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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14190#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1532 fasta sequence
[AGGAGCTATAAAAAGAAGCAGGAAGCCACTCGCTCTCCTCACAGCCACAGCTCGCCATCGTCGTCGTCGTCGTCGTCGTCTCCGGCTCCGGCAAGAGAGCTAGTAGTGAGTAGTAGAAAGAAGAAGAGGCAAATTAATAGTAATGGAGGGGAAGGAGGAGGATGTGAGGCTGGGGGCGAACAGGTACACGGAGAGGCAGCCGATCGGGACGGCGGCGCAGGGGGCGGAGGAGAAGGACTACCGGGAGCCGCCGGCGGCGCCGGTGTTCGAGGTGGAGGAGCTGACGTCGTGGTCGTTCTACCGGGCGGGGATCGCGGAGTTCGTGGCGACGTTCCTGTTCCTGTACATCAGCATCCTGACGGTGATGGGGGTGAACAAGTCGGCGTCCAAGTGCGCCACCGTGGGGATCCAGGGCATCGCGTGGTCGTTCGGCGGCATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGGCGGGCACATCAACCCGGCGGTGACGTTCGGGCTGTTCCTGGCGCGGAAGCTGTCGCTGACGCGGGCGGTGTTCTACATGGCGATGCAGTGCCTGGGCGCCATCTGCGGCGCCGGCGTGGTGAAGGGGTTCCAGCGGGGGCTGTACATGGGCTCCGGCGGCGGCGCCAACGCCGTGAACCCGGGGTACACCAAGGGGGACGGGCTCGGGGCGGAGATCGTGGGCACCTTCGTCCTCGTCTACACCGTCTTCTCCGCCACCGACGCCAAGCGCAACGCCAGGGACTCCCACGTCCCCATCCTGGCGCCGCTCCCCATCGGCTTCGCCGTCTTCCTCGTCCACCTCGCCACCATCCCCATCACC-GGCACCGGC-ATCAACCCCGCCCGCAGCCTCGGCGCCGCCA-TC-GTC-TAT-AACCGCGCCCACGCATGGCACGA-CCACTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTACCACGTGGTGGTGATCAGAGCAATCCCCTTCAAGAGCCGGGACTAATTAATTACCATGCATCATCATCTTAATTAAGCGATAATTACTCTGAAATAATCAACC-GAGTTGATGCTGCAAGATGATGGAGGATCAAGTCTCTACAGTACTACGTGTGTTATTACCGTCTGGTGATCGATGAAGCTAGCCGCTGCATAATTATAAGCGCGTTTATATATATCTGATGTTGCTGTAATTATATCTATGTGTACGTAGTATGTTTGGTGTGAGAAATGGTACTTGTGTGTGCGGAGGCATGCATGTTCTTGGTTGCACGCCTTCAGCTATATATAGCTTTGCATCAATTCCATCT-CC-AATGTGAATTTTACTAGTTACTATTTTTA-----AAAAAAAAAATCCCCTCTTATGTTATGTGTGATCAAGTATTTGATCCCCTCTCGTTAAGTAAATGTTAAGCATGCGTATTTGTAAACTTGTTAGTGCTATACTGATATGCTATCGGCCCTATCGGCGCCATTATTGCCGGGTCTTCAAATGCCACGGTGTATGAAAAAACTTACGAATTGTGCAAAAA]
[+] EMBL AK102174 [AGGAGCTATAAAAAGAAGCAGGAAGCCACTCGCTCTCCTCACAGCCACAGCTCGCCATCGTCGTCGTCGTCGTCGTCGTCTCCGGCTCCGGCAAGAGAGCTAGTAGTGAGTAGTAGAAAGAAGAAGAGGCAAATTAATAGTAATGGAGGGGAAGGAGGAGGATGTGAGGCTGGGGGCGAACAGGTACACGGAGAGGCAGCCGATCGGGACGGCGGCGCAGGGGGCGGAGGAGAAGGACTACCGGGAGCCGCCGGCGGCGCCGGTGTTCGAGGTGGAGGAGCTGACGTCGTGGTCGTTCTACCGGGCGGGGATCGCGGAGTTCGTGGCGACGTTCCTGTTCCTGTACATCAGCATCCTGACGGTGATGGGGGTGAACAAGTCGGCGTCCAAGTGCGCCACCGTGGGGATCCAGGGCATCGCGTGGTCGTTCGGCGGCATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGGCGGGCACATCAACCCGGCGGTGACGTTCGGGCTGTTCCTGGCGCGGAAGCTGTCGCTGACGCGGGCGGTGTTCTACATGGCGATGCAGTGCCTGGGCGCCATCTGCGGCGCCGGCGTGGTGAAGGGGTTCCAGCGGGGGTTGTACATGGGCTCCGGCGGCGGCGCCAACGCCGTGAACCCGGGGTACACCAAGGGGGACGGGCTCGGGGCGGAGATCGTGGGCACCTTCGTCCTCGTCTACACCGTCTTCTCCGCCACCGACGCCAAGCGCAACGCCAGGGACTCCCACGTCCCCATCCTGGCGCCGCTCCCCATCGGCTTCGCCGTCTTCCTCGTCCACCTCGCCACCATCCCCATCACC GGCACCGGC ATCAACCCCGCCCGCAGCCTCGGCGCCGCCA TC GTC TAT AACCGCGCCCACGCATGGCACGA CCACTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTACCACGTGGTGGTGATCAGAGCAATCCCCTTCAAGAGCCGGGACTAATTAATTACCATGCACCATCATCTTAATTAAGCGATAATTACTCTGAAATAATCAACC GAGTTGATGCTGCAAGATGATGGAGGATCAAGTCTCTACAGTACTACGTGTGTTATTACCGTCTGGTGATCGATGAAGCTAGCCGCTGCATAATTATAAGCGCGTTTATATATATCTGATGTTGCTGTAATTATATCTATGTGTACGTAGTATGTTTGGTGTGAGAAATGGTACTTGTGTGTGCGGAGGCATGCATGTTCTTGGTTGCACGCCTTCAGCTATATATAGCTTTG ]
[+] EMBL CA756499 [ GTCGTCGTCGTCGTCGTCGTCTCCGGCTCCGGCAAGAGAGCTAGTAGTGAGTAGTAGAAAGAAGAAGAGGCAAATTAATAGTAATGGAGGGGAAGGAGGAGGATGTGAGGCTGGGGGCGAACAGGTACACGGAGAGGCAGCCGATCGGGACGGCGGCGCAGGGGGCGGAGGAGAAGGACTACCGGGAGCCGCCGGCGGCGCCGGTGTTCGAGGTGGAGGAGCTGACGTCGTGGTCGTTCTACCGGGCGGGGATCGCGGAGTTCGTGGCGACGTTCCTGTTCCTGTACATCAGCATCCTGACGGTGATGGGGGTGAACAAGTCGGCGTCCAAGTGCGCCACCGTGGGGATCCAGGGCATCGCGTGGTCGTTCGGCGGCATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGGCGGGCACATCAACCCGGCGGTGACGTTCGGGCTGTTCCTGGCGCGAAAGCTGTCGCTGACGCGGGCGGTGTTCTACATGGCGATGCAGTGGCTGTGCGCCATCTGCGGTGCCGGCGTGGTGGAGGGGTTCCAGGGGCGGTTGTACATGGGCTCCGGGGGCGGCGCCAACGCCGTGAACCC GGGTACCCCAg ]
[+] EMBL BE607372 [ AGAGGCAGCCGATCGGGACGGCGGCGCAGGGGGCGGAGGAGAAGGACTACCGGGAGCCGCCGGCGGCGCCGGTGTTCGAGGCGGAGGAGCTGACGTCGTGGTCGTTCTACCGGGCGGGGATCGCGGAGTTCGTGGCGACGTTCCTGTTCCTGTACATCAGCATCCTGACGGTGATGGGGGTGAACAAGTCGGCGTCCAAGTGCGCCACCGTGGGGATCCAGGGCATCGCGTGGTCGTTCGGCGGCATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGGCGGGCACATCAACCCGGCGGTGACGTTCGGGCTGTTCCTGGCGCGGAAGCTGTCGCTGACGCGGGCGGTGTTCTACATGGCGATGCAGTGCCTGGGCGCCATCTGCGGCGCCGGCGTGGTGAAGGGGTTCCAGCGGGGGCTGTACATGGGCTCCGGCGGCGG ]
[+] EMBL CB618084 [ GTGGCCACTTTCCTGTTCCTGTACATCAGCATCCTGACGGTGATGGGGGTGAACAAGTCGGCGTCCAAGTGCGCCACCGTGGGGATCCAGGGCATCGCGTGGTCGTTCGGCGGCATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGGCGGGCACATCAACCCGGCGGTGACGTTCGGGCTGTTCCTGGCGCGGAAGCTGTCGCTGACGCGGGCGGTGTTCTACATGGCGATGCAGTGCCTGGGCGCCATCTGCGGCGCCGGCGTGGTGAAGGGGTTCCAGCGGGGGCTGTACATGGGCTCCGGCGGCGGCGCCAACGCCGTGAACCCGGGGTACACCAAGGGGGACGGGCTCGGGGCGGAGATCGTGGGCACCTTCGTCCTCGTCTACACCGTCTTCTCCGCCACCGACGCCAAGCGCAACGCCAGGGACTCCCACGTCCCCATCCTGGCGCCGCTCCCCATCGGCTTCGCCGTCTTCCTCGTCCACCTCGCCACCATCCCCATCACC GGCACCGGC ATCAACCCCGCCCGCAGCCTCGGCGCCGCCA TC GTC TAT AACCGCGCCCACGCATGGCACGA CCACTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTACCACGTGGTGGTGATCAGAGCAATCCCCTTCAAGAGCCGGGACTAATTAATTACCATGCATCATCATCTTAATTAAGCGATAATTACTCTGAAATAATCAACC GAGTTGATGCTGCAAGATGATGGAGGATCAAGTCTCTACAGTACTACG ]
[-] EMBL CB618085 [ GCTGTCGCTGACGCGGGCGGTGTTCTACATGGCGATGCAGTGCCTGGGCGCCATCTGCGGCGCCGGCGTGGTGAAGGGGTTCCAGCGGGGGCTGTACATGGGCTCCGGCGGCGGCGCCAACGCCGTGAACCCGGGGTACACCAAGGGGGACGGGCTCGGGGCGGAGATCGTGGGCACCTTCGTCCTCGTCTACACCGTCTTCTCCGCCACCGACGCCAAGCGCAACGCCAGGGACTCCCACGTCCCCATCCTGGCGCCGCTCCCCATCGGCTTCGCCGTCTTCCTCGTCCACCTCGCCACCATCCCCATCACC GGCACCGGC ATCAACCCCGCCCGCAGCCTCGGCGCCGCCA TC GTC TAT AACCGCGCCCACGCATGGCACGA CCACTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTACCACGTGGTGGTGATCAGAGCAATCCCCTTCAAGAGCCGGGACTAATTAATTACCATGCATCATCATCTTAATTAAGCGATAATTACTCTGAAATAATCACCC GAGTTGATGCTGCAAGATGATGGAGGATCAAGTCTCTACAGTACTACGTGTGTTATTACCGTCTGGTGATCGATGAAGCTAGCCGCTGCATAATTATAAGCGCGTTTATATATATCTGATGTTGCTGTAATTATATCTATGTGTACGTAGTATGTTTGGTGTGAGAAATGGTACTTGTGTGTGCGGAGGCATGCATGTTCTTGGTTGCACGCCTTCAGCTATATATAGCTTTGCATCAAT ]
[+] EMBL CK085184 [ CCAAGCGCAACGCCAGGGACTCCCACGTCCCCATCCTGGCGCCGCTCCCCATCGGCTTCGCCGTCTTCCTCGTCCACCTCGCCACCATCCCCATCACC GGCACCGGC ATCAACCCCGCCCGCAGCCTCGGCGCCGCCA TC GTC TAT AACCGCGCCCACGCATGGCACGA CCACTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTACCACGTGGTGGTGATCAGAGCAATCCCCTTCAAGAGCCGGGACTAATTAATTACCATGCACCATCATCTTAATTAAGCGATAATTACTCTGAAATAATCAACC GAGTTGATGCTGCAAGATGATGGAGGATCAAGTCTCTACAGTACTACGTGTGTTATTACCGTCTGGTGATCGATGAAGCTAGCCGCTGCATAATTATAAGCGCGTTTATATATATCTGATGTTGCTGTAATTATATCTATGTGTACGTAGTATGTTTGGTGTGAGAAATGGTACTTGTGTGTGCGGAGGCATGCATGTTCTTGGTTGCACGCCTTCAG ]
[+] EMBL BI796654 [ ACCATCCCCATCACCGGGCACCGGC ATCAACCCCGCCCGCAG CTCGGC CC CCA TCTGTC TAT AACCGCGCCCACGCAT GCACGA CCACTGGATTTTCT GGTT GTCC TTCATCGGAGC GCACTGGC GCCATCTACCACGT GTGGTGATCAGA CAATCCCCTTCAAGAGCCGGGACTAATTAATTACCATGCATCATCATCTTAATTAAGCGATAATTACTCTGAAATAATCAACC GAGTTGATGCTGCAAGATGATGGAGGATCAAGTCTCTACAGTACTACGTGTGTTATTACCGTCTGGTGATCGATGAAGCTAGCCGCTGCATAATTATAAGCGCGTTTATATATATCTGATGTTGCTGTAATTATATCTATGTGTACGTAGTATGTTTGGTGTGAGAAATGGTACTTGTGTGTGCGGAGGCATGCATGTTCTTGGTTGCACGCCTTCAGCTATATATAGCTTTGCATC ATTCCATCT CC AATGTGAATTTTACTAGTTACTATTTTTACCTCCAAAAAAAAAA ]
[+] EMBL CB000076 [ CC GGCACCGGC ATCAACCCCGCCCGCAGCCTCCCCTTCGCCA TC GTC TAT AACCGCGCCCACGCATGGCACGA CCACTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTACCACGTGGTGGTGATCAGAGCAATCCCCTTCAAGAGCCGGGACTAATTAATTACCATGCACCATCATCTTAATTAAGCGATAATTACTCTGAAATAATCAACCTGAGTTGATGCTGCAAGATGATGGAGGATCAAGTCTCTACAGTACTACGTGTGTTATTACCGTCTGGTGATCGATGAAGCTAGCCGCTGCATAATTATAAGTTTGTTTATATATATCTGATGTTGCTGTAATTATATCTATGTGTCGGTAGTATGTTTGGTGTGAGAAATGGTACTTGTGTGTG ]
[+] EMBL BM038795 [ GCACCGGCGATCAACCCCGCCCGCAGCCTCGGCGCCGCCAGTC GTC TAT AACCGCGCCCACGCATGGCACGA CCACTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTACCACGTGGTGGTGATCAGAGCAATCCCCTTCAAGAGCCGGGACTAATTAATTACCATGCATCATCATCTTAATTAAGCGATAATTACTCTGAAATAATC ACC GAGTTGATGCTGCAAGATGATGGAGGATCAAGTCTCTACAGTACTACGTGTGTTATTACCGTCTGGTGATCGATGAAGCTAGCCGCTGCATAATTATAAGCGCGTTTATATATATCTGATGTTGCTGTAATTATATCTATGTGTACGTAGTATGTTTGGTGTGAGAAATGGTACTTGTGTGTGCGGAGGCATGCATGTTCTTGGTTGCACGCCTTCAGCTATATATAGCTTTGCATC ATTCCATCT CC AATGTGAATTTTACTAaaaaaaa ]
[+] EMBL BI796201 [ CGGC ATCAACCCCGCCCGCAGCCTCGGCGCCGCCA TC GTC TAT AACCGCGCCCACGCATGGCACGA CCACTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACT GCGGCCATCTACCACGTGGTGGTGATCAGAGCAATCCCCTTCAAGAGCCGGGACTAATTAATTACCATGCATCATCATCTTAATTAAGCGATAATTACTCTGAAATAATCAACC GAGTTGATGCTGCAAGATGATGGAGGATCAAGTCTCTACAGTACTACGTGTGTTATTACCGTCTGGTGATCGATGAAGCTAGCCGCTGCATAATTATAAGCGCGTTTATATATATCTGATGTTGCTGTAATTATATCTATGTGTACGTAGTATGTTTGGTGTGAGAAATGGTACTTGTGTGTGCGGAGGCATGCATGTTCTTGGTTGCACGCCTTCAGCTATATATAGCTTTGCATCAATTCCATCTCCC AATGTGAATTTTACTAGTTACTATTTTTA AAAAAAAAA ]
[+] EMBL BI809246 [ CCA TC GTCTTATAAACCGCGCCCACGCATGGCACGACCCACTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTACCACGTGGTGGTGATCAGAGCAATCCCCTTCAAGAGCCGGGACTAATTAATTACCATGCATCATCATCTTAATTAAGCGATAATTACTCTGAAATAATCAACC GAGTTGATGCTGCAAGATGATGGAGGATCAAGTCTCTACAGTACTACGTGTGTTATTACCGTCTGGTGATCGATGAAGCTAGCCGCTGCATAATTATAAGCGCGTTTATATATATCTGATGTTGCTGTAATTATATCTATGTGTACGTAGTATGTTTGGTGTGAGAAATGGTACTTGTGTGTGCGGAGGCATGCATGTTCTTGGTTGCAaaaa ]
[-] EMBL CF295406 [ AGTTGATGCTGCAAGATGATGGAGGATCAAGTCTCTACAGTACTACGTGTGTTATTACCGTCTGGTGATCGATGAAGCTAGCCGCTGCATAATTATAAGCGCGTTTATATATATCTGATGTTGCTGTAATTATATCTATGTGTACGTAGTATGTTTGGTGTGAGAAATGGTACTTGTGTGTGCGGAGGCATGCATGTTCTTGGTTGCACGCCTTCAGCTATATATAGCTTTGCATCAATTCCATCT CCAAATGTGAATTTTACTAGTTACTATTTTTA CCTCCTCTCATCCCCTCTTATGTTATGTGTGATCAAGTATTTGATCCCCTCTCGTTAAGTAAATGTTAAGCATGCGTATTTGTAAACTTGTTAGTGCTATACTGATATGCTATCGGCCCTATCGGCGCCATTATTGCCGGGTCTTCAAATGCCACGGTGTATGAAAAAACTTACGAATTGTGCAAAAA]
consensusID : consensus_14190#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 910 fasta sequence
[TCGTCGTCGTCGTCGTCTCCGGCTCCGGCAAGAGAGCTAGTAGTGAGTAGTAGGAAGAAGAAGAGGCAAATTAATAGTAATGGAGGGGAAGGAGGAGGATGTGAGGCTGGGGGCGAACAGGTACACGGAGAGGCAGCCGATCGGGACGGCGGCGCAGGGGGCGGAGGAGAAGGACTACCGGGAGCCGCCGGCGGCGCCGGTGTTCGAGGCGGAGGAGCTGACGTCGTGGTCGTTCTACCGGGCGGGGATCGCGGAGTTCGTGGCGACGTTCCTGTTCCTGTACATCAGCATCCTGACGGTGATGGGGGTGAACAAGTCGGCGTCCAAGTGCGCCACCGTGGGGATCCAGGGCATCGCGTGGTCGTTCGGCGGCATGATCTTAGCGCTCGTCTACTGCACCGTCGGCATCTCCGGCGGGCACATGAACCCGGTGGTGACGTTCGGGCTGTTCCTGCCGCGGAAGCTGAGACTGACCTCTGGCGGTGACTACATAGCAAAGCCATGCCTGGGCTCTCTCACCGTGCCCCCCTCAACTTGCCTGCTACTCCTCTCTGTTCACCTTTTATTTGCCTCCTCTCATGATTGTACCTCCCTCGTCTTTCTTTTTGACTTTTATCCCCTCCCAACTCTAACTCGTTCCCTCCCTCATTTTTATTAATTCCGCTGTCGACATTTGTTTCACACGGTCTTTTATCCTTTTACCTTTTTTGTATGTTCGTGTTCTCGCCCCACTGTACCTATTCCCTCTCACCTCCTTCTCTTCTCTCTTGTTCTCGGCTTGTAGGTTCTGATGGTCGTTCGTTGTGGTATGCTGCCGGTTATGCGCTCGCAGTTGTGGTGTGTCATTTTATTTCTTACAATACACAATATTTTTATTTCTTTTTATTAGTCTTCTTAGGAGACCGCTGTT]
[+] EMBL BE039992 [TCGTCGTCGTCGTCGTCTCCGGCTCCGGCAAGAGAGCTAGTAGTGAGTAGTAGGAAGAAGAAGAGGCAAATTAATAGTAATGGAGGGGAAGGAGGAGGATGTGAGGCTGGGGGCGAACAGGTACACGGAGAGGCAGCCGATCGGGACGGCGGCGCAGGGGGCGGAGGAGAAGGACTACCGGGAGCCGCCGGCGGCGCCGGTGTTCGAGGCGGAGGAGCTGACGTCGTGGTCGTTCTACCGGGCGGGGATCGCGGAGTTCGTGGCGACGTTCCTGTTCCTGTACATCAGCATCCTGACGGTGATGGGGGTGAACAAGTCGGCGTCCAAGTGCGCCACCGTGGGGATCCAGGGCATCGCGTGGTCGTTCGGCGGCATGATCTTAGCGCTCGTCTACTGCACCGTCGGCATCTCCGGCGGGCACATGAACCCGGTGGTGACGTTCGGGCTGTTCCTGCCGCGGAAGCTGAGACTGACCTCTGGCGGTGACTACATAGCAAAGCCATGCCTGGGCTCTCTCACCGTGCCCCCCTCAACTTGCCTGCTACTCCTCTCTGTTCACCTTTTATTTGCCTCCTCTCATGATTGTACCTCCCTCGTCTTTCTTTTTGACTTTTATCCCCTCCCAACTCTAACTCGTTCCCTCCCTCATTTTTATTAATTCCGCTGTCGACATTTGTTTCACACGGTCTTTTATCCTTTTACCTTTTTTGTATGTTCGTGTTCTCGCCCCACTGTACCTATTCCCTCTCACCTCCTTCTCTTCTCTCTTGTTCTCGGCTTGTAGGTTCTGATGGTCGTTCGTTGTGGTATGCTGCCGGTTATGCGCTCGCAGTTGTGGTGTGTCATTTTATTTCTTACAATACACAATATTTTTATTTCTTTTTATTAGTCTTCTTAGGAGACCGCTGTT]
consensusID : consensus_14190#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 817 fasta sequence
[GGACGGCGGCGCAGGGGGCGGAGGAGAAGGACTACCGGGAGCCGCCGGCGGCGCCGGTGTTCGAGGCGGAGGAGCTGACGTCGTGGTCGTTCTACCGGGCGGGGATCGCGGAGTTCGTGGCGACGTTCCTGTTCCTGTACATCAGCATCCTGACGGTGATGGGGGTGAACAAGTCGGCGTCCAAGTGCGCCACCGTGGGGATCCAGGGCATCGCGTGGTCGTTCGGCGGCATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGGCGGGCACATCAACCCGGCGGTGACGTTCGGGCTGTTTCTGGCGCGGAAGCTGTCTTTGTCGCGGTCGGTGATCTACATGGCGATGCATTCTTCTGGGTTTTTAATGCTGTTCCTGTTAGCTGAAAGGGGATTAATTGTTCGTCTTTCTATTTTTCTCTCTCTTTCTCTCTTTTCTTTATTATGCTTTCTTTCTCTTCTGCTCTCTTTCGTCCCTTACTTTTTGTTTTTATTTCAATTCTCGTGTTGTTCTTTTCTTTTCTCCCCGACCACCTGCTTTAATTTTTAATTTTATTTCGCTTCATCTTGACGCCCCACTTTTAGTATTATCTCTCTTTTTTCCATTTGTTCTTAACTTTCTCTACTCTTATCCCTCCTATGTTTTTTTTTTTCTCTCTCCTTTTTCTCTACCGAGTCTCTCTGTACATCACATCATTATTTTTTTCACTTTTTTTTTATTCTCTTTATTTTTTATTATTTTCTTTTTTTATTATTTTTTGTTTCAATTTTCTATCTTTTTATTTAATCATCTTTATAATGTTTTCTTTA]
[+] EMBL BE040992 [GGACGGCGGCGCAGGGGGCGGAGGAGAAGGACTACCGGGAGCCGCCGGCGGCGCCGGTGTTCGAGGCGGAGGAGCTGACGTCGTGGTCGTTCTACCGGGCGGGGATCGCGGAGTTCGTGGCGACGTTCCTGTTCCTGTACATCAGCATCCTGACGGTGATGGGGGTGAACAAGTCGGCGTCCAAGTGCGCCACCGTGGGGATCCAGGGCATCGCGTGGTCGTTCGGCGGCATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGGCGGGCACATCAACCCGGCGGTGACGTTCGGGCTGTTTCTGGCGCGGAAGCTGTCTTTGTCGCGGTCGGTGATCTACATGGCGATGCATTCTTCTGGGTTTTTAATGCTGTTCCTGTTAGCTGAAAGGGGATTAATTGTTCGTCTTTCTATTTTTCTCTCTCTTTCTCTCTTTTCTTTATTATGCTTTCTTTCTCTTCTGCTCTCTTTCGTCCCTTACTTTTTGTTTTTATTTCAATTCTCGTGTTGTTCTTTTCTTTTCTCCCCGACCACCTGCTTTAATTTTTAATTTTATTTCGCTTCATCTTGACGCCCCACTTTTAGTATTATCTCTCTTTTTTCCATTTGTTCTTAACTTTCTCTACTCTTATCCCTCCTATGTTTTTTTTTTTCTCTCTCCTTTTTCTCTACCGAGTCTCTCTGTACATCACATCATTATTTTTTTCACTTTTTTTTTATTCTCTTTATTTTTTATTATTTTCTTTTTTTATTATTTTTTGTTTCAATTTTCTATCTTTTTATTTAATCATCTTTATAATGTTTTCTTTA]
consensusID : consensus_14190#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 299 fasta sequence
[GCATCATCATCTTAATTAAGCGATAATTACTCTGAAATAATCCACCGAGTTGATGCTGCAAGATGATGGAGGATCAAGTCTCTACAGTACTACGTGTGTTATTACCGTCTGGTGATCGATGAAGCTAGCCGCTGCATAATTATAAGCGCGTTTATATATATCTGATGTTGCTGTAATTATATCTATGTGTACGTAGTATGTTTGGTGTGAGAAATGGTACTTGTGTGTGCGGAGGCATGCATGTTCTTGGTTGCACCCCTTCAGCTAATATATATAGCTTTGCACCTCCAAAAAAAAAA]
[+] EMBL BI797578 [GCATCATCATCTTAATTAAGCGATAATTACTCTGAAATAATCCACCGAGTTGATGCTGCAAGATGATGGAGGATCAAGTCTCTACAGTACTACGTGTGTTATTACCGTCTGGTGATCGATGAAGCTAGCCGCTGCATAATTATAAGCGCGTTTATATATATCTGATGTTGCTGTAATTATATCTATGTGTACGTAGTATGTTTGGTGTGAGAAATGGTACTTGTGTGTGCGGAGGCATGCATGTTCTTGGTTGCACCCCTTCAGCTAATATATATAGCTTTGCACCTCCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14190#0 AGGAGCTATAAAAAGAAGCAGGAAGCCACTCGCTCTCCTCACAGCCACAGCTCGCCATCG 60
consensus_14190#3 ------------------------------------------------------------
consensus_14190#1 ------------------------------------------------------------
consensus_14190#2 ------------------------------------------------------------
consensus_14190#0 TCGTCGTCGTCGTCGTCGTCTCCGGCTCCGGCAAGAGAGCTAGTAGTGAGTAGTAGAAAG 120
consensus_14190#3 ------------------------------------------------------------
consensus_14190#1 ------------------------------------------------------------
consensus_14190#2 ------------------------------------------------------------
consensus_14190#0 AAGAAGAGGCAAATTAATAGTAATGGAGGGGAAGGAGGAGGATGTGAGGCTGGGGGCGAA 180
consensus_14190#3 ------------------------------------------------------------
consensus_14190#1 ------------------------------------------------------------
consensus_14190#2 ------------------------------------------------------------
consensus_14190#0 CAGGTACACGGAGAGGCAGCCGATCGGGACGGCGGCGCAGGGGGCGGAGGAGAAGGACTA 240
consensus_14190#3 ------------------------------------------------------------
consensus_14190#1 ------------------------------------------------------------
consensus_14190#2 ------------------------------------------------------------
consensus_14190#0 CCGGGAGCCGCCGGCGGCGCCGGTGTTCGAGGTGGAGGAGCTGACGTCGTGGTCGTTCTA 300
consensus_14190#3 ------------------------------------------------------------
consensus_14190#1 ------------------------------------------------------------
consensus_14190#2 ------------------------------------------------------------
consensus_14190#0 CCGGGCGGGGATCGCGGAGTTCGTGGCGACGTTCCTGTTCCTGTACATCAGCATCCTGAC 360
consensus_14190#3 ------------------------------------------------------------
consensus_14190#1 ------------------------------------------------------------
consensus_14190#2 ------------------------------------------------------------
consensus_14190#0 GGTGATGGGGGTGAACAAGTCGGCGTCCAAGTGCGCCACCGTGGGGATCCAGGGCATCGC 420
consensus_14190#3 ------------------------------------------------------------
consensus_14190#1 ------------------------------------------------------------
consensus_14190#2 ------------------------------------------------------------
consensus_14190#0 GTGGTCGTTCGGCGGCATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGGCGG 480
consensus_14190#3 ------------------------------------------------------------
consensus_14190#1 ------------------------------------------------------------
consensus_14190#2 ------------------------------------------------------------
consensus_14190#0 GCACATCAACCCGGCGGTGACGTTCGGGCTGTTCCTGGCGCGGAAGCTGTCGCTGACGCG 540
consensus_14190#3 ------------------------------------------------------------
consensus_14190#1 ------------------------------------------------------------
consensus_14190#2 ------------------------------------------------------------
consensus_14190#0 GGCGGTGTTCTACATGGCGATGCAGTGCCTGGGCGCCATCTGCGGCGCCGGCGTGGTGAA 600
consensus_14190#3 ------------------------------------------------------------
consensus_14190#1 ------------------------------------------------------------
consensus_14190#2 ------------------------------------------------------------
consensus_14190#0 GGGGTTCCAGCGGGGGCTGTACATGGGCTCCGGCGGCGGCGCCAACGCCGTGAACCCGGG 660
consensus_14190#3 ------------------------------------------------------------
consensus_14190#1 ------------------------------------------------------------
consensus_14190#2 ------------------------------------------------------------
consensus_14190#0 GTACACCAAGGGGGACGGGCTCGGGGCGGAGATCGTGGGCACCTTCGTCCTCGTCTACAC 720
consensus_14190#3 ------------------------------------------------------------
consensus_14190#1 ------------------------------------------------------------
consensus_14190#2 ------------------------------------------------------------
consensus_14190#0 CGTCTTCTCCGCCACCGACGCCAAGCGCAACGCCAGGGACTCCCACGTCCCCATCCTGGC 780
consensus_14190#3 ------------------------------------------------------------
consensus_14190#1 ------------------------------------------------------------
consensus_14190#2 ------------------------------------------------------------
consensus_14190#0 GCCGCTCCCCATCGGCTTCGCCGTCTTCCTCGTCCACCTCGCCACCATCCCCATCACCGG 840
consensus_14190#3 ------------------------------------------------------------
consensus_14190#1 ------------------------------------------------------------
consensus_14190#2 ------------------------------------------------------------
consensus_14190#0 CACCGGCATCAACCCCGCCCGCAGCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGC 900
consensus_14190#3 ------------------------------------------------------------
consensus_14190#1 -----------------------------------TCGTCGTCGTCGTCGTCTCCGGCTC 25
consensus_14190#2 ------------------------------------------------------------
consensus_14190#0 ATGGCACGACCACTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCAT 960
consensus_14190#3 ------------------------------------------------------------
consensus_14190#1 CGGCAAGAGAGCTAGTAGTGAGTAGTAGGAAGAAGAAGAGGCAAATTAATAGTAATGGAG 85
consensus_14190#2 ------------------------------------------------------------
consensus_14190#0 CTACCACGTGGTGGTGATCAGAGCAATCCCCTTCAAGAGCCGGGACTAATTAATTACCAT 1020
consensus_14190#3 ------------------------------------------------------------
consensus_14190#1 GGGAAGGAGGAGGATGTGAGGCTGGGGGCGAACAGGTACACGGAGAGGCAGCCGATCGGG 145
consensus_14190#2 ----------------------------------------------------------GG 2
consensus_14190#0 GCATCATCATCTTAATTAAGCGATAATTACT--CTGAAATAATCAACCGAGTTGATGCTG 1078
consensus_14190#3 GCATCATCATCTTAATTAAGCGATAATTACT--CTGAAATAATCCACCGAGTTGATGCTG 58
consensus_14190#1 ACGGCGGCGCAGGGGGCGGAGGAGAAGGACTACCGGGAGCCGCCGGCGGCGCCGGTGTT- 204
consensus_14190#2 ACGGCGGCGCAGGGGGCGGAGGAGAAGGACTACCGGGAGCCGCCGGCGGCGCCGGTGTT- 61
* * * ** ** *** * * * * * * * * ** *
consensus_14190#0 CAAGATGATGGAGGATCAAGTCTCTACAGTACTACGTGTGTTATTACCGTCTGGTGATCG 1138
consensus_14190#3 CAAGATGATGGAGGATCAAGTCTCTACAGTACTACGTGTGTTATTACCGTCTGGTGATCG 118
consensus_14190#1 CGAGGCGGAGGAGC-TGACGTCGTGGTCGTTCTAC-CGGGCGGGGATCGCGGAGTTCGTG 262
consensus_14190#2 CGAGGCGGAGGAGC-TGACGTCGTGGTCGTTCTAC-CGGGCGGGGATCGCGGAGTTCGTG 119
* ** * **** * * *** ** **** * * * ** ** *
consensus_14190#0 ATGAAGCTAGCCGCTGCATAATTATAAGCGCGTTTATATATATCTGATGTTGCTGTAATT 1198
consensus_14190#3 ATGAAGCTAGCCGCTGCATAATTATAAGCGCGTTTATATATATCTGATGTTGCTGTAATT 178
consensus_14190#1 GCGACGTT--CCTGTTCCTGTACATCAGCATCCTGACG-GTGATGGGGGTGAACAAGTCG 319
consensus_14190#2 GCGACGTT--CCTGTTCCTGTACATCAGCATCCTGACG-GTGATGGGGGTGAACAAGTCG 176
** * * ** * * * ** *** * * * * **
consensus_14190#0 ATATCTATGTGTACGTAGTATGTTTGGTGTGAGAAATGGTACTTGTGTGTGCGGAGGCAT 1258
consensus_14190#3 ATATCTATGTGTACGTAGTATGTTTGGTGTGAGAAATGGTACTTGTGTGTGCGGAGGCAT 238
consensus_14190#1 GCGTCCAAGTGCGC----CACCGTGGGGATCCAGGGCATCGCGTGGTCGTTCGGCGGCAT 375
consensus_14190#2 GCGTCCAAGTGCGC----CACCGTGGGGATCCAGGGCATCGCGTGGTCGTTCGGCGGCAT 232
** * *** * * * ** * * ** ** *** *****
consensus_14190#0 GCATGTTCTTGGTTGCACGCCTT-CAGCTA---TATATAGCTTTGCATCAATTCCATCTC 1314
consensus_14190#3 GCATGTTCTTGGTTGCACCCCTT-CAGCTAATATATATAGCTTTGCACC---TCCAAAAA 294
consensus_14190#1 G-ATCTTAGCGCTCGTCTACTGCACCGTCGGCATCTCCGGCGG-GCACATGAACCCGGTG 433
consensus_14190#2 G-ATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGGCGG-GCACATCAACCCGGCG 290
* ** ** * * * * * * * * ** *** **
consensus_14190#0 CAATGTGAATTTTACTAGTTACTATTTTTAAAAAAAAAAATCCCCTCTTATGTTATGTGT 1374
consensus_14190#3 AAAAA------------------------------------------------------- 299
consensus_14190#1 GTGACGTTCGGGCTGTTCCTGCCGCGGAAGCTGAGACTGACCTCTGGCGGTGA-CTACAT 492
consensus_14190#2 GTGACGTTCGGGCTGTTTCTGGCGCGGAAGCTGTCTTTG-TCGCGGTCGGTGATCTACAT 349
consensus_14190#0 GATCAAGTATTTGATCCCCTCTCGTTAAGTAAATGTTAAGCATGCGTATTTGTAAACTTG 1434
consensus_14190#3 ------------------------------------------------------------
consensus_14190#1 AGCAAAGCCATGCCTGGGCTCTCTCACCGTGCCCCCCTCAACT----------TGCCTGC 542
consensus_14190#2 GGCGATGCATTCTTCTGGGTTTTTAATGCTGTTCCTGTTAGCTGAAAGGGGATTAATTGT 409
consensus_14190#0 TTAGTGCTATACTGATATGCTATCGGCCCTATCGGCGCCATTATTGCCGGGTCTTCAAAT 1494
consensus_14190#3 ------------------------------------------------------------
consensus_14190#1 TACTCCTCTCTGTTCACCTTTTATTTGCCTCCTCTCATGATTGTACCTCCCTCGTCTT-- 600
consensus_14190#2 TCGTCTTTCTATTTTTCTCTCTCTTTCTCTCTTTTCTTTATTATGCTTTCTTTCTCTTCT 469
consensus_14190#0 GCCACGGTGTATGAAAAAACTTACGAATTGTGCAAAAA---------------------- 1532
consensus_14190#3 ------------------------------------------------------------
consensus_14190#1 ----TCTTT------TTGACTTTTATCCCC-TCCCAACTCTAAC-TCGTTCCCTCCCTCA 648
consensus_14190#2 GCTCTCTTTCGTCCCTTACTTTTTGTTTTTATTTCAATTCTCGTGTTGTTCTTTTCTTTT 529
consensus_14190#0 ------------------------------------------------------------
consensus_14190#3 ------------------------------------------------------------
consensus_14190#1 TTTTT-----ATTAATTCCGCTGTCGACATTTGTTTCACACGGTCTT----------TTA 693
consensus_14190#2 CTCCCCGACCACCTGCTTTAATTTTTAATTTTATTTCGCTTCATCTTGACGCCCCACTTT 589
consensus_14190#0 ------------------------------------------------------------
consensus_14190#3 ------------------------------------------------------------
consensus_14190#1 TCCTTTTACCTTTTTTGTATGTTCGTGTTCTCGCCCCACTGTACC--TATTCCCTCTCAC 751
consensus_14190#2 TAGTATTATCTCTCTTTTTTCCATTTGTTCTTAACTTTCTCTACTCTTATCCCTCCTATG 649
consensus_14190#0 ------------------------------------------------------------
consensus_14190#3 ------------------------------------------------------------
consensus_14190#1 CTCCTTCTCTTCTCTCTTGTTCTCGGCTTGTAGGTTCTGATGGTCGTT-CGTTGTGGTAT 810
consensus_14190#2 TTTTTTTTTTTCTCTCTCCTTTTTCTCTACCGAGTCTCTCTGTACATCACATCATTATTT 709
consensus_14190#0 ------------------------------------------------------------
consensus_14190#3 ------------------------------------------------------------
consensus_14190#1 GCTGC-CGGTTATGCGCTCGCAGTTGTGGTGTGTCATTTTATTTCTT----ACAATACAC 865
consensus_14190#2 TTTTCACTTTTTTTTTATTCTCTTTATTTTTTATTATTTTCTTTTTTTATTATTTTTTGT 769
consensus_14190#0 ------------------------------------------------
consensus_14190#3 ------------------------------------------------
consensus_14190#1 AATATTTTTATTTCTTTTTATT-AGTCTTCTTAGGAGACCGCTGTT-- 910
consensus_14190#2 TTCAATTTTCTATCTTTTTATTTAATCATCTTTATAATGTTTTCTTTA 817
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||