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Oryza sativa
cluster # 14199 cluster # 14199       Sequences # 15       consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14199#0 length = 1614 sequences # 12  
consensus_14199#1 length = 746 sequences # 1  
 consensus_14199#2 length = 396 sequences # 1  
consensus_14199#3 length = 300 sequences # 1  
consensusID : consensus_14199#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 1614
fasta sequence 
                              [GGCTCGTCTCATACAAACCCCGCCCGCATCCGCACCCGGATCTGCCACCGCCGCGGCTTCCCTCCCCCCCTCCTCCCGATCCACCCCTCCCGCCGCCGCCACCGCCACCGCCGCCGCCGCCGGCCGGCGAG-AGAGACAGGATGTACGGGTGGGAGATGCTCTC-GTTCAACATCCACGACGGCTTCCTGGAGGCCATCGTGCGGGGGAACCGG-TCGGGCCTCCTCACCGCCGCCGACTACAACAACCTCTGCCAGTGCGAGAACCTCGACGACGTCAAGATGCACCTCACCGCCACCGAGTACGGCCCCTACCTCCAGAACGAACCTTCACCCCTGCACACAACTACAATTGTGGAGAAGTGCACTCTTAAACTGGTTGATGAGTACAAACACATGATGTGCCAGGCGACTGAACCACTATCCACATTCTTACAGTATATAACGTATGGCCACATGA-TCGACAATGTTGTACTTATTGTTACCGGAACATTGCATGAGAGAGATGTTAATGAACTATTGGA-GAAATGCCATCCATT-GGGAATGTTTGACAGCATTGCATCT-CTT-GCAGTTGCTCAAAATATGCGCGAGCTTTACAGATTGG-TTTTGGTTGACACACCGTTAGCCCCATACTTCTCAGAATGCATTACATCTGAGGATTTGGATGACATGAATATCGAGATTATGAGGAACACTCTTTACAAAGCATACCTTGAGGACTTTTACAAATTCTGTGAAAAACTTGGTGGTGCAACTGCTGAGATTATGTGCGATCTTCTGTCATTTGAAGCAGACAGAAGAGCTGTGAACATTACAATAAACAGTATTGGTACAGAGTTGACTAGAGATGACCGTCGGAAGCTGTACTCCAACTTTGGTTTATTGTATCCATATGGTCATGAAGAACTGGCTGTTTGTGAAGATGTTGATCAGGTCCGTGGTGTAATGGAGAAGTACCCTCCATACCAGGCTATTTTTGCCAAAATTTCGTATGGGGAAAGCCAAATGTTGGATAAGGCCTTCTATGAGGAGGAAGTGCGGAGGCTGTGCTTGTCATTTGAACAGCAGTTCCACTATGCTGTTTTCTTTGCTTACATAAGGCTACGGGAGCAGGAGATTAGGAACTTGATGTGGATATCAGAGTGTGTTGCGCAGAATCAGAAGAACAGGGTCCACGACAGCGTTGTGTTCATCTTT-TGACCT-GCTCCTGCCACTCCACGGATGG-TTGTACAAAATGCCA-GGTTTGATGATGGCACAATCGGCTGCGATAATTATAAGCACATGACTTATTATGCCCCATTCATTTCTCTTTCTGCTCTGCTCGAAAGCAAGACCATGAGTGAATGTACTATTGTTTTACTTTTTGTAGTAAAATAAAGGCTTGATTATCTTGTGGTAAATTGAATAAATCCTGTCTATTTTGGGAGGCTGTAACTATCAATATCTAGTGAACATGGAACAG-TTTGTTGGCTTATTGCCAACATCCAAATTGCGCCCAACTCTGTTTTGGTGCATCAGGTTCTGTTCTAATTTTCTACTTATGTAACCTGACGGAGTATAAAGAGAGAATGTTTCTCTTTTTTGACAAAATNAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF326299             [GGCTCGTCTCATACAAACCCCGCCCGCATCCGCACCCGGATCTGCCACCGCCGCGGCTTCCCTCCCCCCCTCCTCCCGATCCACCCCTCCCGCCGCCGCCACCGCCACCGCCGCCGCCGCCGGCCGGCGAG AGATTC GAGTGCACGGGTGGGAGATGCTCTCTGTTCAACATCCACGACGGCTTCCTGGAGGCCATCGTGCGGGGGAACCGG TCGGGCCTCCTCACCGCCGCCGACTACAACAACCTCTGCCAGTGCGAGAACCTCGACGACGTCAAGATGCACCTCACCGCCACCGAGTACGGCCCCTACCTCCAGAACGAACCTTCACCCCTGCACACAACTACAATTGTGGAGAAGTGCCCTCTTAAACTGGTTGATGAGTACACACACATGATGTGCCAGGCGACTGAACCACTATCCACATTCTTACAGTATATAACGTATGGCCACATGA TCGACAATGTAGTACTTATTGTTACCGGAACATTGCATGAGAGAGATGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AK067605             [                                 ACCCGGATCTGCCACCGCCGCGGCTTCCCTCCCCCCCTCCTCCCGATCCACCCCTCCCGCCGCCGCCACCGCCACCGCCGCCGCCGCCGGCCGGCGAG AGAGACAGGATGTACGGGTGGGAGATGCTCTC GTTCAACATCCACGACGGCTTCCTGGAGGCCATCGTGCGGGGGAACCGG TCGGGCCTCCTCACCGCCGCCGACTACAACAACCTCTGCCAGTGCGAGAACCTCGACGACGTCAAGATGCACCTCACCGCCACCGAGTACGGCCCCTACCTCCAGAACGAACCTTCACCCCTGCACACAACTACAATTGTGGAGAAGTGCACTCTTAAACTGGTTGATGAGTACAAACACATGATGTGCCAGGCGACTGAACCACTATCCACATTCTTACAGTATATAACGTATGGCCACATGA TCGACAATGTTGTACTTATTGTTACCGGAACATTGCATGAGAGAGATGTTAATGAACTATTGGA GAAATGCCATCCATT GGGAATGTTTGACAGCATTGCATCT CTT GCAGTTGCTCAAAATATGCGCGAGCTTTACAGATTGG TTTTGGTTGACACACCGTTAGCCCCATACTTCTCAGAATGCATTACATCTGAGGATTTGGATGACATGAATATCGAGATTATGAGGAACACTCTTTACAAAGCATACCTTGAGGACTTTTACAAATTCTGTGAAAAACTTGGTGGTGCAACTGCTGAGATTATGTGCGATCTTCTGTCATTTGAAGCAGACAGAAGAGCTGTGAACATTACAATAAACAGTATTGGTACAGAGTTGACTAGAGATGACCGTCGGAAGCTGTACTCCAACTTTGGTTTATTGTATCCATATGGTCATGAAGAACTGGCTGTTTGTGAAGATGTTGATCAGGTCCGTGGTGTAATGGAGAAGTACCCTCCATACCAGGCTATTTTTGCCAAAATTTCGTATGGGGAAAGCCAAATGTTGGATAAGGCCTTCTATGAGGAGGAAGTGCGGAGGCTGTGCTTGTCATTTGAACAGCAGTTCCACTATGCTGTTTTCTTTGCTTACATAAGGCTACGGGAGCAGGAGATTAGGAACTTGATGTGGATATCAGAGTGTGTTGCGCAGAATCAGAAGAACAGGGTCCACGACAGCGTTGTGTTCATCTTT TGACCT GCTCCTGCCACTCCACGGATGG TTGTACAAAATGCCA GGTTTGATGATGGCACAATCGGCTGCGATAATTATAAGCACATGACTTATTATGCCCCATTCATTTCTCTTTCTGCTCTGCTCGAAAGCAAGACCATGAGTGAATGTACTATTGTTTTACTTTTTGTAGTAAAATAAAGGCTTGATTATCTTGTGGTAAATTGAATAAATCCTGTCTATTTTGGGAGGCTGTAACTATCAATATCTAGTGAACATGGAACAG TTTGTTGGCTTATTGCCAACATCCAAATTGCGCCCAACTCTGTTTTGGTGCATCAGGTTCTGTTCTAATTTTCTACTTATGTAACCTGACGGAGTATAAAGAGAGAATGTTT                                            ]
[+] EMBL OSS4630A             [                                                                                            agatCGCCGTCTTCCCCGCCGCCGCCGCCGGCCGG GAGNAGAGACAGGATGTACGGGTGGGAGATGCTCTC GTTCAACATCCACGACGGCTTCCTGGAGGCCATCGTGCGGGGGAACCGG TCGGGCCTCCTCACCGCCGCCGACTACAACAACCTCTGCCAGTNCGAGAACCTCGACGACGTCAAGATGCACCTCACCGCCACCGAGTACGGCCCCTACCTCCAGAACGAACCTTCACCCCTGCACACAACTACAATTGTGGAGAAGTGCACTCTTAAACTGGTTGATGAGTACAAACACATGATGTNCCAGGCGACTNAACCACTATCCACATTCTTACAGTATATAACGTATGGCCACATGATTCGNCAATGTTGTACTTATTGTTACCGGAACATTGCATGAGAGAGATGTTAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AU056785             [                                                                                                                                                                       TCAACATCCACGACGGCTTCCTNGAGGCCATCGTGCGGGGGAACCGGATCGGGCCTCCTCACCGCCGCCGACTACAACAACCTCTGCCAGTGCGAGAACCTCGACGACGTCAAGATGCACCTCACCGCCACCGAGTACGGCCCCTACCTCCAGAACGAACCTTCACCCCTGCACACAACTACAATTGTGGAGAAGTGCACTCTTAAACTGGTTGATGAGTACAAACACATGATGTGCCAGGCGACTGAACCACTATCCACATTCTTACAGTATATAACGTATGGCCACATGA TCGACAATGTTGTACTTATTGTTACCGGAACATTGCATGAGAGAGATGTTAATGAACTATTGGAGGAAATGCCATCCATT GGGAATGTTTGACAGCATTGCATCT CTTGGCAGTTGCTCAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CF324171             [                                                                                                                                                                                                             GGGAACCGG TCGGGCCTCCTCACCGCCGCCGACTACAACAACCTCTGCCAGTGCGAGAACCTCGACGACGTCAAGATGCACCTCACCGCCACCGAGTACGGCCCCTACCTCCAGAACGAACCTTCACCCCTGCACACAACTACAATTGTGGAGAAGTGCACTCTTAAACTGGTTGATGAGTACAAACACATGATGTGCCAGGCGACTGAACCACTATCCACATTCTTACAGTATATAACGTATGGCCACATGA TCGACAATGTTGTACTTATTGTTACCGGAACATTGCATGAGAGAGATGTTAATGAACTATTGGA GAAATGCCATCCATT GGGAATGTTTGACAGCATTGCATCT CTT GCAGTTGCTCAAAATATGCGCGAGCTTTACAGATTGG TTTTGGTTGACACACCGTTAGCCCCATACTTCTCAGAATGCATTACATCTGAGGATTTGGATGACATGAATATCGAGATTATGAGGAACACTCTTTACAAAGCATACCTTGAGGACTTTTACAAATTCTGTG AAAACTTGGTGGTGCAACTGCTGAGATTATGTGCGATCTTCTGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL C71885               [                                                                                                                                                                                                                          GGCCTCCTCACCGCCGCCGACTACAACAACCTCTGCCAGTNCGAGAACCTCGACGACGTCAAGATGCACCTCACCGCCACCGAGTACGGCCCCTACCTCCAGAACGAACCTTCACCCCTGCACACAACTACAATTNTGGAGAAGTGCACTCTTAAACTGGTTGATGAGTACAAACACATGATGTGCCAGGCGACTGAACCACTATCCACATTCTTACAGTATATAACGTATGGCCACATGA TCGACAATGTTGTACTTATTGTTACCGGAACATTGCATGAGAGAGATGTTAATGAACTATTGGA GAAATGCCATCCATTGGGGAATGTTTGACAGCATTGCATCTNTTT GCAGTTGCTCAAAATATGCGCGGTTTTTACAGATTGGNTTTTGGTTGACACACCGTTAGCCCCATAATTTTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CA999152             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AACACTCTTTACAAAGCATACCTTGAGGACTTTTACAAATTCTGTGAAAAACTTGGTGGTGCAACTGCTGAGATTATGTGCGATCTTCTGTCATTTGAAGCAGACAGAAGAGCTGTGAACATTACAATAAACAGTATTGGTACAGAGTTGACTAGAGATGACCGTCGGAAGCTGTACTCCAACTTTGGTTTATTGTATCCATATGGTCATGAAGAACTGGCTGTTTGTGAAGATGTTGATCAGGTCCGTGGTGTAATGGAGAAGTACCCTCCATACCAGGCTATTTTTGCCAAAATTTCGTATGGGGAAAGCCAAATGTTGGATAAGGCCTTCTATGAGGAGGAAGTGCGGAGGCTGTGCTTGTCATTTGAACAGCAGTTCCACTATGCTGTTTTCTTTGCTTACATAAGGCTACGGGAGCAGGAGATTAGGAACTTGATGTGGATATCAGAGTGTGTTGCGCAGAATCAGAAGAACAGGGTCCACGACAGCGTTGTGTTCATCTTT TGACCT GCTCCTGCCACTCCACGGATGG TTGTACAAAATGCCC AGTTTGATGATGGCACAATCGGCTGCGATAATTATAAGCACATGATTTATTATGCCCCATTCATTTCTCTTTCTGCTC                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CB663451             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AGCTGTGAACATTACAATAAACAGTATTGGTACAGAGTTGACTAGAGATGACCGTCGGAAGCTGTACTCCAACTTTGGTTTATTGTATCCATATGGTCATGAAGAACTGGCTGTTTGTGAAGATGTTGATCAGGTCCGTGGTGTAATGGAGAAGTACCCTCCATACCAGGCTATTTTTGCCAAAATTTCGTATGGGGAAAGCCAAATGTTGGATAAGGCCTTCTATGAGGAGGAAGTGCGGAGGCTGTGCTTGTCATTTGAACAGCAGTTCCACTATGCTGTTTTCTTTGCTTACATAAGGCTACGGGAGCAGGAGATTAGGAACTTGATGTGGATATCAGAGTGTGTTGCGCAGAATCAGAAGAACAGGGTCCACGACAGCGTTGTGTTCATCTTT TGACCT GCTCCTGCCACTCCACGGATGG TTGTACAAAATGCCA GGTTTGATGATGGCACAATCGGCTGCGATAATTATAAGCACATGACTTATTATGCCCCATTCATTTCTCTTTCTGCTCTGCTCGAAAGCAAGACCATGAGTGAATGTACTATTGTTTTACTTTTTGTAGTAAAATAAAGGCTTGATTATCTTGTGGTAAATTGAATAAATCCTGTCTATTTTGGGAGGCTGTAACTATCAATATCTAGTGAACATGGAACAG TTTGTTGGCTTATTGCCAACATCCAAATTGCGCCCAACTCTGTTTTGGTGCATCAGGTTCTGTTCTAATTTTCTACTTATGTAACCTGACGGAGTATAAAGAGAGAATGTTTCTC                                         ]
[+] EMBL CF309784             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TGCTTGT ATTTGAACAGCAGTTCC CTATGCTGTTTTCTTTGCTTACATAAGGCTACGGGAGCAGGAGATTAGGAACTTGATGTGGATATCAGAGTGTGTTGCGCAGAATCAGAAGAACAGGGTCCACGACAGCGTTGTGTTCATCTTT TGACCT GCTCCTGCCACTCCACGGATGG TTGTACAAAATGCCA GGTTTGATGATGGCACAATCGGCTGCGATAATTATAAGCACATGACTTATTATGCCCCATTCATTTCTCTTTCTGCTCTGCTCGAAAGCAAGACCATGAGTGAATGTACTATTGTTTTACTTTTTGTAGTAAAATAAAGGCTTGATTATCTTGTGGTAAATTGAATAAATCCTGTCTATTTTGGGAGGCTGTAACTATCAATATCTAGTGAACATGGAACAGTTTTGTTGGCTTATTGCCAACATCCAAATTGCGCCCAACTCTGTTTTGGTGCATCAGGTTCTGTTCTAATTTTCTACTTATGTAACCTGACGGAGTATAAAGAGAGAATGTTTCTCTTTTTTGACA                               ]
[+] EMBL BI806170             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ATAAGGCTACGGGA CAGGAGATTAGGAACTTGATGTGGATATCAGAGTGTGTTGCCAAGAATCAGAAGAACAGGGTCCACGACAGC TTGTGTTCATCTTTGTGACCTNGCTCCTGCCACTCCACGGATGGTTTGTACCAAATGCCACGGTTTGATGATGGCACAATCGGCTGCGATAATTATAAGCACATGACTTATTATGCCCCATTCATTTCTCTTTCTGCTCTGCTCGAAAGCAAGACCATGAGTGAATGTATTATTGTTTTACTTTTTGTAGTAAAATAAAGGCTTGATTATCTTGTGGTAAATTGAATAAATCCTGTCTATTTTGGGAGGCTGTAACTATCAATATCTAGTGAACATGGAACAG TTTGTTGGCTTATNGCC ACATCC AATTGCGCCC ACTCTGTTTTGGTGCATCAGGTTCTGTTCTAATTTTCTACTTATGTAACCTGACGGAGTATAAAGAGAGAATGTTTCTCTTTTTTGACnttt                            ]
[+] EMBL AU056786             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AGAAGAACAGGGTCCACGACAGCGTTGTGTTCATCTTT TGACCT GCTCCTGCCACTCCACGGATGG TTGTACAAAATGCCA GGTTTGATGATGGCACAATCGGCTGCGATAATTATAAGCACATGACTTATTATGCCCCATTCATTTCTCTTTCTGCTCTGCTCGAAAGCAAGNCCATGAGTGAATGTACTATTGTTTTACTTTTTGTAGTAAAATAAAGGCTTGATTATCTTGTGGTAAATTGAATAAATCCTGTCTATTTTGGGAGGCTGTAACTATCAATATCTAGTGAACATGGAACAG TTTGTTGGCTTATTGCCAACATCCAAATTGCGCCCAACTCTGTTTTGGTGCATCAGGTTCTGTTCTAATTTTCTACTTATGTAACNTGACGNAGTATAAAGAGAGAATGTTTCTNTTTTTTGACAAAATNAAAA                      ]
[+] EMBL AU093792             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TGCTCGAAAGCAAGNCCATGAGTGANTGTACTATTGTTTTACTTTTTGTAGTNAAATNAAGGCTTGATTATCTTGTGGTNAATTGAATAAATCCTGTCTATTTTGGGAGGCTNTAACTATCANTATNTNGTGAACATGGAACAG TTTGTTGGCTTATTGCCAACATCCAAATTGCGCCCAACTCTGTTTTGGTGCATCAGGTTCTGTTCTAATTTTCTACTTATGTAA CTGACGGAGTATAAAGAGAGAATGTTTCTCTTTTTTGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_14199#0
GGCTCGTCTCATACAAACCCCGCCCGCATCCGCACCCGGATCTGCCACCGCCGCGGCTTC
CCTCCCCCCCTCCTCCCGATCCACCCCTCCCGCCGCCGCCACCGCCACCGCCGCCGCCGC
CGGCCGGCGAGAGAGACAGGATGTACGGGTGGGAGATGCTCTCGTTCAACATCCACGACG
GCTTCCTGGAGGCCATCGTGCGGGGGAACCGGTCGGGCCTCCTCACCGCCGCCGACTACA
ACAACCTCTGCCAGTGCGAGAACCTCGACGACGTCAAGATGCACCTCACCGCCACCGAGT
ACGGCCCCTACCTCCAGAACGAACCTTCACCCCTGCACACAACTACAATTGTGGAGAAGT
GCACTCTTAAACTGGTTGATGAGTACAAACACATGATGTGCCAGGCGACTGAACCACTAT
CCACATTCTTACAGTATATAACGTATGGCCACATGATCGACAATGTTGTACTTATTGTTA
CCGGAACATTGCATGAGAGAGATGTTAATGAACTATTGGAGAAATGCCATCCATTGGGAA
TGTTTGACAGCATTGCATCTCTTGCAGTTGCTCAAAATATGCGCGAGCTTTACAGATTGG
TTTTGGTTGACACACCGTTAGCCCCATACTTCTCAGAATGCATTACATCTGAGGATTTGG
ATGACATGAATATCGAGATTATGAGGAACACTCTTTACAAAGCATACCTTGAGGACTTTT
ACAAATTCTGTGAAAAACTTGGTGGTGCAACTGCTGAGATTATGTGCGATCTTCTGTCAT
TTGAAGCAGACAGAAGAGCTGTGAACATTACAATAAACAGTATTGGTACAGAGTTGACTA
GAGATGACCGTCGGAAGCTGTACTCCAACTTTGGTTTATTGTATCCATATGGTCATGAAG
AACTGGCTGTTTGTGAAGATGTTGATCAGGTCCGTGGTGTAATGGAGAAGTACCCTCCAT
ACCAGGCTATTTTTGCCAAAATTTCGTATGGGGAAAGCCAAATGTTGGATAAGGCCTTCT
ATGAGGAGGAAGTGCGGAGGCTGTGCTTGTCATTTGAACAGCAGTTCCACTATGCTGTTT
TCTTTGCTTACATAAGGCTACGGGAGCAGGAGATTAGGAACTTGATGTGGATATCAGAGT
GTGTTGCGCAGAATCAGAAGAACAGGGTCCACGACAGCGTTGTGTTCATCTTTTGACCTG
CTCCTGCCACTCCACGGATGGTTGTACAAAATGCCAGGTTTGATGATGGCACAATCGGCT
GCGATAATTATAAGCACATGACTTATTATGCCCCATTCATTTCTCTTTCTGCTCTGCTCG
AAAGCAAGACCATGAGTGAATGTACTATTGTTTTACTTTTTGTAGTAAAATAAAGGCTTG
ATTATCTTGTGGTAAATTGAATAAATCCTGTCTATTTTGGGAGGCTGTAACTATCAATAT
CTAGTGAACATGGAACAGTTTGTTGGCTTATTGCCAACATCCAAATTGCGCCCAACTCTG
TTTTGGTGCATCAGGTTCTGTTCTAATTTTCTACTTATGTAACCTGACGGAGTATAAAGA
GAGAATGTTTCTCTTTTTTGACAAAATNAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_14199#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 746
fasta sequence 
                              [CCCCTCCCGCCGCCGCCACCGCCACCGCCGCCGCCGCCGGCCGGCGAGAGAGACAGGATGTACGGGTGGGAGATGCTCTCGTTCAACATCCACGACGGCTTCCTGGAGGCCATCGTGCGGGGGAACCGGTCGGGCCTCCTCACCGCCGCCGACTACAACAACCTCTGCCAGTGCGAGAACCTCGACGACGTCAAGATGCACCTCACCGCCACCGAGTACGGCCCCTACCTCCAGAACGAACCTTCACCCCTGCACACAACTACAATTGTGGAGAAGTGCACTCTTAAACTGGTTGATGAGTACAAACACATGATGTGCCAGGCGACTGAACCACTATCCACATTCTTACAGTATATAACGTATGGCCACATGATCGACAATGTTGTACTTATTGTTACCGGAACATTGCGTGAGAGAGATGTTAATGAACTATTGGAGAAATGCCATCCATTGGGAATGTTTGACAGCATTGCATCTCTTGCAGTTGCTCAAAATATGCGCGAGCTTTACAGATTGGTTTTGGTTGACACACCGTTAGCCCCATACTTCTCAGAATGCATTACATCTGAGGATTTGGATGACATGAATATCGAGATTATGAGGAACACTCTTTACAAAGCATACCTTGAGGACTTTTACAAATTCTGTGAAAAACTTGGTGGTGCAACTGCTGAGATTATGTGCGATCTTCTGTCATTTGAAGCAGACAGAAGAGCTGTGAACATTACAATAAACACAGTTGACTA]

[+] EMBL CB618787             [CCCCTCCCGCCGCCGCCACCGCCACCGCCGCCGCCGCCGGCCGGCGAGAGAGACAGGATGTACGGGTGGGAGATGCTCTCGTTCAACATCCACGACGGCTTCCTGGAGGCCATCGTGCGGGGGAACCGGTCGGGCCTCCTCACCGCCGCCGACTACAACAACCTCTGCCAGTGCGAGAACCTCGACGACGTCAAGATGCACCTCACCGCCACCGAGTACGGCCCCTACCTCCAGAACGAACCTTCACCCCTGCACACAACTACAATTGTGGAGAAGTGCACTCTTAAACTGGTTGATGAGTACAAACACATGATGTGCCAGGCGACTGAACCACTATCCACATTCTTACAGTATATAACGTATGGCCACATGATCGACAATGTTGTACTTATTGTTACCGGAACATTGCGTGAGAGAGATGTTAATGAACTATTGGAGAAATGCCATCCATTGGGAATGTTTGACAGCATTGCATCTCTTGCAGTTGCTCAAAATATGCGCGAGCTTTACAGATTGGTTTTGGTTGACACACCGTTAGCCCCATACTTCTCAGAATGCATTACATCTGAGGATTTGGATGACATGAATATCGAGATTATGAGGAACACTCTTTACAAAGCATACCTTGAGGACTTTTACAAATTCTGTGAAAAACTTGGTGGTGCAACTGCTGAGATTATGTGCGATCTTCTGTCATTTGAAGCAGACAGAAGAGCTGTGAACATTACAATAAACACAGTTGACTA]




>consensus_14199#1
CCCCTCCCGCCGCCGCCACCGCCACCGCCGCCGCCGCCGGCCGGCGAGAGAGACAGGATG
TACGGGTGGGAGATGCTCTCGTTCAACATCCACGACGGCTTCCTGGAGGCCATCGTGCGG
GGGAACCGGTCGGGCCTCCTCACCGCCGCCGACTACAACAACCTCTGCCAGTGCGAGAAC
CTCGACGACGTCAAGATGCACCTCACCGCCACCGAGTACGGCCCCTACCTCCAGAACGAA
CCTTCACCCCTGCACACAACTACAATTGTGGAGAAGTGCACTCTTAAACTGGTTGATGAG
TACAAACACATGATGTGCCAGGCGACTGAACCACTATCCACATTCTTACAGTATATAACG
TATGGCCACATGATCGACAATGTTGTACTTATTGTTACCGGAACATTGCGTGAGAGAGAT
GTTAATGAACTATTGGAGAAATGCCATCCATTGGGAATGTTTGACAGCATTGCATCTCTT
GCAGTTGCTCAAAATATGCGCGAGCTTTACAGATTGGTTTTGGTTGACACACCGTTAGCC
CCATACTTCTCAGAATGCATTACATCTGAGGATTTGGATGACATGAATATCGAGATTATG
AGGAACACTCTTTACAAAGCATACCTTGAGGACTTTTACAAATTCTGTGAAAAACTTGGT
GGTGCAACTGCTGAGATTATGTGCGATCTTCTGTCATTTGAAGCAGACAGAAGAGCTGTG
AACATTACAATAAACACAGTTGACTA

consensusID : consensus_14199#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 396
fasta sequence 
                              [CCGAGGCTCTTGCTTGTCATTGAACAGCAGTTCCACTATGGCTGTTTTCTTTTGCTTTACATAAGGCTACGGGAGCAGGAGATTAGGAACTTGATGTGGATATCAGAGTGTGTTGCGCAGAATCAGAAGAACAGGGTCCACGACAGCGTTGTGTTCATCTTTTGACCTGCTCCTGCCACTCCACGGATGGTTGTACAAAATGCCAGGTTTGATGATGGCACAATCGGCTGCGATAATTATAAGCACATGACTTATTATGCCCCATTCATTTCTCTTTCTGCTCTGCTCGAAAGCAAGACCATGAGTGAATGTACTATTGTTTTACTTTTTGTAGTAAAATAAAGGCTTGATTATCTTGTGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU097399             [CCGAGGCTCTTGCTTGTCATTGAACAGCAGTTCCACTATGGCTGTTTTCTTTTGCTTTACATAAGGCTACGGGAGCAGGAGATTAGGAACTTGATGTGGATATCAGAGTGTGTTGCGCAGAATCAGAAGAACAGGGTCCACGACAGCGTTGTGTTCATCTTTTGACCTGCTCCTGCCACTCCACGGATGGTTGTACAAAATGCCAGGTTTGATGATGGCACAATCGGCTGCGATAATTATAAGCACATGACTTATTATGCCCCATTCATTTCTCTTTCTGCTCTGCTCGAAAGCAAGACCATGAGTGAATGTACTATTGTTTTACTTTTTGTAGTAAAATAAAGGCTTGATTATCTTGTGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_14199#2
CCGAGGCTCTTGCTTGTCATTGAACAGCAGTTCCACTATGGCTGTTTTCTTTTGCTTTAC
ATAAGGCTACGGGAGCAGGAGATTAGGAACTTGATGTGGATATCAGAGTGTGTTGCGCAG
AATCAGAAGAACAGGGTCCACGACAGCGTTGTGTTCATCTTTTGACCTGCTCCTGCCACT
CCACGGATGGTTGTACAAAATGCCAGGTTTGATGATGGCACAATCGGCTGCGATAATTAT
AAGCACATGACTTATTATGCCCCATTCATTTCTCTTTCTGCTCTGCTCGAAAGCAAGACC
ATGAGTGAATGTACTATTGTTTTACTTTTTGTAGTAAAATAAAGGCTTGATTATCTTGTG
GTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_14199#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 300
fasta sequence 
                              [GCAGAATCAGAAGAACAGGGTCCACGACAGCGTTGTGTTCATCTTTTGACCTGCTCCTGCCACTCCACGGATGGTTGTACAAAATGCCAGGTTTGATGATGGCACAATCGGCTGCGATAATTATAAGCACATGACTTATTATGCCCCATTCATTTCTCTTTCTGCTCTGCTCGAAAGCAAGACCATGAGTGAATGTACTATTGTTTTACTTTTTGTAGTAAAATAAAGGCTTGATTATCTTGTGGTAAATTGAATAAATCCTGTCTATTTTGGGAGGCTGTAAAAAAAAAAAAAAAAANA]

[+] EMBL AU161798             [GCAGAATCAGAAGAACAGGGTCCACGACAGCGTTGTGTTCATCTTTTGACCTGCTCCTGCCACTCCACGGATGGTTGTACAAAATGCCAGGTTTGATGATGGCACAATCGGCTGCGATAATTATAAGCACATGACTTATTATGCCCCATTCATTTCTCTTTCTGCTCTGCTCGAAAGCAAGACCATGAGTGAATGTACTATTGTTTTACTTTTTGTAGTAAAATAAAGGCTTGATTATCTTGTGGTAAATTGAATAAATCCTGTCTATTTTGGGAGGCTGTAAAAAAAAAAAAAAAAANA]




>consensus_14199#3
GCAGAATCAGAAGAACAGGGTCCACGACAGCGTTGTGTTCATCTTTTGACCTGCTCCTGC
CACTCCACGGATGGTTGTACAAAATGCCAGGTTTGATGATGGCACAATCGGCTGCGATAA
TTATAAGCACATGACTTATTATGCCCCATTCATTTCTCTTTCTGCTCTGCTCGAAAGCAA
GACCATGAGTGAATGTACTATTGTTTTACTTTTTGTAGTAAAATAAAGGCTTGATTATCT
TGTGGTAAATTGAATAAATCCTGTCTATTTTGGGAGGCTGTAAAAAAAAAAAAAAAAANA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14199#2      ------------------------------------------------------------
consensus_14199#3      ------------------------------------------------------------
consensus_14199#0      GGCTCGTCTCATACAAACCCCGCCCGCATCCGCACCCGGATCTGCCACCGCCGCGGCTTC 60
consensus_14199#1      ------------------------------------------------------------
                                                                                   

consensus_14199#2      ------------------------------------------------------------
consensus_14199#3      ------------------------------------------------------------
consensus_14199#0      CCTCCCCCCCTCCTCCCGATCCACCCCTCCCGCCGCCGCCACCGCCACCGCCGCCGCCGC 120
consensus_14199#1      ------------------------------------------------------------
                                                                                   

consensus_14199#2      ------------------------------------------------------------
consensus_14199#3      ------------------------------------------------------------
consensus_14199#0      CGGCCGGCGAGAGAGACAGGATGTACGGGTGGGAGATGCTCTCGTTCAACATCCACGACG 180
consensus_14199#1      ------------------------------------------------------------
                                                                                   

consensus_14199#2      ------------------------------------------------------------
consensus_14199#3      ------------------------------------------------------------
consensus_14199#0      GCTTCCTGGAGGCCATCGTGCGGGGGAACCGGTCGGGCCTCCTCACCGCCGCCGACTACA 240
consensus_14199#1      ------------------------------------------------------------
                                                                                   

consensus_14199#2      ------------------------------------------------------------
consensus_14199#3      ------------------------------------------------------------
consensus_14199#0      ACAACCTCTGCCAGTGCGAGAACCTCGACGACGTCAAGATGCACCTCACCGCCACCGAGT 300
consensus_14199#1      ------------------------------------------------------------
                                                                                   

consensus_14199#2      ------------------------------------------------------------
consensus_14199#3      ------------------------------------------------------------
consensus_14199#0      ACGGCCCCTACCTCCAGAACGAACCTTCACCCCTGCACACAACTACAATTGTGGAGAAGT 360
consensus_14199#1      ------------------------------------------------------------
                                                                                   

consensus_14199#2      ------------------------------------------------------------
consensus_14199#3      ------------------------------------------------------------
consensus_14199#0      GCACTCTTAAACTGGTTGATGAGTACAAACACATGATGTGCCAGGCGACTGAACCACTAT 420
consensus_14199#1      ------------------------------------------------------------
                                                                                   

consensus_14199#2      ------------------------------------------------------------
consensus_14199#3      ------------------------------------------------------------
consensus_14199#0      CCACATTCTTACAGTATATAACGTATGGCCACATGATCGACAATGTTGTACTTATTGTTA 480
consensus_14199#1      ------------------------------------------------------------
                                                                                   

consensus_14199#2      ------------------------------------------------------------
consensus_14199#3      ------------------------------------------------------------
consensus_14199#0      CCGGAACATTGCATGAGAGAGATGTTAATGAACTATTGGAGAAATGCCATCCATTGGGAA 540
consensus_14199#1      ------------------------------------------------------------
                                                                                   

consensus_14199#2      ------------------------------------------------------------
consensus_14199#3      ------------------------------------------------------------
consensus_14199#0      TGTTTGACAGCATTGCATCTCTTGCAGTTGCTCAAAATATGCGCGAGCTTTACAGATTGG 600
consensus_14199#1      ------------------------------------------------------------
                                                                                   

consensus_14199#2      ------------------------------------------------------------
consensus_14199#3      ------------------------------------------------------------
consensus_14199#0      TTTTGGTTGACACACCGTTAGCCCCATACTTCTCAGAATGCATTACATCTGAGGATTTGG 660
consensus_14199#1      ------------------------------------------------------------
                                                                                   

consensus_14199#2      ------------------------------------------------------------
consensus_14199#3      ------------------------------------------------------------
consensus_14199#0      ATGACATGAATATCGAGATTATGAGGAACACTCTTTACAAAGCATACCTTGAGGACTTTT 720
consensus_14199#1      ------------------------------------------------------------
                                                                                   

consensus_14199#2      ------------------------------------------------------------
consensus_14199#3      ------------------------------------------------------------
consensus_14199#0      ACAAATTCTGTGAAAAACTTGGTGGTGCAACTGCTGAGATTATGTGCGATCTTCTGTCAT 780
consensus_14199#1      -----------------CCCCTCCCGCCGCCGCCACCGCCACCGCCGCCGCCGCCGGCCG 43
                                                                                   

consensus_14199#2      ------------------------------------------------------------
consensus_14199#3      ------------------------------------------------------------
consensus_14199#0      TTGAAGCAGACAGAAGAGCTGTGAACATTACAATAAACAGTATTGGTACAGAGTTGACTA 840
consensus_14199#1      GCGAGAGAGACAGGATGTACGGGTGGGAGATGCTCTCGTTCAACATCCACGACGGCTTCC 103
                                                                                   

consensus_14199#2      ------------------------------------------------------------
consensus_14199#3      ------------------------------------------------------------
consensus_14199#0      GAGATGACCGTCGGAAGCTGTACTCCAACTTTGGTTTATTGTATCCATATGGTCATGAAG 900
consensus_14199#1      TGGAGGCCATCGTGCGGGGGAACCGGTCGGGCCTCCTCACCGCCGCCGACTACAACAACC 163
                                                                                   

consensus_14199#2      ------------------------------------------------------------
consensus_14199#3      ------------------------------------------------------------
consensus_14199#0      AACTGGCTGTTTGTGAAGATGTTGATCAGGTCCGTGGTGTAATGGAGAAGTACCCTCCAT 960
consensus_14199#1      TCTGCCAGTGCGAGAACCTCGACGACGTCAAGATGCACCTCACCGCCACCGAGTACGGCC 223
                                                                                   

consensus_14199#2      ------------------------------------------------------------
consensus_14199#3      ------------------------------------------------------------
consensus_14199#0      ACCAGGCTATTTTTGCCAAAATTTCGTATGGGGAAAGCCAAATGTTGGATAAGGCCTTCT 1020
consensus_14199#1      CCTACCTCCAGAACGAACCTTCACCCCTGCACACAACTACAATTGTGGAGAAGTGCACTC 283
                                                                                   

consensus_14199#2      -------------CCGAGGCTCTTGCTTGTCATT--GAACAGCAGTTCCACTATGG-CTG 44
consensus_14199#3      ------------------------------------------------------------
consensus_14199#0      ATGAGGAGGAAGTGCGGAGGCTGTGCTTGTCATTT-GAACAGCAGTTCCACTATG--CTG 1077
consensus_14199#1      TTAAACTGGTTGATGAGTACAAACACATGATGTGCCAGGCGACTGAACCACTATCCACAT 343
                                                                                   

consensus_14199#2      TTTTCTTTTGCTTTACATAAGGCTACGGGAGCAGGAGATTAGGAACTTGATGTGGATATC 104
consensus_14199#3      ------------------------------------------------------------
consensus_14199#0      TTTTCTTTG--CTTACATAAGGCTACGGGAGCAGGAGATTAGGAACTTGATGTGGATATC 1135
consensus_14199#1      TCTTACAGTATATAACGTATGGCCACATGATC-GACAATGTTGTACTTATTGTTACCGGA 402
                                                                                   

consensus_14199#2      AGAGTGTGTTGCGCAGAATCAGAAGAACAGGGTCCACGACAGCGTT-GTGTTCATCTTTT 163
consensus_14199#3      ------------GCAGAATCAGAAGAACAGGGTCCACGACAGCGTT-GTGTTCATCTTTT 47
consensus_14199#0      AGAGTGTGTTGCGCAGAATCAGAAGAACAGGGTCCACGACAGCGTT-GTGTTCATCTTTT 1194
consensus_14199#1      ACATTGCGTGAGAGAGATGTTAATGAACTATTGGAGAAATGCCATCCATTGGGAATGTTT 462
                                     ***     * ****          *   * *   *    *   ***

consensus_14199#2      GACCTGCTCCTGCCACTCCACGGATGGTTGTACAAAATGCCAGGTTTGATGATGGCACAA 223
consensus_14199#3      GACCTGCTCCTGCCACTCCACGGATGGTTGTACAAAATGCCAGGTTTGATGATGGCACAA 107
consensus_14199#0      GACCTGCTCCTGCCACTCCACGGATGGTTGTACAAAATGCCAGGTTTGATGATGGCACAA 1254
consensus_14199#1      GACAGCATTGCATCTCTT-GCAGTTGCTCAAAATATGCGCGAGCTTTACAGATTGGTT-- 519
                       ***    *     * **   * * ** *   *  *   ** ** ***   *** *     

consensus_14199#2      TCGGCTGCGATAATTATAAGCACATGACTTATTATGCCCCATT-CATTTCTCTTTCTGCT 282
consensus_14199#3      TCGGCTGCGATAATTATAAGCACATGACTTATTATGCCCCATT-CATTTCTCTTTCTGCT 166
consensus_14199#0      TCGGCTGCGATAATTATAAGCACATGACTTATTATGCCCCATT-CATTTCTCTTTCTGCT 1313
consensus_14199#1      TTGGTTGACACACCGTTAGCCCCAT-ACTTCTCAGAATGCATTACATCTGAGGATTTGGA 578
                       * ** **  * *    **  * *** **** * *     **** *** *     * **  

consensus_14199#2      CTGCTCGAA-AGCAAGACCATGAGTGAATGTACTATT---GTTTTACTTTTTGTAGTAAA 338
consensus_14199#3      CTGCTCGAA-AGCAAGACCATGAGTGAATGTACTATT---GTTTTACTTTTTGTAGTAAA 222
consensus_14199#0      CTGCTCGAA-AGCAAGACCATGAGTGAATGTACTATT---GTTTTACTTTTTGTAGTAAA 1369
consensus_14199#1      TGACATGAATATCGAGATTATGAG-GAACACTCTTTACAAAGCATACCTTGAGGACTTTT 637
                          *  *** * * ***  ***** ***    ** *        *** **  * * *   

consensus_14199#2      ATAAAGGCT-TGATTATCTTG-TGGTA-AAAAAAAAAAAA-------------------- 375
consensus_14199#3      ATAAAGGCT-TGATTATCTTG-TGGTA-AATTGAATAAATCCTGTCTATTTTGGGAGGCT 279
consensus_14199#0      ATAAAGGCT-TGATTATCTTG-TGGTA-AATTGAATAAATCCTGTCTATTTTGGGAGGCT 1426
consensus_14199#1      ACAAATTCTGTGAAAAACTTGGTGGTGCAACTGCTGAGATTATGTGCGATCTTCTGTCAT 697
                       * ***  ** ***  * **** ****  **      * *                     

consensus_14199#2      AAAAAAAAAAAAAAAAAAAAA--------------------------------------- 396
consensus_14199#3      GTAAAAAAAAAAAAAAAAANA--------------------------------------- 300
consensus_14199#0      GTAACTATCAATATCTAGTGAACATGGAACAGTTTGTTGGCTTATTGCCAACATCCAAAT 1486
consensus_14199#1      TTGAAGCAGACAGAAGAGCTGTGAACATTACAATAAACACAGTTGACTA----------- 746
                          *     *      *                                           

consensus_14199#2      ------------------------------------------------------------
consensus_14199#3      ------------------------------------------------------------
consensus_14199#0      TGCGCCCAACTCTGTTTTGGTGCATCAGGTTCTGTTCTAATTTTCTACTTATGTAACCTG 1546
consensus_14199#1      ------------------------------------------------------------
                                                                                   

consensus_14199#2      ------------------------------------------------------------
consensus_14199#3      ------------------------------------------------------------
consensus_14199#0      ACGGAGTATAAAGAGAGAATGTTTCTCTTTTTTGACAAAATNAAAAAAAAAAAAAAAAAA 1606
consensus_14199#1      ------------------------------------------------------------
                                                                                   

consensus_14199#2      --------
consensus_14199#3      --------
consensus_14199#0      AAAAAAAA 1614
consensus_14199#1      --------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)