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Oryza sativa
cluster # 14218 cluster # 14218       Sequences # 15       consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14218#0 length = 1462 sequences # 12  
consensus_14218#1 length = 524 sequences # 1  
 consensus_14218#2 length = 520 sequences # 1  
consensus_14218#3 length = 259 sequences # 1  
consensusID : consensus_14218#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 1462
fasta sequence 
                              [TTACACTCCCCCGTCACACTCTCCCGCTCCATCCCTGTCCACGAAAGCGCGCGCGGGTAAGATACGAGGCCGGGAGGGAAGAACGACCACGGCATGGCCACCGGTCTCTCCGGCGGCGCTATGACCAGCTTCGCCGTCAAGAAGCCGCTCCTCGCGGCCGCCGTGCGCCGCCGGTCGTGGCCCCCGCCGTCGGGCCGCGCGCTGCCGTTCTCGCCGCTCACGCGGACCCCGCGCAGCCGCGGGCTCGGGACCGTCACGTGCTTCGTGCCGCAGGGCACGGAGAGCCAGCAGGCCCCGGCTCCGTCCCCGCCGCCGACGGTGCCCGTGCCCGTGCCCTCGCTGGAGGAAGAGGCGGCTGCCGCGGCGGCGCGGCGCATCGCGGAGAGGAAGGCGCGGAAGCTGTCGGAGAGGCGGACGTACCTGGTTGCGGCCGTCATGTCCAGCCTCGGCTTCACGTCCATGGCCGTCGCCGCCGTGTACTACCGCTTCCATTGGCAACTGGAGGGCGGGGATGTGCCGATGACCGAGATGTTTGGCACGTTTGCGCTCTCCGTC-GGCGCAGCGGTTGGGATGGAGTTCTGGGCGCAGTGGGCG-CACCG-CTCGCTGTGGCACGCCTCCCTGTGGCACATGCACGAGTCGCACCACCGTGCGCGCGAGGGCCCGTTCGAGCTCAACGACGTGTTCGCCATCACCAACGCCGTGCCGGCCATCTCCCTCCTCGCCTACGGCTTCTTCCACC-GGGGCATCGTCCCCGGCCTCTGCTTCGGCGCGGGCCTCGGGATTACGCTGTTCGGCATGGCCTACATGTTCGTCCACGACGGCCTGGTCCACCGCCGCTTCCCCGTCGGCCCCATCGCGAATGTGCCCTACTTCCGGCGAGTGGCCGCGGCCCACAAGATACACCACACGGACAAGTTCGAGGGCGTACCGTATGGGCTGTTTCTTGGACCCAAGGAGCTGGAGGAGGTTGGTGGTCTGGAAGAGCTGGAGAAGGAGCTTGCGAGAATCAACCGGAGCTTGTGATTTTGACGGCGGCAATTGCAGCTAGCAAGACTGCGCCTGTCGAGCTAGCAGAATTGCCTTTGCCTTGCAAGATTTTTTGTATTTCTGGCCGCTTCGTCGACTCCATTAATTGTCGGTACCGGAGAGAAGGGGACTCCAGAAGCGGAAGCGC-TTCGAGTATACGACGATGTGGCAGCGGTGAAGAGCACAGTATATTTGTTTGATTGTGGCCTGTGGCATGCATGCGTCTCTGCGGCTGAACATTGTAAGGAGGATGTTCTGTGGGATGGTTATTCTTTGAATTTCACTGCGCCAACGTTTTTGGTGGAGA-CGTTGTGCGTCCAGTCCCCTGTCTTGTAAGAAGCACCACATTACTGTGTATA-ACACATGTTAGAGATTGTTAACCACTTCAATGAAACTAAAATAGGTGGTTGGCAACGAATG--TGAAATTTCAGGACTT]

[+] EMBL AK060559             [TTACACTCCCCCGTCACACTCTCCCGCTCCATCCCTGTCCACGAAAGCGCGCGCGGGTAAGATACGAGGCCGGGAGGGAAGAACGACCACGGCATGGCCACCGGTCTCTCCGGCGGCGCTATGACCAGCTTCGCCGTCAAGAAGCCGCTCCTCGCGGCCGCCGTGCGCCGCCGGTCGTGGCCCCCGCCGTCGGGCCGCGCGCTGCCGTTCTCGCCGCTCACGCGGACCCCGCGCAGCCGCGGGCTCGGGACCGTCACGTGCTTCGTGCCGCAGGGCACGGAGAGCCAGCAGGCCCCGGCTCCGTCCCCGCCGCCGACGGTGCCCGTGCCCGTGCCCTCGCTGGAGGAAGAGGCGGCTGCCGCGGCGGCGCGGCGCATCGCGGAGAGGAAGGCGCGGAAGCTGTCGGAGAGGCGGACGTACCTGGTTGCGGCCGTCATGTCCAGCCTCGGCTTCACGTCCATGGCCGTCGCCGCCGTGTACTACCGCTTCCATTGGCAACTGGAGGGCGGGGATGTGCCGATGACCGAGATGTTTGGCACGTTTGCGCTCTCCGTC GGCGCAGCGGTTGGGATGGAGTTCTGGGCGCAGTGGGCG CACCG CTCGCTGTGGCACGCCTCCCTGTGGCACATGCACGAGTCGCACCACCGTGCGCGCGAGGGCCCGTTCGAGCTCAACGACGTGTTCGCCATCACCAACGCCGTGCCGGCCATCTCCCTCCTCGCCTACGGCTTCTTCCACC GGGGCATCGTCCCCGGCCTCTGCTTCGGCGCGGGCCTCGGGATTACGCTGTTCGGCATGGCCTACATGTTCGTCCACGACGGCCTGGTCCACCGCCGCTTCCCCGTCGGCCCCATCGCGAATGTGCCCTACTTCCGGCGAGTGGCCGCGGCCCACAAGATACACCACACGGACAAGTTCGAGGGCGTACCGTATGGGCTGTTTCTTGGACCCAAGGAGCTGGAGGAGGTTGGTGGTCTGGAAGAGCTGGAGAAGGAGCTTGCGAGAATCAACCGGAGCTTGTGATTTTGACGGCGGCAATTGCAGCTAGCAAGACTGCGCCTGTCGAGCTAGCAGAATTGCCTTTGCCTTGCAAGATTTTTTGTATTTCTGGCCGCTTCGTCGACTCCATTAATTGTCGGTACCGGAGAGAAGGGGACTCCAGAAGCGGAAGCGC TTCGAGTATACGACGATGTGGCAGCGGTGAAGAGCACAGTATATTTGTTTGATTGTGGCCTGTGGCATGCATGCGTCTCTGCGGCTGAACATTGTAAGGAGGATGTTCTGTGGGATGGTTATTCTTTGAATTTCACTGCGCCAACGTTTTTGGTGGAGA CGTTGTGCGTCCAGTCCCCTGTCTTGTAAGAAGCACCACATTACTGTGTATA ACACATGTTAGAGATTGTTAACCACTTCAATGAAACTAAAATAGGTGGTTGGC                          ]
[+] EMBL CB681104             [    ACTCCCCCGTCACACTCTCCCGCTCCATCCCTGTCCACGAAAGCGCGCGCGGGTAAGATACGAGGCCGGGAGGGAAGAACGACCACGGCATGGCCACCGGTCTCTCCGGCGGCGCTATGACCAGCTTCGCCGTCAAGAAGCCGCTCCTCGCGGCCGCCGTGCGCCGCCGGTCGTGGCCCCCGCCGTCGGGCCGCGCGCTGCCGTTCTCGCCGCTCACGCGGACCCCGCGCAGCCGCGGGCTCGGGACCGTCACGTGCTTCGTGCCGCAGGGCACGGAGAGCCAGCAGGCCCCGGCTCCGTCCCCGCCGCCGACGGTGCCCGTGCCCGTGCCCTCGCTGGAGGAAGAGGCGGCTGCCGCGGCGGCGCGGCGCATCGCGGAGAGGAAGGCGCGGAAGCTGTCGGAGAGGCGGACGTACCTGGTTGCGGCCGTCATGTCCAGCCTCGGCTTCACGTCCATGGCCGTCGCCGCCGTGTACTACCGCTTCCATTGGCAACTGGAGGGCGGGGATGTGCCGATGACCGAGATGTTTGGCACGTTTGCGCTCTCCGTC GGCGCAGCGGTTGGGATGGAGTTCTGGGCGCAGTGGGCG CACCG CTCGCTGTGGCACGCCTCCCTGTGGCACATGCACGAGTCGCACCACCGTGCGCGCGAGGGCCCGTTCCAGCTCAACGACGTGTTCGCCATCACCAACGCCGTGCCGGACATCTCCCTCCTCGACTACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CB685961             [    ACTCCCCCGTCACACTCTCCCGCTCCATCCCTGTCCACGAAAGCGCGCGCGGGTAAGATACGAGGCCGGGAGGGAAGAACGACCACGGCATGGCCACCGGTCTCTCCGGCGGCGCTATGACCAGCTTCGCCGTCAAGAAGCCGCTCCTCGCGGCCGCCGTGCGCCGCCGGTCGTGGCCCCCGCCGTCGGGCCGCGCGCTGCCGTTCTCGCCGCTCACGCGGACCCCGCGCAGCCGCGGGCTCGGGACCGTCACGTGCTTCGTGCCGCAGGGCACGGAGAGCCAGCAGGCCCCGGCTCCGTCCCCGCCGCCGACGGTGCCCGTGCCCGTGCCCTCGCTGGAGGAAGAGGCGGCTGCCGCGGCGGCGCGGCGCATCGCGGAGAGGAAGGCGCGGAAGCTGTCGGAGAGGCGGACGTACCTGGTTGCGGCCGTCATGTCCAGCCTCGGCTTCACGTCCATGGCCGTCGCCGCCGTGTACTACCGCTTCCATTGGCAACTGGAGGGCGGGGATGTGCCGATGACCGAGATGTTTGGCACGTTTGCGCTCTCCGTC GGCGCAGCGGTTGGGATGGAGTTCTGGGCGCAGTGGGCG CACCG CTCGCTGTGGCACGCCTCCCTGTGGCACATGCACGAGTCGCACCACCGTGCGCGCGAGGGCCCGTTCGAGCTCAACGACGTGTTCGCCATCACCAACGCCGTGCCGGACATCTCCCTCCTCGCCTACGGCTTCTTCCACC GAGGCATCGTCCCCGGCCTCTGCTTCGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CB681078             [                 ACTCTCCCGCTCCATCCCTGTCCACAAAAGCGCGCGCGGGTAAGATACGAGGCCGGGAGGGAAGAACCACCACGGCATGGCCACCGGTCTCTCCGGCGGCGCTATGACCAGCTTCGCCGTCAAGAAGCCGCTCCTCGCGGCCGCCGTGCGCCGCCGGTCGTGGCCCCCGCCGTCGGGCCGCGCGCTGCCGTTCTCGCCGCTCACGCGGACCCCGCGCAGCCGCGGGCTCGGGACCGTCACGTGCTTCGTGCCGCAGGGCACGGAGAGCCAGCATGCCCCGGCTCCGTCCCCGCCGCCGACGGTGCCCGTGCCCGTGCCCTCGCTGGAGGAATAGGCGGCTGCCGCGGCGGCGCGGCGCATCGCGGAGAGGAAGGCGCGGAAGCTGTCGGAGAGGCGGACGTACCTGGTTGCGGCCGTCATGTCCAGCCTCTGCTTCACGTCCATGGCCGTCGCCGCCGTGTACTACCGCTTCCATTGGCAACTGGAGGGCGGGGATGTGCCCATGACCGACATGTTTGGCACGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CB647136             [                           TCCATCCCTGTCCACGAAAGCGCGCGCGGGTAAGATACGAGGCCGGGAGGGAAGAACGACCACGGCATGGCCACCGGTCTCTCCGGCGGCGCTATGACCAGCTTCGCCGTCAAGAAGCCGCTCCTCGCGGCCGCCGTGCGCCGCCGGTCGTGGCCCCCGCCGTCGGGCCGCGCGCTGCCGTTCTCGCCGCTCACGCGGACCCCGCGCAGCCGCGGGCTCGGGACCGTCACGTGCTTCATGCCGCAGGGCACGGAGAGCCAGCAGGCCCCGGCTCCGTCCCCCCCGCCGACAGTGCCCGTGCCCGTGCCCTCACTGGAAGAAGAAGTCGCTGCCGCGGAGGCGCAGCCCATCACGTAGAGGAAGGCGCGCTAGCTGTCGGAGAGGCGGACGTACCTGGTTGCGGCCGTCATGTCCAGCCTCGGCTTCACTTCCATGGCTGTCGCCGACGAGTACTACCCCTTCCATTGGCGACTGCAGGGAGGGGATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CB647135             [                            tcccCCTTGTCC CGAAAGCGCGCGCGGGTAAGATACGAGGCCGGGAGGGAAGAACGACCACGGCATGGCCACCGGTCTCTCCGGCGGCGCTATGACCAGCTTCGCCGTCAAGAAGCCGCTCCTCGCGGCCGCCGTGCGCCGCCGGTCGTGGCCCCCGCCGTCGGGCCGCGCGCTGCCGTTCTCGCCGCTCACGCGGACCCCGCGCAGGCGCGGGCTCGGGACCGTCACGTGCTTCGTGCCGCAGGGCACGGAGAGCCAGCAGGCCCCGGCTCCGTCCCCGCCGCCGACGGTGCCCGTGCCCGTGCCCTCGCTGGAGGAAGAGGCGGCTGCCGCGGCGGCGCGGTGCATCACGGAGAGGAAGGCGCGGAAGCTGTCTGAGAGGCGGACGTACCTGGTTGCGGCCGTCATGTCCAGCCTCGGCTTCACGTCCATGGCCGTCGCCGACGTGTACTACCGCTTCCATTGGCAAGTGGAGGGCGGGGATGTGCCGATGACCGAGATGTTTGGCACGTTTGCGCTCTCCTTCGGGCGCACCGGCTGGGATGGAGTTCTGGGCACCGTGGGCG CACCGCCTCGCTGTGGCACGCCTCCCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CB966601             [                                                                                                                                                       gcttGGGCG CGTGCGCCG CGGTCGTGG CCCCG CGTCGGGCCG GCGCTG CGTTCTCGCCGCTCACGCGGACCCCGCGCAGCCGCGGGCTCGGGACCGTCACGTGCTTCGTGCCGCAGGGCACGGAGAGCCAGCAGGCCCCGGCTCCGTCCCCGCCGCCGACGGTGCCCGTGCCCGTGCCCTCGCTGGAGGAAGAGGCGGCTGCCGCGGCGGCGCGGCGCATCGCGGAGAGGAAGGCGCGGAAGCTGTCGGAGAGGCGGACGTACCTGGTTGCGGCCGTCATGTCCAGCCTCGGCTTCACGTCCATGGCCGTCGCCGCCGTGTACTACCGCTTCCATTGGCAACTGGAGGGCGGGGATGTGCCGATGACCGAGATGTTTGGCACGTTTGCGCTCTCCGTC GGCGCAGCGGTTGGGATGGAGTTCTGGGCGCAGTGGGCGCCACCG CTCGCTGTGGCACGCCTCCCTGTGGCACATGCACGAGTCGCACCACCGTGCGCGCGAGGGCCCGTTCGAGCTCAACGACGTGTTCGCCATCACCAACGCCGTGCCGGCCATCTCCCTCCTCGCCTACGGCTTCTTCCACCGGGGGCATCGTCCCCGGCCTCTGCTTCGGCGCGGGCCTCGGGATTACGCTGTTCGGCATGGCCTACATGTTCGT CACGACGGCCTGGTCCA CGCCGCTTCCCCGT GGGCCCATCGGAAATGTG CCTAC TCCGGCGAGTGG CG GGGCCAC AGATACACC CACGGAC AG TCGA GGCGTACCG ATGG  TG TTC TGGA CCAA GA CTGAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CB685962             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TTCGGCATGGCCTACATGTTCGTCCACGACGGCCTGGTCCACCGCCGCTTCCCCGTCGGCCCCATCGCGAATGTGCCCTACTTCCGGCGAGTGGCCGCGGCCCACAAGATACACCACACGGACAAGTTCGAGGGCGTACCGTATGGGCTGTTTCTTGGACCCAAGGAGCTGGAGGAGGTTGGTGGTCTGGAAGAGCTGGAGAAGGAGCTTGCGAGAATCAACCGGAGCTTGTGATTTTGACGGCGGCAATTGCAGCTAGCAAGACTGCGCCTGTCGAGTTAGCAGAATTGCCTTTGCCTTGCAAGATTTTTTGTATTTCTGGCCGCTTGGTCGACTCCATTAATTGTCGGTACCGGAGAGAAGGGGACTCCAGAAGCGGAAGCGC TTCGAGTATACGACGATGTGGCAGCGGTGAAGAGCACAGTATATTTGTTTGATTGTGGCCTGTGGCATGCATGGGTATCTGGGGGTGAACATTGTAAGGAGGATGTTGTGTGGGATGGTTATTCTTTGAATTTCACTGTGCCAACGTTTTTGGTGGACATAGTTGTGCGTCCAGTCCCCTGTCTTATAAGAAGCTCCACATTCCTGTGTATACACACATTTTAGAGATTGTTAACCATTTCAATGAAACTAAAATAGGTGGTTGGCAACGAATG                  ]
[-] EMBL CB647137             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CGGTTTCCCGTCGGCCCCATTGCGAATGTGCCCTACTTCCGGCGAGTGGCCGCGGCCCACAAGATACACCACACGGACAAGTTTGAGGGGGTACCGTATGGGCTGTTTTTTGGACCCAAGGAGCTGGAGGAGGTTGGTGGTTTGGAAGAGCTGGAGAAGGAGCTTGCGAGAATCAACCGGAGCTTGTGATTTTGACGGCGGCAATTGCAGCTAGCAAGACTGCGCCTGTCGAGCTAGCAGAATTGCCTTTGCCTTGCAAGATTTTTTGTATTTTTGGCCGCTTCGTCGACTCCATTAATTGTCGGTACCGGAGAGAAGGGGACTCCAGAAGCGGAAGCGC TTCGAGTATACGACGATGTGGCAGCGGTGAAGAGCACAGTATATTTGTTTGATTGTGGCCTGTGGCATGCATGGGTTTTTGGGGGTGAACATTGTAAGGAGGATGTTTTGTGGGATGGTTATTTTTTGAATTTCACTGCGCCAACGTTTTTGGTGGAGA CGTTGTGCGTCCAGTCCCCTGTTTTGTAAGAAGCCCCCCATTACTGTGTATA ACACATGTTAGAGATTGTTAACCCCTTCAATGAAACTAAAATAG                                   ]
[-] EMBL CB681079             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TTCCCCGTCGGCCCCATCGCGAATGTGCCCTACTTCCGGCGAGTGGCCGCGGCCCACAAGATACACCACACGGACAAGTTCGAGGGCGTACCGTATGGGCTGTTTCTTGGACCCAAGGAGCTGGAGGAGGTTGGTGGTCTGGAAGAGCTGGAGAAGGAGCTTGCGAGAATCAACCGGAGCTTGTGATTTTGACGGCGGCAATTGCAGCTAGCAAGACTGCGCCTGTCGAGCTAGCAGAATTGCCTTTGCCTTGCAAGATTTTTTGTATTTCTGGCCGCTTCGTCGACTCCATTAATTGTCGGTACCGGAGAGAAGGGGACTCCAGAAGCGGAAGCGC TTCGAGTATACGACGATGTGGCAGCGGTGAAGAGCACAGTATATTTGTTTGATTGTGGCCTGTGGCATGCATGCGTCTCTGCGGCTGAACATTGTAAGGAGGATGTTCTGTGGGATGGTTATTCTTTGAATTTCACTGCGCCAACGTTTTTGGTGGAGA CGTTGTGCGTCCAGTCCCCTGTCTTGTAAGAAGCACCACATTACTGTGTATA ACACATGTTAGAGATTGTTAACCACTTCAATGAAACTAAAATAGGTGGTTGGCAA  AAGGGCTGAAATTTCAGGACTT]
[+] EMBL OSC0121              [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GATACACCACACGGACAAGTTCGAGGGCGTACCGTATGGGCTGTTTCTTGGACCCAAGGAGCTGGAGGAGGTTGGTGGTCTGGAAGAGCTGGAGAAGGAGCTTGCGAGAATCAACCGGAGCTTGTGATTTTAACGGCGGCAATTGCAGCTAGCAAGACTGCGCCTGTCGAGCTAGCAGAATTGCCTTTGCCTTGCAAGATTTTTTGTATTTCTGGCCGCTTCGTCGACTCCATTAATTGTCGGTACCGGAGAGAAGGGGACTCCAGAAGCGGAAG GCTTTCGAGTATACGACGATGTGGCAGCGGTGAAGAGCACAGTATATTTGTTTGATTGTGGCCTGTGGCATGCATGCGTCTCTGCGGCTGAACATTGTAAGGAGGATGTTCTNTGGGATGGTAATCCTTTGAATTTCACTGCGCCAACGTTTTTGGTGGAGAgg                                                                                                                                   ]
[+] EMBL CF569122             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GAGAAGGAGCTTGCGAGAATCAACCGGAGCTTGTGATTTTGACGGCGGCAATTGCAGCTAGCAAGACTGCGCCTGTCGAGCTAGCAGAATTGCCTTTGCCTTGCAAGATTTTTTGTATTTCTGGCCGCTTCGTCGACTCCATTAATTGTCGGTACCGGAGAGAAGGGGACTCCAGAAGCGGAAGCGC TTCGAGTATACGACGATGTGGCAGCGGTGAAGAGCACAGTATATTTGTTTGATTGTGGCCTGTGGCATGCATGCGTCTCTGCGGCTGAACATTGTAAGGAGGATGTTCTGTGGGATGGTTATTCTTTGAATTTCACTGCGCCAACGTTTTTGGTGGAGA CGTTGTGCGTCCAGTCCCCTGTCTTGTAAGAAGCACCACATTACTGTGTATA ACACATGTTAGAGATTGTTAACCACTTCAATGAAACTAAAATAGGTGGTTGGC                          ]




>consensus_14218#0
TTACACTCCCCCGTCACACTCTCCCGCTCCATCCCTGTCCACGAAAGCGCGCGCGGGTAA
GATACGAGGCCGGGAGGGAAGAACGACCACGGCATGGCCACCGGTCTCTCCGGCGGCGCT
ATGACCAGCTTCGCCGTCAAGAAGCCGCTCCTCGCGGCCGCCGTGCGCCGCCGGTCGTGG
CCCCCGCCGTCGGGCCGCGCGCTGCCGTTCTCGCCGCTCACGCGGACCCCGCGCAGCCGC
GGGCTCGGGACCGTCACGTGCTTCGTGCCGCAGGGCACGGAGAGCCAGCAGGCCCCGGCT
CCGTCCCCGCCGCCGACGGTGCCCGTGCCCGTGCCCTCGCTGGAGGAAGAGGCGGCTGCC
GCGGCGGCGCGGCGCATCGCGGAGAGGAAGGCGCGGAAGCTGTCGGAGAGGCGGACGTAC
CTGGTTGCGGCCGTCATGTCCAGCCTCGGCTTCACGTCCATGGCCGTCGCCGCCGTGTAC
TACCGCTTCCATTGGCAACTGGAGGGCGGGGATGTGCCGATGACCGAGATGTTTGGCACG
TTTGCGCTCTCCGTCGGCGCAGCGGTTGGGATGGAGTTCTGGGCGCAGTGGGCGCACCGC
TCGCTGTGGCACGCCTCCCTGTGGCACATGCACGAGTCGCACCACCGTGCGCGCGAGGGC
CCGTTCGAGCTCAACGACGTGTTCGCCATCACCAACGCCGTGCCGGCCATCTCCCTCCTC
GCCTACGGCTTCTTCCACCGGGGCATCGTCCCCGGCCTCTGCTTCGGCGCGGGCCTCGGG
ATTACGCTGTTCGGCATGGCCTACATGTTCGTCCACGACGGCCTGGTCCACCGCCGCTTC
CCCGTCGGCCCCATCGCGAATGTGCCCTACTTCCGGCGAGTGGCCGCGGCCCACAAGATA
CACCACACGGACAAGTTCGAGGGCGTACCGTATGGGCTGTTTCTTGGACCCAAGGAGCTG
GAGGAGGTTGGTGGTCTGGAAGAGCTGGAGAAGGAGCTTGCGAGAATCAACCGGAGCTTG
TGATTTTGACGGCGGCAATTGCAGCTAGCAAGACTGCGCCTGTCGAGCTAGCAGAATTGC
CTTTGCCTTGCAAGATTTTTTGTATTTCTGGCCGCTTCGTCGACTCCATTAATTGTCGGT
ACCGGAGAGAAGGGGACTCCAGAAGCGGAAGCGCTTCGAGTATACGACGATGTGGCAGCG
GTGAAGAGCACAGTATATTTGTTTGATTGTGGCCTGTGGCATGCATGCGTCTCTGCGGCT
GAACATTGTAAGGAGGATGTTCTGTGGGATGGTTATTCTTTGAATTTCACTGCGCCAACG
TTTTTGGTGGAGACGTTGTGCGTCCAGTCCCCTGTCTTGTAAGAAGCACCACATTACTGT
GTATAACACATGTTAGAGATTGTTAACCACTTCAATGAAACTAAAATAGGTGGTTGGCAA
CGAATGTGAAATTTCAGGACTT

consensusID : consensus_14218#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 524
fasta sequence 
                              [TCACCTGTTCGGGATGGCGTACATGTTCGTCCACGACGGCCTGGTCCACCGCCGCTTCCCGGTGGGGCCCATCGCCAACGTGCCCTACTTCCGGCGGGTCGCCGCCGCCCACCAGATACATCACATGGACAAGTTCGAAGGTGTGCCATATGGGCTGTTCCTTGGTCCCAAGGAGCTGGAGGAGGTGGGTGGGATTGAGGAGCTGGAGAAGGAGATCAAGAGGAGGATTAAGAGGAAAGAGACCTTAGATGCGATCCATGAGAGCTACTTATCACACGTTTTTTTCTTTTTATTTGCTGTCATCTCTTATTAGTTTTTTGCTTCAGTGGCAATTGTAGCCTTGTAATATGCTTTTCTGTCCTGTTAATAGAAGAATAATTTAGATAGATATCTGGAAGCTCATTTGGACGGTGGAGCACACAGGTATTAGAAATGATGTGCTGGGGCTGAATGGCTGATGCTTTTGCTAGTACTGCTGGTAATGATATATATTAATCAGTACCATTCTGAATTTAAAAAAAAAA]

[+] EMBL BI802379             [TCACCTGTTCGGGATGGCGTACATGTTCGTCCACGACGGCCTGGTCCACCGCCGCTTCCCGGTGGGGCCCATCGCCAACGTGCCCTACTTCCGGCGGGTCGCCGCCGCCCACCAGATACATCACATGGACAAGTTCGAAGGTGTGCCATATGGGCTGTTCCTTGGTCCCAAGGAGCTGGAGGAGGTGGGTGGGATTGAGGAGCTGGAGAAGGAGATCAAGAGGAGGATTAAGAGGAAAGAGACCTTAGATGCGATCCATGAGAGCTACTTATCACACGTTTTTTTCTTTTTATTTGCTGTCATCTCTTATTAGTTTTTTGCTTCAGTGGCAATTGTAGCCTTGTAATATGCTTTTCTGTCCTGTTAATAGAAGAATAATTTAGATAGATATCTGGAAGCTCATTTGGACGGTGGAGCACACAGGTATTAGAAATGATGTGCTGGGGCTGAATGGCTGATGCTTTTGCTAGTACTGCTGGTAATGATATATATTAATCAGTACCATTCTGAATTTAAAAAAAAAA]




>consensus_14218#1
TCACCTGTTCGGGATGGCGTACATGTTCGTCCACGACGGCCTGGTCCACCGCCGCTTCCC
GGTGGGGCCCATCGCCAACGTGCCCTACTTCCGGCGGGTCGCCGCCGCCCACCAGATACA
TCACATGGACAAGTTCGAAGGTGTGCCATATGGGCTGTTCCTTGGTCCCAAGGAGCTGGA
GGAGGTGGGTGGGATTGAGGAGCTGGAGAAGGAGATCAAGAGGAGGATTAAGAGGAAAGA
GACCTTAGATGCGATCCATGAGAGCTACTTATCACACGTTTTTTTCTTTTTATTTGCTGT
CATCTCTTATTAGTTTTTTGCTTCAGTGGCAATTGTAGCCTTGTAATATGCTTTTCTGTC
CTGTTAATAGAAGAATAATTTAGATAGATATCTGGAAGCTCATTTGGACGGTGGAGCACA
CAGGTATTAGAAATGATGTGCTGGGGCTGAATGGCTGATGCTTTTGCTAGTACTGCTGGT
AATGATATATATTAATCAGTACCATTCTGAATTTAAAAAAAAAA

consensusID : consensus_14218#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 520
fasta sequence 
                              [TCTCCCTCCTCGCCTACGGCCTCCTCAACCGCGGCCTCCTCCCCGGCCTCTGCTTCGGCGCGGGGCTTGGGATTACGCTGTTCGGGATGGCGTACATGTTCGTCCACGACGGCCTGGTCCACCGGCGCTTCCCCGTGGGGCCCATCGAGAACGTGCCCTACTTCCGCCGAGTTGCTGCCGCCCACCAGATACATCACACGGACAAGTTCGAAGGCGTGCCCTACGGCCTGTTCCTCGGACCCAAGGAGTTGGAGGAGGTGGGTGGGACTGAGGAGCTGGACAAGGAGATCAAGAAGAGGATCAAGAGGAAGGAGGCCATGGACGCCATCAGATGAGAGCGAGAGTACTGCACATGCCATGAGAGCTACTACTAGCCTGCTGCTACCATTTTCGATCGCTTTTGTTTTGGCTTTTCCTGATTTTATGTTTATTTTGATGTAGATAGCTGTCGGTGTATGTACTGTGTAGAGTGCCGATACTTAATCTGTCCTTTTGTTAATAGAAGAGGAATAATCCATTA]

[-] EMBL CB673615             [TCTCCCTCCTCGCCTACGGCCTCCTCAACCGCGGCCTCCTCCCCGGCCTCTGCTTCGGCGCGGGGCTTGGGATTACGCTGTTCGGGATGGCGTACATGTTCGTCCACGACGGCCTGGTCCACCGGCGCTTCCCCGTGGGGCCCATCGAGAACGTGCCCTACTTCCGCCGAGTTGCTGCCGCCCACCAGATACATCACACGGACAAGTTCGAAGGCGTGCCCTACGGCCTGTTCCTCGGACCCAAGGAGTTGGAGGAGGTGGGTGGGACTGAGGAGCTGGACAAGGAGATCAAGAAGAGGATCAAGAGGAAGGAGGCCATGGACGCCATCAGATGAGAGCGAGAGTACTGCACATGCCATGAGAGCTACTACTAGCCTGCTGCTACCATTTTCGATCGCTTTTGTTTTGGCTTTTCCTGATTTTATGTTTATTTTGATGTAGATAGCTGTCGGTGTATGTACTGTGTAGAGTGCCGATACTTAATCTGTCCTTTTGTTAATAGAAGAGGAATAATCCATTA]




>consensus_14218#2
TCTCCCTCCTCGCCTACGGCCTCCTCAACCGCGGCCTCCTCCCCGGCCTCTGCTTCGGCG
CGGGGCTTGGGATTACGCTGTTCGGGATGGCGTACATGTTCGTCCACGACGGCCTGGTCC
ACCGGCGCTTCCCCGTGGGGCCCATCGAGAACGTGCCCTACTTCCGCCGAGTTGCTGCCG
CCCACCAGATACATCACACGGACAAGTTCGAAGGCGTGCCCTACGGCCTGTTCCTCGGAC
CCAAGGAGTTGGAGGAGGTGGGTGGGACTGAGGAGCTGGACAAGGAGATCAAGAAGAGGA
TCAAGAGGAAGGAGGCCATGGACGCCATCAGATGAGAGCGAGAGTACTGCACATGCCATG
AGAGCTACTACTAGCCTGCTGCTACCATTTTCGATCGCTTTTGTTTTGGCTTTTCCTGAT
TTTATGTTTATTTTGATGTAGATAGCTGTCGGTGTATGTACTGTGTAGAGTGCCGATACT
TAATCTGTCCTTTTGTTAATAGAAGAGGAATAATCCATTA

consensusID : consensus_14218#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 259
fasta sequence 
                              [GAGCNCAGTATATTTGTTTGATTGTGGCCTGTGGCATGCATGCGTCTCTGCGGCTGAACATTGTAAGGAGGATGTTCTGTGGGATGGTTATTCTTTGAATTTCACTGCGCCAACGTTTTTGGTGGAGACGTTGTGCGTCCAGTCCCCTGTCTTGTAAGAAGCACCACATTACTGTGTATAACACATGTTAGAGATTGTTAACCACTTCAATGAAACTAAAATAGGTGGTTGGCAACAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU096961             [GAGCNCAGTATATTTGTTTGATTGTGGCCTGTGGCATGCATGCGTCTCTGCGGCTGAACATTGTAAGGAGGATGTTCTGTGGGATGGTTATTCTTTGAATTTCACTGCGCCAACGTTTTTGGTGGAGACGTTGTGCGTCCAGTCCCCTGTCTTGTAAGAAGCACCACATTACTGTGTATAACACATGTTAGAGATTGTTAACCACTTCAATGAAACTAAAATAGGTGGTTGGCAACAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_14218#3
GAGCNCAGTATATTTGTTTGATTGTGGCCTGTGGCATGCATGCGTCTCTGCGGCTGAACA
TTGTAAGGAGGATGTTCTGTGGGATGGTTATTCTTTGAATTTCACTGCGCCAACGTTTTT
GGTGGAGACGTTGTGCGTCCAGTCCCCTGTCTTGTAAGAAGCACCACATTACTGTGTATA
ACACATGTTAGAGATTGTTAACCACTTCAATGAAACTAAAATAGGTGGTTGGCAACAAAA
AAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14218#0      TTACACTCCCCCGTCACACTCTCCCGCTCCATCCCTGTCCACGAAAGCGCGCGCGGGTAA 60
consensus_14218#3      ------------------------------------------------------------
consensus_14218#1      ------------------------------------------------------------
consensus_14218#2      ------------------------------------------------------------
                                                                                   

consensus_14218#0      GATACGAGGCCGGGAGGGAAGAACGACCACGGCATGGCCACCGGTCTCTCCGGCGGCGCT 120
consensus_14218#3      ------------------------------------------------------------
consensus_14218#1      ------------------------------------------------------------
consensus_14218#2      ------------------------------------------------------------
                                                                                   

consensus_14218#0      ATGACCAGCTTCGCCGTCAAGAAGCCGCTCCTCGCGGCCGCCGTGCGCCGCCGGTCGTGG 180
consensus_14218#3      ------------------------------------------------------------
consensus_14218#1      ------------------------------------------------------------
consensus_14218#2      ------------------------------------------------------------
                                                                                   

consensus_14218#0      CCCCCGCCGTCGGGCCGCGCGCTGCCGTTCTCGCCGCTCACGCGGACCCCGCGCAGCCGC 240
consensus_14218#3      ------------------------------------------------------------
consensus_14218#1      ------------------------------------------------------------
consensus_14218#2      ------------------------------------------------------------
                                                                                   

consensus_14218#0      GGGCTCGGGACCGTCACGTGCTTCGTGCCGCAGGGCACGGAGAGCCAGCAGGCCCCGGCT 300
consensus_14218#3      ------------------------------------------------------------
consensus_14218#1      ------------------------------------------------------------
consensus_14218#2      ------------------------------------------------------------
                                                                                   

consensus_14218#0      CCGTCCCCGCCGCCGACGGTGCCCGTGCCCGTGCCCTCGCTGGAGGAAGAGGCGGCTGCC 360
consensus_14218#3      ------------------------------------------------------------
consensus_14218#1      ------------------------------------------------------------
consensus_14218#2      ------------------------------------------------------------
                                                                                   

consensus_14218#0      GCGGCGGCGCGGCGCATCGCGGAGAGGAAGGCGCGGAAGCTGTCGGAGAGGCGGACGTAC 420
consensus_14218#3      ------------------------------------------------------------
consensus_14218#1      ------------------------------------------------------------
consensus_14218#2      ------------------------------------------------------------
                                                                                   

consensus_14218#0      CTGGTTGCGGCCGTCATGTCCAGCCTCGGCTTCACGTCCATGGCCGTCGCCGCCGTGTAC 480
consensus_14218#3      ------------------------------------------------------------
consensus_14218#1      ------------------------------------------------------------
consensus_14218#2      ------------------------------------------------------------
                                                                                   

consensus_14218#0      TACCGCTTCCATTGGCAACTGGAGGGCGGGGATGTGCCGATGACCGAGATGTTTGGCACG 540
consensus_14218#3      ------------------------------------------------------------
consensus_14218#1      ------------------------------------------------------------
consensus_14218#2      ------------------------------------------------------------
                                                                                   

consensus_14218#0      TTTGCGCTCTCCGTCGGCGCAGCGGTTGGGATGGAGTTCTGGGCGCAGTGGGCGCACCGC 600
consensus_14218#3      ------------------------------------------------------------
consensus_14218#1      ------------------------------------------------------------
consensus_14218#2      ------------------------------------------------------------
                                                                                   

consensus_14218#0      TCGCTGTGGCACGCCTCCCTGTGGCACATGCACGAGTCGCACCACCGTGCGCGCGAGGGC 660
consensus_14218#3      ------------------------------------------------------------
consensus_14218#1      ------------------------------------------------------------
consensus_14218#2      ------------------------------------------------------------
                                                                                   

consensus_14218#0      CCGTTCGAGCTCAACGACGTGTTCGCCATCACCAACGCCGTGCCGGCCATCTCCCTCCTC 720
consensus_14218#3      ------------------------------------------------------------
consensus_14218#1      ------------------------------------------------------------
consensus_14218#2      ------------------------------------------------------------
                                                                                   

consensus_14218#0      GCCTACGGCTTCTTCCACCGGGGCATCGTCCCCGGCCTCTGCTTCGGCGCGGGCCTCGGG 780
consensus_14218#3      ------------------------------------------------------------
consensus_14218#1      ------------------------------------------------------------
consensus_14218#2      ------------------------------------------------------------
                                                                                   

consensus_14218#0      ATTACGCTGTTCGGCATGGCCTACATGTTCGTCCACGACGGCCTGGTCCACCGCCGCTTC 840
consensus_14218#3      ------------------------------------------------------------
consensus_14218#1      ------------------------------------------------------------
consensus_14218#2      ------------------------------------------------------------
                                                                                   

consensus_14218#0      CCCGTCGGCCCCATCGCGAATGTGCCCTACTTCCGGCGAGTGGCCGCGGCCCACAAGATA 900
consensus_14218#3      ------------------------------------------------------------
consensus_14218#1      ------------------------------------------------------------
consensus_14218#2      ------------------------------------------------------------
                                                                                   

consensus_14218#0      CACCACACGGACAAGTTCGAGGGCGTACCGTATGGGCTGTTTCTTGGACCCAAGGAGCTG 960
consensus_14218#3      ------------------------------------------------------------
consensus_14218#1      ------------------------------------------------------------
consensus_14218#2      ------------------------------------------------------------
                                                                                   

consensus_14218#0      GAGGAGGTTGGTGGTCTGGAAGAGCTGGAGAAGGAGCTTGCGAGAATCAACCGGAGCTTG 1020
consensus_14218#3      ------------------------------------------------------------
consensus_14218#1      ------------------------------------------------------------
consensus_14218#2      ------------------------------------------------------------
                                                                                   

consensus_14218#0      TGATTTTGACGGCGGCAATTGCAGCTAGCAAGACTGCGCCTGTCGAGCTAGCAGAATTGC 1080
consensus_14218#3      ------------------------------------------------------------
consensus_14218#1      ------------------------------------------------------------
consensus_14218#2      ------------------------------------------------------------
                                                                                   

consensus_14218#0      CTTTGCCTTGCAAGATTTTTTGTATTTCTGGCCGCTTCGTCGACTCCATTAATTGTCGGT 1140
consensus_14218#3      ------------------------------------------------------------
consensus_14218#1      ------------------------------------------------------------
consensus_14218#2      -------------------------------------------TCTCCCTCCTCGCCTAC 17
                                                                                   

consensus_14218#0      ACCGGAGAGAAGGGGACTCCAGAAGCGGAAGCGCTTCGAGTATACGACGATGTGGCAGCG 1200
consensus_14218#3      ------------------------------------------------------------
consensus_14218#1      -------------------------------------------------------TCAC- 4
consensus_14218#2      GGCCTCCTCAACCGCGGCCTCCTCCCCGGCCTCTGCTTCGGCGCGGGGCTTGGGATTACG 77
                                                                                   

consensus_14218#0      GTGAAGAGCACAGTATATTTGTTTG---ATTGTGGCCTGTGGCATGCATGCGTCTCTGCG 1257
consensus_14218#3      -----GAGCNCAGTATATTTGTTTG---ATTGTGGCCTGTGGCATGCATGCGTCTCTGCG 52
consensus_14218#1      CTGTTCGGGATGGCGTACATGTTCGTCCACGACGGCCTGGTCCACCGCCGCTTCCCGGTG 64
consensus_14218#2      CTGTTCGGGATGGCGTACATGTTCGTCCACGACGGCCTGGTCCACCGGCGCTTCCCCGTG 137
                              *    *  **  **** *   *    ******   **     ** ** * * *

consensus_14218#0      GCTGAACATTGTAAGGAGGATGTTCTGTGGGATGGTTATT-----CTTTGAATTTCACTG 1312
consensus_14218#3      GCTGAACATTGTAAGGAGGATGTTCTGTGGGATGGTTATT-----CTTTGAATTTCACTG 107
consensus_14218#1      GG-GCCCATCGCCAACGTGCCCTACTTCCGGCGGGTCGCCGCCGCCCACCAGATACATCA 123
consensus_14218#2      GG-GCCCATCGAGAACGTGCCCTACTTCCGCCGAGTTGCTGCCGCCCACCAGATACATCA 196
                       *  *  *** *  *    *   * **   *    **         *    *  * **   

consensus_14218#0      CGCCAACGTTTTTGGTGGAGACGTTGTGCGTCCAGTCCCCTGTCTTGTAAGAA--GCACC 1370
consensus_14218#3      CGCCAACGTTTTTGGTGGAGACGTTGTGCGTCCAGTCCCCTGTCTTGTAAGAA--GCACC 165
consensus_14218#1      CATGGACAAGTTCGAAGGTG-TGCCATATGGGCTGTTCCTTGGTCCCAAGGAGCTGGAGG 182
consensus_14218#2      CACGGACAAGTTCGAAGGCG-TGCCCTACGGCCTGTTCCTCGGACCCAAGGAGTTGGAGG 255
                       *    **   ** *  ** *  *   *  *  * ** **  *      * **   * *  

consensus_14218#0      ACATTACTGTGTATAACACATGTTAGAGATTGTTAACCACTTCAATGAAACTAAAATAGG 1430
consensus_14218#3      ACATTACTGTGTATAACACATGTTAGAGATTGTTAACCACTTCAATGAAACTAAAATAGG 225
consensus_14218#1      AGGTGGGTGGGATTGAGGAGCTGGAGAAGGAGATCAAGAGGAGGATTAAGAGGAAAGAGA 242
consensus_14218#2      AGGTGGGTGGGACTGAGGAGCTGGACAAGGAGATCAAGAAGAGGATCAAGAGGAAGGAGG 315
                       *  *   ** *  * *        * *    * * *  *     ** **    **  ** 

consensus_14218#0      TGGTTGGCAACGAATGTGAAATTTCAGGACTT---------------------------- 1462
consensus_14218#3      TGGTTGGCAACAAAAAAAAAAAAAAAAAAAAAAA-------------------------- 259
consensus_14218#1      CCTTAGATGCGATCC-ATGAGAGCTACTTATCACACGTTTTTTTCTTTTTATTTGCTGTC 301
consensus_14218#2      CCATGGACGCCATCAGATGAGAGCGA--------GAGTACTGCACATGCCATGAG----- 362
                          * *             *     *                                  

consensus_14218#0      ------------------------------------------------------------
consensus_14218#3      ------------------------------------------------------------
consensus_14218#1      ATCTCTTATTAGTTTTTTGCT-TCAGTGGCAATTGTAGCCTTGTAATATGCTTTTCTGTC 360
consensus_14218#2      AGCTACTACTAGCCTGCTGCTACCATTTTCGATCG----CTTTTGTTTTGGCTTTTCCTG 418
                                                                                   

consensus_14218#0      ------------------------------------------------------------
consensus_14218#3      ------------------------------------------------------------
consensus_14218#1      CTGTTAATAGAAGAATAATTTAGATAGATATCTGGAAGCTCATTTGGACGGTGGAGCACA 420
consensus_14218#2      ATTTTATGTTTATTTTGATGTAGATAGCTGTCGG------TGTATGTACTGTGTAGAGTG 472
                                                                                   

consensus_14218#0      ------------------------------------------------------------
consensus_14218#3      ------------------------------------------------------------
consensus_14218#1      CAGGTATTAGAAATGATGTGCTGGGGCTGAATGGCTGATGCTTTTGCTAGTACTGCTGGT 480
consensus_14218#2      CCGATACTTAATCTGTCCTTTTGTTAATAGAAGAGGAATAATCC-ATTA----------- 520
                                                                                   

consensus_14218#0      --------------------------------------------
consensus_14218#3      --------------------------------------------
consensus_14218#1      AATGATATATATTAATCAGTACCATTCTGAATTTAAAAAAAAAA 524
consensus_14218#2      --------------------------------------------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)