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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14204#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 806 fasta sequence
[CTCTCTCTCTCTCTCCCCCATCTCCATGCCGCCATAAGTATCAGCAGCATCGCACCCGGAATCGGAATCCCCAAACCCAACACCATCACCCCCCAACAACAAGAGATCATCGAAGCCCCAACAAGTCGCATGACATCCATGGCGACGCCGCCGCCCAAGACCCTCCTCCTGCTCGTCCTCGCGCTATCCGTCATCCTCGTCTCGGCCACCGCGTTCCACCACCACCACCACCACGACGGAGGAGCCGAAGCTGGAGGAGGAGGAGGAGGGGGAGGCGGGTTCTTCGAGGTGCCGTGGTTCGGCCCGCCGGGGGGAGGCGGGTG-GGGGGCGTGGGGAGCCGGCTACGGCGG-CGCCGGA-GG-ACACGAGATG-GCGCGGCCGTCGACGG-TGTGCATGGAGAAGGGCGCCTGCTACAAGAAGCGGCTCACC-TGCCCGGAAAAGTGC-TTCAAGTCC-TTCAGCTTCAAGGACAAGCACGGCGGCGGCGGC-GGCGGCGGCGGCGGGTGCAGCTTCGA-TTGCAACAAG-TGCG-AGGCCACCTGCTAATTAATCAAACCGAA-TGATCCATGGA-TGGCGAAGAATCGATGGCCCTCTCTACTGAAACTGATGGATGTGTATGGTATGGGGTG-TTGAATTAATCG-TCAGTTATTAGAGTTTTGTTAATTAGCTACTTAC-TGAATGGAA-TGGAATGTAATGAAATA-TATTTTGG-TGAGCTGCGAGAGTC-TGTAAGTATT-CAGGTGTGTGTG-TGGTGTTC-TTGATGATAATGATGAA-TAAAACGAGAGGAATTCATCGATTAAAAAAAAATAAAAAAAAAA]
[+] EMBL CA758614 [CTCTCTCTCTCTCTCCCCCATCTCCATGCCGCCATAAGTATCAGCAGCATCGCACCCGGAATCGGAATCCCCAAACCCAACACCATCACCCCCCAACAACAAGAGATCATCGAAGCCCCAACAAGTCGCATGACATCCATGGCGACGCTGCCGCCCAAGACCCTCCTCCTGCTCGTCCTCGCGCTATCCGTCATCCTCGTCTCGGCCACCGCGTTCCACCACCACCACCACCACGA ]
[+] EMBL AK121537 [ CAAACCCAACCCCATCACCCCCCAACAACAAGAGATCATCGAAGCCCCAACAAGTCGCATGACATCCATGGCGACGCCGCCGCCCAAGACCCTCCTCCTGCTCGTCCTCGCGCTATCCGTCATCCTCGTCTCGGCCACCGCGTTCCACCACCACCACCACCACGACGGAGGAGCCGAAGCTGGAGGAGGAGGAGGAGGGGGAGGCGGGTTCTTCGAGGTGCCGTGGTTCGGCCCGCCGGGGGGAGGCGGGTG GGGGGCGTGGGGAGCCGGCTACGGCGG CGCCGGA GG ACACGAGATG GCGCGGCCGTCGACGG TGTGCATGGAGAAGGGCGCCTGCTACAAGAAGCGGCTCACC TGCCCGGAAAAGTGC TTCAAGTCC TTCAGCTTCAAGGACAAGCACGGCGGCGGCGGC GGCGGCGGCGGCGGGTGCAGCTTCGA TTGCAACAAG TGCG AGGCCACCTGCTAATTAATCAAACCGAA TGATCCATGGA TGGCGAAGAATCGATGGCCCTCTCTACTGAAACTGATGGATGTGTATGGTATGGGGTG TTGAATTAATCG TCAGTTATTAGAGTTTTGTTAATTAGCTACTTAC TGAATGGAA TGGAATGTAATGAAATA TATTTTGG TGAGCTGCGAGAGTC TGTAAGTATT CAGGTGTGTGTG TGGTGTTC TTGATGATAATGATGAA TAAAACGAGAG ]
[+] EMBL C26908 [ ATCACCCCCCAACAACAAGAGATCATCGAAGCCCCAACAAGTCGCATGANATCCATGGCGACG CGCCGCCCAANACCCTCCTCCTGCTCGTCCTCGCGCTATCCGTNATCCTCGTNTCGGCCACCGCNTTCCACCACCACCACCACCACGACGGAGGAGCCGAAGCTGGNGGAGGAGGAGGNGGGGGAGGCGGGTTCTTCGAGGTGCCGTGGTTCGGCCCGCCGGGGGGAGGCGGGTG GGGGGCGTGGGGAGCCGGCTACGNGTC CGCCG ]
[+] EMBL AU071072 [ CACCCCCCAACAACAAGAGATCATCGAAGCCCCAACAAGTCGCATGACATCCATGGCGACGCCGCCGCCCAAGACCCTCCTCCTGCTCGTCCTCGCGCTATCCGTCATCCTCGTCTCGGCCACCGCGTTCCACCACCACCACCACCACGACGGAGGAGCCGAAGCTGGAGGAGGAGGAGGAGGGGGAGGCGGGTTCTTCGAGGTGCCGTGGTTCGGCCCGCCGGGGGGAGGCGGGTG GGGGGCGTGGGGAGCCGGCTACGGCGGNCGCCGGA GG ACACGAGATG GCGCGGCCGTCGACGG TGTGCATGGAGAAGGGCGCCTGCTACAAGAAGCGGCTCACCTTGCCCGGAAAAGTGCTTTCAAGTCCTTTCAGCTTCAAGGACAAGCACGGCGGCGGCGGCGGGCGGCGGCGGCGGGTGCAGCTTCGATTTGCAACAAGTTGCGAAGGCCACCTGCTAATTAATCAAACCGAATTGATCCATGGATTGGCGAAGAATCGATGGCCCTCTCTACTGAAACTGATNGATGTGTAT GTATGGGGTGTTTGAATTAATCG TCATTTATTAGAGTTTTGTTAATTAGCTACTTACTTGAATGGAATTGGAATTTAANTNAATATTATTTTGGTTAAGCTGCGAAAATCTTGTAAGTATTCCAGGTGTGTGTGTTGGTGTTCTTTAATAATAATGATTAANTAAAACGA ]
[+] EMBL C27406 [ CCCCCCAACAACAAGAGATCATCGAAGCCCCAACAAGTCGCATGACATCCATGGCGACG CGCCGCCCAAGACCCTCCTCCTGCTCNTCCTCGCGCTATCCGTCATCCTCGTCTCGGCCACCGCGTTCCACCACCACCACCACCACGACGGAGGAGCCGAAGCTGGAGGAGGAGGAGGAGGGGGAGGCGGGTTCTTCGAGGTGCCGTGGTTC GNCCGCC GGGGGAG GGTTGNGGGGGCGTNGGGAGCCGGCTAC G CGCCGGATGGAACACGAGATGNGCGCGG CGTCGACGG TGTtc ]
[+] EMBL OSS2209A [ CCCCCAACAACAAGAGATCATCGAAGCCCCAACAAGTCGCATGACATCCATGGCGACGCCGCCGCCCAAGACCCTCCTCCTGCTCGTCCTCGCGCTATCCGTCATCCTCGTCTCGGCCACCGCGTTCCACCACCACCACCACCACGACGGAGGAGCCGAAGCTGGAGGAGGAGGAGGAGGGGGAGGCGGGTTCTTCGAGGTGCCGTGGTTCGGCCCGCCGGGGGGAGGCGGGTN GGGGGCGTGGGGAGCCGGCTACGNGNN NGNCGGA GG ACACGAGATG GCGCGGCCGTCGACGGTTNTGCATTGAGAAGGGCGnttc ]
[+] EMBL C27607 [ nCCAACAACAAGAGATCATCGAAGCCCCAACAAGTCGCATGACATCCATNGCGACG CNCCNCCCAAGACCCTNCTCCTTCTCGTCCTCGNGCTATCCGTCATCCTCGTCTCNGCCACCGCGTTCCACCACCACCACCACCACGACGGAGGAGCCGAAGCTNGAGGAGGAGGAGGAGGGGGAGGCGGGTTCTTCGAGG ]
[+] EMBL AU101706 [ GGCGG CGCCGGA GG ACACGAGATG GCGCGGCCGTCGACGG TGTGCATGGAGAAGGGCGCCTGCTACAAGAAGCGGCTCACC TGCCCGGAAAAGTGC TTCAAGTCC TTCAGCTTCAAGGACAAGCACGGCGGCGGCGGC GGCGGCGGCGGCGGGTGCAGCTTCGA TTGCAACAAG TGCG AGGCCACCTGCTAATTAATCAAACCGAA TGATCCATGGA TGGCGAAGAATCGATGGCCCTCTCTACTGAAACTGATGGATGTGTATGGTATGGGGTG TTGAATTAATCG TCAGTTATTAGAGTTTTGTTAATTAGCTACTTAC TGAATGGAA TGGAATGTAATGAAATA TATTTTGG TGAGCTGCGAGAGTC TGTAAGTATT CAGGTGTGTGTG TGGTGTTC TTGATGATAATGATGAA TAAAACGAGAGGAATTCATCGATTAAAAAAA ]
[+] EMBL AU092579 [ GGCGG CGCCGGA GG ACACGAGATG GCGCGGCCGTCGACGG TGTGCATGGAGAAGGGCGCCTGCTACAAGAAGCGGCTCACC TGCCCGGAAAAGTGC TTCAAGTCC TTCAGCTTCAAGGACAAGCACGGCGGCGGCGGC GGCGGCGGCGGCGGGTGCAGCTTCGA TTGCAACAAG TGCG AGGCCACCTGCTAATTAATCAAACCGAA TGATCCATGGA TGGCGAAGAATCGATGGCCCTCTCTACTGAAACTGATGGATGTGTATGGTATGGGGTG TTGAATTAATCG TCAGTTATTAGAGTTTTGTTAATTAGCTACTTAC TGAATGGAA TGGAATGTAATGAAATA TATTTTGG TGAGCTGCGAGAGTC TGTAAGTATT CAGGTGTGTGTG TGGTGTTC TTGATGATAATGATGAA TAAAACGAGAGGAATTCATCGA AAAAAA ]
[+] EMBL AU108727 [ GCGG CGCCGGA GG ACACGAGATG GCGCGGCCGTCGACGG TGTGCATGGAGAAGGGCGCCTGCTACAAGAAGCGGCTCACC TGCCCGGAAAAGTGC TTCAAGTCC TTCAGCTTCAAGGACAAGCACGGCGGCGGCGGC GGCGGCGGCGGCGGGTGCAGCTTCGA TTGCAACAAG TGCG AGGCCACCTGCTAATTAATCAAACCGAA TGATCCATGGA TGGCGAAGAATCGATGGCCCTCTCTACTGAAACTGATGGATGTGTATGGTATGGGGTG TTGAATTAATCG TCAGTTATTAGAGTTTTGTTAATTAGCTACTTAC TGAATGGAA TGGAATGTAATGAAATA TATTTTGG TGAGCTGCGAGAGTC TGTAAGTATT CAGGTGTGTGTG TGGTGTTC TTGATGATAATGATGAA TAAAACGAGAGGAATTCATCGA AAAA ]
[+] EMBL D42677 [ TGCAACAAG TGCG AGG CACCTGCTAATTAATCAAACCGAA TGATCCATGGA TGNCGAAGAATCGATNNCCCTCTCTACTGAAACTGATGGATGTGTATGGTATGGGGTG TTGAATTAATCG TCAGTTATTAGAGTTTTGTTAATTAGCTACTTAC TGAATGG A TGGAATGTAAT AAATA TATTTTNG TNAGCTGCGAGAGTC TGTAAGTATT CAGGNGTGTGTG TGGTNTNC TTNATGATAA ]
[+] EMBL AU108894 [ GCNACAAG TGCG AGGCCACCTGCTAATTAATCAAACCGAA TGATCCATGGA TGGCGAAGAATCGATGGCCCTCTCTACTGAAACTGATGGATGTGTATGGTATGGGGTG TTGAATTAATCG TCAGTTATTAGAGTTTTGTTAATTAGCTACTTAC TGAATGGAA TGGAATGTAATGAAATA TATTTTGG TGAGCTGCGAGAGTC TGTAAGTATT CAGGTGTGTGTG TGGTGTTC TTGATGATAATGATGAA TAAAACGAGAGGAATTCATCGATTCAAAAAAAA ]
[+] EMBL BI802093 [ ATCCATGGA TGGCGAAGAATCGATGGCCCTCTCTACTGAAACTGATGGATGTGTATGGTATGGGGTG TTGAATTAATCGCTCAGTTATTAGAGTTTTGTTAATTAGCTACTTAC TGAATGGAA TGGAATGTAATGGAATA TATTTTGG TGAGCTGCGAGAGTC TGTAAGTATT CAGGTGTGTGT TGGTGTTC TTGATGATAATGATGAA TAAAACGAGAGGAATTCATCGATTCTTTGACCGTAAAAAAAAAA]
consensusID : consensus_14204#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 413 fasta sequence
[TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCAACAACAAGAGATCATCGAAGCCCCAACAAGTCGCATGACATCCATGGCGGCGGCGGCGGCGGCGGGTGCAGCTTCGATTGCAACAAGTGCGAGGCCACCTGCTAATTAATCAAACCGAATGATCCATGGATGGCGAAGAATCGATGGCCCTCTCTACTGAAACTATGGATGGTATGGTATGGGGTGTTGAATTAATCGTCAGTANTAAGAGTTTTGTTAATTAGCTACTTACTGAATGGAATGGAATGTAATGAAATATATTTTGGTGAGCTGCGAGAGTCTGTAAGTATTCAGGTGTGTGTGTGGTGTTCTTGATGATAATGATGAATAAAACGAGAGTTATTCCC]
[-] EMBL CF306034 [TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCAACAACAAGAGATCATCGAAGCCCCAACAAGTCGCATGACATCCATGGCGGCGGCGGCGGCGGCGGGTGCAGCTTCGATTGCAACAAGTGCGAGGCCACCTGCTAATTAATCAAACCGAATGATCCATGGATGGCGAAGAATCGATGGCCCTCTCTACTGAAACTATGGATGGTATGGTATGGGGTGTTGAATTAATCGTCAGTANTAAGAGTTTTGTTAATTAGCTACTTACTGAATGGAATGGAATGTAATGAAATATATTTTGGTGAGCTGCGAGAGTCTGTAAGTATTCAGGTGTGTGTGTGGTGTTCTTGATGATAATGATGAATAAAACGAGAGTTATTCCC]
consensusID : consensus_14204#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 308 fasta sequence
[CGTCATCCTCGTNTCGGCCACCGCGTTCCACCACCACCACCACCACGNCGGAGGAGCCGAAGCTGGAGGAGGAGGAGGAGGGGGAGGCGNGTTCTTCGAGGTGCCGTGGTTCGGCCCGCCGGGGGGAGGNGTGTGGGGGGCGTGGGGAGCCGNCTACGCGAACGCCGTAGGACACGAGATGGCGCGGNCGTCGACGNTTGTGCATGGAGAAGGGCGCCTGCTACAAGAAGCGTNTCACCTNCCCGGAAAAGTGCTTCAAGTCCTTCAGCTTCAAGGACAAGCACGGNGNCGGCGGNGNCGACGNCGTN]
[+] EMBL OSC19761 [CGTCATCCTCGTNTCGGCCACCGCGTTCCACCACCACCACCACCACGNCGGAGGAGCCGAAGCTGGAGGAGGAGGAGGAGGGGGAGGCGNGTTCTTCGAGGTGCCGTGGTTCGGCCCGCCGGGGGGAGGNGTGTGGGGGGCGTGGGGAGCCGNCTACGCGAACGCCGTAGGACACGAGATGGCGCGGNCGTCGACGNTTGTGCATGGAGAAGGGCGCCTGCTACAAGAAGCGTNTCACCTNCCCGGAAAAGTGCTTCAAGTCCTTCAGCTTCAAGGACAAGCACGGNGNCGGCGGNGNCGACGNCGTN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14204#0 CTCTCTCTCTCTCTCCCCCATCTCCATGCCGCCATAAGTATCAGCAGCATCGCACCCGGA 60
consensus_14204#2 ------------------------------------------------------------
consensus_14204#1 ------------------------------------------------------------
consensus_14204#0 ATCGGAATCCCCAAACCCAACACCATCACCCCCCAACAACAAGAGATCATCGAAGCCCCA 120
consensus_14204#2 ------------------------------------------------------------
consensus_14204#1 ------------------------------------------------------------
consensus_14204#0 ACAAGTCGCATGACATCCATGGCGACGCCGCCGCCCAAGACCCTCCTCCTGCTCGTCCTC 180
consensus_14204#2 ------------------------------------------------------------
consensus_14204#1 ------------------TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 42
consensus_14204#0 GCGCTATCCGTCATCCTCGTCTCGGCCACCGCGTTCCACCACCACCACCACCACGACGGA 240
consensus_14204#2 --------CGTCATCCTCGTNTCGGCCACCGCGTTCCACCACCACCACCACCACGNCGGA 52
consensus_14204#1 TCTCTCTCTCTCTCTCTCTCTCCAACAACAAGAGATCATCGAAGCC-CCAACAAGTCGCA 101
** *** * * ** ** * ** *** ** * ** *
consensus_14204#0 GGA-GCCGAAGCTGGAGGAGGAGGAGGAGGGGGAGGC---GGGTTC------TTCGAGGT 290
consensus_14204#2 GGA-GCCGAAGCTGGAGGAGGAGGAGGAGGGGGAGGC---GNGTTC------TTCGAGGT 102
consensus_14204#1 TGACATCCATGGCGGCGGCGGCGGCGGCGGGTGCAGCTTCGATTGCAACAAGTGCGAGGC 161
** * * * ** ** ** ** ** *** * ** * * * * *****
consensus_14204#0 GCCGTGGT--TCGGCCCGCCGGGGGGAGGCGGG--TGG-GGGGCGTGGGGAGCCGGCTAC 345
consensus_14204#2 GCCGTGGT--TCGGCCCGCCGGGGGGAGGNGTG--TGG-GGGGCGTGGGGAGCCGNCTAC 157
consensus_14204#1 CACCTGCTAATTAATCAAACCGAATGATCCATGGATGGCGAAGAATCGATGGCCCTCTCT 221
* ** * * * * * ** * *** * * * * *** **
consensus_14204#0 GGCGGCGCCGGAG--GACACGAGATGGCGCG--------GCCGTCGACGGT--GTGCATG 393
consensus_14204#2 GCGAACGCCGTAG--GACACGAGATGGCGCG--------GNCGTCGACGNTT-GTGCATG 206
consensus_14204#1 ACTGAAACTATGGATGGTATGGTATGGGGTGTTGAATTAATCGTCAGTANTAAGAGTTTT 281
* * * * * **** * * **** * * * *
consensus_14204#0 GAGAA--GGGCGCCTGCTACAAGAAGCG--------GCTCACCTGCCCGGAAAAGTGCTT 443
consensus_14204#2 GAGAA--GGGCGCCTGCTACAAGAAGCG--------TNTCACCTNCCCGGAAAAGTGCTT 256
consensus_14204#1 GTTAATTAGCTACTTACTGAATGGAATGGAATGTAATGAAATATATTTTGGTGAGCTGCG 341
* ** * * * ** * * * * * * * **
consensus_14204#0 CAAGTCCTTCAGC-TTCAAGGACAAGCACGGCGGCGGCGGCGGCGGCGGCGGCGGGTGCA 502
consensus_14204#2 CAAGTCCTTCAGC-TTCAAGGACAAGCACGGNGNCGGCGGNGNCGACGNCGTN------- 308
consensus_14204#1 AGAGTCTGTAAGTATTCAGGTGTGTGTGTGGTGTTCTTGATGATAATGATGAATAAAACG 401
**** * ** **** * * ** * * * * *
consensus_14204#0 GCTTCGATTGCAACAAGTGCGAGGCCACCTGCTAATTAATCAAACCGAATGATCCATGGA 562
consensus_14204#2 ------------------------------------------------------------
consensus_14204#1 AGAGTTATTCCC------------------------------------------------ 413
consensus_14204#0 TGGCGAAGAATCGATGGCCCTCTCTACTGAAACTGATGGATGTGTATGGTATGGGGTGTT 622
consensus_14204#2 ------------------------------------------------------------
consensus_14204#1 ------------------------------------------------------------
consensus_14204#0 GAATTAATCGTCAGTTATTAGAGTTTTGTTAATTAGCTACTTACTGAATGGAATGGAATG 682
consensus_14204#2 ------------------------------------------------------------
consensus_14204#1 ------------------------------------------------------------
consensus_14204#0 TAATGAAATATATTTTGGTGAGCTGCGAGAGTCTGTAAGTATTCAGGTGTGTGTGTGGTG 742
consensus_14204#2 ------------------------------------------------------------
consensus_14204#1 ------------------------------------------------------------
consensus_14204#0 TTCTTGATGATAATGATGAATAAAACGAGAGGAATTCATCGATTAAAAAAAAATAAAAAA 802
consensus_14204#2 ------------------------------------------------------------
consensus_14204#1 ------------------------------------------------------------
consensus_14204#0 AAAA 806
consensus_14204#2 ----
consensus_14204#1 ----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||