These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14211#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 2097 fasta sequence [CACTCCCCTCTATCCACTGTTTCCGCCGCCGCCGCCGCCGCCGCCGCCGCCCGCCGCGCCGGCGTTCTCCCCCCGCCGACGAAGCACGGCGTGGAGTGTAGACGCAGCCTCCTCGCTCTCTCTCACGCCGGCGAGCAGGGTCTGGAGCCAGGAGCGACGCGGCGGCCGGGGCCGGGGCCTCCATCTCGGTTCGAACCGCACTGAAGGTCCCTCCCTGCATTAGGGCGCACAATGGCACTGACCCTTCTCAGAGGGATGCGAACGCCGGTTGTAGCTAGAAGGAATGCTGGCTTGTTCTTCACCACATTGCAGTCTCCGTTGTTGTCCCGCTTCACGATGAGAGCGGAGAGCGCGCGGGCCGCAGCGCCCAAGTCGATTCAGCTGGCGACCAAGGAGGCGGCGGAGCAGAAGGCGCAGGGCTTCGAGGCGGTCATCGGGATCGAGACCCATGTCCAGCTCTCGACGGTCACAAAGGCGTTCTGCTCGTGCCCGTACAGCTACGGGTCGCAGCCGAACAGCACCGTCTGCCCCACCTGCATGGGGCACCCCGGAACGCTGCCCGTTCTTAACGCAAAGGTTGTCGAATGCGCCGTGAGGTTGGGCCTCGCTCTCAATTGCGAGATCGCGATGACGTCCAAGTTTGATCGGAAGCAGTACTTCTACCCGGACCTGCCCAAGGGGTATCAGATTTCGCAGTTTGACATTCCCATTGCCAAGGAGGGTTACCTTGATTTGGATCTTCCGGTGGAGTTCGGCGGTGGGCATAGGAGATTTGGGGTCACAAGGGTGCATATGGAAGAAGATGCTGGCAAGCTGCTTCACTCTGAATCCGGGAGTTACTCTCAGGTTGACTTAAATAGGGCTGGCGTTCCTTTACTTGAAATTGTCTCAGAGCCAGATATGAGAACAGGGATAGAGGCTGCCGAGTATGGTGCTGAGCTACAGAGGCTTGTTAGGTACCTGGGCGTGAGTAATGGTAACATGCAGGAAGGTTCCCTTCGCTGTGATGTGAATGTTTCTGTTCGGCCAATTGGACAATCAAATTTTGGTACAAAGGTTGAAATAAAGAATATGAATTCATTTTCTGCAATAAGTAGGGCAATAGATTATGAGATCTCCCGGCAGATTCTTCTTCATAAAGAAGGTCAGGCTGATCAAATTGTACAAGAAACCCGGCTGTGGGATGAATCTTCTCAGAAAACTTTTACAATGCGAAAAAAGGAGGGACTTGCTGATTATAGATATTTTCCTGAGCCTGATCTTCCTGAAGTTGTTCTTACTAGTGAGTACATTGATGAAATTCAAAACTCAATGCCAGAGCTTCCTGAAGCAAAGCGTAGGCGCTTCGAGAATATGGGACTCAGCATGCAAGATGTTCTTTTCCTTGCTAATGACGATAATGTTGCTCGGTTCTTCGATTCTACCCTTGAGCACGGCGCGGATGCAAAGCTGGCTGCCAACTGGATCATGGGTGACATTGCTGCTTATTTGAAAAATGAAAAACTTTCCATTGATGAAATTAAATTAACACCTCTGGAGCTTTCTGAATTGATTGCATCTATAAGGAATGGAACTATCAGTGGGAAGATTGGAAAGGAGATTCTGATTGAACTCATTGCGAAAGGTGGAACTGTCAAGTCTGTGATAGAGGAGAAAGATTTGGTTCAGATAGCAGATCCTGCAGCAATTGAGGCAATGGTAGATCAAGTATTAGCTGATAATCCAAAGCAACTTGAGCAGTATCGGTCCGGGAAAACTAAATTGCAAGGATTTTTTGCTGGCCAGGTGATGAAAGCATCAAAGGGTAAAGCTAATCCTGTTTTGTTGAACAAAATCCTCGGGGAGAAATTGAAGGCCAATAGTTGAGGGGGTTTGTCGACAAACGGAGACTCATGTTGTAGTCCACGAGTGGACAATCGAACTAAACCCTGCAATTTGGGGTCTATTTTTCAATGATGAATTCTCTGTTAGCTCCAGTAGTTGTAAATGTTACTACTTTGTGGGTAGTTTATTTTTCTTCTTTTCTGAAAGAAAATTTTGTAAAAGCAGCATAATTTACATAATAAAAAG-ATGAATATTTATGCATCCAAAAAAAAA] [+] EMBL AK064895 [CACTCCCCTCTATCCACTGTTTCCGCCGCCGCCGCCGCCGCCGCCGCCGCCCGCCGCGCCGGCGTTCTCCCCCCGCCGACGAAGCACGGCGTGGAGTGTAGACGCAGCCTCCTCGCTCTCTCTCACGCCGGCGAGCAGGGTCTGGAGCCAGGAGCGACGCGGCGGCCGGGGCCGGGGCCTCCATCTCGGTTCGAACCGCACTGAAGGTCCCTCCCTGCATTAGGGCGCACAATGGCACTGACCCTTCTCAGAGGGATGCGAACGCCGGTTGTAGCTAGAAGGAATGCTGGCTTGTTCTTCACCACATTGCAGTCTCCGTTGTTGTCCCGCTTCACGATGAGAGCGGAGAGCGCGCGGGCCGCAGCGCCCAAGTCGATTCAGCTGGCGACCAAGGAGGCGGCGGAGCAGAAGGCGCAGGGCTTCGAGGCGGTCATCGGGATCGAGACCCATGTCCAGCTCTCGACGGTCACAAAGGCGTTCTGCTCGTGCCCGTACAGCTACGGGTCGCAGCCGAACAGCACCGTCTGCCCCACCTGCATGGGGCACCCCGGAACGCTGCCCGTTCTTAACGCAAAGGTTGTCGAATGCGCCGTGAGGTTGGGCCTCGCTCTCAATTGCGAGATCGCGATGACGTCCAAGTTTGATCGGAAGCAGTACTTCTACCCGGACCTGCCCAAGGGGTATCAGATTTCGCAGTTTGACATTCCCATTGCCAAGGAGGGTTACCTTGATTTGGATCTTCCGGTGGAGTTCGGCGGTGGGCATAGGAGATTTGGGGTCACAAGGGTGCATATGGAAGAAGATGCTGGCAAGCTGCTTCACTCTGAATCCGGGAGTTACTCTCAGGTTGACTTAAATAGGGCTGGCGTTCCTTTACTTGAAATTGTCTCAGAGCCAGATATGAGAACAGGGATAGAGGCTGCCGAGTATGGTGCTGAGCTACAGAGGCTTGTTAGGTACCTGGGCGTGAGTAATGGTAACATGCAGGAAGGTTCCCTTCGCTGTGATGTGAATGTTTCTGTTCGGCCAATTGGACAATCAAATTTTGGTACAAAGGTTGAAATAAAGAATATGAATTCATTTTCTGCAATAAGTAGGGCAATAGATTATGAGATCTCCCGGCAGATTCTTCTTCATAAAGAAGGTCAGGCTGATCAAATTGTACAAGAAACCCGGCTGTGGGATGAATCTTCTCAGAAAACTTTTACAATGCGAAAAAAGGAGGGACTTGCTGATTATAGATATTTTCCTGAGCCTGATCTTCCTGAAGTTGTTCTTACTAGTGAGTACATTGATGAAATTCAAAACTCAATGCCAGAGCTTCCTGAAGCAAAGCGTAGGCGCTTCGAGAATATGGGACTCAGCATGCAAGATGTTCTTTTCCTTGCTAATGACGATAATGTTGCTCGGTTCTTCGATTCTACCCTTGAGCACGGCGCGGATGCAAAGCTGGCTGCCAACTGGATCATGGGTGACATTGCTGCTTATTTGAAAAATGAAAAACTTTCCATTGATGAAATTAAATTAACACCTCTGGAGCTTTCTGAATTGATTGCATCTATAAGGAATGGAACTATCAGTGGGAAGATTGGAAAGGAGATTCTGATTGAACTCATTGCGAAAGGTGGAACTGTCAAGTCTGTGATAGAGGAGAAAGATTTGGTTCAGATAGCAGATCCTGCAGCAATTGAGGCAATGGTAGATCAAGTATTAGCTGATAATCCAAAGCAACTTGAGCAGTATCGGTCCGGGAAAACTAAATTGCAAGGATTTTTTGCTGGCCAGGTGATGAAAGCATCAAAGGGTAAAGCTAATCCTGTTTTGTTGAACAAAATCCTCGGGGAGAAATTGAAGGCCAATAGTTGAGGGGGTTTGTCGACAAACGGAGACTCATGTTGTAGTCCACGAGTGGACAATCGAACTAAACCCTGCAATTTGGGGTCTA ] [+] EMBL CB646236 [ ATCCACTGTTTCCGCCGCCGCCGCCGCCGCCGCCGCCGCCCGCCGCGCCGGCGTTCTCCCCCCGCCGACGAAGCACGGCGTGGAGTGTAGACGCAGCCTCCTCGCTCTCTCTCACGCCGGCGAGCAGGGTCTGGAGCCAGGAGCGACGCGGCGGCCGGGGCCGGGGCCTCCATCTCGGTTCGAACCGCACTGAAGGTCCCTCCCTGCATTAGGGCGCACAATGGCACTGACCCTTCTCAGAGGGATGCGAACGCCGGTTGTAGCTAGAAGGAATGCTGGCTTGTTCTTCACCACATTGCAGTCTCCGTTGTTGTCCCGCTTCACGATGAGAGCGGAGAGCGCGCGGGCCGCAGCGCCCAAGTCGATTCAGCTGGCGACCAAGGAGGCGGCGGAGCAGAAGGCGCAGGGCTTCGAGGCGGTCATCGGGATCGAGACCCATGTCCAGCTCTCGACGGTCACAAAGGCGTTCTGCTCGTGCCCGTACAGCTACGGGTCGCAGCCGAACAGCACCGTCTGCCCCACCTGCATGGGGCACCCCGGAACGCTGCCCGTTCTTAACGCAAAGGTTGTCGAATGCGCCGTGAGGTTGGGCCTCGCTCTCAATTGCGAGATCGCGATGACGTCCAAGTTTGATCGGAAGCAGTACTTCTACCCGGACCTGCCCAAGGGGTATCAGATTTCGCAGTTTGACATTCCCATTGCCAAGGAGGGTTACCTTGATTTGGATCTTCCGGTGGAGTTCGGCGGTGGGCATAGGAGATTTGGGGTCACAAGGG ] [+] EMBL CB651038 [ CCGCCGCCGCCGCCGCCGCCGCCGCCGCCCGCCGCGCCGGCGTTCTCCCCCCGCCGACGAAGCACGGCGTGGAGTGTAGACGCAGCCTCCTCGCTCTCTCTCACGCCGGCGAGCAGGGTCTGGAGCCAGGAGCGACGCGGCGGCCGGGGCCGGGGCCTCCATCTCGGTTCGAACCGCACTGAAGGTCCCTCCCTGCATTAGGGCGCACAATGGCACTGACCCTTCTCAGAGGGATGCGAACGCCGGTTGTAGCTAGAAGGAATGCTGGCTTGTTCTTCACCACATTGCAGTCTCCGTTGTTGTCCCGCTTCACGATGAGAGCGGAGAGCGCGCGGGCCGCAGCGCCCAAGTCGATTCAGCTGGCGACCAAGGAGGCGGCGGAGCAGAAGGCGCAGGGCTTCGAGGCGGTCATCGGGATCGAGACCCATGTCCAGCTCTCGACGGTCACAAAGGCGTTCTGCTCGTGCCCGTACAGCTACGGGTCGCAGCCGAACAGCACCGTCTGCCCCACCTGCATGGGGCACCCCGGAACGCTGCCCGTTCTTAACGCAAAGGTTGTCGAATGCGCCGTGAGGTTGGGCCTCGCTCTCAATTGCGAGATCGCGATGACGTCCAAGTTTGATCGGAAGCAGTACTTCTACCCGGACCTGCCCAAGGGGTATCAGATTTCGCAGTTTGACATTCCCATTGCCAAGGAGGGTTACCTTGATTTGGATCTTCCGGTGGAGTTCGGCGGTGGGCATAAGAGATTTGGGGTCACTAGGGTGCATATGGAAGAAGATGCTGGCAAGCTGCTTCACTCTGAATCCGG ] [+] EMBL CF324715 [ TCAGATTTCACAGTTTGACATTCCCATTGCCAAGGAGGGTTACCTTGATTTGGATCTTCCGGTGGAGTTCGGCGGTGGGCATAGGAGATTTGGGGTCACAAGGGTGCATATGGAAGAAGATGCTGGCAAGCTGCTTCACTCTGAATCCGGGAGTTACTCTCAGGTTGACTTAAATAGGGCTGGCGTTCCTTTACTTGAAATTGTCTCAGAGCCAGATATGAGAACAGGGATAGAGGCTGCCGAGTATGGTGCTGAACTACAGAGGCTTGTTAGGTACCTGGGCGTGAGTAACGGTAACATGCAGGAAGGTTCCCTTCGCTGTGATGTGAATGTTTCTGTTCGGCCAATTGGACAATCAAATTTTGGTACAAAGGTTGAAATAAAGAATATGAATTCATTTTCTGCAATAAGTAGGGCAATAGATTATGAGATCTCCCGGCAGATTCTTCTTCATAAAGAAGGTCAGGCTGATCAAATTGTACAAGAAACCCGCCTGTGGGATGAATCTTCTCAGAAAACTTTTACAATGCGAAAAAAGGAGGGACTTGCTGACTATAGATATTTTCC ] [-] EMBL CB646139 [ TTCAAAACTCAATGCCAGAGCTTCCTGAAGCAAAGCGTAGGCGCTTCGAGAATATGGGACTCAGCATGCAAGATGTTCTTTTCCTTGCTAATGACGATAATGTTGCTCGGTTCTTCGATTCTACCCTTGAGCACGGCGCGGATGCAAAGCTGGCTGCCAACTGGATCATGGGTGACATTGCTGCTTATTTGAAAAATGAAAAACTTTCCATTGATGAAATTAAATTAACACCTCTGGAGCTTTCTGAATTGATTGCATCTATAAGGAATGGAACTATCAGTGGGAAGATTGGAAAGGAGATTCTGATTGAACTCATTGCGAAAGGTGGAACTGTCAAGTCTGTGATAGAGGAGAAAGATTTGGTTCAGATAGCAGATCCTGCAGCAATTGAGGCAATGGTAGATCAAGTATTAGCTGATAATCCAAAGCAACTTGAGCAGTATCGGTCCGGGAAAACTAAATTGCAAGGATTTTTTGCTGGCCAGGTGATGAAAGCATCAAAGGGTAAAGCTAATCCTGTTTTGTTGAACAAAATCCTCGGGGAGAAATTGAAGGCCAATAGTTGAGGGGGTTTGTCGACAAACGGAGACTCATGTTGTAGTCCACGAGTGGACAATCGAACTAAACCCTGCAATTTGGGGTCTATTTTTCAATGATGAATTCTCTGTTAGCTCCAGTAGTTGTAAATGTTACTACTTTGTGGGTAGTTTATTTTTCTTCTTTTCTGAAAGAAAATTTTGTAAAAGCAGCATAATTTACATAATAAAAAGTATGAATATTTATGCAT ] [-] EMBL CB621544 [ CTCAATGCCAGAGCTTCCTGAAGCAAAGCGTAGGCGCTTCGAGAATATGGGACTCAGCATGCAAGATGTTCTTTTCCTTGCTAATGACGATAATGTTGCTCGGTTCTTCGATTCTACCCTTGAGCATGGCGCGGATGCAAAGCTGGCTGCCAACTGGATCATGGGTGACATTGCTGCTTATTTGAAAAATGAAAAACTTTCCATTGATGAAATTAAATTAACACCTCTGGAGCTTTCTGAATTGATTGCATCTATAAAGAATGGAACTATCAGTGGGAAGATTGGAAAGGAGATTCTGATTGAACTCATTGCGAAAGGTGGAACTGTCAAGTCTGTGATAGAGGAGAAAGATTTGGTTCAGATAGCAGATCCTGCAGCAATTGAGGCAATGGTAGATCAAGTATTAGCTGATAATCCAAAGCAACTTGAGCAGTATCGGTCCGGGAAAACTAAATTGCAAGGATTTTTTGCTGGCCAGGTGATGAAAGCATCAAAGGGTAAAGCTAATCCTGTTTTGTTGAACAAAATCCTCGGGGAGAAATTGAAGGCCAATAGTTGAGGGGGTTTGTCGACAAACGGAGACTCATGTTGTAGTCCACGAGTGGACAATCGAACTAAACCCTGCAATTTGGGGTCTATTTTTCAATGATGAATTCTCTGTTAGCTCCAGTAGTTGTAAATGATACTACTTTGTGGGTAGTTTATTTTTCTTCTTTTCTGAAAGAAAATTTTGTAAAAGCAGTATAATTTACATAATAAAAAG ATGAATATT ] [-] EMBL CB651039 [ TGCCAGAGCTTCCTGAAGCAAAGCGTAGGCGCTTCGAGAATATGGGACTCAGCATGCAAGATGTTCTTTTCCTTGCTAATGACGATAATGTTGCTCGGTTCTTCGATTCTACCCTTGAGCACGGCGCGGATGCAAAGCTGGCTGCCAACTGGATCATGGGTGACATTGCTGCTTATTTGAAAAATGAAAAACTTTCCATTGATGAAATTAAATTAACACCTCTGGAGCTTTCTGAATTGATTGCATCTATAAGGAATGGAACTATCAGTGGGAAGATTGGAAAGGAGATTCTGATTGAACTCATTGCGAAAGGTGGAACTGTCAAGTCTGTGATAGAGGAGAAAGATTTGGTTCAGATAGCAGATCCTGCAGCAATTGAGGCAATGGTAGATCAAGTATTAGCTGATAATCCAAAGCAACTTGAGCAGTATCGGTCCGGGAAAACTAAATTGCAAGGATTTTTTGCTGGCCAGGTGATGAAAGCATCAAAGGGTAAAGCTAATCCTGTTTTGTTGAACAAAATCCTCGGGGAGAAATTGAAGGCCAATAGTTGAGGGGGTTTGTCGACAAACGGAGACTCATGTTGTAGTCCACGAGTGGACAATCGAACTAAACCCTGCAATTTGGGGTCTATTTTTCAATGATGAATTCTCTGTTAGCTCCAGTAGTTGTAAATGTTACTACTTTGTGGGTAGTTTATTTTTCTTCTTTTCTGAAAGAAAATTTTGTAAAAGCAGCATAATTTACATAATAAAAAG ATGAATATT ] [+] EMBL OSC15991 [ attgTGAAAAGNAGATTCTNATTATNCTCATTGCGAAAGGTGGAACTGTCAAGTCTGTNATAGAGGAGAAAGATTTGGTTCAGATAGCAGATCCTGCAGCAATTGAGGCAATGGTAGATCAAGTATTANCTGATAATCCAAAGCAACTTGAGCAGTATCGGTCCGGGAAAACTAAATTNCAAGGATTTTTNNCTGGCCAGGTGATGAAAGCATCAAAGGGTAAAGCTAATCCTGTTTTGTTGAACAAAATCCTCGGGGNGAAATTGANGGCCAATAGTTGAGGGGGTTTGTCGGCAAACGGAGACTCATGTTGTAGTCCACGAGTGGNCAATCGAACTAAACCCng ] [+] EMBL OS1172A [ gGGAAAGGAGATTCTGATTGAACTCATTGCGAAAGGTGGAACTGTCAAGTCTGTGATAGAGGAGAAAGATTTGGTTCAGATAGCAGATCCTGCAGCAATTGAGGCAATGGTAGATCAAGTATTAGCTGATAATCCAAAGCAACTTGAGCAGTATCGGTCCGGGAAAACTAAATTGCAAGGATTTTTTGCTGGCCAGGTGATGAAAGCATCAAAGGGTAAAGCTAATCCTGTTTTGTTGAACAAAATCCTCGGGGAGAAATTGAAGGCCAATAGTTGAGGGGGTTTGTCGACAAACGGAGACTCATGTTGTAGTCCACGAGTGGACAATCGAACTAAACCCTGCAATTTGGGGTCTA TTTTCAATGATGAATTCTCTGTTAGCTCCAGTAGTTGTAAATGTTACTTCTTTGTGGGGAGTTTA TGTTC TCTTTTCTG NAGANANTTTTGTAANAGCGGCTTNNTTT CCTATTNAAnggtg ] [+] EMBL C98216 [ AGATTCTGATTGAACTCATTGCGAAAGGTGGAACTGTCAAGTCTGTGATAGAGGAGAAAGATTTGGTTCAGATAGCAGATCCTGCAGCAATTGAGGCAATGGTAGATCAAGTATTAGCTGATAATCCAAAGCAACTTGAGCAGTATCGGTCCGGGAAAACTAAATTGCAAGGATTTTTTGCTGGCCAGGTGATGAAAGCATCAAAGGGTAAAGCTAATCCTGTTTTGTTGAACAAAATCCTCGGGGAGAAATTGAAGGCCAATAGTTGAGGGGGTTTGTCGACAAACGGAGACTCATGTTGTAGTCCACGAGTGGACAATCGAACTAAACCCTGCAATTTGGGGTCTATTTTTCAATGATGAATTCTCTGTTAGCTCCAGTAGTTGTAAATGTTACTACTTTGTGGGTAGTTTATTTTTCTTCTTTTCTGAAAGAAAATTTTGTAAAAGCAGCATAATTTACATAATAAAAAG ATGAATATTTATGCATCCAAAAAAAAA] [+] EMBL AU076170 [ TGAGCAGTATCGGTCCGGGAAAACTAAATTGCAAGGATTTTTTGCTGGCCAGGTGATGAAAGCATCAAAGGGTAAAGCTAATCCTGTTTTGTTGAACAAAATCCTCGGGGAGAAATTGAAGGCCAATAGTTGAGGGGGTTTGTCGACAAACGGAGACTCATGTTGTAGTCCACGAGTGGACAATCGAACTAAACCCTGCAATTTGGGGTCTATTTTTCAATGATGAATTCTCTGTTAGCTCCAGTAGTTGTAAATGTTACTACTTTGTGGGTAGTTTATTTTTCTTCTTTTCTGAAAGAAAATTTTGT AAAGCAGCATAATTTACATAAT AAAAG ATGAATATTTATGCA ] [+] EMBL AU058178 [ TGAGCAGTATCGGTCCGGGAAAACTAAATTGCAAGGATTTTTTGCTGGCCAGGTGATGAAAGCATCAAAGGGTAAAGCTAATCCTGTTTTGTTGAACAAAATCCTCGGGGAGAAATTGAAGGCCAATAGTTGAGGGGGTTTGTCGACAAACGGAGACTCATGTTGTAGTCCACGAGTGGACAATCGAACTAAACCCTGCAATTTGGGGTCTATTTTTCAATGATGAATTCTCTGTTAGCTCCAGTAGTTGTAAATGTTACTACTTTGTGGGTAGTTTATTTTTCTTCTTTTCTG AAGAAAATTTTGT AAAGCAGCATAATTTACATAAT AAAAG ATGGATA TTATGCAnc ] [+] EMBL C74718 [ TGAGCAGTATCGGTCCGGGAAAACTAAATTGCAAGGATTTTTTGCTGGCCAGGTGATGAAAGCATCAAAGGGTAAAGCTAATCCTGTTTTGTTGAACAAAATCCTCGGGGAGAAATTGAAGGCCAATAGTTGAGGGGGTTTGTCGACAAACGGAGACTCATGTTGTAGTCCACGAGTGGACAATCGAACTAAACCCTGCAATTTGGGGTCTATTTTTCAATGATGAATTCTCTGTTAGCTCCAGTAGTTGTAAATGTTACTACTTTGTGGGTAGTTTATTTTTCTTCTTTTCTGAA ] consensusID : consensus_14211#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 774 fasta sequence [TCTCCTATCCTTTTTCCCACTCCCCTCTATCCACTGTTTCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCCGCCGCCCGCCGCCCGCCGCTCCGGCGTTCTCCCCCCGCCGACGAAGCACGGCGTGGAGTGTAGACGCAGCCTCCTCGCTCTCTCTCACGCCGGCGAGCAGGGTCTGGAGCCAGGAGCGACGCGGCGGCCGGGGCCGGGGCCTCCATCTCGGTTCGAACCGCACTGAAGGTAAATCAGGTCCCTCCCTGCATTAGGGCGCACAATGGCTCTGACCCTTCTCAGAGGGATGCGAACACCGGTTGTAGCTAGAAGGAATGCTGGCTTGTTCTTCACCACATTGCAGACTCCGTTGTTGTCCCGCTTCACGACGAGAGCGGAGAGCGCGCGGGCCGCGGCGCACAAGTCGATTCAGCTGGCGACCAAGGAGGCGGCGGAGCAGAAAACGCAGAGCTTCGAGGCGGTCATTGGGATCGAGACCCATGTCCAGCTCTCGACGGTCACAAAGGCGTTCTGCTCGTGCCCGTACAGCTACGGGTCGCAGCCGAACAGCACCGTCTGCCCCACCTGCATGGGGCACCCCGGGACGCTGCCCGTTCTTAACGCGAAGGTTGTCGAATGCGCCGTGAAGTTGGGCCTCGCTCTCAATTGCGAGATCGCAACGACGTCCAAGTTTGATCGGAAGCAGTACTTCTACCCGGACCTGCCCAAGGGGTATCAGATTTCACAGTTTGACATTCCCATTGCCAAGGAGGGTTACCT] [+] EMBL CB621543 [TCTCCTATCCTTTTTCCCACTCCCCTCTATCCACTGTTTCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCCGCCGCCCGCCGCCCGCCGCTCCGGCGTTCTCCCCCCGCCGACGAAGCACGGCGTGGAGTGTAGACGCAGCCTCCTCGCTCTCTCTCACGCCGGCGAGCAGGGTCTGGAGCCAGGAGCGACGCGGCGGCCGGGGCCGGGGCCTCCATCTCGGTTCGAACCGCACTGAAGGTAAATCAGGTCCCTCCCTGCATTAGGGCGCACAATGGCTCTGACCCTTCTCAGAGGGATGCGAACACCGGTTGTAGCTAGAAGGAATGCTGGCTTGTTCTTCACCACATTGCAGACTCCGTTGTTGTCCCGCTTCACGACGAGAGCGGAGAGCGCGCGGGCCGCGGCGCACAAGTCGATTCAGCTGGCGACCAAGGAGGCGGCGGAGCAGAAAACGCAGAGCTTCGAGGCGGTCATTGGGATCGAGACCCATGTCCAGCTCTCGACGGTCACAAAGGCGTTCTGCTCGTGCCCGTACAGCTACGGGTCGCAGCCGAACAGCACCGTCTGCCCCACCTGCATGGGGCACCCCGGGACGCTGCCCGTTCTTAACGCGAAGGTTGTCGAATGCGCCGTGAAGTTGGGCCTCGCTCTCAATTGCGAGATCGCAACGACGTCCAAGTTTGATCGGAAGCAGTACTTCTACCCGGACCTGCCCAAGGGGTATCAGATTTCACAGTTTGACATTCCCATTGCCAAGGAGGGTTACCT] consensusID : consensus_14211#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 713 fasta sequence [GCTGCCGAGTATGGTGCTGAGCTACAGAGGCTTGTTAGGTACCTGGGCGTGAGTAATGGTAACATGCAGGAAGGTTCCCTTCGCTGTGATGTGAATGTTTCTGTTCGGCCAATTGGACAATCAAATTTTGGTACAAAGGTTGAAATAAAGAATATGAATTCATTTTCTGCAATAAGTATGGCAATAGATTATGAGATCTCCCGGCAGATTCTTCTTCATAAAGAAGGTCAGGCTGATCAAATTGTACAAGAAACCCGGCTGTGGGATGAATCTTCTCAGAAAACTTTTACAATGCGAAAAAAGGAGATCAAGTATTAGCTGATAATCCAAAGCAACTTGAGCAGTATCGGTCCGGGAAAACTAAATTGCAAGGATTTTTTGCTGGCCAGGTGATGAAAGCATCAAAGGGTAAAGCTAATCCTGTTTTGTTGAACAAAATCCTCGGGGAGAAATTGAAGGCCAATAGTTGAGGGGGTTTGTCGACAAACGGAGACTCATGTTGTAGTCCACGAGTGGACAATCGAACTAACCCCTGCAATTTGGGGTCTATTTTTCAATGATGAATTCTCTGTTAGCTCCAGTAGTTGTAAATGTTACTACTTTGTGGGTAGTTTATTTTTCTTCTTTTCTGAAAGAAAATTTTGTAAAACGCAGCCATAAGTTTACAGTAATAAAAAGACTGAATATTTATGCATCCAAAAAAAAAAAAGGGA] [-] EMBL CB648119 [GCTGCCGAGTATGGTGCTGAGCTACAGAGGCTTGTTAGGTACCTGGGCGTGAGTAATGGTAACATGCAGGAAGGTTCCCTTCGCTGTGATGTGAATGTTTCTGTTCGGCCAATTGGACAATCAAATTTTGGTACAAAGGTTGAAATAAAGAATATGAATTCATTTTCTGCAATAAGTATGGCAATAGATTATGAGATCTCCCGGCAGATTCTTCTTCATAAAGAAGGTCAGGCTGATCAAATTGTACAAGAAACCCGGCTGTGGGATGAATCTTCTCAGAAAACTTTTACAATGCGAAAAAAGGAGATCAAGTATTAGCTGATAATCCAAAGCAACTTGAGCAGTATCGGTCCGGGAAAACTAAATTGCAAGGATTTTTTGCTGGCCAGGTGATGAAAGCATCAAAGGGTAAAGCTAATCCTGTTTTGTTGAACAAAATCCTCGGGGAGAAATTGAAGGCCAATAGTTGAGGGGGTTTGTCGACAAACGGAGACTCATGTTGTAGTCCACGAGTGGACAATCGAACTAACCCCTGCAATTTGGGGTCTATTTTTCAATGATGAATTCTCTGTTAGCTCCAGTAGTTGTAAATGTTACTACTTTGTGGGTAGTTTATTTTTCTTCTTTTCTGAAAGAAAATTTTGTAAAACGCAGCCATAAGTTTACAGTAATAAAAAGACTGAATATTTATGCATCCAAAAAAAAAAAAGGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14211#0 -----------------CACTCCCCTCTATCCACTGTTTCCGCCGCCGCCGCCGCCGCCG 43 consensus_14211#1 TCTCCTATCCTTTTTCCCACTCCCCTCTATCCACTGTTTCCGCCGCCGCCGCCGCCGCCG 60 consensus_14211#2 -----------------------------------------GCTGCCGAGTATGGTGCTG 19 ** **** * ** * consensus_14211#0 CCGCCGCC--------------------CGCCGCGCCGGCGTTCTCCCCCCGCCGACGAA 83 consensus_14211#1 CCGCCGCCGCCGCCCGCCGCCCGCCGCCCGCCGCTCCGGCGTTCTCCCCCCGCCGACGAA 120 consensus_14211#2 A-GCTACAGAGGCTTGTTA------GGTACCTGGGCGTGAGTAATGGTAACATGCAGGAA 72 ** * * * * * ** * * * *** consensus_14211#0 GCACGGCGTGGAGTGTAGACGCAGCCTCCTCGCTCTCTCTCACGCCGGCGAGCAGGGTCT 143 consensus_14211#1 GCACGGCGTGGAGTGTAGACGCAGCCTCCTCGCTCTCTCTCACGCCGGCGAGCAGGGTCT 180 consensus_14211#2 G-GTTCCCTTCGCTGT-GATGTGAATGTTTC-TGTTCGGCCAATTGGACAATCAAATTTT 129 * * * *** ** * ** ** ** * * * ** * * consensus_14211#0 GGAGCCAGGAGCGACGCGGCGGCCGGGGCCGGGGCCTCCATCTCGGTTCGAACCGCACTG 203 consensus_14211#1 GGAGCCAGGAGCGACGCGGCGGCCGGGGCCGGGGCCTCCATCTCGGTTCGAACCGCACTG 240 consensus_14211#2 GGTACAAAGGTTGA------AATAAAGAATATGAATTCATTTTCTGCAATAAGTATGGCA 183 ** * * * ** * * ** * ** * ** consensus_14211#0 AAGGT---------CCCTCCCTGCATTAGGGCGCACAATGGCACTGACCCTTCTCAGAGG 254 consensus_14211#1 AAGGTAAATCAGGTCCCTCCCTGCATTAGGGCGCACAATGGCTCTGACCCTTCTCAGAGG 300 consensus_14211#2 ATAGATTATGAGATCTCCCGGCAGATTCTTCTTCATAAAGAAGGTCAGGCTGATCAAATT 243 * * * * * *** ** ** * * * ** *** * consensus_14211#0 G-ATGCGAACGCCGGTTGTAGCTAGAAGGAATGCTGG---CTTGTTCTTCACCACATTGC 310 consensus_14211#1 G-ATGCGAACACCGGTTGTAGCTAGAAGGAATGCTGG---CTTGTTCTTCACCACATTGC 356 consensus_14211#2 GTACAAGAAACCCGGCTGTGGGATGAATCTTCTCAGAAAACTTTTACAATGCGAAAAAAG 303 * * *** **** *** * *** * * *** * * * * * consensus_14211#0 AGTCTCCGTTGTTGTCCCGCTTCACGATGAGAGCGGAGAGCGCGCGGGCCGCAGCGCCCA 370 consensus_14211#1 AGACTCCGTTGTTGTCCCGCTTCACGACGAGAGCGGAGAGCGCGCGGGCCGCGGCGCACA 416 consensus_14211#2 GAGATCAAGTATTAGCTGATAATCCAAAGCAACTTGAGCAGTATCGGTCCGGGAAAACTA 363 ** * ** * * * * * *** *** *** * consensus_14211#0 AGTCGATTCAGCTGGCGACCAAGGAGGCGGCGGA-GCAG-AAGGCGCAGGGCTTCGAGGC 428 consensus_14211#1 AGTCGATTCAGCTGGCGACCAAGGAGGCGGCGGA-GCAG-AAAACGCAGAGCTTCGAGGC 474 consensus_14211#2 AATTGCAAGGATTTTTTGCTGGCCAGGTGATGAAAGCATCAAAGGGTAAAGCT--AATCC 421 * * * * * *** * * * *** ** * * *** * * consensus_14211#0 GGTCATCGGGATCGAGACCCATGTCCAGCTCTCGACGGTCACAAAGGCGTTCTGCTCGTG 488 consensus_14211#1 GGTCATTGGGATCGAGACCCATGTCCAGCTCTCGACGGTCACAAAGGCGTTCTGCTCGTG 534 consensus_14211#2 TGTTTTGTTGAACAAAATCCTCGGGGAGAAATTGAAGGCCAATAGTTGAGGGGGTTTGTC 481 ** * ** * * * ** * ** * ** ** ** * * * ** consensus_14211#0 CCCGTACAGCTACGGGTCGCAGCCGAACAGCACCGTCTGCCCCACCTGCATGGGGCACCC 548 consensus_14211#1 CCCGTACAGCTACGGGTCGCAGCCGAACAGCACCGTCTGCCCCACCTGCATGGGGCACCC 594 consensus_14211#2 GACAAACGGAGACTCAT-GTTGTAGTCCACGAGTGGACAATCGAACTAACCCCTGCAATT 540 * ** * ** * * * * ** * * * * ** *** consensus_14211#0 CGGAACGCTGCCCGTTCTTAACGCAAAGGTTGTCGAATGCGCCGTGAGGTTGGGCCTCGC 608 consensus_14211#1 CGGGACGCTGCCCGTTCTTAACGCGAAGGTTGTCGAATGCGCCGTGAAGTTGGGCCTCGC 654 consensus_14211#2 TGGG-----GTCTATTTTTCAATGATGAATTCTCTGTTAGCTCCAGTAGTTGTAAATGTT 595 ** * * ** ** * ** ** * * * **** * consensus_14211#0 TCTCAATTGCGAG-ATCGCGATGACGTCCAAGTTTGATCGGAAGCAGTACT---TCTACC 664 consensus_14211#1 TCTCAATTGCGAG-ATCGCAACGACGTCCAAGTTTGATCGGAAGCAGTACT---TCTACC 710 consensus_14211#2 ACTACTTTGTGGGTAGTTTATTTTTCTTCTTTTCTGAAAGAAAATTTTGTAAAACGCAGC 655 ** *** * * * * * * *** * ** * * * consensus_14211#0 CGGACCTGCCCAAGGGGTATCAGATTTCGCAGTTTGACATTCCCATTGCCAAGGAGGGTT 724 consensus_14211#1 CGGACCTGCCCAAGGGGTATCAGATTTCACAGTTTGACATTCCCATTGCCAAGGAGGGTT 770 consensus_14211#2 CATAAGTTTACAGTAATAAAAAGACTGAATATTTATGCATCCAAAAAAAAAAAAGGGA-- 713 * * * ** * *** * * ** *** * * ** ** consensus_14211#0 ACCTTGATTTGGATCTTCCGGTGGAGTTCGGCGGTGGGCATAGGAGATTTGGGGTCACAA 784 consensus_14211#1 ACCT-------------------------------------------------------- 774 consensus_14211#2 ------------------------------------------------------------ consensus_14211#0 GGGTGCATATGGAAGAAGATGCTGGCAAGCTGCTTCACTCTGAATCCGGGAGTTACTCTC 844 consensus_14211#1 ------------------------------------------------------------ consensus_14211#2 ------------------------------------------------------------ consensus_14211#0 AGGTTGACTTAAATAGGGCTGGCGTTCCTTTACTTGAAATTGTCTCAGAGCCAGATATGA 904 consensus_14211#1 ------------------------------------------------------------ consensus_14211#2 ------------------------------------------------------------ consensus_14211#0 GAACAGGGATAGAGGCTGCCGAGTATGGTGCTGAGCTACAGAGGCTTGTTAGGTACCTGG 964 consensus_14211#1 ------------------------------------------------------------ consensus_14211#2 ------------------------------------------------------------ consensus_14211#0 GCGTGAGTAATGGTAACATGCAGGAAGGTTCCCTTCGCTGTGATGTGAATGTTTCTGTTC 1024 consensus_14211#1 ------------------------------------------------------------ consensus_14211#2 ------------------------------------------------------------ consensus_14211#0 GGCCAATTGGACAATCAAATTTTGGTACAAAGGTTGAAATAAAGAATATGAATTCATTTT 1084 consensus_14211#1 ------------------------------------------------------------ consensus_14211#2 ------------------------------------------------------------ consensus_14211#0 CTGCAATAAGTAGGGCAATAGATTATGAGATCTCCCGGCAGATTCTTCTTCATAAAGAAG 1144 consensus_14211#1 ------------------------------------------------------------ consensus_14211#2 ------------------------------------------------------------ consensus_14211#0 GTCAGGCTGATCAAATTGTACAAGAAACCCGGCTGTGGGATGAATCTTCTCAGAAAACTT 1204 consensus_14211#1 ------------------------------------------------------------ consensus_14211#2 ------------------------------------------------------------ consensus_14211#0 TTACAATGCGAAAAAAGGAGGGACTTGCTGATTATAGATATTTTCCTGAGCCTGATCTTC 1264 consensus_14211#1 ------------------------------------------------------------ consensus_14211#2 ------------------------------------------------------------ consensus_14211#0 CTGAAGTTGTTCTTACTAGTGAGTACATTGATGAAATTCAAAACTCAATGCCAGAGCTTC 1324 consensus_14211#1 ------------------------------------------------------------ consensus_14211#2 ------------------------------------------------------------ consensus_14211#0 CTGAAGCAAAGCGTAGGCGCTTCGAGAATATGGGACTCAGCATGCAAGATGTTCTTTTCC 1384 consensus_14211#1 ------------------------------------------------------------ consensus_14211#2 ------------------------------------------------------------ consensus_14211#0 TTGCTAATGACGATAATGTTGCTCGGTTCTTCGATTCTACCCTTGAGCACGGCGCGGATG 1444 consensus_14211#1 ------------------------------------------------------------ consensus_14211#2 ------------------------------------------------------------ consensus_14211#0 CAAAGCTGGCTGCCAACTGGATCATGGGTGACATTGCTGCTTATTTGAAAAATGAAAAAC 1504 consensus_14211#1 ------------------------------------------------------------ consensus_14211#2 ------------------------------------------------------------ consensus_14211#0 TTTCCATTGATGAAATTAAATTAACACCTCTGGAGCTTTCTGAATTGATTGCATCTATAA 1564 consensus_14211#1 ------------------------------------------------------------ consensus_14211#2 ------------------------------------------------------------ consensus_14211#0 GGAATGGAACTATCAGTGGGAAGATTGGAAAGGAGATTCTGATTGAACTCATTGCGAAAG 1624 consensus_14211#1 ------------------------------------------------------------ consensus_14211#2 ------------------------------------------------------------ consensus_14211#0 GTGGAACTGTCAAGTCTGTGATAGAGGAGAAAGATTTGGTTCAGATAGCAGATCCTGCAG 1684 consensus_14211#1 ------------------------------------------------------------ consensus_14211#2 ------------------------------------------------------------ consensus_14211#0 CAATTGAGGCAATGGTAGATCAAGTATTAGCTGATAATCCAAAGCAACTTGAGCAGTATC 1744 consensus_14211#1 ------------------------------------------------------------ consensus_14211#2 ------------------------------------------------------------ consensus_14211#0 GGTCCGGGAAAACTAAATTGCAAGGATTTTTTGCTGGCCAGGTGATGAAAGCATCAAAGG 1804 consensus_14211#1 ------------------------------------------------------------ consensus_14211#2 ------------------------------------------------------------ consensus_14211#0 GTAAAGCTAATCCTGTTTTGTTGAACAAAATCCTCGGGGAGAAATTGAAGGCCAATAGTT 1864 consensus_14211#1 ------------------------------------------------------------ consensus_14211#2 ------------------------------------------------------------ consensus_14211#0 GAGGGGGTTTGTCGACAAACGGAGACTCATGTTGTAGTCCACGAGTGGACAATCGAACTA 1924 consensus_14211#1 ------------------------------------------------------------ consensus_14211#2 ------------------------------------------------------------ consensus_14211#0 AACCCTGCAATTTGGGGTCTATTTTTCAATGATGAATTCTCTGTTAGCTCCAGTAGTTGT 1984 consensus_14211#1 ------------------------------------------------------------ consensus_14211#2 ------------------------------------------------------------ consensus_14211#0 AAATGTTACTACTTTGTGGGTAGTTTATTTTTCTTCTTTTCTGAAAGAAAATTTTGTAAA 2044 consensus_14211#1 ------------------------------------------------------------ consensus_14211#2 ------------------------------------------------------------ consensus_14211#0 AGCAGCATAATTTACATAATAAAAAGATGAATATTTATGCATCCAAAAAAAAA 2097 consensus_14211#1 ----------------------------------------------------- consensus_14211#2 ----------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||