These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14203#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 915 fasta sequence [GCACCAGCGCCGGCGGCGATGGTGGCGGCGGCGGAGTTCGGGCTGACCGCGGAGGTGATGGCGGTGCTGCCGGAGGACCCG-TTCGAGCAGCTGGACGTGGCGCGGAAGATCACCTCCATCGCGCTGGCGTCGCGCCTCGGGCGGCTCGAGGCCGAGGGCGCGCGGCTCCGCGCGCAGCTCGCCGAGCGCGACGCCGCGGCGGAGGACCTCAGCGAGCGCGTCGAGCAGCTCGACGCCGCGCTCGCGGTGGCCACCGGACGCCTCCGCCGCGCCGAGGAGGAGAAGGAGGCACTGCAGAGGGATAACTCATTGCTGTCAAACACCGTCAGGAGGCTGAACAGAGATGTTGCCAAGTTGGAAGTGTTCAAGAAGACGCTTATGCAGTCACTCCAGGAAGATGAAGATCCTGCTAACACTACTCCTAAGGCAAGGGTCAGCGAAACTTCAAATTTCTCCTCTGCAACATCTGTTGGAGATGAAGATTCTGCATTTCCAGTTTCCAAATCGTCACAATTATCAGAAACCGCAAGTTCAGTCTCAGAGGAAAGTAGTCATGTTGAGCCAGATGTACCCAGGCCACCCCGTCCACATGTATTTTTGCCATCGTACAACAGTACACCAAGGGTTACTCCCCCAGACTCACCT-CCAAGGAGTTTCGCGTCAATATCACCT-CCAAGGCGGCATTCAATTTCAATTACATCAAGGAATTTGTTTGATGACAGGTCCTCGGCCTATTCTGGTCATAGTTCAGTGACATCTCCATTTGATGCAGGAAGTCACACAGGACGAACACGAGTTGATGGAAAAGAGTTCTTCCGTCAAGTCAGAAACCGTTTGTCTTATGAGCAGTTCAGTGCATTTCTAGCCAATGTAAAGGAGTTGAACTCACACAAACAGACCAGAGAGGATACACTA] [+] EMBL CB656848 [GCACCAGCGCCGGCGGCGATGGTGGCGGCGGCGGAGTTCGGGCTGACCGCGGAGGTGATGGCGGTGCTGCCGGAGGACCCG TTCGAGCAGCTGGACGTGGCGCGGAAGATCACCTCCATCGCGCTGGCGTCGCGCCTCGGGCGGCTCGAGGCCGAGGGCGCGCGGCTCCGCGCGCAGCTCGCCGAGCGCGACGCCGCGGCGGAGGACCTCAGCGAGCGCGTCGAGCAGCTCGACGCCGCGCTCGCGGTGGCCACCGGACGCCTCCGCCGCGCCGAGGAGGAGAAGGAGGCACTGCAGAGGGATAACTCATTGCTGTCAAACACCGTCAGGAGGCTGAACAGAGATGTTGCCAAGTTGGAAGTGTTCAAGAAGACGCTTATGCAGTCACTCCAGGAAGATGAAGATCCTGCTAACACTACTCCTAAGGCAAGGGTCAGCGAAACTTCAAATTTCTCCTCTGCAACATCTGTTGGAGATGAAGATTCTGCATTTCCAGTTTCCAAATCGTCACAATTATCAGAAACCGCAAGTTCAGTCTCAGAGGAAAGTAGTCATGTTGAGCCAGATGTACCCAGGCCACCCCGTCCACATGTATTTTTGCCATCGTACAACAGTACACCAAGGGTTACTCCCCCAGACTCACCT CCAAGGAGTTTCGCGTCAATATCACCT CCAAGGCGGCATTCAATTTCAATTACATCAAGGAATTTGTTTGATGACAGGTCCTCGGCCTATTCTGGTCATAGTTCAGTGACATCTCCATTTGATGCAGGAAGTCACACAGGACGAACACGAGTTGATGGAAA ] [+] EMBL CB677494 [ GCGCCTGTTGCGATGGTGGCGGCGGCGGAGTTCGGGCTGACCGCGGAGGTGATGGCGGTGCTGCCGGAGGACCCGTTTCGAGCAGCTGGACGTGGCGCGGAAGATCACCTCCATCGCGCTGGCGTCGCGCCTCGGGCGGCTCGAGGCCGAGGGCGCGCGGCTCCGCGCGCAGCTCGCCGAGCGCGACGCCGCGGCGGAGGACCTCAGCGAGCGCGTCGAGCAGCTCGACGCCGCGCTCGCGGTGGCCACCGGACGCCTCCGCCGCGCCGAGGAGGAGAAGGAGGCACTGCAGAGGGATAACTCATTGCTGTCTAACACCGTCAGGAGGCTGAACAGAGATGTTGCCAAGTTGGAAGTGTTCAAGAAGACGCTTATGCAGTCACTCCAGGAAGATGAAGATCCTGCTAACACTACTCCTAAGGCAAGGGTCAGCGAAACTTCAAATTTCTCCTCTGCAACATCTGTTGGAGATGAAGATTCTGCATTTCCAGTTTCCAAATCGTCACAATTATCAGAAACCGCAAGTTCAGTCTCAGAGGAAAGTAGTCATGTTGAGCCAGATGTACCCAGGCCACCCCGTCCACATGTATTTTTGCCATCGTACAACAGTACACCAAGGGTTACTCCCCCAGACTCACCT CCAAGGAGTTTCGCGTCAATATCACCT CCAAGGCGGCATTCAATTTC ] [+] EMBL CB617905 [ CCAAGCCGGAAGTGTTCAAGAAGACGCTTATGCAGTCACTCCAGGAAGATGAAGATCCTGCTAACACTACTCCTAAGGCACGGGTCAGCGAAACTTCAAATTTCTCCTCTGCAACATCTGTTGGAGATGAAGATTCTGCATTTCCAGTTTCCAAATCGTCACAATTATCAGAAACCGCAAGTTCAGTCTCAGAGGAAAGTAGTCATGTTGAGCCAGATGTACCCAGGCCACCCCGTCCACATGTATTTTTGCCATCGTACAACAGTACACCAAGGGTTACTCCCCCAGACTCACCT CCAAGGAGTTTCGCGTCAATATCACCT CCAAGGCGGCATTCAATTTCAATTACATCAAGGAATTTGTTTGATGACAGGTCCTCGGCCTATTCTGGTCATAGTTCAGTGACATCTCCATTTGATGCAGGAAGTCACACAGGACGAACACGAGTTGATGGAAAAGAGTTCTTCCGTCAAGTCAGAAACCGTTTGTCTTATGAGCAGTTCAGTGCATTTCTAGCCAATGTAAAGGAGTTGAACTCACACAAACAGACCAGAGAGGATACACT ] [-] EMBL CB650051 [ TCCTGCTAACACTACTCCTAAGGCAAGGGTCAGCGAAACTTCAAATTTCTCCTCTGCAACATCTGTGGGAGATGAAGATTCTGCATTTCCAGTTTCCAAATCGTCACAATTATCAGAAACCGCAAGTTCAGTCTCAGAGGAAAGTAGTCATGTTGAGCCAGATGTACCCAGGCCACCCCGTCCACATGTATTTTTGCCATCGTACAACAGTACACCAAGGGTTACTCCCCCAGACTCACCT CCAAGGAGTTTCGCGTCAATATCACCT CCAAGGCGGCATTCAATTTCAATTACATCAAGGAATTTGTTTGATGACAGGTCCTCGGCCTATTCTGGTCATAGTTCAGTGACATCTCCATTTGATGCAGGAAGTCACACAGGACGAACACGAGTTGATGGAAAAGAGTTCTTCCGTCAAGTCAGAAACCGTTTGTCTTATGAGCAGTTCAGTGCATTTCTAGCCAATGTAAAGGAGTTGAACTCACACAAACAGACCAGAGAGGATACACTA] [-] EMBL CB660309 [ CTAACACTACTCCTAAGGCAAGGGTCAGCGAAACTTCAAATTTCTCCTCTGCAACATCTGTTGGAGATGAAGATTCTGCATTTCCAGTTTCCAAATCGTCACAATTATCAGAAACCGCAAGTTCAGTCTCAGAGGAAAGTAGTCATGTTGAGCCAGATGTACCCAGGCCACCCCGTCCACATGTATTTTTGCCATCGTACAACAGTACACCAAGGGTTACTCCCCCAGACTCACCT CCAAGGAGTTTCGCGTCAATATCACCT CCAAGGCGGCATTCAATTTCAATTACATCAAGGAATTTGTTTGATGACAGGTCCTCGGCCTATTCTGGTCATAGTTCAGTGACATCTCCATTTGATGCAGGAAGTCACACAGGACGAACACGAGTTGATGGAAAAGAGTTCTTCCGTCAAGTCAGAAACCGTTTGTCTTATGAGCAGTTCAGTGCATTTCTAGCCAATGTAAAGGAGTTGAACTCACACAAACAGACCAGAGAGGATACACTA] [-] EMBL CB660231 [ GTCAGCGAAACTTCAAATTTCTCCTCTGCAACATCTGTTGGAGATGAAGATTCTGCATTTCCAGTTTCCAAATCGTCACAATTATCAGAAACCGCAAGTTCAGTCTCAGAGGAAAGTAGTCATGTTGAGCCAGATGTACCCAGGCCACCCCGTCCACATGTATTTTTGCCATCGTACAACAGTACACCAAGGGTTACTCCCCCAGACTCACCT CCAAGGAGTTTCGCGTCAATATCACCT CCAAGGCGGCATTCAATTTCAATTACATCAAGGAATTTGTTTGATGACAGGTCCTCGGCCTATTCTGGTCATAGTTCAGTGACATCTCCATTTGATGCAGGAAGTCACACAGGACGAACACGAGTTGATGGAAAAGAGTTCTTCCGTCAAGTCAGAAACCGTTTGTCTTATGAGCAGTTCAGTGCATTTCTAGCCAATGTAAAGGAGTTGAACTCACACAAACAGACCAGAGAGGATACCCTA] [-] EMBL CB656849 [ TGTGGGAGATGAAGATTCTGCATTTCCAGTTTCCAAATCGTCACAATTATCAGAAACCGCAAGTTCAGTCTCAGAGGAAAGTAGTCATGTTGAGCCAGATGTACCCAGGCCACCCCGTCCACATGTATTTTTGCCATCGTACAACAGTACACCAAGGGTTACTCCCCCAGACTCACCT CCAAGGAGTTTCGCGTCAATATCACCT CCAAGGCGGCATTCAATTTCAATTACATCAAGGAATTTGTTTGATGACAGGTCCTCGGCCTATTCTGGTCATAGTTCAGTGACATCTCCATTTGATGCAGGAAGTCACACAGGACGAACACGAGTTGATGGAAAAGAGTTCTTCCGTCAAGTCAGAAACCGTTTGTCTTATGAGCAGTTCAGTGCATTTCTAGCCAATGTAAAGGAGTTGAACTCACACAAACAGACCAGAGAGGATACACTA] [-] EMBL CB672148 [ TTGGAGATGAAGATTCTGCATTTCCAGTTTCCAAATCGTCACAATTATCAGAAACCGCAAGTTCAGTCTCAGAGGAAAGTAGTCATGTTGAGCCAGATGTACCCAGGCCACCCCGTCCACATGTATTTTTGCCATCGTACAACAGTACACCAAGGGTTACTCCCCCAGACTCACCT CCAAGGAGTTTCGCGTCAATATCACCT CCAAGGCGGCATTCAATTTCAATTACATCAAGGAATTTGTTTGATGACAGGTCCTCGGCCTATTCTGGTCATAGTTCAGTGACATCTCCATTTGATGCAGGAAGTCACACAGGACGAACACGAGTTGATGGAAAAGAGTTCTTCCGTCAAGTCAGAAACCGTTTGTCTTATGAGCAGTTCAGTGCATTTCTAGCCAATGTAAAGGAGTTGAACTCACACAAACAGACCAGAGAGGATACACTA] [+] EMBL AK062289 [ AGATTCTGCATTTCCAGTTTCCAAATCGTCACAATTATCAGAAACCGCAAGTTCAGTCTCAGAGGAAAGTAGTCATGTTGAGCCAGATGTACCCAGGCCACCCCGTCCACATGTATTTTTGCCATCGTACAACAGTACACCAAGGGTTACTCCCCCAGACTCACCT CCAAGGAGTTTCGCGTCAATATCACCT CCAAGGCGGCATTCAATTTCAATTACATCAAGGAATTTGTTTGATGACAGGTCCTCGGCCTATTCTGGTCATAGTTCAGTGACATCTCCATTTGATGCAGGAAGTCACACAGGACGAACACGAGTTGATGGAAAAGAGTTCTTCCGTCAAGTCAGAAACCGTTTGTCTTATGAGCAGTTCAGTGCATTTCTAGCCAATGTAAAGGAGTTGAACTCACACAAACAGACCAGAGAGGATACACT ] [-] EMBL CB670240 [ TTTCCAAATCGTCACAATTATCAGAAACCGCAAGTTCAGTCTCAGAGGAAAGTAGTCATGTTGAGCCAGATGTACCCAGGCCACCCCGTCCACATGTATTTTTGCCATCGTACAACAGTACACCAAGGGTTACTCCCCCAGACTCACCT CCAAGGAGTTTCGCGTCAATATCACCT CCAAGGCGGCATTCAATTTCAATTACATCAAGGAATTTGTTTGATGACAGGTCCTCGGCCTATTCTGGTCATAGTTCAGTGACATCTCCATTTGATGCAGGAAGTCACACAGGACGAACCCGAGTTGATGGAAAAGAGTTCTTCCGTCAAGTCAGAAACCGTTTGTCTTATGAGCAGTTCAGTGCATTTCTAGCCAATGTAAAGGAGTTGAACTCCCCCAAACAGACCAGAGAGGATACCCTA] [-] EMBL CB683373 [ TTTCCAAATCGTCACAATTATCAGAAACCGCAAGTTCAGTCTCAGAGGAAAGTAGTCATGTTGAGCCAGATGTACNCAGGCCACCCCGTCCACATGTATTTTTGCCATCGTACAACAGTACACCAAGGGTTACTCCCCCAGACTCACCT CCAAGGAGTTTCGCGTCAATATCACCT CCAAGGCGGCATTCAATTTCAATTACATCAAGGAATTTGTTTGATGACAGGTCCTCGGCCTATTCTGGTCATAGTTCAGTGACATCTCCATTTGATGCAGGAAGTCACACAGGACGAACACGAGTTGATGGAAAAGAGTTCTTCCGTCAAGTCAGAAACCGTTTGTCTTATGAGCAGTTCAGTGCATTTCTAGCCAATGTAAAGGAGTTGAACTCACACAAACAGACCAGAGAGGATACACTA] [-] EMBL CB683827 [ CCGCAAGTTCAGTCTCAGAGGAAAGTAGTCATGTTGAGCCAGATGTACCCAGGCCACCCCGTCCACATGTATTTTTGCCATCGTACAACAGTACACCAAGGGTTACTCCCCCAGACTCACCT CCAAGGAGTTTCGCGTCAATATCACCT CCAAGGCGGCATTCAATTTCAATTACATCAAGGAATTTGTTTGATGACAGGTCCTCGGCCTATTCTGGTCATAGTTCAGTGACATCTCCATTTGATGCAGGAAGTCACACAGGACGAACACGAGTTGATGGAAAAGAGTTCTTCCGTCAAGTCAGAAACCGTTTGTCTTATGAGCAGTTCAGTGCATTTCTAGCCAATGTAAAGGAGTTGAACTCACCCAAACAGACCAGAGAGGATACACTA] [+] EMBL AU082387 [ CAGTCTCAGAGGAAAGTAGTCATGTTGAGCCAGATGTACCCAGGCCACCCCGTCCACATGTATTTTTGCCATCGTACAACAGTACACCAAGGGTTACTCCCCCAGACTCACCTCCCAAGGAGTTTCGCGTCAATATCACCTCCCAAGGCGGCATTCAATTTCAATTACATCAAGGAATTTGTTTGATGACAGGTCCTCGGCCTATTCTGGTCATAGTTCAGTGACATCTCCATTTGATGCAGGAAGTCACACAGGACGAACACGAGTTGATGGAAAAGAGTTCTTCCGTCAAGTCAGAAACCGTTTGTCTTATGAGCAGTTCAGTGCATTTCTAGCCAATGTAAAGGAGTTGAACTCACACAAACAGACCAGAGAGGATACACT ] [+] EMBL AU057215 [ AAGTAGTCATGTTGAGCCAGATGTACCCAGGCCACCCCGTCCACATGTATTTTTGCCATCGTACAACAGTACACCAAGGGTTACTCCCCCAGACTCACCT CCAAGGAGTTTCGCGTCAATATCACCT CCAAGGCGGCATTCAATTTCAATTACATCAAGGAATTTGTTTGATGACAGGTCCTCGGCCTATTCTGGTCATAGTTCAGTGACATCTCCATTTGATGCAGGAAGTCACACAGGACGAACACGAGTTGATGGAAAAGAGTTCTTCCGTCAAGTCAGAAACCGTTTGTCTTATGAGCAGTTCAGTGCATTTCTAGCCAATGTAAAGGAGTTGAACTCACACAAACAGACCAGAGAGGATACACT ] consensusID : consensus_14203#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence [NGNGNACGCGTGGGTGNTGGATGGTGGATATGCANGAGGCACTGCAGAGGGATAACTCATTGCTGTCAAACACCGTCAGGAGGCTGAACAGAGATGTTGCCAAGGTAATTGGACGTATTTTATTGCTCATTTGAATTTTCTGCGATGTGTGGTGACTCAGAATGTTTGCTCAAAGTATGTGTGGTGACTCAGAATGTTTGCTCAAAGTATGTTTTTGTCATCTGTTTTTCGCTTTGCTGTCCAGTTGGAAGTGTTCAAGAAGACGCTTATGCAGTCACTCCAGGAAGATGAAGATCCTGCTAACACTACTCCTAAGGCAAGGGTCAGCGAAACTTCAAATTTCTCCTCTGCAACATCTGTTGGANGTACTCCAAATATTTTGGGANGAATTTGGTGGTTCNAATTCACCGATTGCATGTGCCATATGTACCNCAGAGTACC] [+] EMBL C72682 [NGNGNACGCGTGGGTGNTGGATGGTGGATATGCANGAGGCACTGCAGAGGGATAACTCATTGCTGTCAAACACCGTCAGGAGGCTGAACAGAGATGTTGCCAAGGTAATTGGACGTATTTTATTGCTCATTTGAATTTTCTGCGATGTGTGGTGACTCAGAATGTTTGCTCAAAGTATGTGTGGTGACTCAGAATGTTTGCTCAAAGTATGTTTTTGTCATCTGTTTTTCGCTTTGCTGTCCAGTTGGAAGTGTTCAAGAAGACGCTTATGCAGTCACTCCAGGAAGATGAAGATCCTGCTAACACTACTCCTAAGGCAAGGGTCAGCGAAACTTCAAATTTCTCCTCTGCAACATCTGTTGGANGTACTCCAAATATTTTGGGANGAATTTGGTGGTTCNAATTCACCGATTGCATGTGCCATATGTACCNCAGAGTACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14203#0 GCACCAGCGCCGGCGGCGATGGTGGCGGCGGCGGAGTTCGGGCTGACCGCGGAGGTGATG 60 consensus_14203#1 ------------------------------------------------------------ consensus_14203#0 GCGGTGCTGCCGGAGGACCCGTTCGAGCAGCTGGACGTGGCGCGGAAGATCACCTCCATC 120 consensus_14203#1 ------------------------------------------NGNGNACGCGTGGGTGNT 18 * * consensus_14203#0 GCGCTGGCGTCGCGCCTCGGGCGGCTCGAGGCCGAGGGCGCGCGGCT-CCGCGCGCAGCT 179 consensus_14203#1 GGATGGTGGATATGCANGAGGCA-CTGCAGAGGGATAACTCATTGCTGTCAAACACCG-T 76 * * * ** *** ** ** ** * * *** * * * * * consensus_14203#0 CGCCGAGCGCGACGCCGCGGCGGAGGACCTCAGCGAGCGCGTCGAGCAGCTCGACGCCGC 239 consensus_14203#1 CAGGAGGCTGAACAGAGATGTTGCCAAGGTAATTGGACGTATTTTATTGCTCAT--TTGA 134 * ** ** * * * * * * * ** * **** * consensus_14203#0 GCTCGCGGTGGCCACCGGACGCCTCCGCCGCGCCGAGGAGGAGAAGGAGGCACTGCAGAG 299 consensus_14203#1 ATTTTCTGCGATGTGTGGTGACTCAGAATGTTTGCTCAAAGTATGTGTGGTGACTCAGAA 194 * * * * ** * * * * * ** **** consensus_14203#0 GGATAACTCATTGCTGTCAAACACCGTCAGGAGGCTGAACAGAGATGTTGCCAAGTTGGA 359 consensus_14203#1 TGTTTGCTCAAAGTATGTTTTTGTCATCTG-----TTTTTCGCTTTGCTGTCCAGTTGGA 249 * * **** * * ** * * * ** ** * ******* consensus_14203#0 AGTGTTCAAGAAGACGCTTATGCAGTCACTCCAGGAAGATGAAGATCCTGCTAACACTAC 419 consensus_14203#1 AGTGTTCAAGAAGACGCTTATGCAGTCACTCCAGGAAGATGAAGATCCTGCTAACACTAC 309 ************************************************************ consensus_14203#0 TCCTAAGGCAAGGGTCAGCGAAACTTCAAATTTCTCCTCTGCAACATCTGTTGGAGATGA 479 consensus_14203#1 TCCTAAGGCAAGGGTCAGCGAAACTTCAAATTTCTCCTCTGCAACATCTGTTGGANGTAC 369 ******************************************************* * consensus_14203#0 AGATTCTGCATTTCCAGTTTCCAAATCGTCACAATTATCAGAAACCGCAAGTTCAGTCT- 538 consensus_14203#1 TCCAAATATTTTGGGANGAATTTGGTGGTTCNAATT--CACCGATTGCATGTGCCATATG 427 * ** * * ** **** ** * *** ** * * * consensus_14203#0 CAGAGGAAAGTAGTCATGTTGAGCCAGATGTACCCAGGCCACCCCGTCCACATGTATTTT 598 consensus_14203#1 TACCNCAGAGTACC---------------------------------------------- 441 * * **** consensus_14203#0 TGCCATCGTACAACAGTACACCAAGGGTTACTCCCCCAGACTCACCTCCAAGGAGTTTCG 658 consensus_14203#1 ------------------------------------------------------------ consensus_14203#0 CGTCAATATCACCTCCAAGGCGGCATTCAATTTCAATTACATCAAGGAATTTGTTTGATG 718 consensus_14203#1 ------------------------------------------------------------ consensus_14203#0 ACAGGTCCTCGGCCTATTCTGGTCATAGTTCAGTGACATCTCCATTTGATGCAGGAAGTC 778 consensus_14203#1 ------------------------------------------------------------ consensus_14203#0 ACACAGGACGAACACGAGTTGATGGAAAAGAGTTCTTCCGTCAAGTCAGAAACCGTTTGT 838 consensus_14203#1 ------------------------------------------------------------ consensus_14203#0 CTTATGAGCAGTTCAGTGCATTTCTAGCCAATGTAAAGGAGTTGAACTCACACAAACAGA 898 consensus_14203#1 ------------------------------------------------------------ consensus_14203#0 CCAGAGAGGATACACTA 915 consensus_14203#1 ----------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||