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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14203#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 915 fasta sequence
[GCACCAGCGCCGGCGGCGATGGTGGCGGCGGCGGAGTTCGGGCTGACCGCGGAGGTGATGGCGGTGCTGCCGGAGGACCCG-TTCGAGCAGCTGGACGTGGCGCGGAAGATCACCTCCATCGCGCTGGCGTCGCGCCTCGGGCGGCTCGAGGCCGAGGGCGCGCGGCTCCGCGCGCAGCTCGCCGAGCGCGACGCCGCGGCGGAGGACCTCAGCGAGCGCGTCGAGCAGCTCGACGCCGCGCTCGCGGTGGCCACCGGACGCCTCCGCCGCGCCGAGGAGGAGAAGGAGGCACTGCAGAGGGATAACTCATTGCTGTCAAACACCGTCAGGAGGCTGAACAGAGATGTTGCCAAGTTGGAAGTGTTCAAGAAGACGCTTATGCAGTCACTCCAGGAAGATGAAGATCCTGCTAACACTACTCCTAAGGCAAGGGTCAGCGAAACTTCAAATTTCTCCTCTGCAACATCTGTTGGAGATGAAGATTCTGCATTTCCAGTTTCCAAATCGTCACAATTATCAGAAACCGCAAGTTCAGTCTCAGAGGAAAGTAGTCATGTTGAGCCAGATGTACCCAGGCCACCCCGTCCACATGTATTTTTGCCATCGTACAACAGTACACCAAGGGTTACTCCCCCAGACTCACCT-CCAAGGAGTTTCGCGTCAATATCACCT-CCAAGGCGGCATTCAATTTCAATTACATCAAGGAATTTGTTTGATGACAGGTCCTCGGCCTATTCTGGTCATAGTTCAGTGACATCTCCATTTGATGCAGGAAGTCACACAGGACGAACACGAGTTGATGGAAAAGAGTTCTTCCGTCAAGTCAGAAACCGTTTGTCTTATGAGCAGTTCAGTGCATTTCTAGCCAATGTAAAGGAGTTGAACTCACACAAACAGACCAGAGAGGATACACTA]
[+] EMBL CB656848 [GCACCAGCGCCGGCGGCGATGGTGGCGGCGGCGGAGTTCGGGCTGACCGCGGAGGTGATGGCGGTGCTGCCGGAGGACCCG TTCGAGCAGCTGGACGTGGCGCGGAAGATCACCTCCATCGCGCTGGCGTCGCGCCTCGGGCGGCTCGAGGCCGAGGGCGCGCGGCTCCGCGCGCAGCTCGCCGAGCGCGACGCCGCGGCGGAGGACCTCAGCGAGCGCGTCGAGCAGCTCGACGCCGCGCTCGCGGTGGCCACCGGACGCCTCCGCCGCGCCGAGGAGGAGAAGGAGGCACTGCAGAGGGATAACTCATTGCTGTCAAACACCGTCAGGAGGCTGAACAGAGATGTTGCCAAGTTGGAAGTGTTCAAGAAGACGCTTATGCAGTCACTCCAGGAAGATGAAGATCCTGCTAACACTACTCCTAAGGCAAGGGTCAGCGAAACTTCAAATTTCTCCTCTGCAACATCTGTTGGAGATGAAGATTCTGCATTTCCAGTTTCCAAATCGTCACAATTATCAGAAACCGCAAGTTCAGTCTCAGAGGAAAGTAGTCATGTTGAGCCAGATGTACCCAGGCCACCCCGTCCACATGTATTTTTGCCATCGTACAACAGTACACCAAGGGTTACTCCCCCAGACTCACCT CCAAGGAGTTTCGCGTCAATATCACCT CCAAGGCGGCATTCAATTTCAATTACATCAAGGAATTTGTTTGATGACAGGTCCTCGGCCTATTCTGGTCATAGTTCAGTGACATCTCCATTTGATGCAGGAAGTCACACAGGACGAACACGAGTTGATGGAAA ]
[+] EMBL CB677494 [ GCGCCTGTTGCGATGGTGGCGGCGGCGGAGTTCGGGCTGACCGCGGAGGTGATGGCGGTGCTGCCGGAGGACCCGTTTCGAGCAGCTGGACGTGGCGCGGAAGATCACCTCCATCGCGCTGGCGTCGCGCCTCGGGCGGCTCGAGGCCGAGGGCGCGCGGCTCCGCGCGCAGCTCGCCGAGCGCGACGCCGCGGCGGAGGACCTCAGCGAGCGCGTCGAGCAGCTCGACGCCGCGCTCGCGGTGGCCACCGGACGCCTCCGCCGCGCCGAGGAGGAGAAGGAGGCACTGCAGAGGGATAACTCATTGCTGTCTAACACCGTCAGGAGGCTGAACAGAGATGTTGCCAAGTTGGAAGTGTTCAAGAAGACGCTTATGCAGTCACTCCAGGAAGATGAAGATCCTGCTAACACTACTCCTAAGGCAAGGGTCAGCGAAACTTCAAATTTCTCCTCTGCAACATCTGTTGGAGATGAAGATTCTGCATTTCCAGTTTCCAAATCGTCACAATTATCAGAAACCGCAAGTTCAGTCTCAGAGGAAAGTAGTCATGTTGAGCCAGATGTACCCAGGCCACCCCGTCCACATGTATTTTTGCCATCGTACAACAGTACACCAAGGGTTACTCCCCCAGACTCACCT CCAAGGAGTTTCGCGTCAATATCACCT CCAAGGCGGCATTCAATTTC ]
[+] EMBL CB617905 [ CCAAGCCGGAAGTGTTCAAGAAGACGCTTATGCAGTCACTCCAGGAAGATGAAGATCCTGCTAACACTACTCCTAAGGCACGGGTCAGCGAAACTTCAAATTTCTCCTCTGCAACATCTGTTGGAGATGAAGATTCTGCATTTCCAGTTTCCAAATCGTCACAATTATCAGAAACCGCAAGTTCAGTCTCAGAGGAAAGTAGTCATGTTGAGCCAGATGTACCCAGGCCACCCCGTCCACATGTATTTTTGCCATCGTACAACAGTACACCAAGGGTTACTCCCCCAGACTCACCT CCAAGGAGTTTCGCGTCAATATCACCT CCAAGGCGGCATTCAATTTCAATTACATCAAGGAATTTGTTTGATGACAGGTCCTCGGCCTATTCTGGTCATAGTTCAGTGACATCTCCATTTGATGCAGGAAGTCACACAGGACGAACACGAGTTGATGGAAAAGAGTTCTTCCGTCAAGTCAGAAACCGTTTGTCTTATGAGCAGTTCAGTGCATTTCTAGCCAATGTAAAGGAGTTGAACTCACACAAACAGACCAGAGAGGATACACT ]
[-] EMBL CB650051 [ TCCTGCTAACACTACTCCTAAGGCAAGGGTCAGCGAAACTTCAAATTTCTCCTCTGCAACATCTGTGGGAGATGAAGATTCTGCATTTCCAGTTTCCAAATCGTCACAATTATCAGAAACCGCAAGTTCAGTCTCAGAGGAAAGTAGTCATGTTGAGCCAGATGTACCCAGGCCACCCCGTCCACATGTATTTTTGCCATCGTACAACAGTACACCAAGGGTTACTCCCCCAGACTCACCT CCAAGGAGTTTCGCGTCAATATCACCT CCAAGGCGGCATTCAATTTCAATTACATCAAGGAATTTGTTTGATGACAGGTCCTCGGCCTATTCTGGTCATAGTTCAGTGACATCTCCATTTGATGCAGGAAGTCACACAGGACGAACACGAGTTGATGGAAAAGAGTTCTTCCGTCAAGTCAGAAACCGTTTGTCTTATGAGCAGTTCAGTGCATTTCTAGCCAATGTAAAGGAGTTGAACTCACACAAACAGACCAGAGAGGATACACTA]
[-] EMBL CB660309 [ CTAACACTACTCCTAAGGCAAGGGTCAGCGAAACTTCAAATTTCTCCTCTGCAACATCTGTTGGAGATGAAGATTCTGCATTTCCAGTTTCCAAATCGTCACAATTATCAGAAACCGCAAGTTCAGTCTCAGAGGAAAGTAGTCATGTTGAGCCAGATGTACCCAGGCCACCCCGTCCACATGTATTTTTGCCATCGTACAACAGTACACCAAGGGTTACTCCCCCAGACTCACCT CCAAGGAGTTTCGCGTCAATATCACCT CCAAGGCGGCATTCAATTTCAATTACATCAAGGAATTTGTTTGATGACAGGTCCTCGGCCTATTCTGGTCATAGTTCAGTGACATCTCCATTTGATGCAGGAAGTCACACAGGACGAACACGAGTTGATGGAAAAGAGTTCTTCCGTCAAGTCAGAAACCGTTTGTCTTATGAGCAGTTCAGTGCATTTCTAGCCAATGTAAAGGAGTTGAACTCACACAAACAGACCAGAGAGGATACACTA]
[-] EMBL CB660231 [ GTCAGCGAAACTTCAAATTTCTCCTCTGCAACATCTGTTGGAGATGAAGATTCTGCATTTCCAGTTTCCAAATCGTCACAATTATCAGAAACCGCAAGTTCAGTCTCAGAGGAAAGTAGTCATGTTGAGCCAGATGTACCCAGGCCACCCCGTCCACATGTATTTTTGCCATCGTACAACAGTACACCAAGGGTTACTCCCCCAGACTCACCT CCAAGGAGTTTCGCGTCAATATCACCT CCAAGGCGGCATTCAATTTCAATTACATCAAGGAATTTGTTTGATGACAGGTCCTCGGCCTATTCTGGTCATAGTTCAGTGACATCTCCATTTGATGCAGGAAGTCACACAGGACGAACACGAGTTGATGGAAAAGAGTTCTTCCGTCAAGTCAGAAACCGTTTGTCTTATGAGCAGTTCAGTGCATTTCTAGCCAATGTAAAGGAGTTGAACTCACACAAACAGACCAGAGAGGATACCCTA]
[-] EMBL CB656849 [ TGTGGGAGATGAAGATTCTGCATTTCCAGTTTCCAAATCGTCACAATTATCAGAAACCGCAAGTTCAGTCTCAGAGGAAAGTAGTCATGTTGAGCCAGATGTACCCAGGCCACCCCGTCCACATGTATTTTTGCCATCGTACAACAGTACACCAAGGGTTACTCCCCCAGACTCACCT CCAAGGAGTTTCGCGTCAATATCACCT CCAAGGCGGCATTCAATTTCAATTACATCAAGGAATTTGTTTGATGACAGGTCCTCGGCCTATTCTGGTCATAGTTCAGTGACATCTCCATTTGATGCAGGAAGTCACACAGGACGAACACGAGTTGATGGAAAAGAGTTCTTCCGTCAAGTCAGAAACCGTTTGTCTTATGAGCAGTTCAGTGCATTTCTAGCCAATGTAAAGGAGTTGAACTCACACAAACAGACCAGAGAGGATACACTA]
[-] EMBL CB672148 [ TTGGAGATGAAGATTCTGCATTTCCAGTTTCCAAATCGTCACAATTATCAGAAACCGCAAGTTCAGTCTCAGAGGAAAGTAGTCATGTTGAGCCAGATGTACCCAGGCCACCCCGTCCACATGTATTTTTGCCATCGTACAACAGTACACCAAGGGTTACTCCCCCAGACTCACCT CCAAGGAGTTTCGCGTCAATATCACCT CCAAGGCGGCATTCAATTTCAATTACATCAAGGAATTTGTTTGATGACAGGTCCTCGGCCTATTCTGGTCATAGTTCAGTGACATCTCCATTTGATGCAGGAAGTCACACAGGACGAACACGAGTTGATGGAAAAGAGTTCTTCCGTCAAGTCAGAAACCGTTTGTCTTATGAGCAGTTCAGTGCATTTCTAGCCAATGTAAAGGAGTTGAACTCACACAAACAGACCAGAGAGGATACACTA]
[+] EMBL AK062289 [ AGATTCTGCATTTCCAGTTTCCAAATCGTCACAATTATCAGAAACCGCAAGTTCAGTCTCAGAGGAAAGTAGTCATGTTGAGCCAGATGTACCCAGGCCACCCCGTCCACATGTATTTTTGCCATCGTACAACAGTACACCAAGGGTTACTCCCCCAGACTCACCT CCAAGGAGTTTCGCGTCAATATCACCT CCAAGGCGGCATTCAATTTCAATTACATCAAGGAATTTGTTTGATGACAGGTCCTCGGCCTATTCTGGTCATAGTTCAGTGACATCTCCATTTGATGCAGGAAGTCACACAGGACGAACACGAGTTGATGGAAAAGAGTTCTTCCGTCAAGTCAGAAACCGTTTGTCTTATGAGCAGTTCAGTGCATTTCTAGCCAATGTAAAGGAGTTGAACTCACACAAACAGACCAGAGAGGATACACT ]
[-] EMBL CB670240 [ TTTCCAAATCGTCACAATTATCAGAAACCGCAAGTTCAGTCTCAGAGGAAAGTAGTCATGTTGAGCCAGATGTACCCAGGCCACCCCGTCCACATGTATTTTTGCCATCGTACAACAGTACACCAAGGGTTACTCCCCCAGACTCACCT CCAAGGAGTTTCGCGTCAATATCACCT CCAAGGCGGCATTCAATTTCAATTACATCAAGGAATTTGTTTGATGACAGGTCCTCGGCCTATTCTGGTCATAGTTCAGTGACATCTCCATTTGATGCAGGAAGTCACACAGGACGAACCCGAGTTGATGGAAAAGAGTTCTTCCGTCAAGTCAGAAACCGTTTGTCTTATGAGCAGTTCAGTGCATTTCTAGCCAATGTAAAGGAGTTGAACTCCCCCAAACAGACCAGAGAGGATACCCTA]
[-] EMBL CB683373 [ TTTCCAAATCGTCACAATTATCAGAAACCGCAAGTTCAGTCTCAGAGGAAAGTAGTCATGTTGAGCCAGATGTACNCAGGCCACCCCGTCCACATGTATTTTTGCCATCGTACAACAGTACACCAAGGGTTACTCCCCCAGACTCACCT CCAAGGAGTTTCGCGTCAATATCACCT CCAAGGCGGCATTCAATTTCAATTACATCAAGGAATTTGTTTGATGACAGGTCCTCGGCCTATTCTGGTCATAGTTCAGTGACATCTCCATTTGATGCAGGAAGTCACACAGGACGAACACGAGTTGATGGAAAAGAGTTCTTCCGTCAAGTCAGAAACCGTTTGTCTTATGAGCAGTTCAGTGCATTTCTAGCCAATGTAAAGGAGTTGAACTCACACAAACAGACCAGAGAGGATACACTA]
[-] EMBL CB683827 [ CCGCAAGTTCAGTCTCAGAGGAAAGTAGTCATGTTGAGCCAGATGTACCCAGGCCACCCCGTCCACATGTATTTTTGCCATCGTACAACAGTACACCAAGGGTTACTCCCCCAGACTCACCT CCAAGGAGTTTCGCGTCAATATCACCT CCAAGGCGGCATTCAATTTCAATTACATCAAGGAATTTGTTTGATGACAGGTCCTCGGCCTATTCTGGTCATAGTTCAGTGACATCTCCATTTGATGCAGGAAGTCACACAGGACGAACACGAGTTGATGGAAAAGAGTTCTTCCGTCAAGTCAGAAACCGTTTGTCTTATGAGCAGTTCAGTGCATTTCTAGCCAATGTAAAGGAGTTGAACTCACCCAAACAGACCAGAGAGGATACACTA]
[+] EMBL AU082387 [ CAGTCTCAGAGGAAAGTAGTCATGTTGAGCCAGATGTACCCAGGCCACCCCGTCCACATGTATTTTTGCCATCGTACAACAGTACACCAAGGGTTACTCCCCCAGACTCACCTCCCAAGGAGTTTCGCGTCAATATCACCTCCCAAGGCGGCATTCAATTTCAATTACATCAAGGAATTTGTTTGATGACAGGTCCTCGGCCTATTCTGGTCATAGTTCAGTGACATCTCCATTTGATGCAGGAAGTCACACAGGACGAACACGAGTTGATGGAAAAGAGTTCTTCCGTCAAGTCAGAAACCGTTTGTCTTATGAGCAGTTCAGTGCATTTCTAGCCAATGTAAAGGAGTTGAACTCACACAAACAGACCAGAGAGGATACACT ]
[+] EMBL AU057215 [ AAGTAGTCATGTTGAGCCAGATGTACCCAGGCCACCCCGTCCACATGTATTTTTGCCATCGTACAACAGTACACCAAGGGTTACTCCCCCAGACTCACCT CCAAGGAGTTTCGCGTCAATATCACCT CCAAGGCGGCATTCAATTTCAATTACATCAAGGAATTTGTTTGATGACAGGTCCTCGGCCTATTCTGGTCATAGTTCAGTGACATCTCCATTTGATGCAGGAAGTCACACAGGACGAACACGAGTTGATGGAAAAGAGTTCTTCCGTCAAGTCAGAAACCGTTTGTCTTATGAGCAGTTCAGTGCATTTCTAGCCAATGTAAAGGAGTTGAACTCACACAAACAGACCAGAGAGGATACACT ]
consensusID : consensus_14203#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence
[NGNGNACGCGTGGGTGNTGGATGGTGGATATGCANGAGGCACTGCAGAGGGATAACTCATTGCTGTCAAACACCGTCAGGAGGCTGAACAGAGATGTTGCCAAGGTAATTGGACGTATTTTATTGCTCATTTGAATTTTCTGCGATGTGTGGTGACTCAGAATGTTTGCTCAAAGTATGTGTGGTGACTCAGAATGTTTGCTCAAAGTATGTTTTTGTCATCTGTTTTTCGCTTTGCTGTCCAGTTGGAAGTGTTCAAGAAGACGCTTATGCAGTCACTCCAGGAAGATGAAGATCCTGCTAACACTACTCCTAAGGCAAGGGTCAGCGAAACTTCAAATTTCTCCTCTGCAACATCTGTTGGANGTACTCCAAATATTTTGGGANGAATTTGGTGGTTCNAATTCACCGATTGCATGTGCCATATGTACCNCAGAGTACC]
[+] EMBL C72682 [NGNGNACGCGTGGGTGNTGGATGGTGGATATGCANGAGGCACTGCAGAGGGATAACTCATTGCTGTCAAACACCGTCAGGAGGCTGAACAGAGATGTTGCCAAGGTAATTGGACGTATTTTATTGCTCATTTGAATTTTCTGCGATGTGTGGTGACTCAGAATGTTTGCTCAAAGTATGTGTGGTGACTCAGAATGTTTGCTCAAAGTATGTTTTTGTCATCTGTTTTTCGCTTTGCTGTCCAGTTGGAAGTGTTCAAGAAGACGCTTATGCAGTCACTCCAGGAAGATGAAGATCCTGCTAACACTACTCCTAAGGCAAGGGTCAGCGAAACTTCAAATTTCTCCTCTGCAACATCTGTTGGANGTACTCCAAATATTTTGGGANGAATTTGGTGGTTCNAATTCACCGATTGCATGTGCCATATGTACCNCAGAGTACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14203#0 GCACCAGCGCCGGCGGCGATGGTGGCGGCGGCGGAGTTCGGGCTGACCGCGGAGGTGATG 60
consensus_14203#1 ------------------------------------------------------------
consensus_14203#0 GCGGTGCTGCCGGAGGACCCGTTCGAGCAGCTGGACGTGGCGCGGAAGATCACCTCCATC 120
consensus_14203#1 ------------------------------------------NGNGNACGCGTGGGTGNT 18
* *
consensus_14203#0 GCGCTGGCGTCGCGCCTCGGGCGGCTCGAGGCCGAGGGCGCGCGGCT-CCGCGCGCAGCT 179
consensus_14203#1 GGATGGTGGATATGCANGAGGCA-CTGCAGAGGGATAACTCATTGCTGTCAAACACCG-T 76
* * * ** *** ** ** ** * * *** * * * * *
consensus_14203#0 CGCCGAGCGCGACGCCGCGGCGGAGGACCTCAGCGAGCGCGTCGAGCAGCTCGACGCCGC 239
consensus_14203#1 CAGGAGGCTGAACAGAGATGTTGCCAAGGTAATTGGACGTATTTTATTGCTCAT--TTGA 134
* ** ** * * * * * * * ** * **** *
consensus_14203#0 GCTCGCGGTGGCCACCGGACGCCTCCGCCGCGCCGAGGAGGAGAAGGAGGCACTGCAGAG 299
consensus_14203#1 ATTTTCTGCGATGTGTGGTGACTCAGAATGTTTGCTCAAAGTATGTGTGGTGACTCAGAA 194
* * * * ** * * * * * ** ****
consensus_14203#0 GGATAACTCATTGCTGTCAAACACCGTCAGGAGGCTGAACAGAGATGTTGCCAAGTTGGA 359
consensus_14203#1 TGTTTGCTCAAAGTATGTTTTTGTCATCTG-----TTTTTCGCTTTGCTGTCCAGTTGGA 249
* * **** * * ** * * * ** ** * *******
consensus_14203#0 AGTGTTCAAGAAGACGCTTATGCAGTCACTCCAGGAAGATGAAGATCCTGCTAACACTAC 419
consensus_14203#1 AGTGTTCAAGAAGACGCTTATGCAGTCACTCCAGGAAGATGAAGATCCTGCTAACACTAC 309
************************************************************
consensus_14203#0 TCCTAAGGCAAGGGTCAGCGAAACTTCAAATTTCTCCTCTGCAACATCTGTTGGAGATGA 479
consensus_14203#1 TCCTAAGGCAAGGGTCAGCGAAACTTCAAATTTCTCCTCTGCAACATCTGTTGGANGTAC 369
******************************************************* *
consensus_14203#0 AGATTCTGCATTTCCAGTTTCCAAATCGTCACAATTATCAGAAACCGCAAGTTCAGTCT- 538
consensus_14203#1 TCCAAATATTTTGGGANGAATTTGGTGGTTCNAATT--CACCGATTGCATGTGCCATATG 427
* ** * * ** **** ** * *** ** * * *
consensus_14203#0 CAGAGGAAAGTAGTCATGTTGAGCCAGATGTACCCAGGCCACCCCGTCCACATGTATTTT 598
consensus_14203#1 TACCNCAGAGTACC---------------------------------------------- 441
* * ****
consensus_14203#0 TGCCATCGTACAACAGTACACCAAGGGTTACTCCCCCAGACTCACCTCCAAGGAGTTTCG 658
consensus_14203#1 ------------------------------------------------------------
consensus_14203#0 CGTCAATATCACCTCCAAGGCGGCATTCAATTTCAATTACATCAAGGAATTTGTTTGATG 718
consensus_14203#1 ------------------------------------------------------------
consensus_14203#0 ACAGGTCCTCGGCCTATTCTGGTCATAGTTCAGTGACATCTCCATTTGATGCAGGAAGTC 778
consensus_14203#1 ------------------------------------------------------------
consensus_14203#0 ACACAGGACGAACACGAGTTGATGGAAAAGAGTTCTTCCGTCAAGTCAGAAACCGTTTGT 838
consensus_14203#1 ------------------------------------------------------------
consensus_14203#0 CTTATGAGCAGTTCAGTGCATTTCTAGCCAATGTAAAGGAGTTGAACTCACACAAACAGA 898
consensus_14203#1 ------------------------------------------------------------
consensus_14203#0 CCAGAGAGGATACACTA 915
consensus_14203#1 -----------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||