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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14217#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1814 fasta sequence
[CTAGTGGGCTTTACACAGCCAAATAATTCAGATTACCGTAAAACCTCCGCCCCCAGCTAGCGGGCTGGTGTTTCCTCCGCCGCCGCCGCCGCAAATGGAGGCCCTCCTCCGGTGGGCGGCGGAGCTGGGCGTCTCCGACTCCCCGTCCGCGCCCTCCCCCTCCTCCTGCCTCGGCCGCTCCGTCCTCATCGCCGACTTCCCCGACGCCGGCGGGAGGGGCTTGGCGGCGGCGCGGGACCTCCGGCGCGGCGAGCTGGTGCTGCGGGCGCCGCGCGCCGCCCTGCTCACCAGCGGCCGCGTCATGGACGATGACCCCAGGATCGCCTCCTCCGTCGCCAGCCACCTCCCCCGCCTCCCCTCCGTCCAGACCCTGATCATATGTTTGTTGTCTGAAGTGGGAAAAGGGAAGAGTTCAAATTGGTATCTATATTTGTCTCAGCTGCCCTCCTACTACACTATCTTGGCTACCTTCAATGATTTTGAAACTGAAGCTCTCCAAGTTGATGAGGCTATTTGGGTTGCTCAAAAGGCTCTTCGTGGAATAAGATCAGACTGGGAAGAAGCAACACCACTGATGAAAGGGTTGGGATTTAAACCTAAGC-TTTGATGTTTAAATCATGGATCTGGGCTTTTGCAACGGTATC-TTCAAGAACATTGCATATAGCATGGGA-TGATGCT-GGTTGTCTATGTCCTATTGGTGATTTGTTCAATTATGCTGCTCCTAATGATGACAATTCATCAACGGATGAAGATAGAGATGATATGATGCATCAGGAGACAAATAAGATGTTGGACCAGACAGATTTTGATTCATCTGAGAAGTTGACAGATGGGGGATATG-AAGATGTTAATGAATACCGTCTGTATGCTCGGAAAAGATATAGAAAAGGAGAGCAGGTACTTCTGGCTTATGGAACGTATACAAACTTGGAACTTCTTGAGCATTATGGTTTTCTTTTGGGTGAGAACCCTAATGAGAAAATCTACATTCCATTAGATTTGGATTTATGCATGATCGGTTCTTGGCCAAGAGATTCCTTGTATATTCTGCCAAATGGACATCCCTCATTTGCATTGCTGTGTGCATTAAGGCTTTGGACAACT-CCCAGAAATCGTCGGAAAGCCTTAAGTCATCAGATCTACTCTGGATCATTGTTATCTGTTGAAAATGAGCTGGAGATTCTGAAATGGTTGGTCAAGAAGTGCAAGGAAACTTTGCAGCAATTACCTACGACTATAGAATTTGATGATAATTTGCTCGTCCTTTTATGCAAGCTACAGAACAGCACTAGCTGCATAACAGAAATGAACCGGTCAATCTTTGAGCAAGAATTTGCTCCATTCTTCAGATTTCATGGCTTCAAGCTGGATTGTTCTATACACAGTAAACTCCCAGTTCGTCTTCTACGATCCCTGGAAAGATGGGGATTAGCTGTCCAGTGGAGATGCAACTACAAAAGAACCCTAACCAAGTGTATTGTGCACTGTAAAAGTTTAGTTCACGAGCTTTCGTTGCAACAAAATCAACAATAGCTCAAAGATTCAAGCTAACTATGTTCTTTAGAATGCAGAAGTTCTTGATACAACAAAAATCAACAATAGCTCAAAGATTCAAGCT-AATTATGTTTTTTTAATGCAGAAGTTCTTGATACATTTTTGCTTAACAGCATGTCAAATTGTCAACACTCGATAGCAGGGCGAGGTGCTTTCATAGTTCCATGCATCACACTTTTTGGGGTTGCATAGTTTAAGCATAACAAGCGTTCTGTGGAATGCCTTCTGTGGAATGCCGCTGAGATACTGATAATTGATTA]
[+] EMBL AK103840 [CTAGTGGGCTTTACACAGCCAAATAATTCAGATTACCGTAAAACCTCCGCCCCCAGCTAGCGGGCTGGTGTTTCCTCCGCCGCCGCCGCCGCAAATGGAGGCCCTCCTCCGGTGGGCGGCGGAGCTGGGCGTCTCCGACTCCCCGTCCGCGCCCTCCCCCTCCTCCTGCCTCGGCCGCTCCGTCCTCATCGCCGACTTCCCCGACGCCGGCGGGAGGGGCTTGGCGGCGGCGCGGGACCTCCGGCGCGGCGAGCTGGTGCTGCGGGCGCCGCGCGCCGCCCTGCTCACCAGCGGCCGCGTCATGGACGATGACCCCAGGATCGCCTCCTCCGTCGCCAGCCACCTCCCCCGCCTCCCCTCCGTCCAGACCCTGATCATATGTTTGTTGTCTGAAGTGGGAAAAGGGAAGAGTTCAAATTGGTATCTATATTTGTCTCAGCTGCCCTCCTACTACACTATCTTGGCTACCTTCAATGATTTTGAAACTGAAGCTCTCCAAGTTGATGAGGCTATTTGGGTTGCTCAAAAGGCTCTTCGTGGAATAAGATCAGACTGGGAAGAAGCAACACCACTGATGAAAGGGTTGGGATTTAAACCTAAGC TTTGATGTTTAAATCATGGATCTGGGCTTTTGCAACGGTATC TTCAAGAACATTGCATATAGCATGGGA TGATGCT GGTTGTCTATGTCCTATTGGTGATTTGTTCAATTATGCTGCTCCTAATGATGACAATTCATCAACGGATGAAGATAGAGATGATATGATGCATCAGGAGACAAATAAGATGTTGGACCAGACAGATTTTGATTCATCTGAGAAGTTGACAGATGGGGGATATG AAGATGTTAATGAATACCGTCTGTATGCTCGGAAAAGATATAGAAAAGGAGAGCAGGTACTTCTGGCTTATGGAACGTATACAAACTTGGAACTTCTTGAGCATTATGGTTTTCTTTTGGGTGAGAACCCTAATGAGAAAATCTACATTCCATTAGATTTGGATTTATGCATGATCGGTTCTTGGCCAAGAGATTCCTTGTATATTCTGCCAAATGGACATCCCTCATTTGCATTGCTGTGTGCATTAAGGCTTTGGACAACT CCCAGAAATCGTCGGAAAGCCTTAAGTCATCAGATCTACTCTGGATCATTGTTATCTGTTGAAAATGAGCTGGAGATTCTGAAATGGTTGGTCAAGAAGTGCAAGGAAACTTTGCAGCAATTACCTACGACTATAGAATTTGATGATAATTTGCTCGTCCTTTTATGCAAGCTACAGAACAGCACTAGCTGCATAACAGAAATGAACCGGTCAATCTTTGAGCAAGAATTTGCTCCATTCTTCAGATTTCATGGCTTCAAGCTGGATTGTTCTATACACAGTAAACTCCCAGTTCGTCTTCTACGATCCCTGGAAAGATGGGGATTAGCTGTCCAGTGGAGATGCAACTACAAAAGAACCCTAACCAAGTGTATTGTGCACTGTAAAAGTTTAGTTCACGAGCTTTCGTTGCAACAAAATCAACAATAGCTCAAAGATTCAAGCTAACTATGTTCTTTAGAATGCAGAAGTTCTTGATACAACAAAAATCAACAATAGCTCAAAGATTCAAGCT AATTATGTTTTTTTAATGCAGAAGTTCTTGATACATTTTTGCTTAACAGCATGTCAAATTGTCAACACTCGATAGCAGGGCGAGGTGCTTTCATAGTTCCATGCATCACACTTTTTGGGGTTGCATAGTTTAAGCATAACAAGCGTTCTGTGGAATGCCTTCTGTGGAATGCCGCTGAGATACTGATAATTGATTA]
[+] EMBL CF310938 [ CCCTGATCATATGTTTGTTGTCTGAGGTGGGAAAAGGGAAGAGTTCAAATTGGTATCTATATTTGTCTCAGCTGCCCTCCTACTACACTATCTTGGCTACCTTCAATGATTTTGAAACTGAAGCTCTCCAAGTTGATGAGGCTATTTGGGTTGCTCAAAAGGCTCTTCGTGGAATAAGATCAGACTGGGAAGAAGCAACACCACTGATGAAAGGGTTGGGATTTAAACCTAAGCTTTTGATGTTTAAATCATGGATCTGGGCTTTTGCAACGGTATC TTCAAGAACATTGCATATAGCATGGGA TGATGCT GGTTGTCTATGTCCTATTGGTGATTTGTTCAATTATGCTGCTCCTAATGATGACGATTCATCAACGGATGAAGATAGAGATGATATGATGCATCAGGAGACAAATAAGATGTTGGACCAGACAGATTTTGATTCATCTGAGAAGTTGACAGATGGGGGATATGAAAGATGTTAATGAATACCGTCTGTATGCTCGGAAAAGATATAGAAAAGGAGAGCAGGTACTTCTGGCTTATGGAACGTATACAAACTTGGAACTTCTTGAGCATTATGGTTTTCTTTTGGGTGAGAACCCTAATGAGAAA ]
[+] EMBL C27514 [ AAGAGTTCAAATTGGTATCTATATTTGTNTCAGCTGCCCTCCTACTACACTATCTTGGCTACCTTCAATGATTTTAAAACTGAAGCTCTCCAAGTTGATGAGGCTATTTGGGTTGCTCAAAAGGCTCTTCGTGGAATAAGATCAGACTGGGAAGAAGCAACACCACTGATGAAAGGGTTGGGATTTAAACCTAAGCTTTTGATGTTTAAATCATGGATCTGGGCTTTTGCAACGGTATCTTTCANGANCATTGCATATAGCATGGGATTGATGCTGGGTNGTCTATGTCCTATTGGGGNTTTGTc ]
[-] EMBL CB650628 [ AGAAAAGGAGAGCAGGTACTTCTGGCTTATGGAACGTATACAAACTTGGAACTTCTTGAGCATTATGGTTTTCTTTTGGGTGAGAACCCTAATGAGAAAATCTACATTCCATTAGATTTGGATTTATGCATGATCGGTTCTTGGCCAAGAGATTCCTTGTATATTCTGCCAAATGGACATCCCTCATTTGCATTGCTGTGTGCATTAAGGCTTTGGACAACT CCCAGAAATCGTCGGAAAGCCTTAAGTCATCAGATCTACTCTGGATCATTGTTATCTGTTGAAAATGAGCTGGAGATTCTGAAATGGTTGGTCAAGAAGTGCAAGGAAACTTTGCAGCAATTACCTACGACTATAGAATTTGATGATAATTTGCTCGTCCTTTTATGCAAGCTACAGAACAGCACTAGCTGCATAACAGAAATGAACCGGTCAACCTTTGAGCAAGAATTTGCTCCATTCTTCAGATTTCATGGCTTCAAGCTGGATTGTTCTATACACAGTAAACTCCCAGTTCGTCTTTTACGATCCCTGGAAAGATGGGGATTAGCTGTCCAGTGGAGATGCAACTACAAAAGAACCCTAACCAAGTGTATTGTGCACTGTAAAAGTTTAGTTCACGAGCTTTCGTTGCAACAAAATCAACAATAGCTCAAAGATTCAAGCTAACTATGTTTTTTAGGATGCAGAAGTTCTTGATACAACAAAAATCAACAATAGCTCAAAGATTCAAGCT AATTAT TTTTTTTTATACGGAAGTTCTTGATACATTTTTG ]
[-] EMBL CB619011 [ CTTCTGGCTTATGGAACGTATACAAACTTGGAACTTCTTGAGCATTATGGTTTTCTTTTGGGTGAGAACCCTAATGAGAAAATCTACATTCCATTAGATTTGGATTTATGCATGATCGGTTCTTGGCCAAGAGATTCCTTGTATATTCTGCCAAATGGACATCCCTCATTTGCATTGCTGTGTGCATTAAGGCTTTGGACAACT CCCAGAAATCGTCGGAAAGCCTTAAGTCATCAGATCTACTCTGGATCATTGTTATCTGTTGAAAATGAGCTGGAGATTCTGAAATGGTTGGTCAAGAAGTGCAAGGAAACTTTGCAGCAATTACCTACGACTATAGAATTTGATGATAATTTGCTCGTCCTTTTATGCAAGCTACAGAACAGCACTAGCTGCATAACAGAAATGAACCGGTCAATCTTTGAGCAAGAATTTGCTCCATTCTTCAGATTTCATGGCTTCAAGCTGGATTGTTCTATACACAGTAAACTCCCAGTTCGTCTTTTACGATCCCTGGAAAGATGGGGATTAGCTGTCCAGTGGAGATGCAACTACAAAAGAACCCTAACCAAGTGTATTGTGCACTGTAAAAGTTTAGTTCACGAGCTTTCGTTGCAACAAAATCAACAATAGCTCAAAGATTCAAGCTAACTATGTTCTTTAGAATGCAGAAGTTCTTGATACAACAAAAATCAAAAAAAAAAAAAAGA ]
[-] EMBL CB649655 [ TTCTGGCTTATGGAACGTATACAAACTTGGAACTTCTTGAGCATTATGGTTTTCTTTTGGGTGAGAACCCTAATGAGAAAATCTACATTCCATTAGATTTGGATTTATGCATGATCGGTTCTTGGCCAAGAGATTCCTTGTATATTCTGCCAAATGGACATCCCTCATTTGCATTGCTGTGTGCATTAAGGCTTTGGACAACT CCCAGAAATCGTCGGAAAGCCTTAAGTCATCAGATCTACTCTGGATCATTGTTATCTGTTGAAAATGAGCTGGAGATTCTGAAATGGTTGGTCAAGAAGTGCAAGGAAACTTTGCAGCAATTACCTACGACTATAGAATTTGATGATAATTTGCTCGTCCTTTTATGCAAGCTACAGAACAGCACTAGCTGCATAACAGAAATGAACCGGTCAATCTTTGAGCAAGAATTTGCTCCATTCTTCAGATTTCATGGCTTCAAGCTGGATTGTTCTATACACAGTAAACTCCCAGTTCGTCTTCTACGATCCCTGGAAAGATGGGGATTAGCTGTCCAGTGGAGATGCAACTACAAAAGAACCCTAACCAAGTGTATTGTGCACTGTAAAAGTTTAGTTCACGAGCTTTCGTTGCAACAAAATCAACAATAGCTCAAAGATTCAAGCTAACTATGTTCTTTAGAATGCAGAAGTTCTTGATACAACAAAAATCAACAATAGCTCAAAGATTCAAGCT AATTATGTTTTTTTAATGCAGAAG ]
[-] EMBL CB649654 [ GTTTTCTTTTGGGTGAGAACCTTAATGAGAAAATTTACATTCCATTAGATTTGGATTTATGCATGATCGGTTCTTGGCCAAGAGATTCCTTGTATATTCTGCCAAATGGACATCCCTCATTTGCATTGCTGTGTGCATTAAGGCTTTGGACAACT CCCAGAAATCGTCGGAAAGCCTTAAGTCATCAGATCTACTCTGGATCATTGTTATCTGTTGAAAATGAGCTGGAGATTCTGAAATGGTTGGTCAAGAAGTGCAAGGAAACTTTGCAGCAATTACCTACGACTATAGAATTTGATGATAATTTGCTCGTCCTTTTATGCAAGCTACAGAACAGCACTAGCTGCATAACAGAAATGAACCGGTCAATCTTTGAGCAAGAATTTGTTCCATTCTTCAGATTTCATGGTTTCAAGCTGGATTGTTTTATACACAGTAAACTCCCAGTTCGTTTTTTACGATCCCTGGAAAGATGGGGATTAGCTGTCCAGTGGAGATGCAATTACAAAAGAACCCTAACCAAGTGTATTGTGCACTGTAAAAGTTTAGTTCACGAGCTTTTGTTGCAACAAAATCAACAATAGttna ]
[-] EMBL CB618898 [ TTCCATTAGATTTGGATTTATGCATGATCGGTTCTTGGCCAAGAGATTCCTTGTATATTCTGCCAAATGGACATCCCTCATTTGCATTGCTGTGTGCATTAAGGCTTTGGACAACT CCCAGAAATCGTCGGAAAGCCTTAAGTCATCAGATCTACTCTGGATCATTGTTATCTGTTGAAAATGAGCTGGAGATTCTGAAATGGTTGGTCAAGAAGTGCAAGGAAACTTTGCAGCAATTACCTACGACTATAGAATTTGATGATAATTTGCTCGTCCTTTTATGCAAGCTACAGAACAGCACTAGCTGCATAACAGAAATGAACCGGTCAATCTTTGAGCAAGAATTTGCTCCATTCTTCAGATTTCATGGCTTCAAGCTGGATTGTTCTATACACAGTAAACTCCCAGTTCGTCTTTTACGATCCCTGGAAAGATGGGGATTAGCTGTCCAGTGGAGATGCAACTACAAAAGAACCCTAACCAAGTGTATTGTGCACTGTAAAAGTTTAGTTCACGAGCTTTCGTTGCAACAAAATCAACAATAGCTCAAAGATTCAAGCTAACTATGTTCTTTAGAAGGCA ]
[-] EMBL CF310469 [ GCTGTGTGCATTAAGGCTTTGGACAACTCCCCAGAAATCGTCGGAAAGCCTTAAGTCATCAGATCTACTCTGGATCATTGTTATCTGTTGAAAATGAGCTGGAGATTCTGAAATGGTTGGTCAAGAAGTGCAAGGAAACTTTGCAGCAATTACCTACGACTATAGAATTTGATGATAATTTGCTCGTCCTTTTATGCAAGCTACAGAACAGCACTAGCTGCATAACAGAAATGAACCGGTCAATCTTTGAGCAAGAATTTGCTCCACTCTTCAGATTTCATGGCTTCAAGCTGGATTGTTCTATACACAGTAAACTCCCAGTTCGTCTTCTACGATCCCTGGAAAGATGGGGATTAGCTGTCCAGTGGAGATGCAACTACAAAAGAACCCTAACCAAGTGTATTGTGCACTGTAAAAGTTTAGTTCACGAGCTTTCGTTGCAACAAAATCAACAATAGCTCAAAGATTCAAGCTAACTATGTTCTTTAGAATGCAGAAGTTCTTGATACAACAAAAATCAACAATAGCTCAAAGATTCAAGCTNAATTATGTTTTTTTAATGCAGAAaaaaaa ]
[-] EMBL CF310939 [ ATCTGTTGAAAATGAGCTGGAGATTCTGAAATGGTTGGTCAAGAAGTGCAAGGAAACTTTGCAGCAATTACCTACGACTATAGAATTTGATGATAATTTGCTCGTCCTTTTATGCAAGCTACAGAACAGCACTAGCTGCATAACAGAAATGAACCGGTCAATCTTTGAGCAAGAATTTGCTCCATTCTTCAGATTTCATGGCTTCAAGCTGGATTGTTCTATACACAGTAAACTCCCAGTTCGTCTTCTACGATCCCTGGAAAGATGGGGATTAGCTGTCCAGTGGAGATGCAACTACAAAAGAACCCTAACCAAGTGTATTGTGCACTGTAAAAGTTTAGTTCACAAGCTTTCGTTGCAACAAAATCAACAATAGCTCAAAGATTCAAGCTAACTATGTTCTTTAGAATGCAGAAGTTCTTGATACAACAAAAATCAACAATAGCTCAAAGATTCAAGCT AATTATGTTTTTTTAATGCAGAAGTTCTTGATACATTTTTGCTTAACAGCATGTCAAATTGTCAACACTCGATAGCAaaaaa ]
consensusID : consensus_14217#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1259 fasta sequence
[TTTCAGGTTGATGAGGCTATTTGGGTTGCTCAAAAGGCTCTTCGTGGAATAAGATCAGACTGGGAAGAAGCAACACCACTGATGAAAGGGTTGGGATTTAAACCTAAGCTTTTGATGTTTAAATCATGGATCTGGGCTTTTGCAACGGTATCTTCAAGAACATTGCATATAGCATGGGATGATGCTGGTTGTCTATGTCCTATTGGTGATTTGTTCAATTATACTGCTCCTAATGATGACAACTCATCAACGGATGAAGATAGAGATGATATGATGCATCAGGAGACAAATAGGATGTTGGACCAGACAGATTTTGATTCATCCGAGAAGTTGACAGATGGGGGATATGAAGATGTTAATGAATACCGTCTGTATGCTCGGAAAAGATATAGAAAAGGAGAGCAGGTTTCTTCTGATATTTGCCTAAAATATATGCCCTTTTTTGTCTATAGGATGCTCATGTTCTCCCGTATCACATTATCTGCCTTCTTGTTGTTCTGTACTTTTGAATTAAACTTTGTCCTTTCGTACAGGTACTTCTGGCTTATGGAACGTATACAAACTTGGAACTTCTTGAGCATTATGGTTTTCTTTTGGGTGAGAACCCTAATGAGAAAATCTACATTCCATTAGATTTGGATTTATGCATGATCGGTTCTTGGCCAAGAGATTCCTTGTATATTTTGCCAAATGGACATCCCTCATTTGCATTGCTGTGTGCATTAAGGCTTTGGACAACTCCCAGAAATCGTCGGAAAGCCTTAAGTCATCAGATCTACTCTGGATCATTGTTATCTGTTGAAAATGAGCTGGAGATTTTGAAATGGTTGGTCAAGAAGTGCAAGGAAACTTTGCAGCAATTACCTACGACTATAGAATTTGATGATAATTTGCTCGTCCTTTTATGCAAGCTACAGAACAGCACTAGCTGCATAACAGAAATGAACCGGTCAACCTTTGAGCAAGAATTTGCTCCATTTTTCAGATTTCATGGCTTCAAGCTGGATTGTTTTATACACAGTAAACTCCCAGTTCGTTTTTTACGATCCCTGGAAAGATGGGGATTAGCTGTCCAGTGGAGATGCAACTACAAAAGAACCCTAACCAAGTGTATTGTGCACTGTAAAAGTTTAGTTCACGAGCTTTCGTTGCAACAAAATCAACAATAGCTCAAAGATTCAAGCTAACTATGTTCTTTAGAATGCAGAAGTTCTTGATACAACAAAAATCAACAATAGCTCAAAGATCACCGGAGGAGG]
[+] EMBL CF310468 [TTTCAGGTTGATGAGGCTATTTGGGTTGCTCAAAAGGCTCTTCGTGGAATAAGATCAGACTGGGAAGAAGCAACACCACTGATGAAAGGGTTGGGATTTAAACCTAAGCTTTTGATGTTTAAATCATGGATCTGGGCTTTTGCAACGGTATCTTCAAGAACATTGCATATAGCATGGGATGATGCTGGTTGTCTATGTCCTATTGGTGATTTGTTCAATTATACTGCTCCTAATGATGACAACTCATCAACGGATGAAGATAGAGATGATATGATGCATCAGGAGACAAATAGGATGTTGGACCAGACAGATTTTGATTCATCCGAGAAGTTGACAGATGGGGGATATGAAGATGTTAATGAATACCGTCTGTATGCTCGGAAAAGATATAGAAAAGGAGAGCAGGTTTCTTCTGATATTTGCCTAAAATATATGCCCTTTTTTGTCTATAGGATGCTCATGTTCTCCCGTATCACATTATCTGCCTTCTTGTTGTTCTGTACTTTTGAATTAAACTTTGTCCTTTCGTACAGGTACTTCTGGCTTATGGAACGTATACAAACTTGGAACTTCTTGAGCATTATGGTTTTCTTTTGGGTGAGAACCCTAATGAGAAAAT ]
[-] EMBL CB618974 [ TCCTTTCGTACAGGTACTTCTGGCTTATGGAACGTATACAAACTTGGAACTTCTTGAGCATTATGGTTTTCTTTTGGGTGAGAACCCTAATGAGAAAATCTACATTCCATTAGATTTGGATTTATGCATGATCGGTTCTTGGCCAAGAGATTCCTTGTATATTCTGCCAAATGGACATCCCTCATTTGCATTGCTGTGTGCATTAAGGCTTTGGACAACTCCCAGAAATCGTCGGAAAGCCTTAAGTCATCAGATCTACTCTGGATCATTGTTATCTGTTGAAAATGAGCTGGAGATTCTGAAATGGTTGGTCAAGAAGTGCAAGGAAACTTTGCAGCAATTACCTACGACTATAGAATTTGATGATAATTTGCTCGTCCTTTTATGCAAGCTACAGAACAGCACTAGCTGCATAACAGAAATGAACCGGTCAATCTTTGAGCAAGAATTTGCTCCATTCTTCAGATTTCATGGCTTCAAGCTGGATTGTTCTATACACAGTAAACTCCCAGTTCGTCTTTTACGATCCCTGGAAAGATGGGGATTAGCTGTCCAGTGGAGATGCAACTACAAAAGAACCCTAACCAAGTGTATTGTGCACTGTAAAAGTTTAGTTCACGAGCTTTCGTTGCAACAAAATCAACAATAGCTCAAAGATTCAAGCTAACTATGTTCTTTAGAATGCAGAAGTTCTTGATACA ]
[-] EMBL CB645791 [ AACCCTAATGAGAAAATCTACATTCCATTAGATTTGGATTTATGCATAATCGGTTTTTGGCCAAGAGATTCCTTGTATATTTTGCCAAATGGACATCCCTCATTTGCATTGCTGTGTGCATTAAGGCTTTGGACAACTCCCAGAAATCGTCGGAAAGCCTTAAGTCATCAGATCTACTCTGGATCATTGTTATCTGTTGAAAATGAGCTGGAGATTTTGAAATGGTTGGTCAAGAAGTGCAAGGAAACTTTGCAGCAATTACCTACGACTATAGAATTTGATGATAATTTGCTCGTCCTTTTATGCAAGCTACAGAACAGCACTAGCTGCATAACAGAAATGAACCGGTCAACCTTTGAGCAAGAATTTGCTCCATTTTTCAGATTTCATGGCTTCAAGCTGGATTGTTTTATACACAGTAAACTCCCAGTTCGTTTTTTACGATCCCTGGAAAGATGGGGATTAGCTGTCCAGTGGAGATGCAACTACAAAAGAACCCTAACCAAGTGTATTGTGCACTGTAAAAGTTTAGTTCACGAGCTTTCGTTGCAACAAAATCAACAATAGCTCAAAGATTCAAGCTAACTATGTTCTTTAGAATGGGGAAGTTCTTGATACAACAAAAATCAACAATAGCTCAAAGATCACCGGAGGAGG]
[-] EMBL CB650627 [ CCAAGAGATTCTTTGTATATTTTGCCAAATGGAAATCCTTCATTTGCATTGCTGTGTGCATTAAGGTTTTGGACAACTTCCAGAAATTGTCGGAAAGCCTTAAGTCATCAGATTTACTCTGGATCATTGTTATTTGTTGAAAATAAGCTGGAGATTTTGAAATGGTTGGTCAAGAAGTGCAAGAAAAATTTGCAGCAATTACTTACGATTATAGAATTTGATGATAATTTGTTCGTCCTTTTATGCAAGATACAGAACAGCATTAGTTGCATAACAGAAATGAACCGGTCAACCTTTGAGCAAGAATTTGTTCCATTTTTCAGATTTCATGGCTTCAAGCTGGATTGTTTTATACACAGTAAATTCCCAGTTTGTTTTTTACGATCCCTGGAAAGATGGGGATTAATTTTCCAGTGGAGATGCAATTACAAAAGAACCCTAACCAAGTGTATTGTGCACTGTAAAAGTTTAGTTTACGAGTTTTTGTTGCAACAAAATCAACAATAGTTCAAAGATTCAAGTTAATTATTTTTTTTAGAATGC ]
consensusID : consensus_14217#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence
[TTCCCATTANGATTTGGATTTAATGCATGATCGGTTCTTGGCCCAAGAGATTCCTTGTATATTCTGCCAATGGACATCCCTCATTTGCATTGCTGTGTGCATTAAGGCTTTGGACAACTCCCAGAAATCGTCGGAAAGCCTTAAGTCATCAGATCTACTCTGGATCATTGTTAACTGTTGAAAATGAGCTGGAGATTCTGAAATGGTTGGTCAAGAAGTGCAAGGAAACTTTGCAGCAATTACCTACGACTATAGAATTTGATGATAATTTGCTCGTCCTTTTATGCAAGCTACAGAACAGCACTAGCTGCATAACAGAAATGAACCGGTCAATCTTTGAGCAAGAATTTGCTCCATTCTTCAGATTTCATGGCTTCAAGCTGGATTGTTCTATACACAGTAAACTCCCAGTTCGTCTTCTACGATCCCTGGAAAGATGGGGATTAGCTGTCCAGTGGAGATGCAACTACAAAAGAACCCTAACCAAGTGTATTGTGCACTGTAAAAGTTTAGTTCACGAGCTTTCGTTGCAACAAAATCAACAATAGCTCAAAGATTCAAGCTAACTATGTTCTTTAGAATGCAGAAGTTCTTGATACAACAAAAATCAACAATAGCTCAAAGATTCAAGCTAATTATGTTTTTTTAATGCAGAAGTTCTTGATACATTTTTGCTTAAAAAAAAAAAAA]
[+] EMBL AU085731 [TTCCCATTANGATTTGGATTTAATGCATGATCGGTTCTTGGCCCAAGAGATTCCTTGTATATTCTGCCAATGGACATCCCTCATTTGCATTGCTGTGTGCATTAAGGCTTTGGACAACTCCCAGAAATCGTCGGAAAGCCTTAAGTCATCAGATCTACTCTGGATCATTGTTAACTGTTGAAAATGAGCTGGAGATTCTGAAATGGTTGGTCAAGAAGTGCAAGGAAACTTTGCAGCAATTACCTACGACTATAGAATTTGATGATAATTTGCTCGTCCTTTTATGCAAGCTACAGAACAGCACTAGCTGCATAACAGAAATGAACCGGTCAATCTTTGAGCAAGAATTTGCTCCATTCTTCAGATTTCATGGCTTCAAGCTGGATTGTTCTATACACAGTAAACTCCCAGTTCGTCTTCTACGATCCCTGGAAAGATGGGGATTAGCTGTCCAGTGGAGATGCAACTACAAAAGAACCCTAACCAAGTGTATTGTGCACTGTAAAAGTTTAGTTCACGAGCTTTCGTTGCAACAAAATCAACAATAGCTCAAAGATTCAAGCTAACTATGTTCTTTAGAATGCAGAAGTTCTTGATACAACAAAAATCAACAATAGCTCAAAGATTCAAGCTAATTATGTTTTTTTAATGCAGAAGTTCTTGATACATTTTTGCTTAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14217#0 CTAGTGGGCTTTACACAGCCAAATAATTCAGATTACCGTAAAACCTCCGCCCCCAGCTAG 60
consensus_14217#2 ------------------------------------------------------------
consensus_14217#1 ------------------------------------------------------------
consensus_14217#0 CGGGCTGGTGTTTCCTCCGCCGCCGCCGCCGCAAATGGAGGCCCTCCTCCGGTGGGCGGC 120
consensus_14217#2 ------------------------------------------------------------
consensus_14217#1 ------------------------------------------------------------
consensus_14217#0 GGAGCTGGGCGTCTCCGACTCCCCGTCCGCGCCCTCCCCCTCCTCCTGCCTCGGCCGCTC 180
consensus_14217#2 ------------------------------------------------------------
consensus_14217#1 ------------------------------------------------------------
consensus_14217#0 CGTCCTCATCGCCGACTTCCCCGACGCCGGCGGGAGGGGCTTGGCGGCGGCGCGGGACCT 240
consensus_14217#2 ------------------------------------------------------------
consensus_14217#1 ------------------------------------------------------------
consensus_14217#0 CCGGCGCGGCGAGCTGGTGCTGCGGGCGCCGCGCGCCGCCCTGCTCACCAGCGGCCGCGT 300
consensus_14217#2 ------------------------------------------------------------
consensus_14217#1 ------------------------------------------------------------
consensus_14217#0 CATGGACGATGACCCCAGGATCGCCTCCTCCGTCGCCAGCCACCTCCCCCGCCTCCCCTC 360
consensus_14217#2 ------------------------------------------------------------
consensus_14217#1 ------------------------------------------------------------
consensus_14217#0 CGTCCAGACCCTGATCATATGTTTGTTGTCTGAAGTGGGAAAAGGGAAGAGTTCAAATTG 420
consensus_14217#2 ------------------------------------------------------------
consensus_14217#1 ------------------------------------------------------------
consensus_14217#0 GTATCTATATTTGTCTCAGCTGCCCTCCTACTACACTATCTTGGCTACCTTCAATGATTT 480
consensus_14217#2 ------------------------------------------------------------
consensus_14217#1 ------------------------------------------------------------
consensus_14217#0 TGAAACTGAAGCTCTCCAAGTTGATGAGGCTATTTGGGTTGCTCAAAAGGCTCTTCGTGG 540
consensus_14217#2 ------------------------------------------------------------
consensus_14217#1 -------------TTTCAGGTTGATGAGGCTATTTGGGTTGCTCAAAAGGCTCTTCGTGG 47
consensus_14217#0 AATAAGATCAGACTGGGAAGAAGCAACACCACTGATGAAAGGGTTGGGATTTAAACCTAA 600
consensus_14217#2 ------------------------------------------------------------
consensus_14217#1 AATAAGATCAGACTGGGAAGAAGCAACACCACTGATGAAAGGGTTGGGATTTAAACCTAA 107
consensus_14217#0 GCTTT-GATGTTTAAATCATGGATCTGGGCTTTTGCAACGGTATCTTCAAGAACATTGCA 659
consensus_14217#2 ------------------------------------------------------------
consensus_14217#1 GCTTTTGATGTTTAAATCATGGATCTGGGCTTTTGCAACGGTATCTTCAAGAACATTGCA 167
consensus_14217#0 TATAGCATGGGATGATGCTGGTTGTCTATGTCCTATTGGTGATTTGTTCAATTATGCTGC 719
consensus_14217#2 ------------------------------------------------------------
consensus_14217#1 TATAGCATGGGATGATGCTGGTTGTCTATGTCCTATTGGTGATTTGTTCAATTATACTGC 227
consensus_14217#0 TCCTAATGATGACAATTCATCAACGGATGAAGATAGAGATGATATGATGCATCAGGAGAC 779
consensus_14217#2 ------------------------------------------------------------
consensus_14217#1 TCCTAATGATGACAACTCATCAACGGATGAAGATAGAGATGATATGATGCATCAGGAGAC 287
consensus_14217#0 AAATAAGATGTTGGACCAGACAGATTTTGATTCATCTGAGAAGTTGACAGATGGGGGATA 839
consensus_14217#2 ------------------------------------------------------------
consensus_14217#1 AAATAGGATGTTGGACCAGACAGATTTTGATTCATCCGAGAAGTTGACAGATGGGGGATA 347
consensus_14217#0 TGAAGATGTTAATGAATACCGTCTGTATGCTCGGAAAAGATATAGAAAAGGAGAGCAGGT 899
consensus_14217#2 ------------------------------------------------------------
consensus_14217#1 TGAAGATGTTAATGAATACCGTCTGTATGCTCGGAAAAGATATAGAAAAGGAGAGCAGGT 407
consensus_14217#0 ------------------------------------------------------------
consensus_14217#2 ------------------------------------------------------------
consensus_14217#1 TTCTTCTGATATTTGCCTAAAATATATGCCCTTTTTTGTCTATAGGATGCTCATGTTCTC 467
consensus_14217#0 ------------------------------------------------------------
consensus_14217#2 ------------------------------------------------------------
consensus_14217#1 CCGTATCACATTATCTGCCTTCTTGTTGTTCTGTACTTTTGAATTAAACTTTGTCCTTTC 527
consensus_14217#0 --------ACTTCTGGCTTATGGAACGTATACAAACTTGGAACTTCTTGAGCATTATGGT 951
consensus_14217#2 ------------------------------------------------------------
consensus_14217#1 GTACAGGTACTTCTGGCTTATGGAACGTATACAAACTTGGAACTTCTTGAGCATTATGGT 587
consensus_14217#0 TTTCTTTTGGGTGAGAACCCTAATGAGAAAATCTACATTCCATTAG-ATTTGGATTTA-T 1009
consensus_14217#2 ------------------------------------TTCCCATTANGATTTGGATTTAAT 24
consensus_14217#1 TTTCTTTTGGGTGAGAACCCTAATGAGAAAATCTACATTCCATTAG-ATTTGGATTTA-T 645
* ****** *********** *
consensus_14217#0 GCATGATCGGTTCTTGGCC-AAGAGATTCCTTGTATATTCTGCCAAATGGACATCCCTCA 1068
consensus_14217#2 GCATGATCGGTTCTTGGCCCAAGAGATTCCTTGTATATTCTGCCAA-TGGACATCCCTCA 83
consensus_14217#1 GCATGATCGGTTCTTGGCC-AAGAGATTCCTTGTATATTTTGCCAAATGGACATCCCTCA 704
******************* ******************* ****** *************
consensus_14217#0 TTTGCATTGCTGTGTGCATTAAGGCTTTGGACAACTCCCAGAAATCGTCGGAAAGCCTTA 1128
consensus_14217#2 TTTGCATTGCTGTGTGCATTAAGGCTTTGGACAACTCCCAGAAATCGTCGGAAAGCCTTA 143
consensus_14217#1 TTTGCATTGCTGTGTGCATTAAGGCTTTGGACAACTCCCAGAAATCGTCGGAAAGCCTTA 764
************************************************************
consensus_14217#0 AGTCATCAGATCTACTCTGGATCATTGTTATCTGTTGAAAATGAGCTGGAGATTCTGAAA 1188
consensus_14217#2 AGTCATCAGATCTACTCTGGATCATTGTTAACTGTTGAAAATGAGCTGGAGATTCTGAAA 203
consensus_14217#1 AGTCATCAGATCTACTCTGGATCATTGTTATCTGTTGAAAATGAGCTGGAGATTTTGAAA 824
****************************** *********************** *****
consensus_14217#0 TGGTTGGTCAAGAAGTGCAAGGAAACTTTGCAGCAATTACCTACGACTATAGAATTTGAT 1248
consensus_14217#2 TGGTTGGTCAAGAAGTGCAAGGAAACTTTGCAGCAATTACCTACGACTATAGAATTTGAT 263
consensus_14217#1 TGGTTGGTCAAGAAGTGCAAGGAAACTTTGCAGCAATTACCTACGACTATAGAATTTGAT 884
************************************************************
consensus_14217#0 GATAATTTGCTCGTCCTTTTATGCAAGCTACAGAACAGCACTAGCTGCATAACAGAAATG 1308
consensus_14217#2 GATAATTTGCTCGTCCTTTTATGCAAGCTACAGAACAGCACTAGCTGCATAACAGAAATG 323
consensus_14217#1 GATAATTTGCTCGTCCTTTTATGCAAGCTACAGAACAGCACTAGCTGCATAACAGAAATG 944
************************************************************
consensus_14217#0 AACCGGTCAATCTTTGAGCAAGAATTTGCTCCATTCTTCAGATTTCATGGCTTCAAGCTG 1368
consensus_14217#2 AACCGGTCAATCTTTGAGCAAGAATTTGCTCCATTCTTCAGATTTCATGGCTTCAAGCTG 383
consensus_14217#1 AACCGGTCAACCTTTGAGCAAGAATTTGCTCCATTTTTCAGATTTCATGGCTTCAAGCTG 1004
********** ************************ ************************
consensus_14217#0 GATTGTTCTATACACAGTAAACTCCCAGTTCGTCTTCTACGATCCCTGGAAAGATGGGGA 1428
consensus_14217#2 GATTGTTCTATACACAGTAAACTCCCAGTTCGTCTTCTACGATCCCTGGAAAGATGGGGA 443
consensus_14217#1 GATTGTTTTATACACAGTAAACTCCCAGTTCGTTTTTTACGATCCCTGGAAAGATGGGGA 1064
******* ************************* ** ***********************
consensus_14217#0 TTAGCTGTCCAGTGGAGATGCAACTACAAAAGAACCCTAACCAAGTGTATTGTGCACTGT 1488
consensus_14217#2 TTAGCTGTCCAGTGGAGATGCAACTACAAAAGAACCCTAACCAAGTGTATTGTGCACTGT 503
consensus_14217#1 TTAGCTGTCCAGTGGAGATGCAACTACAAAAGAACCCTAACCAAGTGTATTGTGCACTGT 1124
************************************************************
consensus_14217#0 AAAAGTTTAGTTCACGAGCTTTCGTTGCAACAAAATCAACAATAGCTCAAAGATTCAAGC 1548
consensus_14217#2 AAAAGTTTAGTTCACGAGCTTTCGTTGCAACAAAATCAACAATAGCTCAAAGATTCAAGC 563
consensus_14217#1 AAAAGTTTAGTTCACGAGCTTTCGTTGCAACAAAATCAACAATAGCTCAAAGATTCAAGC 1184
************************************************************
consensus_14217#0 TAACTATGTTCTTTAGAATGCAGAAGTTCTTGATACAACAAAAATCAACAATAGCTCAAA 1608
consensus_14217#2 TAACTATGTTCTTTAGAATGCAGAAGTTCTTGATACAACAAAAATCAACAATAGCTCAAA 623
consensus_14217#1 TAACTATGTTCTTTAGAATGCAGAAGTTCTTGATACAACAAAAATCAACAATAGCTCAAA 1244
************************************************************
consensus_14217#0 GATTCAAGCTAATTATGTTTTTTTAATGCAGAAGTTCTTGATACATTTTTGCTTAACAGC 1668
consensus_14217#2 GATTCAAGCTAATTATGTTTTTTTAATGCAGAAGTTCTTGATACATTTTTGCTTAAAAAA 683
consensus_14217#1 GATC--ACCGGAGGAGG------------------------------------------- 1259
*** * * * * *
consensus_14217#0 ATGTCAAATTGTCAACACTCGATAGCAGGGCGAGGTGCTTTCATAGTTCCATGCATCACA 1728
consensus_14217#2 AAAAAAA----------------------------------------------------- 690
consensus_14217#1 ------------------------------------------------------------
consensus_14217#0 CTTTTTGGGGTTGCATAGTTTAAGCATAACAAGCGTTCTGTGGAATGCCTTCTGTGGAAT 1788
consensus_14217#2 ------------------------------------------------------------
consensus_14217#1 ------------------------------------------------------------
consensus_14217#0 GCCGCTGAGATACTGATAATTGATTA 1814
consensus_14217#2 --------------------------
consensus_14217#1 --------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||