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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14216#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1322 fasta sequence
[ATCTCACAATTTCTCCGCCTTCTCGTCCTCCTCGCCGAACCACCCCCATCGACCCACACAACCAGCGAACCGGAAGGATTTCACTCAGCTGAGTTTCCTGCCTCCATCCCCACGGCGATGGCGGAGGAGGCGAAGAATCTGGAGACGGCCCGGGCCGACCGCTCCGTGTGGCTCATGAAGTGCCCGACCGTCGTCTCCCGCGCCTGGCAGGAGGCCGCCACCGCCGCCGCCTCCTCCTCCTCCTCCTCGGACGCCGCCGCTGGCGCCAACTCCAACTCCAACGCGAACCCTAACCCCGTCGTCGCCAAGGTCATCGTCTCCCTCGACCCGCTCCGCTCCGAAGATCAGCAGCTCCAGTTCAAGATGGAGATGGCTCAAACAGGCAATGGCAATACACCAAAGAGTTACTCCTTGAACATGTTCAAGGATTTTGTGCCAATGTGTGTCTTTTCTGAATCCAACCAAGGGAAGCTTTCATGCGAAGGGAAAGTCGGGCACAAATTTGACATGGAACCGCACAGCGATGAAAATTGATGGTAGGAGTTTTTATGATATTATATATGCCATATTGATCTGCTTCATATGGTAGAAGTATTTATTGTACAGATTCACCTTTTGCCCTTGTCTGTTTTTAGGTACTTGCGAATGACAATGGAATGAGCATGAGGCCGTTGCCTGGCTTGGTGGGTCTGATGTCTTCTGGTCCAAAACAGAAGGAGAAGAAGCCACTACCAGTAAAACCATCAGACATGAAAAGAACGAGAAGGGATCGCAGGGAACTGGAAAATATCTTA-TTCAAGCTTTTTGAGAGGCAGCCGAATTGGTCTCTTAAGAATCTCATGCAAGAAACTGATCAACCAGAGCAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTACAACAAAAGGGGTCCAAATCAAGGGACGCATGAACTTAAGCCTGAATACAAGAAATCTACAGAGGACGCTGATGCTACTGCTACTTAGAAGTCTTATGCTTCGGTCTACTAGATAGGAGTCCTCGTCCAGTGTGGACTCCAATCCGTTACTTGCTGCGTTCAAGGAAATCTTGGATACTTCGTTTATAGTTTGTTTCTTGAGAAACATATTTTGTACGCATCAAGCGATACATCTTTTGGTGTTACTGGCGGCCATATCTTAGACCCAGATTTCGGGGACTCGATATATTCGTGTCCATCAGAGTTTAGAAACAAGGATGTTGAAATTTGTGTGTATAATGTATTTTAGCTCTTCTAGGCAAACTAACATGATGATTTTCATGATCATTAAACACCTTGACCTACTCTTCCCTGCAAAAAA]
[+] EMBL AK060471 [ATCTCACAATTTCTCCGCCTTCTCGTCCTCCTCGCCGAACCACCCCCATCGACCCACACAACCAGCGAACCGGAAGGATTTCACTCAGCTGAGTTTCCTGCCTCCATCCCCACGGCGATGGCGGAGGAGGCGAAGAATCTGGAGACGGCCCGGGCCGACCGCTCCGTGTGGCTCATGAAGTGCCCGACCGTCGTCTCCCGCGCCTGGCAGGAGGCCGCCACCGCCGCCGCCTCCTCCTCCTCCTCCTCGGACGCCGCCGCTGGCGCCAACTCCAACTCCAACGCGAACCCTAACCCCGTCGTCGCCAAGGTCATCGTCTCCCTCGACCCGCTCCGCTCCGAAGATCAGCAGCTCCAGTTCAAGATGGAGATGGCTCAAACAGGCAATGGCAATACACCAAAGAGTTACTCCTTGAACATGTTCAAGGATTTTGTGCCAATGTGTGTCTTTTCTGAATCCAACCAAGGGAAGCTTTCATGCGAAGGGAAAGTCGGGCACAAATTTGACATGGAACCGCACAGCGATGAAAATTGATGGTAGGAGTTTTTATGATATTATATATGCCATATTGATCTGCTTCATATGGTAGAAGTATTTATTGTACAGATTCACCTTTTGCCCTTGTCTGTTTTTAGGTACTTGCGAATGACAATGGAATGAGCATGAGGCCGTTGCCTGGCTTGGTGGGTCTGATGTCTTCTGGTCCAAAACAGAAGGAGAAGAAGCCACTACCAGTAAAACCATCAGACATGAAAAGAACGAGAAGGGATCGCAGGGAACTGGAAAATATCTTA TTCAAGCTTTTTGAGAGGCAGCCGAATTGGTCTCTTAAGAATCTCATGCAAGAAACTGATCAACCAGAGCAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTACAACAAAAGGGGTCCAAATCAAGGGACGCATGAACTTAAGCCTGAATACAAGAAATCTACAGAGGACGCTGATGCTACTGCTACTTAGAAGTCTTATGCTTCGGTCTACTAGATAGGAGTCCTCGTCCAGTGTGGACTCCAATCCGTTACTTGCTGCGTTCAAGGAAATCTTGGATACTTCGTTTATAGTTTGTTTCTTGAGAAACATATTTTGTACGCATCAAGCGATACATCTTTTGGTGTTACTGGCGGCCATATCTTAGACCCAGATTTCGGGGACTCGATATATTCGTGTCCATCAGAGTTTAGAAACAAGGATGTTGAAATTTGTGTGTATAATGTATTTTAGCTCTTCTAGGCAAACTAACATGATGATTTTCATGATCATTAAACACCTTGACCTAC ]
[+] EMBL AU068734 [ anGAACGAGAAGGGATCGCAGGGAACTGGAAAATATCTTATTTCAAGCTTTTTGAGAGGCAGCCGAATTGGTCTCTTAAGAATCTCATGCAAGAAACTGATCAACCAGAGCAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTACAACAAAAGGGGTCCAAATCAAGGGACGCATGAACTTAAGCCTGAATACAAGAAATCTACAGAGGACGCTGATGCTACTGCTACTTAGAAGTCTTATGCTTCGGTCTACTAGATAGGAGTCCTCGTCCAGTGTGGACTCCAATCCGTTACTTGCTGCGTTCAAGGAAATCTTGGATACTTCGTTTATAGTTTGTTTCTTGAGAAACATATTTTGTACGCATCAAGCGATACATCTTTTGGTGTTACTGGCGGCCATATCTTAGACCCAGATTTCGGGGACTCGATATATTCGTGTCCATCAGAGTTTAGAAACAAGGATGTTGAAATTTGTGTGTATAATGTATTTTAGCTCTTCTAGGCAAACTAACATGATGATTTTCATGATCATTAAACACCTTGACCTACTCTTCCCTGCAAAAAA]
consensusID : consensus_14216#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1275 fasta sequence
[CCAATCTCACAATTTCTCCGCCTTCTCGTCCTCCTCGCCGAACCACCCCCATCGACCCACACAACCAGCGAACCGGAAGGATTTCACTCAGCTGAGTTTCCTGCCTCCATCCCCACGGCGATGGCGGAGGAGGCGAAGAATCTGGAGACGGCCCGGGCCGAC-CGCTCCGTGTGGCTCATGAAGTGCCCGACCGTCGTCTCCCGCGCCTGGCAGGAGGCCGCCACCGCCGCCGCCTCCTCCTCCTCCTCCTCGGACGCCGCCGCTGGCGCCAACTCCAACTCCAACGCGAACCCTAACCCCGTCGTCGCCAAGGTCATCGTCTCCCTCGACCCGCTCCGCTCCGAAGATCAGCAGCTCCAGTTCAAGATGGAGATGGCTCAAACAGGCAATGGCAATACACCAAAGAGTTACTCCTTGAACATGTTCAAGGATTTTGTGCCAATGTGTGTC-TTTCTGAATCCAACCAAGGGAAGCTTTCATGCGAAGGGAAAGTCGGGCACAAATTTGACATGGAACCGCACAGCGATAATCTTGTGAACTATGGGAAGTTATGTCGTGAGAGGACTCAAAAATCTATGATTAAAAATAGAAAATTGATGGTACTTGCGAATGACAATGGAATGAGCATGAGGCCGTTGCCTGGCTTGGTGGGTCTGATGTCTTCTGGTCCAAAACAGAAGGAGAAGAAGCCACTACCAGTAAAACCATCAGACATGAAAAGAACGAGAAGGGATCGCAGGG-AACTGGAAAATATC-TTATTCAAGCTTTTTGAGAGGCAGCCGAATTGGTCTCTTAAGAATCTCATGCAAGAAACTGATCAACCAGAGCAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTACAACAAAAGGGGTCCAAATCAAGGGACGCATGAACTTAAGCCTGAATACAAGAAATCTACAGAGGACGCTGATGCTACTGCTACTTAGAAGTCTTATGCTTCGGTCTACTAGATAGGAGTCCTCGTCCAGTGTGGACTCCAATCCGTTACTTGCTGCGTTCAAGGAAATCTTGGATACTTCGTTTATAGTTTGTTTCTTGAGAAACATATTTTGTACGCATCAAGCGATACATCTTTTGGTGTTACTGGCGGCCATATCTTAGACCCAGATTTCGGGGACTCGATATATTCGTGTCCATCAGAGTTTAGAAACAAGGATGTTGAAATTTGTGTGTATAATGTATTTTAGCTCTTCTAGGCAAACTAACATGATGATTTTCATGATCATTAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK103491 [CCAATCTCACAATTTCTCCGCCTTCTCGTCCTCCTCGCCGAACCACCCCCATCGACCCACACAACCAGCGAACCGGAAGGATTTCACTCAGCTGAGTTTCCTGCCTCCATCCCCACGGCGATGGCGGAGGAGGCGAAGAATCTGGAGACGGCCCGGGCCGAC CGCTCCGTGTGGCTCATGAAGTGCCCGACCGTCGTCTCCCGCGCCTGGCAGGAGGCCGCCACCGCCGCCGCCTCCTCCTCCTCCTCCTCGGACGCCGCCGCTGGCGCCAACTCCAACTCCAACGCGAACCCTAACCCCGTCGTCGCCAAGGTCATCGTCTCCCTCGACCCGCTCCGCTCCGAAGATCAGCAGCTCCAGTTCAAGATGGAGATGGCTCAAACAGGCAATGGCAATACACCAAAGAGTTACTCCTTGAACATGTTCAAGGATTTTGTGCCAATGTGTGTC TTTCTGAATCCAACCAAGGGAAGCTTTCATGCGAAGGGAAAGTCGGGCACAAATTTGACATGGAACCGCACAGCGATAATCTTGTGAACTATGGGAAGTTATGTCGTGAGAGGACTCAAAAATCTATGATTAAAAATAGAAAATTGATGGTACTTGCGAATGACAATGGAATGAGCATGAGGCCGTTGCCTGGCTTGGTGGGTCTGATGTCTTCTGGTCCAAAACAGAAGGAGAAGAAGCCACTACCAGTAAAACCATCAGACATGAAAAGAACGAGAAGGGATCGCAGGG AACTGGAAAATATC TTATTCAAGCTTTTTGAGAGGCAGCCGAATTGGTCTCTTAAGAATCTCATGCAAGAAACTGATCAACCAGAGCAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTACAACAAAAGGGGTCCAAATCAAGGGACGCATGAACTTAAGCCTGAATACAAGAAATCTACAGAGGACGCTGATGCTACTGCTACTTAGAAGTCTTATGCTTCGGTCTACTAGATAGGAGTCCTCGTCCAGTGTGGACTCCAATCCGTTACTTGCTGCGTTCAAGGAAATCTTGGATACTTCGTTTATAGTTTGTTTCTTGAGAAACATATTTTGTACGCATCAAGCGATACATCTTTTGGTGTTACTGGCGGCCATATCTTAGACCCAGATTTCGGGGACTCGATATATTCGTGTCCATCAGAGTTTAGAAACAAGGATGTTGAAATTTGTGTGTATAATGTATTTTAGCTCTTCTAGGCAAACTAACATGATGATTTTCATGATCATTAAA ]
[+] EMBL AU068733 [ TCGTCCTCCTCGCCGAACCACCCCCATCGACCCACACAACCAGCGAACCGGAAGGATTTCACTCAGCTGAGTTTCCTGCCTCCATCCCCACGGCGATGGCGGAGGAGGCGAAGAATCTGGAGACGGCCCGGGCCGAC CGCTCCGTGTGGCTCATGAAGTGCCCGACCGTCGTCTCCCGCGCCTGGCAGGAGGCCGCCACCGCCGCCGCCTCCTCCTCCTCCTCCTCGGACGCCGCCGCTGG GCCAACTCCAACTCCAACGCGAACCCTAACCCCGTCGTCGCCAAGGTCATCGTCTCCCTCGACCCGCTCCGCTCCGAAGATCAGCAGCTCCAGTTCAAGATGGAGATGGCTCAAACAGGCAATGGCAATACACCAAA ]
[+] EMBL CB683821 [ CGTCCTCCTCGCCGAACCACCCCCATCGACCCACACAACCAGCGAACCGGAAGGATTTCACTCAGCTGAGTTTCCTGCCTCCATCCCCACGGCGATGGCGGAGGAGGCGAAGAATCTGGAGACGGCCCGGGCCGAC CGCTCCGTGTGGCTCATGAAGTGCCCGACCGTCGTCTCCCGCGCCTGGCAGGAGGCCGCCACCGCCGCCGCCTCCTCCTCCTCCTCCTCGGACGCCGCCGCTGGCGCCAACTCCAACTCCAACGCGAACCCTAACCCCGTCGTCGCCAAGGTCATCGTCTCCCTCGACCCGCTCCGCTCCGAAGATCAGCAGCTCCAGTTCAAGATGGAGATGGCTCAAACAGGCAATGGCAATACACCAAAGAGTTACTCCTTGAACATGTTCAAGGATTTTGTGCCAATGTGTGTCTTTTCTGAATCCAACCAAGGGAAGCTTTCATGCGAAGGGAAAGTCGGGCACAAATTTGACATGGAACCGCACAGCGATAATCTTGTGAACTATGGGAAGTTATGTCGTGAGAGGACTCAAAAATCTATGATTAAAAATAGAAAATTGATGGTACTTGCGAATGACAATGGAATGAGCATGAGGCCGTTGCCTGGCTTGGTGGGTCTGATGTCTTCTGGTCCAAAACAGAAGGAGAAGAAGCCACTACCAGTAAAACCATCAGACATGAAAAGAACGAGAAGGGATCGCAGGGAAACTGG AAATATC TTATTCAAGCTTTTTGAGAGGCAGCCGAATTGGTCTCTTAAGAATCTCATGGCAGA ]
[+] EMBL AU161442 [ CGTCCTCCTCGCCGAACCACCCCCATCGACCCACACAACCAGCGAACCGGAAGGATTTCACTCAGCTGAGTTTCCTGCCTCCATCCCCACGGCGATGGCGGAGGAGGCGAAGAATCTGGAGACGGCCCGGGCCGAC CGCTCCGTGTGGCTCATGAAGTGCCCGACCGTCGTCTCCCGCGCCTGGCAGGAGGCCGCCACCGCCGCCGCCTCCTCCTCCTCCTCCTCGGACGCCGCCGCTGGCGCCAACTCCAACTCCAACGCGAACCCTAACCCCGTCGTCGCCAAG ]
[+] EMBL C97730 [ cnTCCTCCTCGCCGAACCACCCCCATCGACCCACACAACCAGCGAACCGGAAGAGTTTCACTCAGCTGAGTTTCCNGCCTCCATNCCCACGGCGATGGCGGAGGAGGCGAAGAATCTGGAGACGGCCCGGGC ACNCGCTCCGTGTGGCTCATGAAGTGCCCGACCGTCGTCTCCCGCGCCTGGCAGGAGG CGCCACCNNCGCCGNCTCCTCCTCCTGCTCCTCGGACntc ]
[+] EMBL AU161443 [ TATGATTAAAAATAG AAATTGATGG ACTTGCGAATG CCATGNAATGAGCATGAGCCCGTTGCCTGGNTTGGTGGGTCTGATGTCTTCTGGTCCAAAA AAGGAGAAGAAGCCACTACCAGTAAAACCATCAGACATGAAAAGANCGAGAAGGGATCGCAGGG AACTGGAAAATATCTTTATTCAAGCTTTTTGAGAGGCAGCCGAATTGGTCTCTTAAGAATCTCATGCAAGAAACTGATCAACCAGAGCAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTACAACAAAAGGGGTCCAAATCAAGGGACGCATGAACTTAAGCCTGAATNCAAGAAATCTACAGAGGACGCTGATGCTACTGCTACTTAGAAGTCTTATGCTTCGGTCTACTAGATAGGAGTCCTCGTCCAGTGTGGACTCCAATCCGTTACTTGCTGCGTTCAAGGAAATCTTGGATACTTCGTTTATAGTTTGTTTCTTGAGAAACATATTTTGTACGCATCAAGCGATACATCTTTTGGTGTTACTGGCGGCCATATCTTAGACCCAGATTTCGGGGACTCGATATATTCGTGTCCATCAGAGTTTAGAAACAAGGATGTTGAAATTTGTGTGTATAATGTATTTTAGCTCTTCTAGGCAAACTAACATGATGATTTTCATGATCATTAAAAAA ]
[+] EMBL AU031703 [ GTGTTTCTACAACAAAAGGGGTCCAAATCAAGGGACGCATGAACTTAAGCCTGAATACAAGAAATCTACAGAGGACGCTGATGCTACTGCTACTTAGAAGTCTTATGCTTCGGTCTACTAGATAGGAGTCCTCGTCCAGTGTGGACTCCAATCCGTTACTTGCTGCGTTCAAGGAAATCTTGGATACTTCGTTTATAGTTTGTTTCTTGAGAAACATATTTTGTACGCATCAAGCGATACATCTTTTGGTGTTACTGGCGGCCATATCTTAGACCCAGATTTCGGGGACTCGATATATTCGTGTCCATCAGAGTTTAGAAACAAGGATGTTGAAATTTGTGTGTATAATGTATTTTAGCTCTTCTAGGCAAACTAACATGATGATTTTCATGATCATTAAACAAAAAAAAAAAAAAAAA]
consensusID : consensus_14216#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 842 fasta sequence
[GCCAATGTGTGTCTTTTCTGAATCCAACCAAGGGAAGCTTTCATGCGAAGGGAAAGTCGGGCACAAATTTGACATGGAACCGCACAGCGATAATCTTGTGAACTATGGGAAGTTATGTCGTGAGAGGACTCAAAAATCTATGATTAAAAATAGAAAATTGATGGTACTTGCGAATGACAATGGAATGAGCATGAGGCCGTTGCCTGGCTTGGTGGGTCTGATGTCTTCTGGTCCAAAACAGAAGGAGAAGAAGCCACTACCAGTAAAACCATCAGACATGAAAAGAACGAGAAGGGATCGCAGGGAACTGGAAAATATCTTATTCAAGCTTTTTGAGAGGCAGCCGAATTGGTCTCTTAAGAATCTCATGCAAGAAACTGATCAACCAGAGCAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTAC-AACA-AAAGGGGTCCAAATCAAGGGACGCATGAACTTAAGCCTGAATACAAGAAATCTACAGAGGACGCTGATGCTACTGCTACTTAGAAGTCTTATGCTTCGGTCTACTAGATAGGAGTCCTCGTCCAGTGTGGACT-CCAATCCGTTACTTGCTGCGTTCAAGGAAATCTT-GGATACTTCGTTTATAGTTTGTTTCTTGAGAAACATATTTTGTACGCATCAAGCGATACATCTTTT-GGTGTTACT-GGCGGCCATATCTTA-GACCCAGATTTCGGGGACTCGATATATTCGTGTCCATCAGAGTTTA-GAAACAAGGATG-TTGAAATTTGTGTGTATAATGTATTTTAGCTCTTCTAGGCAAACT-AACATGATGATTTTCATGATCATTAAACACCTTGACCTAAAAAAAAGA]
[-] EMBL CB683377 [GCCAATGTGTGTCTTTTCTGAATCCAACCAAGGGAAGCTTTCATGCGAAGGGAAAGTCGGGCACAAATTTGACATGGAACCGCACAGCGATAATCTTGTGAACTATGGGAAGTTATGTCGTGAGAGGACTCAAAAATCTATGATTAAAAATAGAAAATTGATGGTACTTGCGAATGACAATGGAATGAGCATGAGGCCGTTGCCTGGCTTGGTGGGTCTGATGTCTTCTGGTCCAAAACAGAAGGAGAAGAAGCCACTACCAGTAAAACCATCAGACATGAAAAGAACGAGAAGGGATCGCAGGGAACTGGAAAATATCTTATTCAAGCTTTTTGAGAGGCAGCCGAATTGGTCTCTTAAGAATCTCATGCAAGAAACTGATCAACCAGAGCAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTAC AACA AAAGGGGTCCAAATCAAGGGACGCATGAACTTAAGCCTGAATACAAGAAATCTACAGAGGACGCTGATGCTACTGCTACTTAGAAGTCTTATGCTTCGGTCTACTAGATAGGAGTCCTCGTCCAGTGTGGACT CCAATCCGTTACTTGCTGCGTTCAAGGAAATCTT GGATACTTCGTTTATAGTTTGTTTCTTGAGAAACATATTTTGTACGCATCAAGCGATACATCTTTT GGTGTTACT GGCGGCCATATCTTA GACCCAGATTTCGGGGACTCGATATATTCGTGTCCATCAGAGTTTA GAAACAAGGATG TTGAAATTTGTGTGTATAATGTATTTTAGCTCTTCTAGGCAAACT AACATGATGATTTTCATGATCATTAAACACCTTGACCTAAAAAAAAGA]
[+] EMBL BI807432 [ TTATTCAAGCTTTTTGAGA GCA CCGAATTGGTCTCTTAAGAATCTCATGCAAGAAACTGATCAACCAGA CAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTACAAACACAAAGGGGTCC AATCAAGGGACGCATGAACTTAAGCCTGAATACAAGAAATCTACAGAGGACGCTGATGCTACTGCTACTTAGAAGTCTTATGCTTCGGTCTACTAGATAGGAGTCCTCGTCCAGTGTGGACT CCAATCCGTTACTTGCTGCGTTCAAGGAAATCTT GGATACTTCGTTTATAGTTTGTTTCTTGAGAAACATATTTTGTACGCATCAAGCGATACATCTTTT GGTGTTACT GGCGGCCATATCTTA GACCCAGATTTCGGGGACTCGATATATTCGTGTCCATCAGAGTTTA GAAACAAGGATG TTGAAATTTGTGTGTATAATGTATTTTAGCTCTTCTAGGCAAAaa aaa ]
[+] EMBL C28979 [ AAGCTTTTTGAGAGGCAGCCGAATTGGTCTCTTAAGAATCTCATGCAAGAAACTGATCAACCAGAGCAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTAC AACA AAAGGGGTCCAAATCAAGGGACGCATGAACTTAAGCCTGAATACAAGANATCTACAGAGGACGCTGATGCTACTGCTACTTAGAAGTCTTATGCTTCGGTCTACTAGATAGGNGTCCTCGTCCAGTGTGGACTNCCAATCCGTTACTTGCTGCGTTCAAGGAAATCTTGGGATACTTCGTTTATAGTTTGTTTCTTGAGANACATATTTTGTACGCATCAAGCGATACATCTTTTNGGTGTTACTNGGCGGCCATATCTTAGGACCCAGATTTCGGGGACTCGATATATTCGTGTCCATCAGAGTTTAGGAACCAAGGGTGNTTGAAATTTGTG ]
[+] EMBL AU182044 [ CATGCAAGAAACTGATCAACCAGAGCAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTAC AACA AAAGGGGTCCAAATCAAGGGACGCATGAACTTAAGCCTGAATACAAGAAATCTACAGAGGACGCTGATGCTACTGCTACTTAGAAGTCTTATGCTTCGGTCTACTAGATAGGAGTCCTCGTCCAGTGTGGACT CCAATCCGTTACTTGCTGCGTTCAAGGAAATCTT GGATACTTCGTTTATAGTTTGTTTCTTGAGAAACATATTTTGTACGCATCAAGCGATACATCTTTT GGTGTTACT GGCGGCCATATCTTA GACCCAGATTTCGGGGACTCGATATATTCGTGTCCATCAGAGTTTA GAAACAAGGATG TTGAAATTTGTGTGTATAATGTATTTTAGCTCTTCTAGGCAAAaa aa ]
[+] EMBL OSR06551A [ GTGTTTCTAC AACA AAAGGGGTCCAAATCAAGGGACGCATGAACTTAAGCCTGAATACAAGAAATCTACAGAGGACGCTGATGCTACTGCTACTTAGAAGTCTTATGCTTCGGTCTACTAGATAGGAGTCCTCGTCCAGTGTGGACT CCAATCCGTTACTTGCTGCGTTCAAGGAAATCTT GGATACTTCGTTTATAGTTTGTTTCTTGAGAAACATATTTTGTACGCATCAAGCGATACATCTTTT GGTGTTACT GGCGGCCATATCTTA GACCCAGATTTCGGGGACTCGATATATTCGTGTCCATCAGAGTTTA GAAACAAGGATG TTGAAATTTGTGTGTATAATGTATTTTAGCTCTTCTAGGCAAACTAAACATGAT ]
consensusID : consensus_14216#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 437 fasta sequence
[AAGGAGATATTGAATGATCTGTGTTTNTACAACAAAAGGGGTCCAAATCAAGGGACGCATGAACTTAAGCCTGAATACAAGAAATCTACAGAGGACGCTGATGCTNCTGCTACTTAGAAGTCTTATGCTTCGGTCTACTAGATAGGAGTCCTCGTCCAGTGTGGACTCCAATCCCGTTACNTGCTGCGTTCAAGGAAATCTTGGATACTTCGTTTATAGTTTGTTTCTTGAGAAACATATTTTGTACGCCTCNANCCGATACATCTTTTGGTGTTACTGGCGGCCCATATTTTAGACCCCAGATTTCGGGGNCTCGATATATTNNGTGTCCCTCAGAGTTTANAAACCAAGGATGTTGAAATTTGNGGGNAAAAATGNNTTTTAGCTNTTNCTAGGCCAAACTAACCATNATNATTTTCCATNNATCCATAAAAAAA]
[+] EMBL AU181991 [AAGGAGATATTGAATGATCTGTGTTTNTACAACAAAAGGGGTCCAAATCAAGGGACGCATGAACTTAAGCCTGAATACAAGAAATCTACAGAGGACGCTGATGCTNCTGCTACTTAGAAGTCTTATGCTTCGGTCTACTAGATAGGAGTCCTCGTCCAGTGTGGACTCCAATCCCGTTACNTGCTGCGTTCAAGGAAATCTTGGATACTTCGTTTATAGTTTGTTTCTTGAGAAACATATTTTGTACGCCTCNANCCGATACATCTTTTGGTGTTACTGGCGGCCCATATTTTAGACCCCAGATTTCGGGGNCTCGATATATTNNGTGTCCCTCAGAGTTTANAAACCAAGGATGTTGAAATTTGNGGGNAAAAATGNNTTTTAGCTNTTNCTAGGCCAAACTAACCATNATNATTTTCCATNNATCCATAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14216#1 CCAATCTCACAATTTCTCCGCCTTCTCGTCCTCCTCGCCGAACCACCCCCATCGACCCAC 60
consensus_14216#2 ------------------------------------------------------------
consensus_14216#0 ---ATCTCACAATTTCTCCGCCTTCTCGTCCTCCTCGCCGAACCACCCCCATCGACCCAC 57
consensus_14216#3 ------------------------------------------------------------
consensus_14216#1 ACAACCAGCGAACCGGAAGGATTTCACTCAGCTGAGTTTCCTGCCTCCATCCCCACGGCG 120
consensus_14216#2 ------------------------------------------------------------
consensus_14216#0 ACAACCAGCGAACCGGAAGGATTTCACTCAGCTGAGTTTCCTGCCTCCATCCCCACGGCG 117
consensus_14216#3 ------------------------------------------------------------
consensus_14216#1 ATGGCGGAGGAGGCGAAGAATCTGGAGACGGCCCGGGCCGACCGCTCCGTGTGGCTCATG 180
consensus_14216#2 ------------------------------------------------------------
consensus_14216#0 ATGGCGGAGGAGGCGAAGAATCTGGAGACGGCCCGGGCCGACCGCTCCGTGTGGCTCATG 177
consensus_14216#3 ------------------------------------------------------------
consensus_14216#1 AAGTGCCCGACCGTCGTCTCCCGCGCCTGGCAGGAGGCCGCCACCGCCGCCGCCTCCTCC 240
consensus_14216#2 ------------------------------------------------------------
consensus_14216#0 AAGTGCCCGACCGTCGTCTCCCGCGCCTGGCAGGAGGCCGCCACCGCCGCCGCCTCCTCC 237
consensus_14216#3 ------------------------------------------------------------
consensus_14216#1 TCCTCCTCCTCGGACGCCGCCGCTGGCGCCAACTCCAACTCCAACGCGAACCCTAACCCC 300
consensus_14216#2 ------------------------------------------------------------
consensus_14216#0 TCCTCCTCCTCGGACGCCGCCGCTGGCGCCAACTCCAACTCCAACGCGAACCCTAACCCC 297
consensus_14216#3 ------------------------------------------------------------
consensus_14216#1 GTCGTCGCCAAGGTCATCGTCTCCCTCGACCCGCTCCGCTCCGAAGATCAGCAGCTCCAG 360
consensus_14216#2 ------------------------------------------------------------
consensus_14216#0 GTCGTCGCCAAGGTCATCGTCTCCCTCGACCCGCTCCGCTCCGAAGATCAGCAGCTCCAG 357
consensus_14216#3 ------------------------------------------------------------
consensus_14216#1 TTCAAGATGGAGATGGCTCAAACAGGCAATGGCAATACACCAAAGAGTTACTCCTTGAAC 420
consensus_14216#2 ------------------------------------------------------------
consensus_14216#0 TTCAAGATGGAGATGGCTCAAACAGGCAATGGCAATACACCAAAGAGTTACTCCTTGAAC 417
consensus_14216#3 ------------------------------------------------------------
consensus_14216#1 ATGTTCAAGGATTTTGTGCCAATGTGTGTCTTT-CTGAATCCAACCAAGGGAAGCTTTCA 479
consensus_14216#2 -----------------GCCAATGTGTGTCTTTTCTGAATCCAACCAAGGGAAGCTTTCA 43
consensus_14216#0 ATGTTCAAGGATTTTGTGCCAATGTGTGTCTTTTCTGAATCCAACCAAGGGAAGCTTTCA 477
consensus_14216#3 ------------------------------------------------------------
consensus_14216#1 TGCGAAGGGAAAGTCGGGCACAAATTTGACATGGAACCGCACAGCGATAA---------- 529
consensus_14216#2 TGCGAAGGGAAAGTCGGGCACAAATTTGACATGGAACCGCACAGCGATAA---------- 93
consensus_14216#0 TGCGAAGGGAAAGTCGGGCACAAATTTGACATGGAACCGCACAGCGATGAAAATTGATGG 537
consensus_14216#3 ------------------------------------------------------------
consensus_14216#1 -------TCTTGTGAACTATGGGAAGTTATGTCG-------TGAGAGGACTCAAAAATCT 575
consensus_14216#2 -------TCTTGTGAACTATGGGAAGTTATGTCG-------TGAGAGGACTCAAAAATCT 139
consensus_14216#0 TAGGAGTTTTTATGATATTATATATGCCATATTGATCTGCTTCATATGGTAGAAGTATTT 597
consensus_14216#3 ------------------------------------------------------------
consensus_14216#1 ATGATTAAAAATAGAAAATTGAT--------------GGTACTTGCGAATGACAATGGAA 621
consensus_14216#2 ATGATTAAAAATAGAAAATTGAT--------------GGTACTTGCGAATGACAATGGAA 185
consensus_14216#0 ATTGTACAGATTCACCTTTTGCCCTTGTCTGTTTTTAGGTACTTGCGAATGACAATGGAA 657
consensus_14216#3 ------------------------------------------------------------
consensus_14216#1 TGAGCATGAGGCCGTTGCCTGGCTTGGTGGGTCTGATGTCTTCTGGTCCAAAACAGAAGG 681
consensus_14216#2 TGAGCATGAGGCCGTTGCCTGGCTTGGTGGGTCTGATGTCTTCTGGTCCAAAACAGAAGG 245
consensus_14216#0 TGAGCATGAGGCCGTTGCCTGGCTTGGTGGGTCTGATGTCTTCTGGTCCAAAACAGAAGG 717
consensus_14216#3 ------------------------------------------------------------
consensus_14216#1 AGAAGAAGCCACTACCAGTAAAACCATCAGACATGAAAAGAACGAGAAGGGATCGCAGGG 741
consensus_14216#2 AGAAGAAGCCACTACCAGTAAAACCATCAGACATGAAAAGAACGAGAAGGGATCGCAGGG 305
consensus_14216#0 AGAAGAAGCCACTACCAGTAAAACCATCAGACATGAAAAGAACGAGAAGGGATCGCAGGG 777
consensus_14216#3 ------------------------------------------------------------
consensus_14216#1 AACTGGAAAATATCTTATTCAAGCTTTTTGAGAGGCAGCCGAATTGGTCTCTTAAGAATC 801
consensus_14216#2 AACTGGAAAATATCTTATTCAAGCTTTTTGAGAGGCAGCCGAATTGGTCTCTTAAGAATC 365
consensus_14216#0 AACTGGAAAATATCTTATTCAAGCTTTTTGAGAGGCAGCCGAATTGGTCTCTTAAGAATC 837
consensus_14216#3 ------------------------------------------------------------
consensus_14216#1 TCATGCAAGAAACTGATCAACCAGAGCAATTCTTGAAGGAGATATTGAATGATCTGTGTT 861
consensus_14216#2 TCATGCAAGAAACTGATCAACCAGAGCAATTCTTGAAGGAGATATTGAATGATCTGTGTT 425
consensus_14216#0 TCATGCAAGAAACTGATCAACCAGAGCAATTCTTGAAGGAGATATTGAATGATCTGTGTT 897
consensus_14216#3 -----------------------------------AAGGAGATATTGAATGATCTGTGTT 25
*************************
consensus_14216#1 TCTACAACAAAAGGGGTCCAAATCAAGGGACGCATGAACTTAAGCCTGAATACAAGAAAT 921
consensus_14216#2 TCTACAACAAAAGGGGTCCAAATCAAGGGACGCATGAACTTAAGCCTGAATACAAGAAAT 485
consensus_14216#0 TCTACAACAAAAGGGGTCCAAATCAAGGGACGCATGAACTTAAGCCTGAATACAAGAAAT 957
consensus_14216#3 TNTACAACAAAAGGGGTCCAAATCAAGGGACGCATGAACTTAAGCCTGAATACAAGAAAT 85
* **********************************************************
consensus_14216#1 CTACAGAGGACGCTGATGCTACTGCTACTTAGAAGTCTTATGCTTCGGTCTACTAGATAG 981
consensus_14216#2 CTACAGAGGACGCTGATGCTACTGCTACTTAGAAGTCTTATGCTTCGGTCTACTAGATAG 545
consensus_14216#0 CTACAGAGGACGCTGATGCTACTGCTACTTAGAAGTCTTATGCTTCGGTCTACTAGATAG 1017
consensus_14216#3 CTACAGAGGACGCTGATGCTNCTGCTACTTAGAAGTCTTATGCTTCGGTCTACTAGATAG 145
******************** ***************************************
consensus_14216#1 GAGTCCTCGTCCAGTGTGGACTCCAATCC-GTTACTTGCTGCGTTCAAGGAAATCTTGGA 1040
consensus_14216#2 GAGTCCTCGTCCAGTGTGGACTCCAATCC-GTTACTTGCTGCGTTCAAGGAAATCTTGGA 604
consensus_14216#0 GAGTCCTCGTCCAGTGTGGACTCCAATCC-GTTACTTGCTGCGTTCAAGGAAATCTTGGA 1076
consensus_14216#3 GAGTCCTCGTCCAGTGTGGACTCCAATCCCGTTACNTGCTGCGTTCAAGGAAATCTTGGA 205
***************************** ***** ************************
consensus_14216#1 TACTTCGTTTATAGTTTGTTTCTTGAGAAACATATTTTGTACGCATCAAGC-GATACATC 1099
consensus_14216#2 TACTTCGTTTATAGTTTGTTTCTTGAGAAACATATTTTGTACGCATCAAGC-GATACATC 663
consensus_14216#0 TACTTCGTTTATAGTTTGTTTCTTGAGAAACATATTTTGTACGCATCAAGC-GATACATC 1135
consensus_14216#3 TACTTCGTTTATAGTTTGTTTCTTGAGAAACATATTTTGTACGCCTCNANCCGATACATC 265
******************************************** ** * * ********
consensus_14216#1 TTTTGGTGTTACTGGCGGCC-ATATCTTAGACCC-AGATTTCGGGGACTCGATATATTCG 1157
consensus_14216#2 TTTTGGTGTTACTGGCGGCC-ATATCTTAGACCC-AGATTTCGGGGACTCGATATATTCG 721
consensus_14216#0 TTTTGGTGTTACTGGCGGCC-ATATCTTAGACCC-AGATTTCGGGGACTCGATATATTCG 1193
consensus_14216#3 TTTTGGTGTTACTGGCGGCCCATATTTTAGACCCCAGATTTCGGGGNCTCGATATATTNN 325
******************** **** ******** *********** ***********
consensus_14216#1 -TGTCCATCAGAGTTTAGAAAC-AAGGATGTTGAAATTTGTGTGTATAA-TGTATTTTAG 1214
consensus_14216#2 -TGTCCATCAGAGTTTAGAAAC-AAGGATGTTGAAATTTGTGTGTATAA-TGTATTTTAG 778
consensus_14216#0 -TGTCCATCAGAGTTTAGAAAC-AAGGATGTTGAAATTTGTGTGTATAA-TGTATTTTAG 1250
consensus_14216#3 GTGTCCCTCAGAGTTTANAAACCAAGGATGTTGAAATTTGNGGGNAAAAATGNNTTTTAG 385
***** ********** **** ***************** * * * ** ** ******
consensus_14216#1 CTCTTC-TAGGC-AAACTAAC-ATGATGATTTTCA--TGATCATTAAAAAAAAAAAAAAA 1269
consensus_14216#2 CTCTTC-TAGGC-AAACTAAC-ATGATGATTTTCA--TGATCATTAAACACCTTGACCTA 833
consensus_14216#0 CTCTTC-TAGGC-AAACTAAC-ATGATGATTTTCA--TGATCATTAAACACCTTGACCTA 1305
consensus_14216#3 CTNTTNCTAGGCCAAACTAACCATNATNATTTTCCATNNATCCATAAAAAAA-------- 437
** ** ***** ******** ** ** ****** *** **** *
consensus_14216#1 A--------AAAAA--- 1275
consensus_14216#2 A--------AAAAAAGA 842
consensus_14216#0 CTCTTCCCTGCAAAAAA 1322
consensus_14216#3 -----------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||