGAAAGGACTGAGGAGCGTGGTGCTGGAGTCGTCGCCGACGCTGCGGACGTCCGGTTTGGCGTTCATCACATGGACGAACGCTTTCCGNGCGCTTAATGCCCTTGGGGTAGGCGACAAGATGAGGAGCCAGCACCAGCAGATCCAGAGGTTGANTGTNA TGTTTTCAGCTACTG GAGAAATAGTGCAAGAAATTNATCTGAGGGCGCAAGGCAAACGGGGAACCCATt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL C27316               [                                                                                                                                                             CTGAGGAGCGTGGTGCTGGAGTCGTCGCCGACGCTGCGGACGTCCGGGTTGGCGTTCATCACATGGACGAACGCCTTCCGNGCGCTTNATGCCCTTGGGGTAGGCGACAAGATGAGGAGCCAGCACCAGCAGATCCAGAGGTTGAATGTCA TGTCTTCAGCTACTG GAGAAATAGTGCAAGAAATTGATCTGAGGGCGCAAGGCAAACGGGGAACCCATGAGGCACGCTNCGTGAN CCGCACCGCGCTTGCTACTTGGCGTTGGAGGAAGAGCTCCCAAGAGGCACCATCCGCTACTTCCTTCAAAGATTCGTCTTCGATTCGAGGGNAAGACGGCAACGNCAAAGATCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL C27078               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ACGTGCTCGCGGCGCCGCTGCGGTTCCGATCGCCGCTGTCGCTCCCGTTCGCNAGCATCAGCAAGGGGAACGTGTGCNTCGCCGGCNACG GCTCCACCCGACGACGCCGGACCTGGCGCAGGGCGCGTGCACGGCGCTGGAGGACGCCGTCGTCCTGGCGAGGTGCCTCGGCGAGGC GCTGCTGCTCCGTACCGGCGACTNCGCCGCCGAGGAGAGTCACCGGGTCGTCGAGGCCGC GCTGCGCCGGTACGCGGACGCCCGGCGGTGGAGGAGTTCGCANTTN ACCGGTGCGT                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AU093135             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GGAACGTGTGAGTCGCNGGCGACGCGCTCCACCCGACGACGCCGGACCTGGCGCAGGGCGCGTGCACGGCGCTGNAGGACGCCGTCGTCCTGGCGAGGTGCCTCGGCNAGGCGGCTGCTGCTCCGTACCGGCGACTGCGCCGCCGAGGAGAGTCACCGGGTCGTCGAGGCCGCAGCTGCGCCGGTACGCGGACGCCCGGCGGTGNAGGAGTGCGCAGCTG ACCGGTGCGTCGTACGCGGTGGGGTTCGTGCAGCAGAGCGACCACCCCGCCGTGGGCTTCCTGCGTGACAAGCTGTTGTCCGGGGTGCTCGCCAAGACGCTGCTCATGATGCCCGACTACGATTGCGGCACGCTCTCGAGTTCCGGTGCTTGTTGACGTGATTTGGGTTTTGGCCGCCGCCCAGCTGCAAGTCTGCAACCTGTAATCATATCGTCGTGCTG TTTGTGATGTTTGTCTGTATGTGCTCCGTCTGTTTTACTGTTCCGTCACGTGTCAATGATCCCAAACCTGTGAAACGCTCCTTTTTGTGTGCAGAAAAATAAAGTCGAGTGCATTTGGGTTTTAAAAAA                  ]
[+] EMBL C27038               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AACGTGTGCTTCGCCGGCGACG GCTCCACCCGACGACGCCGGACCTGGCGCAGGGCGCGTGCACGGCGCTGGAGGACGCCGTCNTCCTGGCGAGGTGCCTCGGCGAGGC GCTGCTGCTCCGTACCGGCGACTGCGCCGCCGAGGAGAGTCACCGGNTCGTCGAGGCCGC GCTGCGCCGGTACGCGGACGCCCGGCGGTGGAGGAGTGCGCA NTGAACCGGTGCNTCGTACGCGGTGGGGTTCGTGCAGCAGAGCGACCAACCCGCCGTG                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BE040493             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GCGCCGGTACGCGGACGCCCGGCGGTGGAGGAGTGCGCAGCTG ACCGGTGCGTCGTACGCGGTGGGGTTCGTGCAGCAGAGCGACCACCCCGCCGTGGGCTTCCTGCGTGACAAGCTGTTGTCCGGGGTGCTCGCCAAGACGCTGCTCATGATGCCCGACTACGATTGCGGCACGCTCTCGAGTTCCTGTGCTTGTTGACGTGATTTGGGTTTTGGCCGCCGCCCAGCTGCAAGTCTGCAACCTGTAATCATATCGTCGTGCTGTTTTGTGATGTTTGTCTGTATGTGCTCCGTCTGTTTTACTGTTCCGTCACGTGTCAATGATCCCAAACCTGTGAAACGCTCCTTTTTGTGTGCAGAAAAATAAAGTCG GTGCATTTGGGTTTTTGGTCGGNNCACAAAATAAACCTA]




>consensus_14186#0
CATTTATTCTCATCTCTTTCCTGCAGCCAAGTCAGTTTGCATTCGCACAAAGCCAGTTGC
AAGCATGCAGCAAGAACAGGCAGACGGCCGGGAGATCGTCATCGCCGGCGCCGGCCTCGC
CGGGCTCGCAGTGGCCCTCGGACTGCACAGGAAAGGACTGAGGAGCGTGGTGCTGGAGTC
GTCGCCGACGCTGCGGACGTCCGGGTTGGCGTTCATCACATGGACGAACGCCTTCCGCGC
GCTTGATGCCCTTGGGGTAGGCGACAAGATGAGGAGCCAGCACCAGCAGATCCAGAGGTT
GAATGTCATGTCTTCAGCTACTGGAGAAATAGTGCAAGAAATTGATCTGAGGGCGCAAGG
CAAACGGGGAACCCATGAGGCACGCTGCGTGAGCCGCACCGCGCTGCTACTGGCGTTGGA
GGAAGAGCTCCCAAGAGGCACCATCCGCTACTCCTCCAAGATCGTCTCGATCGAGGAAGA
CGGCAACGCCAAGATCCTCCATCTGTCTGACGGATCGACTCTCAGAGCAAAGGTGCTGAT
CGGGTGCGACGGGATCAACTCGGTGGTGGCGAGATGGCTGGGGCTCGCGAAGCCGTCGGA
CTCGGGGCACACGGCCACGCGCGGACGCGCCAAGTACCCGGACGGCCATGGCTTCGAGCC
CAGGTTTCTGCAGTTGGTCGGCCAGGGATTCCGTGCAGGCATGGTGCCCTGCAACGACAC
CGACGTCTACTGGTTCTTCACGTGGTCTCCTTCCCCAGATGATAAGGATGTCGACAAGAG
TTCAGCCGCGACGAAGCAGTTCGTGCTGACAAAGCTCCGGAGCACGAACGTGCCACCACA
GGTGCTCGAGGCGGTCGAGCGGAGCGAGATGAACGACGTGCTCGCGGCGCCGCTGCGGTT
CCGATCGCCGCTGTCGCTCCCGTTCGCGAGCATCAGCAAGGGGAACGTGTGCGTCGCCGG
CGACGCGCTCCACCCGACGACGCCGGACCTGGCGCAGGGCGCGTGCACGGCGCTGGAGGA
CGCCGTCGTCCTGGCGAGGTGCCTCGGCGAGGCGCTGCTGCTCCGTACCGGCGACTGCGC
CGCCGAGGAGAGTCACCGGGTCGTCGAGGCCGCGCTGCGCCGGTACGCGGACGCCCGGCG
GTGGAGGAGTGCGCAGCTGACCGGTGCGTCGTACGCGGTGGGGTTCGTGCAGCAGAGCGA
CCACCCCGCCGTGGGCTTCCTGCGTGACAAGCTGTTGTCCGGGGTGCTCGCCAAGACGCT
GCTCATGATGCCCGACTACGATTGCGGCACGCTCTCGAGTTCCGGTGCTTGTTGACGTGA
TTTGGGTTTTGGCCGCCGCCCAGCTGCAAGTCTGCAACCTGTAATCATATCGTCGTGCTG
TTTGTGATGTTTGTCTGTATGTGCTCCGTCTGTTTTACTGTTCCGTCACGTGTCAATGAT
CCCAAACCTGTGAAACGCTCCTTTTTGTGTGCAGAAAAATAAAGTCGAGTGCATTTGGGT
TTTAAAAAAGNNCACAAAATAAACCTA

consensusID : consensus_14186#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 553
fasta sequence 
                              [CGACGCGCTCCACCCGACGACGCCGGACCTGGCNCAGGGCGCCGTNCACGGCGCTGGAGGACGCCGTCGTCCTGGCGAGGTGCCCTCGGCGAGGCGCTGCTGGCTCCGTACCCGGCGACTGCGCCGCCGAGGAGAGTCACCGGGTCGTCGAGGCCCGCNTGCGCCGGTACGCGGACGCCCGGCGGTGGAGGAGTGCGCAGCTGACCGGTGCGTCGTACGCGGTGGGGTTCGTGCAGCAGAGCGACCACCCCGCCGTGGGCTTCCTGCGTGACAAGCTGTTGTCCGGGGTGCTCGCCAAGACGCTGCTCATGATGCCCGACTACGATTGCGGCACGCTCTCGAGTTCCGGTGCTTGTTGACGTGATTTGGGTTTTGGCCGCCGCCCAGCTGCAAGTCTGCAACCTGTAATCATATCGTCGTGCTGTTTGTGATGTTTGTCTGTATGTGCTCCGTCTGTTTTACTGTTCCGTCACGTGTCAATGATCCCAAACCTGTGAAACGCTCCTTTTTGTGTGCAGAAAAATAAAGTCGAGTGCATTAAAAAAAAAAAAAA]

[+] EMBL AU100740             [CGACGCGCTCCACCCGACGACGCCGGACCTGGCNCAGGGCGCCGTNCACGGCGCTGGAGGACGCCGTCGTCCTGGCGAGGTGCCCTCGGCGAGGCGCTGCTGGCTCCGTACCCGGCGACTGCGCCGCCGAGGAGAGTCACCGGGTCGTCGAGGCCCGCNTGCGCCGGTACGCGGACGCCCGGCGGTGGAGGAGTGCGCAGCTGACCGGTGCGTCGTACGCGGTGGGGTTCGTGCAGCAGAGCGACCACCCCGCCGTGGGCTTCCTGCGTGACAAGCTGTTGTCCGGGGTGCTCGCCAAGACGCTGCTCATGATGCCCGACTACGATTGCGGCACGCTCTCGAGTTCCGGTGCTTGTTGACGTGATTTGGGTTTTGGCCGCCGCCCAGCTGCAAGTCTGCAACCTGTAATCATATCGTCGTGCTGTTTGTGATGTTTGTCTGTATGTGCTCCGTCTGTTTTACTGTTCCGTCACGTGTCAATGATCCCAAACCTGTGAAACGCTCCTTTTTGTGTGCAGAAAAATAAAGTCGAGTGCATTAAAAAAAAAAAAAA]




>consensus_14186#1
CGACGCGCTCCACCCGACGACGCCGGACCTGGCNCAGGGCGCCGTNCACGGCGCTGGAGG
ACGCCGTCGTCCTGGCGAGGTGCCCTCGGCGAGGCGCTGCTGGCTCCGTACCCGGCGACT
GCGCCGCCGAGGAGAGTCACCGGGTCGTCGAGGCCCGCNTGCGCCGGTACGCGGACGCCC
GGCGGTGGAGGAGTGCGCAGCTGACCGGTGCGTCGTACGCGGTGGGGTTCGTGCAGCAGA
GCGACCACCCCGCCGTGGGCTTCCTGCGTGACAAGCTGTTGTCCGGGGTGCTCGCCAAGA
CGCTGCTCATGATGCCCGACTACGATTGCGGCACGCTCTCGAGTTCCGGTGCTTGTTGAC
GTGATTTGGGTTTTGGCCGCCGCCCAGCTGCAAGTCTGCAACCTGTAATCATATCGTCGT
GCTGTTTGTGATGTTTGTCTGTATGTGCTCCGTCTGTTTTACTGTTCCGTCACGTGTCAA
TGATCCCAAACCTGTGAAACGCTCCTTTTTGTGTGCAGAAAAATAAAGTCGAGTGCATTA
AAAAAAAAAAAAA

consensusID : consensus_14186#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 300
fasta sequence 
                              [ACNCNGGGNCTCGCNGTGGCCCTCGNACTGCACAGGTACACAACCTTTTTNNCTTCTAANTGCCTAGCGACGTGTTCCAACTCCATGGGAGCCGATCGAAGTGCGGCACTGCGTCAGGAAAGGACTGAGGAGCGTGGTGCTGGAGTCGTCGCCGACGCTGCGGACGTCCGGTTTGGCGTTCATCACATGGACGAACGCCTTCCGCGCGCTTAATGCCCTTGGGGTAGGCGACAAGATGAGGAGCCAGCACCAGCAGATCCAGAGGTTGAATGTNATGTCTTCAGCTACTGGAGAAATAGT]

[+] EMBL C26561               [ACNCNGGGNCTCGCNGTGGCCCTCGNACTGCACAGGTACACAACCTTTTTNNCTTCTAANTGCCTAGCGACGTGTTCCAACTCCATGGGAGCCGATCGAAGTGCGGCACTGCGTCAGGAAAGGACTGAGGAGCGTGGTGCTGGAGTCGTCGCCGACGCTGCGGACGTCCGGTTTGGCGTTCATCACATGGACGAACGCCTTCCGCGCGCTTAATGCCCTTGGGGTAGGCGACAAGATGAGGAGCCAGCACCAGCAGATCCAGAGGTTGAATGTNATGTCTTCAGCTACTGGAGAAATAGT]




>consensus_14186#2
ACNCNGGGNCTCGCNGTGGCCCTCGNACTGCACAGGTACACAACCTTTTTNNCTTCTAAN
TGCCTAGCGACGTGTTCCAACTCCATGGGAGCCGATCGAAGTGCGGCACTGCGTCAGGAA
AGGACTGAGGAGCGTGGTGCTGGAGTCGTCGCCGACGCTGCGGACGTCCGGTTTGGCGTT
CATCACATGGACGAACGCCTTCCGCGCGCTTAATGCCCTTGGGGTAGGCGACAAGATGAG
GAGCCAGCACCAGCAGATCCAGAGGTTGAATGTNATGTCTTCAGCTACTGGAGAAATAGT

consensusID : consensus_14186#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 290
fasta sequence 
                              [ATGATGCCCGACTACGATTNCGGCACGCTNTCGAGTTCCGGTGCTTGTTNACGTGATTTGGGTTTTGGCCNCCGCCCAGCTGCAAGTNTGCAACCTGTAATCANATCGTCGTGCTGTTTGTNATGTTTGTCTGTATGTGCNCCGTCTGTTTTACTGTTCCGTCACGTGTCAATGATCCCNAACCTGTNAAACGCTCCNTTTTGTGTGCANAAAAATAAAGTCGAGTGCATTTGGGTTTTTGGTCGGANATCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU092996             [ATGATGCCCGACTACGATTNCGGCACGCTNTCGAGTTCCGGTGCTTGTTNACGTGATTTGGGTTTTGGCCNCCGCCCAGCTGCAAGTNTGCAACCTGTAATCANATCGTCGTGCTGTTTGTNATGTTTGTCTGTATGTGCNCCGTCTGTTTTACTGTTCCGTCACGTGTCAATGATCCCNAACCTGTNAAACGCTCCNTTTTGTGTGCANAAAAATAAAGTCGAGTGCATTTGGGTTTTTGGTCGGANATCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_14186#3
ATGATGCCCGACTACGATTNCGGCACGCTNTCGAGTTCCGGTGCTTGTTNACGTGATTTG
GGTTTTGGCCNCCGCCCAGCTGCAAGTNTGCAACCTGTAATCANATCGTCGTGCTGTTTG
TNATGTTTGTCTGTATGTGCNCCGTCTGTTTTACTGTTCCGTCACGTGTCAATGATCCCN
AACCTGTNAAACGCTCCNTTTTGTGTGCANAAAAATAAAGTCGAGTGCATTTGGGTTTTT
GGTCGGANATCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_14186#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 265
fasta sequence 
                              [TATCTGTCTACTCCCCTTCCCCCCTGTCGTGTGATGCGCACACCTGAAAACACCTGTNACGCAGGGGAACCCATGAGGCACGCTGCGTGANCGCACCGCGCTGCTACTGGCGTTGGAGGAAGAGCTCCCAAGAGGCACCATCCGCTACTCCTCCAAGATCGTNTCGATCGAGGAAGACGGCAACGCAAGATCCTCCATCTGTCTGACGGATCGACTCTCAGAGCAAAGGTGCTGATCGGGTGCGACGGGATCAACTCGGTGGTGG]

[+] EMBL C28287               [TATCTGTCTACTCCCCTTCCCCCCTGTCGTGTGATGCGCACACCTGAAAACACCTGTNACGCAGGGGAACCCATGAGGCACGCTGCGTGANCGCACCGCGCTGCTACTGGCGTTGGAGGAAGAGCTCCCAAGAGGCACCATCCGCTACTCCTCCAAGATCGTNTCGATCGAGGAAGACGGCAACGCAAGATCCTCCATCTGTCTGACGGATCGACTCTCAGAGCAAAGGTGCTGATCGGGTGCGACGGGATCAACTCGGTGGTGG]




>consensus_14186#4
TATCTGTCTACTCCCCTTCCCCCCTGTCGTGTGATGCGCACACCTGAAAACACCTGTNAC
GCAGGGGAACCCATGAGGCACGCTGCGTGANCGCACCGCGCTGCTACTGGCGTTGGAGGA
AGAGCTCCCAAGAGGCACCATCCGCTACTCCTCCAAGATCGTNTCGATCGAGGAAGACGG
CAACGCAAGATCCTCCATCTGTCTGACGGATCGACTCTCAGAGCAAAGGTGCTGATCGGG
TGCGACGGGATCAACTCGGTGGTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14186#2      ------------------------------------------------------------
consensus_14186#4      ------------------------------------------------------------
consensus_14186#0      ------------------------------------------------------------
consensus_14186#1      CGACGCGCTCCACCCGACGACGCCGGACCTGGCNCAGGGCGCCGTNCACGGCGCTGGAGG 60
consensus_14186#3      ------------------------------------------------------------
                                                                                   

consensus_14186#2      ------------------------------------------------------------
consensus_14186#4      ------------------------------------------------------------
consensus_14186#0      ------------------------------------------------------------
consensus_14186#1      ACGCCGTCGTCCTGGCGAGGTGCCCTCGGCGAGGCGCTGCTGGCTCCGTACCCGGCGACT 120
consensus_14186#3      ------------------------------------------------------------
                                                                                   

consensus_14186#2      ------------------------------------------------------------
consensus_14186#4      ------------------------------------------------------------
consensus_14186#0      ------------------------------------------------------------
consensus_14186#1      GCGCCGCCGAGGAGAGTCACCGGGTCGTCGAGGCCCGCNTGCGCCGGTACGCGGACGCCC 180
consensus_14186#3      ------------------------------------------------------------
                                                                                   

consensus_14186#2      ------------------------------------------------------------
consensus_14186#4      ------------------------------------------------------------
consensus_14186#0      ------------------------------------------------------------
consensus_14186#1      GGCGGTGGAGGAGTGCGCAGCTGACCGGTGCGTCGTACGCGGTGGGGTTCGTGCAGCAGA 240
consensus_14186#3      ------------------------------------------------------------
                                                                                   

consensus_14186#2      -----------------------------------------------------ACNCNGG 7
consensus_14186#4      ----------------------------------------------------TATCTGTC 8
consensus_14186#0      -------------CATTTATTCTCATCTCTTTCCTGCAGCCAAGTCAGTTTGCATTCGCA 47
consensus_14186#1      GCGACCACCCCGCCGTGGGCTTCCTGCGTGACAAGCTGTTGTCCGGGGTGCTCGCCAAGA 300
consensus_14186#3      ------------------------------------------------------------
                                                                                   

consensus_14186#2      GNCTCGCNGTGGCCCTCGNACTGCACAGGTACACAACCTTTTTNNCTTCTAANTGCCTAG 67
consensus_14186#4      TACTCCCCTTCCCCCCTGTCGTGT---GATGCGCA--------CACCTGAAAACACCT-G 56
consensus_14186#0      CAAAGCCAGTTGCAAGCATGCAGCAAGAACAGGCAGA------CGGCCGGGAGATCGTCA 101
consensus_14186#1      CGCTGCTCATGATGCCCGACTACGATTGCGGCACGCTCT----CGAGTTCCGGTGCTTGT 356
consensus_14186#3      --------ATGATGCCCGACTACGATTNCGGCACGCTNT----CGAGTTCCGGTGCTTGT 48
                                *                       *                     * *  

consensus_14186#2      CGACGTGTTCCAACTCCATGGGA---GCCGATCGAA-GTGCGGCACTGCGTCAGGAAAGG 123
consensus_14186#4      TNACGCAGGGGAAC-CCATGAGGCACGCTGCGTGANCGCACCGCGCTGCTACTGGCGTTG 115
consensus_14186#0      TCGCCGGCGCCGGCCTCGCCGGGCTCGCAG--TGGC--CCTCGGACTGC-ACAGGAAAGG 156
consensus_14186#1      TGACGTGATTTGGG-TTTTGGCC---GCCGCCCAGC--TGCAAGTCTGCAACCTGTAATC 410
consensus_14186#3      TNACGTGATTTGGG-TTTTGGCC---NCCGCCCAGC--TGCAAGTNTGCAACCTGTAATC 102
                          *                       * *                ***  *  *     

consensus_14186#2      ACTGAGGAGCGTGGTGCTGGAGTCGTCGCCGACGCTGCGGACGTCCGGTTTGGCGTTCAT 183
consensus_14186#4      GAGGAAGAGCTCCCAAGAGGCACCATCCGCTACTCCTCCAAGATCGTNTCGATCGAGGAA 175
consensus_14186#0      ACTGAGGAGCGTGGTGCTGGAGTCGTCGCCGACGCTGCGGACGTCCGGGTTGGCGTTCAT 216
consensus_14186#1      ATATCGTCGTGCTGT-TTGTGATGTTTGTCTGTATGTGCTCCGTCTGTTTTACTGTTC-C 468
consensus_14186#3      ANATCGTCGTGCTGT-TTGTNATGTTTGTCTGTATGTGCNCCGTCTGTTTTACTGTTC-C 160
                               *         *      *   *             **         *     

consensus_14186#2      CACATGGACG-AACGCCTTCCGCGCGCTTAATGC-CCTTGGGGTAGGCGACAAGATGAGG 241
consensus_14186#4      GACGGCAACGCAAGATCCTCCATCTGTCTGACGG-ATCGACTCTCAGAGCAAAGGTGCTG 234
consensus_14186#0      CACATGGACG-AACGCCTTCCGCGCGCTTGATGC-CCTTGGGGTAGGCGACAAGATGAGG 274
consensus_14186#1      GTCACGTGTCAATGATCCCAAACCTGTGAAACGCTCCTTTTTGTGTGCAGAAAAATAAAG 528
consensus_14186#3      GTCACGTGTCAATGATCCCNAACCTGTNAAACGCTCCNTTTTGTGTGCANAAAAATAAAG 220
                         *        *    *        *    * *          *  *    **  *   *

consensus_14186#2      AGCCAGCACCAGCAGATCCAGAGGTTGAATGTNATGTCTTCAGCTACTGGAGAAATAGT- 300
consensus_14186#4      ATCGGGTGCGACGGGATCAACTCGGTGGTGG----------------------------- 265
consensus_14186#0      AGCCAGCACCAGCAGATCCAGAGGTTGAATGTCATGTCTTCAGCTACTGGAGAAATAGTG 334
consensus_14186#1      -TCGAGTGCATT---------------------AAAAAAAAAAAAAA------------- 553
consensus_14186#3      -TCGAGTGCATTTGGGTTTTTGGTCGGANATCGAAAAAAAAAAAAAAAAAAAAAAAAAAA 279
                         *  *  *                                                   

consensus_14186#2      ------------------------------------------------------------
consensus_14186#4      ------------------------------------------------------------
consensus_14186#0      CAAGAAATTGATCTGAGGGCGCAAGGCAAACGGGGAACCCATGAGGCACGCTGCGTGAGC 394
consensus_14186#1      ------------------------------------------------------------
consensus_14186#3      AAAAAAAAAAA------------------------------------------------- 290
                                                                                   

consensus_14186#2      ------------------------------------------------------------
consensus_14186#4      ------------------------------------------------------------
consensus_14186#0      CGCACCGCGCTGCTACTGGCGTTGGAGGAAGAGCTCCCAAGAGGCACCATCCGCTACTCC 454
consensus_14186#1      ------------------------------------------------------------
consensus_14186#3      ------------------------------------------------------------
                                                                                   

consensus_14186#2      ------------------------------------------------------------
consensus_14186#4      ------------------------------------------------------------
consensus_14186#0      TCCAAGATCGTCTCGATCGAGGAAGACGGCAACGCCAAGATCCTCCATCTGTCTGACGGA 514
consensus_14186#1      ------------------------------------------------------------
consensus_14186#3      ------------------------------------------------------------
                                                                                   

consensus_14186#2      ------------------------------------------------------------
consensus_14186#4      ------------------------------------------------------------
consensus_14186#0      TCGACTCTCAGAGCAAAGGTGCTGATCGGGTGCGACGGGATCAACTCGGTGGTGGCGAGA 574
consensus_14186#1      ------------------------------------------------------------
consensus_14186#3      ------------------------------------------------------------
                                                                                   

consensus_14186#2      ------------------------------------------------------------
consensus_14186#4      ------------------------------------------------------------
consensus_14186#0      TGGCTGGGGCTCGCGAAGCCGTCGGACTCGGGGCACACGGCCACGCGCGGACGCGCCAAG 634
consensus_14186#1      ------------------------------------------------------------
consensus_14186#3      ------------------------------------------------------------
                                                                                   

consensus_14186#2      ------------------------------------------------------------
consensus_14186#4      ------------------------------------------------------------
consensus_14186#0      TACCCGGACGGCCATGGCTTCGAGCCCAGGTTTCTGCAGTTGGTCGGCCAGGGATTCCGT 694
consensus_14186#1      ------------------------------------------------------------
consensus_14186#3      ------------------------------------------------------------
                                                                                   

consensus_14186#2      ------------------------------------------------------------
consensus_14186#4      ------------------------------------------------------------
consensus_14186#0      GCAGGCATGGTGCCCTGCAACGACACCGACGTCTACTGGTTCTTCACGTGGTCTCCTTCC 754
consensus_14186#1      ------------------------------------------------------------
consensus_14186#3      ------------------------------------------------------------
                                                                                   

consensus_14186#2      ------------------------------------------------------------
consensus_14186#4      ------------------------------------------------------------
consensus_14186#0      CCAGATGATAAGGATGTCGACAAGAGTTCAGCCGCGACGAAGCAGTTCGTGCTGACAAAG 814
consensus_14186#1      ------------------------------------------------------------
consensus_14186#3      ------------------------------------------------------------
                                                                                   

consensus_14186#2      ------------------------------------------------------------
consensus_14186#4      ------------------------------------------------------------
consensus_14186#0      CTCCGGAGCACGAACGTGCCACCACAGGTGCTCGAGGCGGTCGAGCGGAGCGAGATGAAC 874
consensus_14186#1      ------------------------------------------------------------
consensus_14186#3      ------------------------------------------------------------
                                                                                   

consensus_14186#2      ------------------------------------------------------------
consensus_14186#4      ------------------------------------------------------------
consensus_14186#0      GACGTGCTCGCGGCGCCGCTGCGGTTCCGATCGCCGCTGTCGCTCCCGTTCGCGAGCATC 934
consensus_14186#1      ------------------------------------------------------------
consensus_14186#3      ------------------------------------------------------------
                                                                                   

consensus_14186#2      ------------------------------------------------------------
consensus_14186#4      ------------------------------------------------------------
consensus_14186#0      AGCAAGGGGAACGTGTGCGTCGCCGGCGACGCGCTCCACCCGACGACGCCGGACCTGGCG 994
consensus_14186#1      ------------------------------------------------------------
consensus_14186#3      ------------------------------------------------------------
                                                                                   

consensus_14186#2      ------------------------------------------------------------
consensus_14186#4      ------------------------------------------------------------
consensus_14186#0      CAGGGCGCGTGCACGGCGCTGGAGGACGCCGTCGTCCTGGCGAGGTGCCTCGGCGAGGCG 1054
consensus_14186#1      ------------------------------------------------------------
consensus_14186#3      ------------------------------------------------------------
                                                                                   

consensus_14186#2      ------------------------------------------------------------
consensus_14186#4      ------------------------------------------------------------
consensus_14186#0      CTGCTGCTCCGTACCGGCGACTGCGCCGCCGAGGAGAGTCACCGGGTCGTCGAGGCCGCG 1114
consensus_14186#1      ------------------------------------------------------------
consensus_14186#3      ------------------------------------------------------------
                                                                                   

consensus_14186#2      ------------------------------------------------------------
consensus_14186#4      ------------------------------------------------------------
consensus_14186#0      CTGCGCCGGTACGCGGACGCCCGGCGGTGGAGGAGTGCGCAGCTGACCGGTGCGTCGTAC 1174
consensus_14186#1      ------------------------------------------------------------
consensus_14186#3      ------------------------------------------------------------
                                                                                   

consensus_14186#2      ------------------------------------------------------------
consensus_14186#4      ------------------------------------------------------------
consensus_14186#0      GCGGTGGGGTTCGTGCAGCAGAGCGACCACCCCGCCGTGGGCTTCCTGCGTGACAAGCTG 1234
consensus_14186#1      ------------------------------------------------------------
consensus_14186#3      ------------------------------------------------------------
                                                                                   

consensus_14186#2      ------------------------------------------------------------
consensus_14186#4      ------------------------------------------------------------
consensus_14186#0      TTGTCCGGGGTGCTCGCCAAGACGCTGCTCATGATGCCCGACTACGATTGCGGCACGCTC 1294
consensus_14186#1      ------------------------------------------------------------
consensus_14186#3      ------------------------------------------------------------
                                                                                   

consensus_14186#2      ------------------------------------------------------------
consensus_14186#4      ------------------------------------------------------------
consensus_14186#0      TCGAGTTCCGGTGCTTGTTGACGTGATTTGGGTTTTGGCCGCCGCCCAGCTGCAAGTCTG 1354
consensus_14186#1      ------------------------------------------------------------
consensus_14186#3      ------------------------------------------------------------
                                                                                   

consensus_14186#2      ------------------------------------------------------------
consensus_14186#4      ------------------------------------------------------------
consensus_14186#0      CAACCTGTAATCATATCGTCGTGCTGTTTGTGATGTTTGTCTGTATGTGCTCCGTCTGTT 1414
consensus_14186#1      ------------------------------------------------------------
consensus_14186#3      ------------------------------------------------------------
                                                                                   

consensus_14186#2      ------------------------------------------------------------
consensus_14186#4      ------------------------------------------------------------
consensus_14186#0      TTACTGTTCCGTCACGTGTCAATGATCCCAAACCTGTGAAACGCTCCTTTTTGTGTGCAG 1474
consensus_14186#1      ------------------------------------------------------------
consensus_14186#3      ------------------------------------------------------------
                                                                                   

consensus_14186#2      -----------------------------------------------------
consensus_14186#4      -----------------------------------------------------
consensus_14186#0      AAAAATAAAGTCGAGTGCATTTGGGTTTTAAAAAAGNNCACAAAATAAACCTA 1527
consensus_14186#1      -----------------------------------------------------
consensus_14186#3      -----------------------------------------------------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)