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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14220#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1875 fasta sequence
[CTCTCCGCATCCGCCTCCGCAACTGCAAACCGCTGCGGTCTCGGAAACCCTAGCTCTCGCCCCCTCCCCTCCCTCTCCGCCCGTCGCCGCGCGGGTCGCCTCCTCCTCTCCGCCGCCACCGCCGCCGCTGACATGGGCTCCGATGCGGACATGGAGGATTACGGGTTCGAGTACTCCGACGACGAGCCGGAGGAGCAGGATGTTGACATCGAGAACCAGTACTACAACTCCAAAGGTATGGTTGAGACAGACCCTGAGGGTGCACTTGCTGGCTTCGATCAAGTAGTACGTATGGAGCCTGAAAAGGCTGAATGGGGTTTCAAAGCTCTGAAACAAACAGTGAAGCTGTATTATAAGCTTGGGAAGTACAAAGAAATGATGGATGCCTATA-GGGAGATGTTGACATACATCAAATCTGCTGTGACACGTAACTACAGTGAGAAATGTATAAACAACATTAT-GGATTTTGTCTCCGGATCAGCTAGTCAAAACTTCTCTCTTCTGCAAGAGTTCTACCAGACAACACTGAAAGCACTTGAAGAGGCAAAGAATGAGAGATTAT-GGTTTAAGACAAACCTGAAGCTTTGCAAAATTTGGTTTGACATGGGGGAGTATGGCCGGATGAGCAAGATACTGAAGGAGCTGCATAAATCTTGTCAAAGAGAAGATGGTTCTGATGATCAGAAGAAAGGCACACAACTTTTGGAAGTCTATGCTA-TTGAGAT-CCAAATGTACACTGAAACAAAGAACAACAAAAAATTGAAGGAACTATATACAAAAGCTCTTTCCATCAAATCAGCGATACCTCATCCAAGAATCATGGGTATAATTCGTGAATGTGGTGGAAAGATGCACATGGCTGAGAGGCAATGGGCAGATGCTGCAACTGATTTCTTTGAAGCATTCAAAAACTATGATGAAGCTGGCAATCCGCGGAGAATTCAATGCCTGAAATATCTTGTTCTTGCAAATATGTTGATGGAATCTGAAGTGAATCCCTTTGATGGGCAAGAGGCTAAGCCGTACAAAAATGATCCTGAGATCCTCGCCATGACAAACTTGATTGCAGCATATCAGAAGAATGACATCATGGAATTTGAAAAGATTCTAAAGAGCAACAGAAGAACAATAATGGACGATCCTTTCATCCGTAATTATATTGAGGACCTATTGAAGAACATCAGAACTCAAGTTCTGCTCAAGCTTAT-TAAGCCATATACTAGAATCAGGATTCCATTCATTTCACAGGAGCTAAATTTCCCAGAAAAGGATGTCGAGCAGCTCTTGGTCTCACTCATTCTGGATAACCGAATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAGGTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCTGAAGAACATCTACCAAACGGTGTCCAACAGAGTTGGGTGAGAGAGATAGCAGGATGCCTGGGCTGCACTGCGCTTGGCACCTGCTTGCACGTTTTGTTGTGGTGGGTAAATGCAGCGAGTGTTTGGTGCGTGCATTACATTTGAGATAGGCTCTTGGATAGGTAAAGAAAAAAACAGTCTCGTGTATTAAACATGGTACTCTTTTGCGCGCCATGTGAAGATGCTGGGATTTTGTCCTGAACTGAATCTATCTGCAAATTCCAACCCCTCTGAAACTATACTAGCGTCAATGGCTCGAAACTTTTGGTTTTGTTGGCATTGCCGCACTAGCAAATTTTGGTATGGTAGAGAGAATGTTTGGTTCCGTGTAAAATATGCACCAGGTACAAGACATACTGCTAATATTGTGCCGTTGCCGAGTTCTGATAGTGTTGCCAACCAATCACTTTCAAATCAAAAAAAN]
[+] EMBL AK107911 [CTCTCCGCATCCGCCTCCGCAACTGCAAACCGCTGCGGTCTCGGAAACCCTAGCTCTCGCCCCCTCCCCTCCCTCTCCGCCCGTCGCCGCGCGGGTCGCCTCCTCCTCTCCGCCGCCACCGCCGCCGCTGACATGGGCTCCGATGCGGACATGGAGGATTACGGGTTCGAGTACTCCGACGACGAGCCGGAGGAGCAGGATGTTGACATCGAGAACCAGTACTACAACTCCAAAGGTATGGTTGAGACAGACCCTGAGGGTGCACTTGCTGGCTTCGATCAAGTAGTACGTATGGAGCCTGAAAAGGCTGAATGGGGTTTCAAAGCTCTGAAACAAACAGTGAAGCTGTATTATAAGCTTGGGAAGTACAAAGAAATGATGGATGCCTATA GGGAGATGTTGACATACATCAAATCTGCTGTGACACGTAACTACAGTGAGAAATGTATAAACAACATTAT GGATTTTGTCTCCGGATCAGCTAGTCAAAACTTCTCTCTTCTGCAAGAGTTCTACCAGACAACACTGAAAGCACTTGAAGAGGCAAAGAATGAGAGATTAT GGTTTAAGACAAACCTGAAGCTTTGCAAAATTTGGTTTGACATGGGGGAGTATGGCCGGATGAGCAAGATACTGAAGGAGCTGCATAAATCTTGCCAAAGAGAAGATGGTTCTGATGATCAGAAGAAAGGCACACAACTTTTGGAAGTCTATGCTA TTGAGAT CCAAATGTACACTGAAAC ]
[+] EMBL CF280850 [ ATCCGCCTCCGCAACTGCAAACCGCTGCGGTCTCGGAAACCCTAGCTCTCGCCCCCTCCCCTCCCTCTCCGCCCGTCGCCGCGCGGGTCGCCTCCTCCTCTCCGCCGCCACCGCCGCCGCTGACATGGGCTCCGATGCGGACATGGAGGATTACGGGTTCGAGTACTCCGACGACGAGCCGGAGGAGCAGGATGTTGACATCGAGAACCAGTACTACAACTCCAAAGGTATGGTTGAGACAGACCCTGAGGGTGCACTTGCTGGCTTCGATCAAGTAGTACGTATGGAGCCTGAAAAGGCTGAATGGGGTTTCAAAGCTCTGAAACAAACAGTGAAGCTGTATTATAAGCTTGGGAAGTACAAAGAAATGATGGATGCCTATAGGGGAGATGTTGACATACATCAAATCTGCTGTGACACGTAACTACAGTGAGAAATGTATAAACAACATTATGGGATTTTGTCTCCGGATCAGCTAGTCAAAACTTCTCTCTTCTGCAAGAGTTCTACCAGACAACACTGAAAGCACTTGAAGAGGCAAAGAATGAGAGATTATGGGTTTAAGACAAACCT ]
[+] EMBL AK103258 [ ACCGCTGCGGTCTCGGAAACCCTAGCTCTCGCCCCCTCCCCTCCCTCTCCGCCCGTCGCCGCGCGGGTCGCCTCCTCCTCTCCGCCGCCACCGCCGCCGCTGACATGGGCTCCGATGCGGACATGGAGGATTACGGGTTCGAGTACTCCGACGACGAGCCGGAGGAGCAGGATGTTGACATCGAGAACCAGTACTACAACTCCAAAGGTATGGTTGAGACAGACCCTGAGGGTGCACTTGCTGGCTTCGATCAAGTAGTACGTATGGAGCCTGAAAAGGCTGAATGGGGTTTCAAAGCTCTGAAACAAACAGTGAAGCTGTATTATAAGCTTGGGAAGTACAAAGAAATGATGGATGCCTATA GGGAGATGTTGACATACATCAAATCTGCTGTGACACGTAACTACAGTGAGAAATGTATAAACAACATTAT GGATTTTGTCTCCGGATCAGCTAGTCAACACTTCTCTCTTCTGCAAGAGTTCTACCAGACAACACTGAAAGCACTTGAAGAGGCAAAGAATGAGAGATTAT GGTTTAAGACAAACCTGAAGCTTTGCAAAATTTGGTTTGACATGGGGGAGTATGGCCGGATGAGCAAGATACTGAAGGAGCTGCATAAATCTTGTCAAAGAGAAGATGGTTCTGATGATCAGAAGAAAGGCACACAACTTTTGGAAGTCTATGCTA TTGAGAT CCAAATGTACACTGAAACAAAGAACAACAAAAAATTGAAGGAACTATATACAAAAGCTCTTTCCATCAAATCAGCGATACCTCATCCAAGAATCATGGGTATAATTCGTGAATGTGGTGGAAAGATGCACATGGCTGAGAGGCAATGGGCAGATGCTGCAACTGATTTCTTTGAAGCATTCAAAAACTATGATGAAGCTGGCAATCCGCGGAGAATTCAATGCCTGAAATATCTTGTTCTTGCAAATATGTTGATGGAATCTGAAGTGAATCCCTTTGATGGGCAAGAGGCTAAGCCGTACAAAAATGATCCTGAGATCCTCGCCATGACAAACTTGATTGCAGCATATCAGAAGAATGACATCATGGAATTTGAAAAGATTCTAAAGAGCAACAGAAGAACAATAATGGACGATCCTTTCATCCGTAATTATATTGAGGACCTATTGAAGAACATCAGAACTCAAGTTCTGCTCAAGCTTAT TAAGCCATATACTAGAATCAGGATTCCATTCATTTCACAGGAGCTAAATTTCCCAGAAAAGGATGTCGAGCAGCTCTTGGTCTCACTCATTCTGGATAACCGAATCCAGGGCCACATAGGTCAGGTGAACAAGTTACTAGAACGTGGTGACAGGTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCTGAAGAACATCTACCAAACGGTGTCCAACAGAGTTGGGTGAGAGAGATAGCAGGATGCCTGGGCTGCACTGCGCTTGGCACCTGCTTGCACGTTTTGTTGTGGTGGGTAAATGCAGCGAGTGTTTGGTGCGTGCATTACATTTGAGATAGGCTCTTGGATAGGTAAAGAAAAAAACAGTCTCGTGTATTAAACATGGTACTCTTTTGCGCGCCATGTGAAGATGCTGGGATTTTGTCCTGAACTGAATCTATCTGCAAATTCCAACCCCTCTGAAACTATACTAGCGTCAATGGCTCGAAACTTTTGGTTTTGTTGGCATTGCCGCACTAGCAAATTTTGGTATGGTAGAGAGAATGTTT ]
[+] EMBL AU081256 [ ATCGAGAACCAGTACTACAACTCCAAAGGTATGGTTGAGACAGACCCTGAGGGTGCACTTGCTGGCTTCGATCAAGTAGTACGTATGGAGCCTGAAAAGGCTGAATGGGGTTTCAAAGCTCTGAAACAAACAGTGAAGCTGTATTATAAGCTTGGGAAGTACAAAGAAATGATGGATGCCTATA GGGAGATGTTGACATACATCAAATCTGCTGTGACACGTAACTACAGTGAGAAATGTATAAACAACATTAT GGATTTTGTCTCCGGATCAGCTAGTCAAAACTTCTCTCTTCTGCAAGAGTTCTACCAGACAACACTGAAAGCACTTGAAGAGGCAAAGA ]
[+] EMBL AU081257 [ ACAACTCCAAAGGTCTGGTTGAGACAGACCCTGAGGGTGCACTTGCTGGCTTCGATCAAGTAGTACGTATGGANCCTGAAAAGGCTGAATGGGGTTTCAAAGCTCTGAAACAAACAGTGAAGCTGTATTATAAGCTTGGGAAGTACAAAGAAATGATGGATGCCTATA GGGAGATGTTGACATACATCAAATCTGCTGTGACACGTAACTACAGTGAGAAATGTATAAACAACATTAT GGATTTTGTCTCCGGATCAGCTAGTCAAAACTTCTCTCTTCTGCAAGAGTTCTACCAGACAACACTGAAAGCACTTGAAGAGGCAAAGAATGAGAGATTAT GGTTTAAGACAAACCTGAAGCTTTGCAAAATTTGGTTTGACATGGGGGAGTATGGCCGGATGAGCAAGATACTGAAGGAGCTGCATAAATCTTGTCAAAGAGAAGATGGTTCTGATGATCAGAAGAAAGGCACACAACTTTTGGAAGTCTATGCTA TTGAGAT CCAAATGTACACTGAAACAAAGAACAANAA ]
[+] EMBL D43561 [ GACACGTAACTACAGTGAGAAATGTATAAACAACATTAT GGATTTTGTCTCCGGATCAGCTAGTCAAAACTTCTCTCTTCTGCAAGAGTTCTACCAGACAACACTGAAAGCACTTGAAGAGGCAAAGAATGAGAGATTAT GGTTTAAGACAAACCTGAAGCTTTGCAAAATTTGGTTTGACATGGGGGAGTATGGCCGGATGAGCAAGATACTGAAGGAGCTGCATAAATCTTGTCAAAGAGAAGATGGTTCTGATGATCAGAAGAAAGGCACACAACTTTTGGAAGTCTATGCTATTTGAGGTCCCAAAT ]
[+] EMBL AU032236 [ CACTGAAAGCACTTGAAGAGGCAAAGAATGAGAGATTAT GGTTTAAGACAAACCTGAAGCTTTGCAAAATTTGGTTTGACATGGGGGAGTATGGCCGGATGAGCAAGATACTGAAGGAGCTGCATAAATCTTGTCAAAGAGAAGATGGTTCTGATGATCAGAAGAAAGGCACACAACTTTTGGAAGTCTATGCTA TTGAGAT CCAAATGTACACTGAAACAAAGAACAACAAAAAATTGAAGGAACTATATACANAAGCTCTTTCCATCAAATCAGCGATACCTCATCCAAGAATCATGGGTATAATTCGTGAATGTGGTGGAAAGATGCACATGGCTGAGAGGCAATGGGCAGATGCTGCAACTGATTTCTTTGAGGCATTCAAAAACTATGATGAAGCTTGCAATCCGCGGGGAATTCAATGCCTGAAATATCTTGTTCTTGC ]
[+] EMBL AK063907 [ ACAGAAGAACAATAATGGACGATCCTTTCATCCGTAATTATATTGAGGACCTATTGAAGAACATCAGAACTCAAGTTCTGCTCAAGCTTAT TAAGCCATATACTAGAATCAGGATTCCATTCATTTCACAGGAGCTAAATTTCCCAGAAAAGGATGTCGAGCAGCTCTTGGTCTCACTCATTCTGGATAACCGAATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAGGTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCTGAAGAACATCTACCAAACGGTGTCCAACAGAGTTGGGTGAGAGAGATAGCAGGATGCCTGGGCTGCACTGCGCTTGGCACCTGCTTGCACGTTTTGTTGTGGTGGGTAAATGCAGCGAGTGTTTGGTGCGTGCATTACATTTGAGATAGGCTCTTGGATAGGTAAAGAAAAAAACAGTCTCGTGTATTAAACATGGTACTCTTTTGCGCGCCATGTGAAGATGCTGGGATTTTGTCCTGAACTGAATCTATCTGCAAATTCCAACCCCTCTGAAACTATACTAGCGTCAATGGCTCGAAACTTTTGGTTTTGTTGGCATTGCCGCACTAGCAAATTTTGGTATGGTAGAGAGAATGTTTGGTTCCGTGTAAAATATGCACCAGGTACAAGACATACTGCTAATATTGTGCCGT ]
[+] EMBL BI806761 [ AGAAGAACAATAATGGACGATCCTTTCATCCGTAATTATATTGAGGACCTATTGAAGAACATCAGAACTCAAGTTCTGCTCAAGCTTATGTAAGCCATATACTAGAATCAGGATTCCATTCATTTCACAGGAGCTAAATTTCCCAGAAAAGGATGTCGAGCAGCTCTTGGTCTCACTCATTCTGGATAACCGAATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAGGTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCTGAAGAACATCTACC AACGGTGTCCAACAGAGTTGGGTGAGAGAGATAGCAGGATGCCTGGGCTGCACTGCGCTTGGCACCTGCTTGCACGTTTTGTTGTGGTGGGTAAATGCAGCGAGTGTTTGGTGCGTGCATTACATTTGAGATAGGCTCTTGGATAGGTAAAGAAAAAAACAG TCGTGTATTAAACATGGTACTCTTTTGCGCGCCATGTGAAGATGCTGGGATTTTGTCCTGAACTGAATCTATCTGCAAATTCCAACCCCTCTGAAACTAaaaa ]
[+] EMBL AU031587 [ AAGCCATAGACAAGTGGNATACTCAGCTGAAGNACATCTACCAAACGGTGTCCAACAGAGTTGGGTGAGAGNGATAGCNGGATGCCTGGGCTGCACTGCGCTTGGCACCTGCTTGCACGTTTTGTTGTGGTGGGTAAATGCAGCGNGTGTTTGGTGCGTGCATTACATTTGAGATAGGCTCTTGGATNGGTAAAGAAAAAAACAGTCTCGTGTATTAAACATGGTACTCTTTTGCGCGCCATGTGAAGATGCTGGGATTTTGTCCTGAACTGAATCTATCTGCAAATTCCAACCCNTCTGAAAaaaa ]
[+] EMBL CB661975 [ AATACTCCGCTGAAGAACATCTACCAAACGGTGTCCAACAGAGTTGGGTGAGAGAGATAGCAGGATGCCTGGGCTGCACTGCGCTTGGCACCTGCTTGCACGTTTTGTTGTGGTGGGTAAATGCAGCGAGTGTTTGGTGCGTGCATTACATTTGAGATAGGCTCTTGGATAGGTAAAGAAAAAAACAGTCTCGTGTATTAAACATGGTACTCTTTTGCGCGCCATGTGAAGATGCTGGGATTTTGTCCTGAACTGAATCTATCTGCAAATTCC ]
[+] EMBL AU081361 [ CGCGCCATGTGAAGATGCTGGGATTTTGTCCTGAACTGAATCTATCTGCAAATTCCAACCCCTCTGAAACTATACTAGCGTCAATGGCTCGAAACTTTTGGTTTTGTTGGCATTGCCGCACTAGCAAATTTTGGTATGGTAGAGAGAATGTTTGGTTCCGTGTAAAATATGCACCAGGTACAAGACATACTGCTAATATTGTGCCGTTGCCGAGTTCTGATAGTGTTGCCAACCAATCACTTTCAAATCAAAAAAAN]
consensusID : consensus_14220#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 862 fasta sequence
[GAGACAAGGGGGGGCAGATGCTGCAACTGATTTCTTTGAAGCATTCAAAAACTATGATGAAACTGGCAATCCGCGGAGAATTCAATGCCTGAAATATCTTGTTCTTGCAAATATGTTGATGGAATCTGAAGTGAATCCCTTCGATGGGCAAGAGGCTAAGCCGTACAAAAATGATCCTGAGATCCTCGCCATGACAAACTTGATTGCAGCATATCAGAAGAATGACATCATGGAATTTGAAAAGATTCTAAAGAGCAACAGAAGAACAATAATGGACGACCCTTTCATCCGTAATTATATTGAGGACCTATTGAAGAACATCAGAACTCAAGTTCTGCTCAAGCTTATTAAGCCATATACTAGAATCAGGATTCCATTCATTTCACAGGTGATTCCAGTTCAATTGAAATCATGTGCGCTTAATCGTGCAGACCCTATGCTGTTCCTCACGGAGGTCTAGGTTTTTGTGAAATTTGCTTTCGTACAGTGTACAAGATGCCTTGTCATCGATTGTTCTGTCAATGTTTTGCACGTAGGAGCTAAATTTCCCAGAAAAGGATGTCGAGCAGCTCTTGGTCTCACTCATTCTGGATAACCGAATCCAGGGCCACATAGATCAGGTGAACAAGNTACTAGAACGTGGTGACAGGTCGAANGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCTGAAGAACATCTACCAAACGGNGTCAACAGAGTTGGGTGAGANAGATAGCAGGATGCCTGGGCTGCACTGCGCTTGGCACCTGCTTTGCACGNTTTGNTGGGGNGGGTAATGCAACGAGNGGTTGGNGCGTCATTACATTTGANANAGGCTCTTGGATAGGTA]
[+] EMBL CA764397 [GAGACAAGGGGGGGCAGATGCTGCAACTGATTTCTTTGAAGCATTCAAAAACTATGATGAAACTGGCAATCCGCGGAGAATTCAATGCCTGAAATATCTTGTTCTTGCAAATATGTTGATGGAATCTGAAGTGAATCCCTTCGATGGGCAAGAGGCTAAGCCGTACAAAAATGATCCTGAGATCCTCGCCATGACAAACTTGATTGCAGCATATCAGAAGAATGACATCATGGAATTTGAAAAGATTCTAAAGAGCAACAGAAGAACAATAATGGACGACCCTTTCATCCGTAATTATATTGAGGACCTATTGAAGAACATCAGAACTCAAGTTCTGCTCAAGCTTATTAAGCCATATACTAGAATCAGGATTCCATTCATTTCACAGGTGATTCCAGTTCAATTGAAATCATGTGCGCTTAATCGTGCAGACCCTATGCTGTTCCTCACGGAGGTCTAGGTTTTTGTGAAATTTGCTTTCGTACAGTGTACAAGATGCCTTGTCATCGATTGTTCTGTCAATGTTTTGCACGTAGGAGCTAAATTTCCCAGAAAAGGATGTCGAGCAGCTCTTGGTCTCACTCATTCTGGATAACCGAATCCAGGGCCACATAGATCAGGTGAACAAGNTACTAGAACGTGGTGACAGGTCGAANGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCTGAAGAACATCTACCAAACGGNGTCAACAGAGTTGGGTGAGANAGATAGCAGGATGCCTGGGCTGCACTGCGCTTGGCACCTGCTTTGCACGNTTTGNTGGGGNGGGTAATGCAACGAGNGGTTGGNGCGTCATTACATTTGANANAGGCTCTTGGATAGGTA]
consensusID : consensus_14220#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence
[ACTAGTAACCGCTGTGTGACCACGGTCGAANGGGAATGAGCGAAATTATCCCATAGCCACTAGTGACCACAGCTGGAATAACTCAGCCTGAAGAGACATTCCGTATCCACATACGGTGTCCACAACACGAGGTTGGGTGAGACGAGATATGCCACGGATGCCTGGGCTGGCACCTGCGCTTGGCACCCTGCTTGCACCGTTTTGTTGTGGTGGGTAAATGCACGCGAGTGTTTGGCTGCGTACATTACACTTTGAGATTAGGCTCTTGGATAGGTAAAGAAAAAAACAGTCTCGTGTATTAAACATGGTACTCTTTTGCGCGCCATGTGAAGATGCTGGGATTTTGTCCTGAACTGAATCTATCTGCAAATTCCAACCCCTCTGAAACTATACTAGCGTCAAAAAAAAAA]
[+] EMBL BQ909012 [ACTAGTAACCGCTGTGTGACCACGGTCGAANGGGAATGAGCGAAATTATCCCATAGCCACTAGTGACCACAGCTGGAATAACTCAGCCTGAAGAGACATTCCGTATCCACATACGGTGTCCACAACACGAGGTTGGGTGAGACGAGATATGCCACGGATGCCTGGGCTGGCACCTGCGCTTGGCACCCTGCTTGCACCGTTTTGTTGTGGTGGGTAAATGCACGCGAGTGTTTGGCTGCGTACATTACACTTTGAGATTAGGCTCTTGGATAGGTAAAGAAAAAAACAGTCTCGTGTATTAAACATGGTACTCTTTTGCGCGCCATGTGAAGATGCTGGGATTTTGTCCTGAACTGAATCTATCTGCAAATTCCAACCCCTCTGAAACTATACTAGCGTCAAAAAAAAAA]
consensusID : consensus_14220#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 294 fasta sequence
[CATGAAAATTATTAGTAACATGGAACTTTGGTATATACTCGTGCTATTTTAGGAAGTTGCAAGAAATATAGTTTGAAGCTTGATCTTTTTCTGTCGTGTGCCCAAACNAGGTGATTCCAGTTCAATTGAAATCATGTGCGCTTAATCGTGCAGACCCTATGCTGTTCCTCACGGAGGTCTAGTTTTTTGTGAAATTTGCTTTCGTACAGTGTACAAGATGCCTTGTCATCGATTGTTCTGTCAATGTTTTGCATGTAGGAGCTAAATTTCCCAGAAAAGGATGTCGAGCAGCTC]
[+] EMBL AU081351 [CATGAAAATTATTAGTAACATGGAACTTTGGTATATACTCGTGCTATTTTAGGAAGTTGCAAGAAATATAGTTTGAAGCTTGATCTTTTTCTGTCGTGTGCCCAAACNAGGTGATTCCAGTTCAATTGAAATCATGTGCGCTTAATCGTGCAGACCCTATGCTGTTCCTCACGGAGGTCTAGTTTTTTGTGAAATTTGCTTTCGTACAGTGTACAAGATGCCTTGTCATCGATTGTTCTGTCAATGTTTTGCATGTAGGAGCTAAATTTCCCAGAAAAGGATGTCGAGCAGCTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14220#1 ------------------------------------------------------------
consensus_14220#3 ------------------------------------------------------------
consensus_14220#0 CTCTCCGCATCCGCCTCCGCAACTGCAAACCGCTGCGGTCTCGGAAACCCTAGCTCTCGC 60
consensus_14220#2 ------------------------------------------------------------
consensus_14220#1 ------------------------------------------------------------
consensus_14220#3 ------------------------------------------------------------
consensus_14220#0 CCCCTCCCCTCCCTCTCCGCCCGTCGCCGCGCGGGTCGCCTCCTCCTCTCCGCCGCCACC 120
consensus_14220#2 ------------------------------------------------------------
consensus_14220#1 ------------------------------------------------------------
consensus_14220#3 ------------------------------------------------------------
consensus_14220#0 GCCGCCGCTGACATGGGCTCCGATGCGGACATGGAGGATTACGGGTTCGAGTACTCCGAC 180
consensus_14220#2 ------------------------------------------------------------
consensus_14220#1 ------------------------------------------------------------
consensus_14220#3 ------------------------------------------------------------
consensus_14220#0 GACGAGCCGGAGGAGCAGGATGTTGACATCGAGAACCAGTACTACAACTCCAAAGGTATG 240
consensus_14220#2 ------------------------------------------------------------
consensus_14220#1 ------------------------------------------------------------
consensus_14220#3 ------------------------------------------------------------
consensus_14220#0 GTTGAGACAGACCCTGAGGGTGCACTTGCTGGCTTCGATCAAGTAGTACGTATGGAGCCT 300
consensus_14220#2 ------------------------------------------------------------
consensus_14220#1 ------------------------------------------------------------
consensus_14220#3 ------------------------------------------------------------
consensus_14220#0 GAAAAGGCTGAATGGGGTTTCAAAGCTCTGAAACAAACAGTGAAGCTGTATTATAAGCTT 360
consensus_14220#2 ------------------------------------------------------------
consensus_14220#1 ------------------------------------------------------------
consensus_14220#3 ------------------------------------------------------------
consensus_14220#0 GGGAAGTACAAAGAAATGATGGATGCCTATAGGGAGATGTTGACATACATCAAATCTGCT 420
consensus_14220#2 ------------------------------------------------------------
consensus_14220#1 ------------------------------------------------------------
consensus_14220#3 ------------------------------------------------------------
consensus_14220#0 GTGACACGTAACTACAGTGAGAAATGTATAAACAACATTATGGATTTTGTCTCCGGATCA 480
consensus_14220#2 ------------------------------------------------------------
consensus_14220#1 ------------------------------------------------------------
consensus_14220#3 ------------------------------------------------------------
consensus_14220#0 GCTAGTCAAAACTTCTCTCTTCTGCAAGAGTTCTACCAGACAACACTGAAAGCACTTGAA 540
consensus_14220#2 ------------------------------------------------------------
consensus_14220#1 ------------------------------------------------------------
consensus_14220#3 ------------------------------------------------------------
consensus_14220#0 GAGGCAAAGAATGAGAGATTATGGTTTAAGACAAACCTGAAGCTTTGCAAAATTTGGTTT 600
consensus_14220#2 ------------------------------------------------------------
consensus_14220#1 ------------------------------------------------------------
consensus_14220#3 ------------------------------------------------------------
consensus_14220#0 GACATGGGGGAGTATGGCCGGATGAGCAAGATACTGAAGGAGCTGCATAAATCTTGTCAA 660
consensus_14220#2 ------------------------------------------------------------
consensus_14220#1 ------------------------------------------------------------
consensus_14220#3 ------------------------------------------------------------
consensus_14220#0 AGAGAAGATGGTTCTGATGATCAGAAGAAAGGCACACAACTTTTGGAAGTCTATGCTATT 720
consensus_14220#2 ------------------------------------------------------------
consensus_14220#1 ------------------------------------------------------------
consensus_14220#3 ------------------------------------------------------------
consensus_14220#0 GAGATCCAAATGTACACTGAAACAAAGAACAACAAAAAATTGAAGGAACTATATACAAAA 780
consensus_14220#2 ------------------------------------------------------------
consensus_14220#1 ------------------------------------------------------------
consensus_14220#3 ------------------------------------------------------------
consensus_14220#0 GCTCTTTCCATCAAATCAGCGATACCTCATCCAAGAATCATGGGTATAATTCGTGAATGT 840
consensus_14220#2 ------------------------------------------------------------
consensus_14220#1 ------------------------------------------------------------
consensus_14220#3 ------------------------------------------------------------
consensus_14220#0 GGTGGAAAGATGCACATGGCTGAGAGGCAATGGGCAGATGCTGCAACTGATTTCTTTGAA 900
consensus_14220#2 ------------------------------------------------------------
consensus_14220#1 ------------------------------------------------------------
consensus_14220#3 ------------------------------------------------------------
consensus_14220#0 GCATTCAAAAACTATGATGAAGCTGGCAATCCGCGGAGAATTCAATGCCTGAAATATCTT 960
consensus_14220#2 ------------------------------------------------------------
consensus_14220#1 ------------------------------------------------------------
consensus_14220#3 ------------------------------------------------------------
consensus_14220#0 GTTCTTGCAAATATGTTGATGGAATCTGAAGTGAATCCCTTTGATGGGCAAGAGGCTAAG 1020
consensus_14220#2 ------------------------------------------------------------
consensus_14220#1 ------------------------------------------------------------
consensus_14220#3 ------------------------------------------------------------
consensus_14220#0 CCGTACAAAAATGATCCTGAGATCCTCGCCATGACAAACTTGATTGCAGCATATCAGAAG 1080
consensus_14220#2 ------------------------------------------------------------
consensus_14220#1 ----------------------------------GAGACAAGGGGGGGCAGATGCTGCAA 26
consensus_14220#3 ------------------------------------------------------------
consensus_14220#0 AATGACATCATGGAATTTGAAAAGATTCTAAAGAGCAACAGAAGAACAATAATGGACGAT 1140
consensus_14220#2 ------------------------------------------------------------
consensus_14220#1 CTGATTTCTTTGAAGCATTCAAAAACTATGATGAAACTGGCAATCCGCGGAGAATTCAAT 86
consensus_14220#3 ------------------------------------------------------------
consensus_14220#0 CCTTTCATCCGTAATTATATTGAGGACCTATTGAAGAACATCAGAACTCAAGTTCTGCTC 1200
consensus_14220#2 ------------------------------------------------------------
consensus_14220#1 GCCTGAAATATCTTGTTCTTGCAAATATGTTGATGGAATCTGAAGTGAATCCCTTCGATG 146
consensus_14220#3 ------------------------------------------------------------
consensus_14220#0 AAGCTTATTAAGCCATATACTAGAATCAGGATTCCATTCATTTCACAGGAGCTAAATTTC 1260
consensus_14220#2 ------------------------------------------------------------
consensus_14220#1 GGCAAGAGGCTAAGCCGTACAAAAATGATCCTGAGATCCTCGCCATGACAAACTTGATTG 206
consensus_14220#3 ------------------------------------------------------------
consensus_14220#0 CCAGAAAAGGATGTCGAGCAGCTCTTGGTCTCACTCATTCTGGATAACCGAATCCAGGGC 1320
consensus_14220#2 --------------------------------ACTAGTAACCGCTGTGTGA--CCACGGT 26
consensus_14220#1 CAGCATATCAGAAGAATGACATCATGGAATTTGAAAAGATTCTAAAGAGCAACA-GAAGA 265
consensus_14220#3 ----------------------------------------------------CATGAAAA 8
consensus_14220#0 CACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAGGTCGAAGGGAATGAGGAAA 1380
consensus_14220#2 CGAANGGG---AATGAGCGAA--ATTATCCCATAGCCACTAGT-GACCACAGCTGGAATA 80
* * *
consensus_14220#1 ACAATAATGG-ACGACCCTTTCATCCGTAATTATATTGAGGAC-CTATTGAAGAAC---- 319
consensus_14220#3 TTATTAGTAACATGGAACTTTGGTATATACTCGTGCTA------TTTTAGGAAGTT---- 58
consensus_14220#0 TACCAAGCCATAGACAAGTGGAATACTCAGCTGAAGAACATCTACCAAACGGTGTCCAAC 1440
consensus_14220#2 ACTCAGCCTGAAGAGACATTCCGTATCCA--CATACGGTGTCCACAACACGAGGTT---- 134
* * * *
consensus_14220#1 --------ATCAGAACTCAAGTTCT--GCTCAAGCTTATTAAGCCATATACT--AGAATC 367
consensus_14220#3 --------GCAAGAAATATAGTTTGAAGCTTGATCTTTTTCTGTCGTGTGCC--CAAACN 108
consensus_14220#0 AGAGTTGGGTGAGAGAGATAGCAGGATGCCTGGGCTG-CAC-TGCGCTTGGCACC-TGCT 1497
consensus_14220#2 -GGGTGAGACGAGATATGCCAC-GGATGCCTGGGCTGGCACCTGCGCTTGGCACCCTGCT 192
*** ** ** * *
consensus_14220#1 AGGATTCCATTCATTTCACAGGTGATTCCA-------GTTCAATTGAAATCATGTGCGCT 420
consensus_14220#3 AGG-------------------TGATTCCA-------GTTCAATTGAAATCATGTGCGCT 142
consensus_14220#0 TGCAC-GTTTTGTTGTGGTGGGTAAATGCA-GCGAGTGTTTGG-TGCGTGCAT-TACA-T 1552
consensus_14220#2 TGCACCGTTTTGTTGTGGTGGGTAAATGCACGCGAGTGTTTGGCTGCGTACAT-TACACT 251
* * * * ** *** ** *** * * *
consensus_14220#1 TAATCGTGCAGACCCTATGCTGTTCCTCACGGAG---GTCTAGGTTTTTG----TGAAAT 473
consensus_14220#3 TAATCGTGCAGACCCTATGCTGTTCCTCACGGAG---GTCTAGTTTTTTG----TGAAAT 195
consensus_14220#0 TTGAGAT-AGGCTCTTGGATAGGTAAAGAAAAAAACAGTCTCGTGTATTAAACATGGTAC 1611
consensus_14220#2 TTGAGATTAGGCTCTTGGATAGGTAAAGAAAAAAACAGTCTCGTGTATTAAACATGGTAC 311
* * * * * * * * * **** * * ** ** *
consensus_14220#1 TTGCTTTCGTACAGTGTACAAGATGCCTTGTCATCGATTGTTCTGTCAATGTTTTGCACG 533
consensus_14220#3 TTGCTTTCGTACAGTGTACAAGATGCCTTGTCATCGATTGTTCTGTCAATGTTTTGCATG 255
consensus_14220#0 TCTTTTGCGCGCCATGTG-AAGATGC--TGGGATT--TTGTCCTGAACTGAATCTATCTG 1666
consensus_14220#2 TCTTTTGCGCGCCATGTG-AAGATGC--TGGGATT--TTGTCCTGAACTGAATCTATCTG 366
* ** ** * *** ******* ** ** **** *** * * *
consensus_14220#1 TAGGAGCTAAATTTCCCAGAA----AAGGATGTCGAGCAGCTCTTGGTCTCACTCATTCT 589
consensus_14220#3 TAGGAGCTAAATTTCCCAGAA----AAGGATGTCGAGCAGCTC----------------- 294
consensus_14220#0 CAAATTCCAACCCCTCTGAAACTATACTAGCGTCAATGGCTCGAAACTTTTGGTTTTGTT 1726
consensus_14220#2 CAAATTCCAACCCCTCTGAAACTATACTAGCGTCAAAAAAAAAA---------------- 410
* * ** * ** * *** *
consensus_14220#1 GGATAACCGAATCCAGGGCCACATAGATCAGGTGAACAAGNTACTAGAACGTGGTGACAG 649
consensus_14220#3 ------------------------------------------------------------
consensus_14220#0 GGCATTGCCGCACTAGCAAATTTTGGTATGGTAGAGAGAATGTTTGGTTCCGTGTAAAAT 1786
consensus_14220#2 ------------------------------------------------------------
consensus_14220#1 GTCGAANGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCTGAAGAACAT 709
consensus_14220#3 ------------------------------------------------------------
consensus_14220#0 ATGCACCAGGTACAAGACATACTGCTAATATTGTGCCGTTGCCGAGTTCTGATAGTGTTG 1846
consensus_14220#2 ------------------------------------------------------------
consensus_14220#1 CTACCAAACGGNGTCAACAGAGTTGGGTGAGANAGATAGCAGGATGCCTGGGCTGCACTG 769
consensus_14220#3 ------------------------------------------------------------
consensus_14220#0 CCAACCAATCACTTTCAAATCAAAAAAAN------------------------------- 1875
consensus_14220#2 ------------------------------------------------------------
consensus_14220#1 CGCTTGGCACCTGCTTTGCACGNTTTGNTGGGGNGGGTAATGCAACGAGNGGTTGGNGCG 829
consensus_14220#3 ------------------------------------------------------------
consensus_14220#0 ------------------------------------------------------------
consensus_14220#2 ------------------------------------------------------------
consensus_14220#1 TCATTACATTTGANANAGGCTCTTGGATAGGTA 862
consensus_14220#3 ---------------------------------
consensus_14220#0 ---------------------------------
consensus_14220#2 ---------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||