cluster # 14222

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Oryza sativa
cluster # 14222 cluster # 14222 Sequences # 15 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_14222#0 length = 1621 sequences # 10

consensus_14222#1 length = 779 sequences # 3
consensus_14222#2 length = 444 sequences # 2

consensusID : consensus_14222#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1621
fasta sequence

                              [TTCTCCCAC-CTCCACC-GGCGACGCCACCGCCGCCGCCTCCTCCTCCTCCGCCTCTCTACGGCAGCCTCGCCGCCGCGCCGCGCAGCGCAGCGC-AGAGCAACATGGAAGCGACGGGCGCCGCCGTATCCGCCTTCTCCACCGCGTCCTCGTCGAGTCCCGCGGCGCCTAGACACGGCCGTCTCCTGGCGAGCCCCGCGGCGTGGCGCAGCGCACGGACGCTGCCACCACGGGCCGTCGCCTCCTCCCGCGCGACGGTCCTCGTCTCGAACCCTCCTCCGCCGCCGCTGCCGCCGACACCCGCTCCTGCTGCGGTCGCGCCCTCCAAGGTCGACCGGTCCGGGCGGTTCTGTAGCCCCCGCGCCGCTCGCGAGCTCGCGCTGATGATTTCCTACGCGGCTTGCCTTGAGGGCGCCGACGTGGTGCGGCTCTTCGACCGCAGAATCAGCGCGAGAAGAGAACCTGGCTATGTTTTCGATAAGGCGTGCGTGGTGAACTACAACCATATGAGCTTCGGTGGGGGACCTCTGGAGGTCGGGACAGAGGAGGAGGCTGAGAAGCTCATGAGTCAGAACGAGAAGGATTCAGCAAATGAAGCAGAAGTTCTTTCAGCTCCTCCAAAGCTGGTGTACAACAACTTTGTGTTACGACTGGCTCGAGAAATTTTAGTGGCTGTTGCCAGTGGATGGGACAAGCATGTTGATATCATCAACAAAATAACTCCCCAGAATTGGAAGGACGAACCTGTTGCAAGGATCCTTGAACTTTGTATTCTTCATATTGCCATGGCAGAGATGACATCAAAAGGAACACCTCACAAAATTGTCATTAACGAGGCTGTGGATTTGGCAAAACGGTTCTGTGATGGTGGTGCTCCTCGGGTAATCAATGGATGCCTTCGGACATTTGTGAAGGATCACATGAACATTGACACCAGTCAGCCAGCTCCAGCTGAGTCAAAAGCGTGAAGTTTTTGCAAATATGAAAATATGAATCATCACAAATATGATTCAAAGAATAGAAGCACGGAGAAAATCCTGCTCTCTTTGTCTGATCTCCTTTGGTTGTTTAAAGATTGATTGGTGAAGTTGAAAGGAGGCAAACATGCTGGACTTGTGGAGAACTAGAAGTATCTTCAATATTTAGCTGGTGGTTAGACTAGATATGTTGA-GCCATATACTGATGATGCACTCTTCTTGAAGAACTAAATGACACTACTTCTAACAGCTTTTGCCATGCTGATTCCTGTGCTTAATGGGACAAGAGAACCTGTATCATAGTGTATGTGTAAAGTTGCAAGGTAAGGGTTGCATCTCTCAATTTCACAATAACGTGCTTGAGCTGCTGAGTAAGTTGGGAGTTGGGAGTTTGCAGCTGATACTATGGAAGATGCATTTTCTCCAAGATTTGGATATGATATATTGTGTAATTCTACCTGCACACGAGTTCTGTTCAAATATAAATTTGGTACACCTCTAATAGTATTTGTATTGTATATGGCTGCAAACTTTTCCTACGAAATTCTTTGTAAGTAGCAT-GGGTTGTAACCTGCTTAACGATCCAATGATTGCTGCTTTAATTAATAAGTTTGTTGCAGGAAAAAAAAAATTAAAAAAAAAAAAAA]

[+] EMBL AK066416             [TTCTCCCAC CTCCACC GGCGACGCCACCGCCGCCGCCTCCTCCTCCTCCGCCTCTCTACGGCAGCCTCGCCGCCGCGCCGCGCAGCGCAGCGC AGAGCAACATGGAAGCGACGGGCGCCGCCGTATCCGCCTTCTCCACCGCGTCCTCGTCGAGTCCCGCGGCGCCTAGACACGGCCGTCTCCTGGCGAGCCCCGCGGCGTGGCGCAGCGCACGGACGCTGCCACCACGGGCCGTCGCCTCCTCCCGCGCGACGGTCCTCGTCTCGAGCCCTCCTCCGCCGCCGCTGCCGCCGACACCCGCTCCTGCTGCGGTCGCGCCCTCCAAGGTCGACCGGTCCGGGCGGTTCTGTAGCCCCCGCGCCGCTCGCGAGCTCGCGCTGATGATTTCCTACGCGGCTTGCCTTGAGGGCGCCGACGTGGTGCGGCTCTTCGACCGCAGAATCAGCGCGAGAAGAGAACCTGGCTATGTTTTCGATAAGGCGTGCGTGGTGAACTACAACCATATGAGCTTCGGTGGGGGACCTCTGGAGGTCGGGACAGAGGAGGAGGCTGAGAAGCTCATGAGTCAGAACGAGAAGGATTCAGCAAATGAAGCAGAAGTTCTTTCAGCTCCTCCAAAGCTGGTGTACAACAACTTTGTGTTACGACTGGCTCGAGAAATTTTAGTGGCTGTTGCCAGTGGATGGGACAAGCATGTTGATATCATCAACAAAATAACTCCCCAGAATTGGAAGGACGAACCTGTTGCAAGGATCCTTGAACTTTGTATTCTTCATATTGCCATGGCAGAGATGACATCAAAAGGAACACCTCACAAAATTGTCATTAACGAGGCTGTGGATTTGGCAAAACGGTTCTGTGATGGTGGTGCTCCTCGGGTAATCAATGGATGCCTTCGGACATTTGTGAAGGATCACATGAACATTGACACCAGTCAGCCAGCTCCAGCTGAGTCAAAAGCGTGAAGTTTTTGCAAATATGAAAATATGAATCATCACAAATATGATTCAAAGAATAGAAGCACGGAGAAAATCCTGCTCTCTTTGTCTGATCTCCTTTGGTTGTTTAAAGATTGATTGGTGAAGTTGAAAGGAGGCAAACATGCTGGACTTGTGGAGAACTAGAAGTATCTTCAATATTTAGCTGGTGGTTAGACTAGATATGTTGA GCCATATACTGATGATGCACTCTTCTTGAAGAACTAAATGACACTACTTCTAACAGCTTTTGCCATGCTGATTCCTGTGCTTAATGGGACAAGAGAACCTGTATCATAGTGTATGTGTAAAGTTGCAAGGTAAGGGTTGCATGTCTCAATTTCACAATAACGTGCTTGAGCTGCTGAGTAAGTTGGGAGTTGGGAGTTTGCAGCTGATACTATGGAAGATGCATTTTCTCCAAGATTTGGATATGATATATTGTGTAATTCTACCTGCACACGAGTTCTGTTCAAATATAAATTTGGTACACCTCTAATAGTATTTGTATTGTATATGGCTGCAAACTTTTCCTACGAAATTCTTTGTAAGTAGCAT GGGTTGTAACCTGCTTAACGATCCAATGATTGCTGCTTTAATTAATA                                       ]
[+] EMBL CB648110             [  CTCCCAC CTCCACC GGCGACGCCACCGCCGCCGCCTCCTCCTCCTCCGCCTCTCTACGGCAGCCTCGCCGCCGCGCCGCGCAGCGCAGCGC AGAGCAACATGGAAGCGACGGGCGCCGCCGTATCCGCCTTCTCCACCGCGTCCTCGTCGAGTCCCGCGGCGCCTAGACACGGCCGTCTCCTGGCGAGCCCCGCGGCGTGGCGCAGCGCACGGACGCTGCCACCACGGGCCGTCGCCTCCTCCCGCGCGACGGTCCTCGTCTCGAACCCTCCTCCGCCGCCGCTGCCGCCGACACCCGCTCCTGCTGCGGTCGCGCCCTCCAAGGTCGACCGGTCCGGGCGGTTCTGTAGCCCCCGCGCCGCTCGCGAGCTCGCGCTGATGATTTCCTACGCGGCTTGCCTTGAGGGCGCCGACGTGGTGCGGCTCTTCGACCGCAGAATCAGCGCGAGAAGAGAACCTGGCTATGTTTTCGATAAGGCGTGCGTGGTGAACTACAACCATATGAGCTTCGGTGGGGGACCTCTGGAGGTCGGGACAGAGGAGGAGGCTGAGAAGCTCATGAGTCAGAACGAGAAGGATTCAGCAAATGAAGCAGAAGTTCTTTCAGCTCCTCCAAAGCTGGTGTACAACAACTTTGTGTTACGACTGGCTCGAGAAATTTTAGTGGCTGTTGCCAGTGGATGGGACAAGCATGTTGATATCATCAACAAAATAACTCCCCAGAATTGGAAGGACGAACCTGTTGCAAGGATCCTTGAACTTTGTATTCTTCATATTGCCATGGCAGAGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CB643962             [     CCAC CTCCACC GGCGACGCCACCGCCGCCGCCTCCTCCTCCTCCGCCTCTCTACGGCAGCCTCGCCGCCGCGCCGCGCAGCGCAGCGC AGAGCAACATGGAAGCGACGGGCGCCGCCGTATCCGCCTTCTCCACCGCGTCCTCGTCGAGTCCCGCGGCGCCTAGACACGGCCGTCTCCTGGCGAGCCCCGCGGCGTGGCGCAGCGCACGGACGCTGCCACCACGGGCCGTCGCCTCCTCCCGCGCGACGGTCCTCGTCTCGAACCCTCCTCCGCCGCCGCTGCCGCCGACACCCGCTCCTGCTGCGGTCGCGCCCTCCAAGGTCGACCGGTCCGGGCGGTTCTGTAGCCCCCGCGCCGCTCGCGAGCTCGCGCTGATGATTTCCTACGCGGCTTGCCTTGAGGGCGCCGACGTGGTGCGGCTCTTCGACCGCAGAATCAGCGCGAGAAGAGAACCTGGCTATGTTTTCGATAAGGCGTGCGTGGTGAACTACAACCATATGAGCTTCGGTGGGGGACCTCTGGAGGTCGGGACAGAGGAGGAGGCTGAGAAGCTCATGAGTCAGAACGAGAAGGATTCAGCAAATGAAGCAGAAGTTCTTTCAGCTCCTCCAAAGCTGGTGTACAACAACTTTGTGTTACGACTGGCTCGAGAAATTTTAGTGGCTGTTGCCAGTGGATGGGACAAGCATGTTGATATCATCAACAAAATAACTCCCCAGAATTGGAAGGACGAACCTGTTGCAAGGATCCTTGAACTTTGTATTCTTCATATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CB675113             [      CACGCTCCACCTTTCGACGCCACCGCCGCCGCCTCCTCCTCCTCCGCCTCTCTACGGCAGCCTCGCCGCCGCGCCGCGCAGCGCAGCGC AGAGCAACATGGAAGCGACGGGCGCCGCCGTATCCGCCTTCTCCACCGCGTCCTCGTCGAGTCCCGCGGCGCCTAGACACGGCCGTCTCCTGGCGAGCCCCGCGGCGTGGCGCAGCGCACGGACGCTGCCACCACGGGCCGTCGCCTCCTCCCGCGCGACGGTCCTCGTCTCGAACCCTCCTCCGCCGCCGCTGCCGCCGACACCCGCTCCTGCTGCGGTCGCGCCCTCCAAGGTCGACCGGTCCGGGCGGTTCTGTAGCCCCCGCGCCGCTCGCGAGCTCGCGCTGATGATTTCCTACGCGGCTTGCCTTGAGGGCGCCGACGTGGTGCGGCTCTTCGACCGCAGAATCAGCGCGAGAAGAGAACCTGGCTATGTTTTCGATAAGGCGTGCGTGGTGAACTACAACCATATGAGCTTCGGTGGGGGACCTCTGGAGGTCGGGACAGAGGAGGAGGCTGAGAAGCTCATGAGTCAGAACGAGAAGGATTCAGCAAATGAAGCAGAAGTTCTTTCAGCTCCTCCAAAGCTGGTGTACAACAACTTTGTGTTACGACTGGCTCGAGAAATTTTAGTGGCTGTTGCCAGTGGATGGGACAAGCATGTTGATATCATCAACAAAATAACTCCCCAGAATTGGAAGGACGAACCTGTTGCAAGGATCCTTGAACTTTGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL OSC107711            [           TCCACC GGCGACGCCACCGCCGCCGCCTCCTCCTNCTCCGCCTCTCTACGGCAGCCTCGCCGCCGCGCCGCGCA  GCAGCGCAAGAGCAACATGGAAGCNACGGGCGCCGNCGTATCCGCCTTCTCCANCGCGTCCTCGTCGAGTCCCGCGGNGCCTAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CB675114             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TTAACGAGGCTGTGGATTTGGCAAAACGGTTCTGTGATGGTGGTGCTCCTCGGGTAATCAATGGATGCCTTCGGACATTTGTGAAGGATCACATGAACATTGACACCAGTCAGCCAGCTCCAGTTGAGTCAAAAGCGTGAAGTTTTTGCAAATATGAAAATATGAATCATCACAAATATGATTCAAAGAATAGAAGCGCGGAGAAAATCCTGCTCTCTTTGTCTGATCTCCTTTGGTTGTTTAAAGATTGATTGGTGAAGTTGAAAGGAGGCAAACATGCTGGACTTGTGGAGAACTAGAAGTATCTTCAATATTTAGCTGGTGGTTAGACTAGATATGTTGA GCCATATACTGATGATGCACTCTTCTTGAAGAACTAAATGACACTACTTTTAACAGCTTTTGCCATGCTGATTCCTGTGCTTAATGGGACAAGAGAACCTGTATCATAGTGTATGTGTAAAGTTGCAAGGTAAGGGTTGCATCTCTCAATTTCACAATAACGTGCTT AGCTGCTGAGTAAGTTGGGAGTTGGGAGTTTGCAGCTGATACTATGGAAGATGCATTTTCTCCAAGATTTGGATATGATATATTGTGTAATTCTACCTGCACACGAGTTCTGTTCAAAAAGAAATTTGG                                                                                                                                                             ]
[+] EMBL BQ908351             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CTTTGTCTGATCTCCTTTGGTTGTTTAAAGATTGATTGGTGAAGTTGAAAGGAGGCAAACATGCTGGACTTGTGGAGAACTAGAAGTATCTTCAATATTTAGCTGGTGGTTAGACTAGATATGTTGACGCCATATACTGATGATGCACTCTTCTTGAAGAACTAAATGACACTACTTCTAACAGCTTTTGCCATGCTGATTCCTGTGCTTAATGGGACAAGAGAACCTGTATCATAGTGTATGTGTAAAGTTGCAAGGTAAGGGTTGCATCTCTCAATTTCACAATAACGTGCTTGAGCTGCTGAGTAAGTTGGGAGTTGGGAGTTTGCAGCTGATACTATGGAAGATGCATTTTCTCCAAGATTTGGATATGATATATTGTGTAATTCTACCTGCACACGAGTTCTGTTCAAATATAAATTTGGTACACCTCTAATAGTATTTGTATTGTATATGGCTGCAAACTTTTCCTACGAAATTCTTTGTAAGTAGCAT GGGTTGTAACCTGCTTAACGATCCAATGATTGCTGCTTTAATTAATAAGTTTGTTGCAGGAAAAAAAAAA                ]
[+] EMBL CF337796             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ATGCTGATTCCTGTGCTTAATGGGACAAGAGAACCTGTATCATAGTGTATGTGTAAAGTTGCAAGGTAAGGGTTGCATCTCTCAATTTCACAATAACGTGCTTGAGCTGCTGAGTAAGTTGGGAGTTGGGAGTTTGCAGCTGATACTATGGAAGATGCATTTTCTCCAAGATTTGGATATGATATATTGTGTAATTCTACCTGCACACGAGTTCTGTTCAAATATAAATTTGGTACACCTCTAATAGTATTTGTATTGTATATGGCTGCAAACTTTTCCTACGAAATTCTTTGTAAGTA CAT GGGTTGTAACCTGCTTAACGATCCAATGATTGCTGCTTTAATTAATAAGTTTGTTGCAGGAGAATTTTCTTTAAAAAAAAAAAAAA]
[+] EMBL CF336413             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ATGCTGATTCCTGTGCTTAATGGGACAAGAGAACCTGTATCATAGTGTATGTGTAAAGTTGCAAGGTAAGGGTTGCATCTCTCAATTTCACAATAACGTGCTTGAGCTGCTGAGTAAGTTGGGAGTTGGGAGTTTGCAGCTGATACTATGGAAGATGCATTTTCTCCAAGATTTGGATATGATATATTGTGTAATTCTACCTGCACACGAGTTCTGTTCAAATATAAATTTGGTACACCTCTAATAGTATTTGTATTGTATATGGCTGCAAACTTTTCCTACGAAATTCTTTGTAAGTAGCATGGGGTTGTAACCTGCTTAACGATCCAATGATTGCTGCTTTAATTAATAAGTTTGTTGCAGGAGAATTTTCTTTAAAAAAAAAAA   ]
[+] EMBL BQ908350             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TATGGAAGATGCATTTTCTCCAAGATTTGGATATGATATATTGTGTAATTCTACCTGCACACGAGTTCTGTTCAAATATAAATTTGGTACACCTCTAATAGTATTTGTATTGTATATGGCTGCAAACTTTTCCTACGAAATTCTTTGTAAGTAGCAT GGGTTGTAACCTGCTTAACGATCCCATGATTGCTGCTTTAATTAATAAGTTTGTTGCAGGAAAAAAAAAA                ]




>consensus_14222#0
TTCTCCCACCTCCACCGGCGACGCCACCGCCGCCGCCTCCTCCTCCTCCGCCTCTCTACG
GCAGCCTCGCCGCCGCGCCGCGCAGCGCAGCGCAGAGCAACATGGAAGCGACGGGCGCCG
CCGTATCCGCCTTCTCCACCGCGTCCTCGTCGAGTCCCGCGGCGCCTAGACACGGCCGTC
TCCTGGCGAGCCCCGCGGCGTGGCGCAGCGCACGGACGCTGCCACCACGGGCCGTCGCCT
CCTCCCGCGCGACGGTCCTCGTCTCGAACCCTCCTCCGCCGCCGCTGCCGCCGACACCCG
CTCCTGCTGCGGTCGCGCCCTCCAAGGTCGACCGGTCCGGGCGGTTCTGTAGCCCCCGCG
CCGCTCGCGAGCTCGCGCTGATGATTTCCTACGCGGCTTGCCTTGAGGGCGCCGACGTGG
TGCGGCTCTTCGACCGCAGAATCAGCGCGAGAAGAGAACCTGGCTATGTTTTCGATAAGG
CGTGCGTGGTGAACTACAACCATATGAGCTTCGGTGGGGGACCTCTGGAGGTCGGGACAG
AGGAGGAGGCTGAGAAGCTCATGAGTCAGAACGAGAAGGATTCAGCAAATGAAGCAGAAG
TTCTTTCAGCTCCTCCAAAGCTGGTGTACAACAACTTTGTGTTACGACTGGCTCGAGAAA
TTTTAGTGGCTGTTGCCAGTGGATGGGACAAGCATGTTGATATCATCAACAAAATAACTC
CCCAGAATTGGAAGGACGAACCTGTTGCAAGGATCCTTGAACTTTGTATTCTTCATATTG
CCATGGCAGAGATGACATCAAAAGGAACACCTCACAAAATTGTCATTAACGAGGCTGTGG
ATTTGGCAAAACGGTTCTGTGATGGTGGTGCTCCTCGGGTAATCAATGGATGCCTTCGGA
CATTTGTGAAGGATCACATGAACATTGACACCAGTCAGCCAGCTCCAGCTGAGTCAAAAG
CGTGAAGTTTTTGCAAATATGAAAATATGAATCATCACAAATATGATTCAAAGAATAGAA
GCACGGAGAAAATCCTGCTCTCTTTGTCTGATCTCCTTTGGTTGTTTAAAGATTGATTGG
TGAAGTTGAAAGGAGGCAAACATGCTGGACTTGTGGAGAACTAGAAGTATCTTCAATATT
TAGCTGGTGGTTAGACTAGATATGTTGAGCCATATACTGATGATGCACTCTTCTTGAAGA
ACTAAATGACACTACTTCTAACAGCTTTTGCCATGCTGATTCCTGTGCTTAATGGGACAA
GAGAACCTGTATCATAGTGTATGTGTAAAGTTGCAAGGTAAGGGTTGCATCTCTCAATTT
CACAATAACGTGCTTGAGCTGCTGAGTAAGTTGGGAGTTGGGAGTTTGCAGCTGATACTA
TGGAAGATGCATTTTCTCCAAGATTTGGATATGATATATTGTGTAATTCTACCTGCACAC
GAGTTCTGTTCAAATATAAATTTGGTACACCTCTAATAGTATTTGTATTGTATATGGCTG
CAAACTTTTCCTACGAAATTCTTTGTAAGTAGCATGGGTTGTAACCTGCTTAACGATCCA
ATGATTGCTGCTTTAATTAATAAGTTTGTTGCAGGAAAAAAAAAATTAAAAAAAAAAAAA
A

consensusID : consensus_14222#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 779
fasta sequence

                              [TGTTGCCAGTGGATGGGACAAGCATGTTGATATCATCAACAAAATAACTCCCCAGAATTGGAAGGACGAACCTGTTGCAAGGATCCTTGAACTTTGTATTCTTCATATTGCCATGGCAGAGATGACATCAAAAGGAACACCTCACAAAATTGTCATTAACGAGGCTGTGGATTTGGCAAAACGGTTCTGTGATGGTGGTGCTCCTCGGGTAATCAATGGATGCCTTCGGACATTTGTGAAGGATCACATGAACATTGACACCAGTCAGCCAGCTCCAGCTGAGTCAAAAGCGTGAAGTTTTTGCAAATATGAAAATATGAATCATCACAAATATGATTCAAAGAATAGAAGCACGGAGAAAATCCTGCTCTCTTTGTCTGATCTCCTTTGG-TTGTTTAAAGATTGATTGG-TGAAGTTGAAA-GGAGGCAAACATGCT-GGACTTGTGGAGAACTAGAAGTATCTTCAATATTTAGCTGGTGGTTAGACTAGATATGTTGAGCCATATACTGATGATGCACTCTTCTTGAA-GAACTAAATGACACTACTTCTAACAGCTTTTGCCATGCTGATTCCTGTGCTTAATGGGACAAGAGAACCTGTATCATAGTGTATGTGTAAAGTTGCAAGGTAAGGGTTGCATCTCTCAATTTCACAATAACGTGCTTGAGCTGCTGAGTAAGTTGGGAGTTGGGAGTTTGCAGCTGATACTATGGAAGATGCATTTTCTCCAAGATGAGGGGATGATATATTGTGTAATTCTACCTGCAAAAAAAAAAAGG]

[-] EMBL CB646309             [TGTTGCCAGTGGATGGGACAAGCATGTTGATATCATCAACAAAATAACTCCCCAGAATTGGAAGGACGAACCTGTTGCAAGGATCCTTGAACTTTGTATTCTTCATATTGCCATGGCAGAGATGACATCAAAAGGAACACCTCACAAAATTGTCATTAACGAGGCTGTGGATTTGGCAAAACGGTTCTGTGATGGTGGTGCTCCTCGGGTAATCAATGGATGCCTTCGGACATTTGTGAAGGATCACATGAACATTGACACCAGTCAGCCAGCTCCAGCTGAGTCAAAAGCGTGAAGTTTTTGCAAATATGAAAATATGAATCATCACAAATATGATTCAAAGAATAGAAGCACGGAGAAAATCCTGCTCTCTTTGTCTGATCTCCTTTGG TTGTTTAAAGATTGATTGG TGAAGTTGAAA GGAGGCAAACATGCT GGACTTGTGGAGAACTAGAAGTATCTTCAATATTTAGCTGGTGGTTAGACTAGATATGTTGAGCCATATACTGATGATGCACTCTTCTTGAA GAACTAAATGACACTACTTCTAACAGCTTTTGCCATGCTGATTCCTGTGCTTAATGGGACAAGAGAACCTGTATCATAGTGTATGTGTAAAGTTGCAAGGTAAGGGTTGCATCTCTCAATTTCACAATAACGTGCTTGAGCTGCTGAGTAAGTTGGGAGTTGGGAGTTTGCAGCTGATACTATGGAAGATGCATTTTCTCCAAGATGAGGGGATGATATATTGTGTAATTCTACCTGCAAAAAAAAAAAGG]
[+] EMBL OSS10865A            [                                                                                                                                  AAAGGAACACCTCACAAAATTGTCATTAACGAGGCTGTGGATTTGGCAAAACGGTTCTGTGATGGTGGTGCTCCTCGGGTAATCAATGGATGCCTTCGGACATTTGTGAAGGATCACATGAACATTGACACCAGTCAGCCAGCTCCAGCTGAGTCAAAAGCGTGAAGTTTTTGCAAATATGAAAATATGAATCATCACAAATATGATTCAAAGAATAGAAGCACGGAGAAAATCCTGCTCTCTTTGTCTGATCTCCTTTGGTTTGTTTAAAGATTGATTGGTTGAAGTTGAAANGGNGGCAAACATGCTGGGACTTGTGGNGAACTAGAAGTATCTTCAATATTTAGCTGGTGGTTAGACTAGATATGTTGAGCCATATACTGATGATGCACTCTTCTTGAAGGAACTAAA                                                                                                                                                                                                                                                   ]
[-] EMBL CB967303             [                                                                                                                                                                                             TGATGGTGGTGCTCCTCGGGTAATCAATGGATGCCTTCGGACATTTGTGAAGGATCACATGAACATTGACACCAGTCAGCCAGCTCCAGCTGAGTCAAAAGCGTGAAGTTTTTGCAAATATGAAAATATGAATCATCACCAATATGATTCAAAGAATAGAAGCACGGAGAAAATCCTGCTCTCTTTGTCTGATCTCCTTTGG TTGTTTAAAGATTGATTGG TGAAGTTGAAA GGAGGCCAACATGCT CGACTTGTGGAGAACTAGAAGTATCTTCAATATTTAGCTGGTGGTTAGACTAGATATGTTGAGCCATATACTGATGATGCACTCTTCTTGAA GAACTAAATGACACTACTTCTAACAGCTTTTGCCATGCTGATTCCTGTGCTTAATGGGACAAGAGAACCTGTATCATAGTGTATGTGTAAAGTTGCAAGGTAAGGGTTGCATCT                                                                                                                                         ]




>consensus_14222#1
TGTTGCCAGTGGATGGGACAAGCATGTTGATATCATCAACAAAATAACTCCCCAGAATTG
GAAGGACGAACCTGTTGCAAGGATCCTTGAACTTTGTATTCTTCATATTGCCATGGCAGA
GATGACATCAAAAGGAACACCTCACAAAATTGTCATTAACGAGGCTGTGGATTTGGCAAA
ACGGTTCTGTGATGGTGGTGCTCCTCGGGTAATCAATGGATGCCTTCGGACATTTGTGAA
GGATCACATGAACATTGACACCAGTCAGCCAGCTCCAGCTGAGTCAAAAGCGTGAAGTTT
TTGCAAATATGAAAATATGAATCATCACAAATATGATTCAAAGAATAGAAGCACGGAGAA
AATCCTGCTCTCTTTGTCTGATCTCCTTTGGTTGTTTAAAGATTGATTGGTGAAGTTGAA
AGGAGGCAAACATGCTGGACTTGTGGAGAACTAGAAGTATCTTCAATATTTAGCTGGTGG
TTAGACTAGATATGTTGAGCCATATACTGATGATGCACTCTTCTTGAAGAACTAAATGAC
ACTACTTCTAACAGCTTTTGCCATGCTGATTCCTGTGCTTAATGGGACAAGAGAACCTGT
ATCATAGTGTATGTGTAAAGTTGCAAGGTAAGGGTTGCATCTCTCAATTTCACAATAACG
TGCTTGAGCTGCTGAGTAAGTTGGGAGTTGGGAGTTTGCAGCTGATACTATGGAAGATGC
ATTTTCTCCAAGATGAGGGGATGATATATTGTGTAATTCTACCTGCAAAAAAAAAAAGG

consensusID : consensus_14222#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 444
fasta sequence

                              [ATGGGTTGAAGGAGTAGAAACTTTTGCCAAGCTGATTCCTGGGGTTAATGGGACAAAAGAACCTGTATCATAGTGTATGTGTAAAGTTGCAAGGTAAGGGTTGCATTTTTCAATTTCCCAAAAACGTGCTTGAACTGTTGAGTAAGTTGGGAGTTGGGAGTTTGCAGCTGATACTATGGAAGATGCCTTTTTTCCAAGATTTGGAAATGAAAAATTGGGTAATTTTACCCGCCCCCGAGTTTTGTTCAAAAATAAATTTGGGACCCCTCTAAAAGGATTTGTATTGGAAAAGGCGGCAAACTTTTCCTACGAAATTTTTTGTAAGTAGCATGGGTTGTAACCTGCTTAACGATCCAAAGATTGGTGCTTTAATTAATAAGTTTGGTGCAGGAGAATTTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CF337797             [ATGGGTTGAAGGAGTAGAAACTTTTGCCAAGCTGATTCCTGGGGTTAATGGGACAAAAGAACCTGTATCATAGTGTATGTGTAAAGTTGCAAGGTAAGGGTTGCATTTTTCAATTTCCCAAAAACGTGCTTGAACTGTTGAGTAAGTTGGGAGTTGGGAGTTTGCAGCTGATACTATGGAAGATGCCTTTTTTCCAAGATTTGGAAATGAAAAATTGGGTAATTTTACCCGCCCCCGAGTTTTGTTCAAAAATAAATTTGGGACCCCTCTAAAAGGATTTGTATTGGAAAAGGCGGCAAACTTTTCCTACGAAATTTTTTGTAAGTAGCATGGGTTGTAACCTGCTTAACGATCCAAAGATTGGTGCTTTAATTAATAAGTTTGGTGCAGGAGAATTTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF336414             [ATGGGTTGAAGGAGTAGAAACTTTTGCCAAGCTGATTCCTGGGGTTAATGGGACAAAAGAACCTGTATCATAGGGTATGTGTAAAGTTGCAAGGTAAGGGGTGCATTTTTCAATTTCCCAAAAACGGGCTTGAGCTGCTAAGTAAATTGGGAGTTGGGAGTTTCCACCTTATACTATGGAAAATGCATTTTTTCCAAAATTTGGAAAAGAAAAATTGGGTAATTTTACCCGCCCCCGAGTTTTGTTCAAAAATAAATTTGGGACCCCTCTAAAAGAATTTGTATTGGAAAAGGGGGCAAACTTTTCCTACGAAATTTTTTGTAAGTAGCATGGGTTGTAACCTGCTTAACGATCCAAAGATTGGTGCTTTAATTAAAAAGTTTGGTGCAGGAGAATTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_14222#2
ATGGGTTGAAGGAGTAGAAACTTTTGCCAAGCTGATTCCTGGGGTTAATGGGACAAAAGA
ACCTGTATCATAGTGTATGTGTAAAGTTGCAAGGTAAGGGTTGCATTTTTCAATTTCCCA
AAAACGTGCTTGAACTGTTGAGTAAGTTGGGAGTTGGGAGTTTGCAGCTGATACTATGGA
AGATGCCTTTTTTCCAAGATTTGGAAATGAAAAATTGGGTAATTTTACCCGCCCCCGAGT
TTTGTTCAAAAATAAATTTGGGACCCCTCTAAAAGGATTTGTATTGGAAAAGGCGGCAAA
CTTTTCCTACGAAATTTTTTGTAAGTAGCATGGGTTGTAACCTGCTTAACGATCCAAAGA
TTGGTGCTTTAATTAATAAGTTTGGTGCAGGAGAATTTTTTTTTAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14222#0      TTCTCCCACCTCCACCGGCGACGCCACCGCCGCCGCCTCCTCCTCCTCCGCCTCTCTACG 60
consensus_14222#1      ------------------------------------------------------------
consensus_14222#2      ------------------------------------------------------------
                                                                                   

consensus_14222#0      GCAGCCTCGCCGCCGCGCCGCGCAGCGCAGCGCAGAGCAACATGGAAGCGACGGGCGCCG 120
consensus_14222#1      ------------------------------------------------------------
consensus_14222#2      ------------------------------------------------------------
                                                                                   

consensus_14222#0      CCGTATCCGCCTTCTCCACCGCGTCCTCGTCGAGTCCCGCGGCGCCTAGACACGGCCGTC 180
consensus_14222#1      ------------------------------------------------------------
consensus_14222#2      ------------------------------------------------------------
                                                                                   

consensus_14222#0      TCCTGGCGAGCCCCGCGGCGTGGCGCAGCGCACGGACGCTGCCACCACGGGCCGTCGCCT 240
consensus_14222#1      ------------------------------------------------------------
consensus_14222#2      ------------------------------------------------------------
                                                                                   

consensus_14222#0      CCTCCCGCGCGACGGTCCTCGTCTCGAACCCTCCTCCGCCGCCGCTGCCGCCGACACCCG 300
consensus_14222#1      ------------------------------------------------------------
consensus_14222#2      ------------------------------------------------------------
                                                                                   

consensus_14222#0      CTCCTGCTGCGGTCGCGCCCTCCAAGGTCGACCGGTCCGGGCGGTTCTGTAGCCCCCGCG 360
consensus_14222#1      ------------------------------------------------------------
consensus_14222#2      ------------------------------------------------------------
                                                                                   

consensus_14222#0      CCGCTCGCGAGCTCGCGCTGATGATTTCCTACGCGGCTTGCCTTGAGGGCGCCGACGTGG 420
consensus_14222#1      ------------------------------------------------------------
consensus_14222#2      ------------------------------------------------------------
                                                                                   

consensus_14222#0      TGCGGCTCTTCGACCGCAGAATCAGCGCGAGAAGAGAACCTGGCTATGTTTTCGATAAGG 480
consensus_14222#1      ------------------------------------------------------------
consensus_14222#2      ------------------------------------------------------------
                                                                                   

consensus_14222#0      CGTGCGTGGTGAACTACAACCATATGAGCTTCGGTGGGGGACCTCTGGAGGTCGGGACAG 540
consensus_14222#1      ------------------------------------------------------------
consensus_14222#2      ------------------------------------------------------------
                                                                                   

consensus_14222#0      AGGAGGAGGCTGAGAAGCTCATGAGTCAGAACGAGAAGGATTCAGCAAATGAAGCAGAAG 600
consensus_14222#1      ------------------------------------------------------------
consensus_14222#2      ------------------------------------------------------------
                                                                                   

consensus_14222#0      TTCTTTCAGCTCCTCCAAAGCTGGTGTACAACAACTTTGTGTTACGACTGGCTCGAGAAA 660
consensus_14222#1      ------------------------------------------------------------
consensus_14222#2      ------------------------------------------------------------
                                                                                   

consensus_14222#0      TTTTAGTGGCTGTTGCCAGTGGATGGGACAAGCATGTTGATATCATCAACAAAATAACTC 720
consensus_14222#1      ----------TGTTGCCAGTGGATGGGACAAGCATGTTGATATCATCAACAAAATAACTC 50
consensus_14222#2      ------------------------------------------------------------
                                                                                   

consensus_14222#0      CCCAGAATTGGAAGGACGAACCTGTTGCAAGGATCCTTGAACTTTGTATTCTTCATATTG 780
consensus_14222#1      CCCAGAATTGGAAGGACGAACCTGTTGCAAGGATCCTTGAACTTTGTATTCTTCATATTG 110
consensus_14222#2      ------------------------------------------------------------
                                                                                   

consensus_14222#0      CCATGGCAGAGATGACATCAAAAGGAACACCTCACAAAATTGTCATTAACGAGGCTGTGG 840
consensus_14222#1      CCATGGCAGAGATGACATCAAAAGGAACACCTCACAAAATTGTCATTAACGAGGCTGTGG 170
consensus_14222#2      ------------------------------------------------------------
                                                                                   

consensus_14222#0      ATTTGGCAAAACGGTTCTGTGATGGTGGTGCTCCTCGGGTAATCAATGGATGCCTTCGGA 900
consensus_14222#1      ATTTGGCAAAACGGTTCTGTGATGGTGGTGCTCCTCGGGTAATCAATGGATGCCTTCGGA 230
consensus_14222#2      ------------------------------------------------------------
                                                                                   

consensus_14222#0      CATTTGTGAAGGATCACATGAACATTGACACCAGTCAGCCAGCTCCAGCTGAGTCAAAAG 960
consensus_14222#1      CATTTGTGAAGGATCACATGAACATTGACACCAGTCAGCCAGCTCCAGCTGAGTCAAAAG 290
consensus_14222#2      -----------------ATGG--GTTGA-AGGAGTAGA--AACTTTTGCCAAGCTGATTC 38
                                        ***    **** *  ***     * **   **  **   *   

consensus_14222#0      CGTGAAGTTTTTGCAAATATGAAAATATGAATCATCACAAATATGATTCAAAGAATAGAA 1020
consensus_14222#1      CGTGAAGTTTTTGCAAATATGAAAATATGAATCATCACAAATATGATTCAAAGAATAGAA 350
consensus_14222#2      C-TGGGGTTAATG-GGACAAAAGAACCTGTATCATAGTGTATGTG---TAAAGTTGCAAG 93
                       * **  ***  **   * *  * **  ** *****     ** **    ****     * 

consensus_14222#0      GCACGGAGAAAATCCTGCTCTCTTTGTCTGATCTCCTTTGGTTGTTTAAAGATTGATTGG 1080
consensus_14222#1      GCACGGAGAAAATCCTGCTCTCTTTGTCTGATCTCCTTTGGTTGTTTAAAGATTGATTGG 410
consensus_14222#2      GTAAGGGTTGCATTTTTCAATTTCCCAAAAACGTGCTTGAACTGTT----GAGTAAGTTG 149
                       * * **     **  * *  * *       *  * ***    ****    ** * * * *

consensus_14222#0      TGAAGTTGAAAGGAGGCAAACATGCTGGACTTGTGGAGAACTAGAAGTATCTTCAATATT 1140
consensus_14222#1      TGAAGTTGAAAGGAGGCAAACATGCTGGACTTGTGGAGAACTAGAAGTATCTTCAATATT 470
consensus_14222#2      -GGAGTTGGGAGTTTGCA-----GCTGATACTATGGAAGAT--GCCTTTTTTCCAAGATT 201
                        * *****  **   ***     ****    * ****  *   *   * * * *** ***

consensus_14222#0      TAGCTGGTGGTTAGACTAGATATGTTGAGCCATATACTGATGATGCACTCTTCTTGAAGA 1200
consensus_14222#1      TAGCTGGTGGTTAGACTAGATATGTTGAGCCATATACTGATGATGCACTCTTCTTGAAGA 530
consensus_14222#2      TGG--AAATGAAAAATTGGGTAATTTTACCCGCCCCCGAGT--------TTTGTTCAAAA 251
                       * *      *  * * * * **  ** * **     *   *         ** ** ** *

consensus_14222#0      ACTAAATGACACTACTTCTAACAGCTTTTGCCATGCTGATTCCTGTGCTTAATGGGACAA 1260
consensus_14222#1      ACTAAATGACACTACTTCTAACAGCTTTTGCCATGCTGATTCCTGTGCTTAATGGGACAA 590
consensus_14222#2      ATAAATTTGGGACCCCTCTAAAAG-------------GATT--TGTATTGGAAAAGGCG- 295
                       *  ** *       * ***** **             ****  ***  *  *   * *  

consensus_14222#0      GAGAACCTGTATCATAGTGTATGTGTAAAGTTGCAAGGTAAGGGTTGCATCTCTCAATTT 1320
consensus_14222#1      GAGAACCTGTATCATAGTGTATGTGTAAAGTTGCAAGGTAAGGGTTGCATCTCTCAATTT 650
consensus_14222#2      GCAAACTTTTCCTACGAAATTTTTTGTAAGTAGCATGGGTTGTAACCTGCTTAACGATCC 355
                       *  *** * *   *     * * *   **** *** **   *         *  * **  

consensus_14222#0      CACAATAACGTGCTTGAGCTGCTGAGTAAGTTGGGAGTTGGGAGTTTGCAGCTGATACTA 1380
consensus_14222#1      CACAATAACGTGCTTGAGCTGCTGAGTAAGTTGGGAGTTGGGAGTTTGCAGCTGATACTA 710
consensus_14222#2      AAAGATTG-GTGCTTTAATT----AATAAGTTTGGTGCAGGAGAATTTTTTTTTAAAAAA 410
                        *  **   ****** *  *    * ****** ** *  **    **     * * *  *

consensus_14222#0      TGGAAGATGCATTTTCTCCAAGATTTGGATATGATATATTGTGTAATTCTACCTGCACAC 1440
consensus_14222#1      TGGAAGATGCATTTTCTCCAAGATGAGGGGATGATATATTGTGTAATTCTACCTGCAAAA 770
consensus_14222#2      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------------------------- 444
                          ** *   *        ** *       *  *                          

consensus_14222#0      GAGTTCTGTTCAAATATAAATTTGGTACACCTCTAATAGTATTTGTATTGTATATGGCTG 1500
consensus_14222#1      AAAAAAAGG--------------------------------------------------- 779
consensus_14222#2      ------------------------------------------------------------
                                                                                   

consensus_14222#0      CAAACTTTTCCTACGAAATTCTTTGTAAGTAGCATGGGTTGTAACCTGCTTAACGATCCA 1560
consensus_14222#1      ------------------------------------------------------------
consensus_14222#2      ------------------------------------------------------------
                                                                                   

consensus_14222#0      ATGATTGCTGCTTTAATTAATAAGTTTGTTGCAGGAAAAAAAAAATTAAAAAAAAAAAAA 1620
consensus_14222#1      ------------------------------------------------------------
consensus_14222#2      ------------------------------------------------------------
                                                                                   

consensus_14222#0      A 1621
consensus_14222#1      -
consensus_14222#2      -