cluster # 14224

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Oryza sativa
cluster # 14224 cluster # 14224 Sequences # 15 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_14224#0 length = 1484 sequences # 13

consensus_14224#1 length = 671 sequences # 1
consensus_14224#2 length = 81 sequences # 1

consensusID : consensus_14224#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 13
consensus length = 1484
fasta sequence

                              [CAAATTAAAATTAAACCCACAATCGAAGTAAAAAGATTTCTCATACGTAAGCAGAGACCACACACACACACACTTTATGCTTGGCTGCAAGGCGTTGAAGCAGAGCGGCCGTGCTGTTATGTTTAGCTCTCCTTAGTATAGCAGCAATAAACAGGAGATTACGACCTGCGATCCAGATTACAATTACTAACTTGTGTCCTAATTAATCAACCCGATGGACATCCAACCGAACAGACACGAGGGTTATCTTCCTTTTCTCTTCTTCTTCTTCTTCTTTTGCGTGGGGAGCGATTAACACGCGTGCGTCGCTGATTGGCTCGCCATGGCTATAAATCTCGAGGTCGGTTGCCCCTTG-CT-GTCCACTGCCTGAGAAGCCGAGACCACTACAAGCAGCAACTAGCTTAGCTAGCTAGCTACTGGTGATCAGGCACGAGCTAGCCGGCCATGGCGAGGCGTCGCCATGCTTGCTTTCTTCTCCTGCTGCCTCTGCTGGTGCTGCAGCTTCTTCTTGCTGGGGGAAGCTTGGTTGATGATCTTCCTGCTGCAACTCATCAGGTGCCGAGGTTAGTAGGGCCACAGCGCAAGTTACAGCAGCTTCCAAACCCAAGGCCACAGCCGCAACCATTGCCCCAGCCAAACCCAAATCCACAGCCACAACCACTCCCACAGCCACAGCCACAGCCACAACCACAACCACAACCTCTGCCACAACCGCAGCCGCAACCACAGCCTTTACCGCTACCAGGCCCACAACCATTACCGCAACCCGGCCCGCAGCCGAACCCAAACCCCCAACCGTTACCACAGCCAAACCCAAATCCCCAGCCTTTACCTCAGCCAGACCCGAACGCTCCGCCGTTGCCTCTGCCGCAGCCTAA-CCCAAACAACCCGCAACCTCTGCCGC-AGCCAGACCCTAACGCGCCATCACTACC-TCTGCCGCAGCC-AGACCCAAACGCGC-CACCACTGCCTCTGCCACAACCTGATCCGAACGCGCCACCACAACCTTTGCCGCAACCAGACCCAAACAACCCTCAACCTTTACCGCAACCTGACCCTAACGCACCACCACAGCCTTTGCCGCAACCAGA-CCCTAACTCGCCGCCACAGCCTTTGCCGCAACCAGACCCGAACACG--CCTCCTGGCCAACAAA-TTAATGCAAAGATATCATCACAGCCGGA-TTCTATTGGTGGAGCCAGAACTTTAT-ATCCATACGGTGTAATATACAATCTCATGCCATTGTTTAGCCTATTCTTCTATATGTTTTGATAGTAAGGAGAGGCTTATTGTTGTAAATAAGCGTGCTGAGTTACCATTTTTAGATTGCATGTATATACACATTGCCATGTTGATAGGTTTGCTATGTTATCTTTTTTTTTTGTTTGAGATGGAGGTTTGCTATGTACTGCACTGGCTTGTACCCTG-ATATTTTTGTGTATGTTAATACACACCTATTTACCTCTTTGTGTAAAAAAAAAAAAAAAAAA]

[-] EMBL CA764483             [CAAATTAAAATTAAACCCACAATCGAAGTAAAAAGATTTCTCATACGTAAGCAGAGACCACACACACACACACTTTATGCTTGGCTGCAAGGCGTTGAAGCAGAGCGGCCGTGCTGTTATGTTTAGCTCTCCTTAGTATAGCAGCAATAAACAGGAGATTACGACCTGCGATCCAGATTACAATTACTAACTTGTGTCCTAATTAATCAACCCGATGGACATCCAACCGAACAGACACGAGGGTTATCTTCCTTTTC   TCTTCTTCTTCTTCTTTTGCGTGGGGAGCGATTAACACGCGTGCGTCGCTGATTGGCTTGCCATGGCTATAAATCTCGAGGTCGGTTGCCCCTTGTCTCGTCCTCTGCCccttgtctc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CA754213             [                                                                                                                                                                                                                                          ACACGAGGGTTATCTTCCTTTTCTCTTCTTCTTCTTCTTCTTTTGCGTGGGGAGCGATTAACACGCGTGCGTCGCTGATTGGCTCGCCATGGCTATAAATCTCGAGGTCGGTTGCCCCTTG CT GTCCACTGCCTGAGAAGCCGAGACCACTACAAGCAGCAACTAGCTTAGCTAGCTAGCTACTGGTGATCAGGCACGAGCTAGCCGGCCATGGCGAGGCGTCGCCATGCTTGCTTTCTTCTCCTGCTGCCTCTGCTGGTGCTGCAGCTTCTTCTTGCTGGGGGAAGCTTGGTTGATGATCTTCCTGCTGCAACTCATCAGGTGCCGAGGTTAGTAGGGCCACAGCGCAAGTTACAGCAGCTTCCAAACCCAAGGCCACAGCCGCAACCATTGCCCCAGCCAAACCCAAATCCACAGCCACAACCACTCCCACAGCCACAGCCACAG      CCACAACCACAACCTCTGCCACAACCGCAGCCGCAACCACAGCCTTTGCCGCTACCAGGCCCACAACCATTACCGCAACCCGGCCCGCAGCCGAACCCAAACCCCCAGCCGTTACCACAGCCAAACCCAAATCCCCAGCCTTTATCTCAGCCAGACCCTAACGCTCCGCCGTTGCCTCTGCCGCAACCTAACCCCAAACTACCCGTATCCTCTGTCGCAATCTATACCCTAACGCGCCACCACTGCCTTCTGCTGTAGCCTAGACCTCAACGCGCAAACAACTGCat                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AK068117             [                                                                                                                                                                                                                                                    TATCTTCCTTTTCTCTTCTTCTTCTTCTTCTTTTGCGTGGGGAGCGATTAACACGCGTGCGTCGCTGATTGGCTCGCCATGGCTATAAATCTCGAGGTCGGTTGCCCCTTG CT GTCCACTGCCTGAGAAGCCGAGACCACTACAAGCAGCAACTAGCTTAGCTAGCTAGCTACTGGTGATCAGGCACGAGCTAGCCGGCCATGGCGAGGCGTCGCCATGCTTGCTTTCTTCTCCTGCTGCCTCTGCTGGTGCTGCAGCTTCTTCTTGCTGGGGGAAGCTTGGTTGATGATCTTCCTGCTGCAACTCATCAGGTGCCGAGGTTAGTAGGGCCACAGCGCAAGTTACAGCAGCTTCCAAACCCAAGGCCACAGCCGCAACCATTGCCCCAGCCAAACCCAAATCCACAGCCACAACCACTCCCACAGCCACAGCCACAGCCACAACCACAACCACAACCTCTGCCACAACCGCAGCCGCAACCACAGCCTTTACCGCTACCAGGCCCACAACCATTACCGCAACCCGGCCCGCAGCCGAACCCAAACCCCCAACCGTTACCACAGCCAAACCCAAATCCCCAGCCTTTACCTCAGCCAGACCCGAACGCTCCGCCGTTGCCTCTGCCGCAGCCTAA CCCAAACAACCCGCAACCTCTGCCGC AGCCAGACCCTAACGCGCCATCACTACC TCTGCCGCAGCC AGACCCAAACGCGC CACCACTGCCTCTGCCACAACCTGATCCGAACGCGCCACCACAACCTTTGCCGCAACCAGACCCAAACAACCCTCAACCTTTACCGCAACCTGACCCTAACGCACCACAACAGCCTTTGCCGCAACCAGA CCCTAACTCGCCGCCACAGCCTTTGCCGCAACCAGACCCGAACACG  CCTCCTGGCCAACAAA TTAATGCAAAGATATCATCACAGCCGGA TTCTATTGGTGGAGCCAGAACTTTAT ATCCATACGGTGTAATATACAATCTCATGCCATTGTTTAGCCTATTCTTCTATATGTTTTGATAGTAAGGAGAGGCTTATTGTTGTAAATAAGCGTGCTGAGTTACCATTTTTAGATTGCATGTATATACACATTGCCATGTTGATAGGTTTGCTATGTTATCTTTTTTTTTTGTTTGAGATGGAGGTTTGCTATGTACTGCACTGGCTTGTACCCTG ATATTTTTGTGTATGTTAATACACACCTATTTACCT                          ]
[+] EMBL CF311500             [                                                                                                                                                                                                                                                                                                                                                                                   AGAAGCCGAGACCACTACAAGCAGCAACTAGCTTAGCTAGCTAGCTACTGGTGATCAGGCACGAGCTAGCCGGCCATGGCGAGGCGTCGCCATGCTTGCTTTCTTCTCCTGCTGCCTCTGCTGGTGCTGCAGCTTCTTCTTGCTGGGGGAAGCTTGGTTGATGATCTTCCTGCTGCAACTCATCAGGTGCCGAGGTTAGTAGGGCCACAGCGCAAGTTACAGCAGCTTCCAAACCCAAGGCCACAGCCGCAACCATTGCCCCAGCCAAACCCAAATCCACAGCCACAACCACTCCCACAGCCACAGCCACAGCCACAACCACAACCACAACCTCTGCCACAACCGCAGCCGCAACCACAGCCTTTACCGCTACCAGGCCCACAACCATTACCGCAACCCGGCCCGCAGCCGAACCCAAACCCCCAACCGTTACCACAGCCAAACCCAAATCCCCAGCCTTTACCTCAGCCAGACCCGAACGCTCCGCCGTCGCCTCTGCCGCAGCCTAA CCCAAACAACCCGCAACCTCTGCCGC AGCCAGACCCTAACGCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AK104498             [                                                                                                                                                                                                                                                                                                                                                                                    GAAGCCGAGACCACTACAAGCAGCAACTAGCTTAGCTAGCTAGCTACTGGTGATCAGGCACGAGCTAGCCGGCCATGGCGAGGCGTCGCCATGCTTGCTTTCTTCTCCTGCTGCCTCTGCTGGTGCTGCAGCTTCTTCTTGCTGGGGGAAGCTTGGTTGATGATCTTCCTGCTGCAACTCATCAGGTGCCGAGGTTAGTAGGGCCACAGCGCAAGTTACAGCAGCTTCCAAACCCAAGGCCACAGCCGCAACCATTGCCCCAGCCAAACCCAAATCCACAGCCACAACCACTCCCACAGCCACAGCCACAGCCACAACCACAACCACAACCTCTGCCACAACCGCAGCCGCAACCACAGCCTTTACCGCTACCAGGCCCACAACCATTACCGCAACCCGGCCCGCAGCCGAACCCAAACCCCCAACCGTTACCACAGCCAAACCCAAATCCCCAGCCTTTACCTCAGCCAGACCCGAACGCTCCGCCGTTGCCTCTGCCGCAGCCTAA CCCAAACAACCCGCAACCTCTGCCGC AGCCAGACCCTAACGCGCCATCACTACC TCTGCCGCAGCC AGACCCAAATGCGC CACCACTGCCTCTGCCACAACCTGATCCGAACGCGCCACCACAACCTTTGCCGCAACCAGACCCAAACAACCCTCAACCTTTACCGCAACCTGACCCTAACGCACCACCACAGCCTTTGCCGCAACCAGA CCCTAACTCGCCGCCACAGCCTTTGCCGCAACCAGACCCGAACACG  CCTCCTGGCCAACAAA TTAATGCAAAGATATCATCACAGCCGGA TTCTATTGGTGGAGCCAGAACTTTAT ATCCATACGGTGTAATATACAATCTCATGCCATTGTTTAGCCTATTCTTCTATATGTTTTGATAGTAAGGAGAGGCTTATTGTTGTAAATAAGCGTGCTGAGTTACCATTTTTAGATTGCATGTATATACACATTGCCATGTTGATAGGTTTGCTATGTTATCTTTTTTTTTTGTTTGAGATGGAGGTTTGCTATGTACTGCACTGGCTTGTACCCTG ATATTTTTGTGTATGTTAATACACACCTATTTAC                            ]
[+] EMBL AK104803             [                                                                                                                                                                                                                                                                                                                                                                                    GAAGCCGAGACCACTACAAGCAGCAACTAGCTTAGCTAGCTAGCTACTGGTGATCAGGCACGAGCTAGCCGGCCATGGCGAGGCGTCGCCATGCTTGCTTTCTTCTCCTGCTGCCTCTGCTGGTGCTGCAGCTTCTTCTTGCTGGGGGAAGCTTGGTTGATGATCTTCCTGCTGCAACTCATCAGGTGCCGAGGTTAGTAGGGCCACAGCGCAAGTTACAGCAGCTTCCAAACCCAAGGCCACAGCCGCAACCATTGCCCCAGCCAAACCCAAATCCACAGCCACAACCACTCCCACAGCCACAGCCACAGCCACAACCACAACCACAACCTCTGCCACAACCGCAGCCGCAACCACAGCCTTTACCGCTACCAGGCCCACAACCATTACCGCAACCCGGCCCGCAGCCGAACCCAAACCCCCAACCGTTACCACAGCCAAACCCAAATCCCCAGCCTTTACCTCAGCCAGACCCGAACGCTCCGCCGTTGCCTCTGCCGCAGCCTAA CCCAAACAACCCGCAACCTCTGCCGC AGCCAGACCCTAACGCGCCATCACTACC TCTGCCGCAGCC AGACCCAAACGCGC CACCACTGCCTCTGCCACAACCTGATCCGAACGCGCCACCACAACCTTTGCCGCAACCAGACCCAAACAACCCTCAACCTTTACCGCAACCTGACCCTAACGCACCACCACAGCCTTTGCCGCAACCAGA CCCTAACTCGCCGCCACAGCCTTTGCCGCAACCAGACCCGAACACG  CCTCCTGGCCAACAAA TTAATGCAAAGATATCATCACAGCCGGA TTCTATTGGTGGAGCCAGAACTTTAT ATCCATACGGTGTAATATACAATCTCATGCCATTGTTTAGCCTATTCTTCTATATGTTTTGATAGTAAGGAGAGGCTTATTGTTGTAAATAAGCGTGCTGAGTTACCATTTTTAGATTGCATGTATATACACATTGCCATGTTGATAGGTTTGCTATGTTATCTTTTTTTTTTGTTTGAGATGGAGGTTTGCTATGTACTGCACTGGCTTGTACCCTG ATATTTTTGTGTATGTTAATACACACCTATTTAC                            ]
[+] EMBL CF318123             [                                                                                                                                                                                                                                                                                                                                                                                    GAAGCCGAGACCACTACAAGCAGCAACTAGCTTAGCTAGCTAGCTACTGGTGATCAGTCACGAGCTAGCCGGCCATGGCGAGGCGTCGCCATGCTTGCTTTCTTCTCCTGCTGCCTCTGCTGGTGCTGCAGCTTCTTCTTGCTGGGGGAAGCTTGGTTGATGATCTTCCTGCTGCAACTCATCAGGTGCCGAGGTTAGTAGGGCCACAGCGCAAGTTACAGCAGCCTCCAAACCCAAGGCCACAGCCGCAACCATTGCCCCAGCCAAACCCAAATCCACAGCCACAACCACTCCCACAGCCACAGCCACAGCCACAACCACAACCACAACCTCTGCCACAACCGCAGCCGCAACCACAGCCTTTACCGCTACCAGGCCCACAACCATTACCGCAACCCGGCCCGCAGCCGAACCCAAACCCCCAACCGTTACCACAGCCAAACCCAAATCCCCAGCCTTTACCTCAGCCAGACCCGAACGCTCCGCCGTTGCCTCTGCCGCAGCCTAA CCCAAACAACCCGCAACCTCTGCCGC AGCCAGACCCTAACGCGCCATCACTACC TCTGCCGCAGCC AGACCCAAACGCGC CACCACTGCCTCTGCCACAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AK106177             [                                                                                                                                                                                                                                                                                                                                                                                              CCACTACAAGCAGCAACTAGCTTAGCTAGCTAGCTACTGGTGATCAGGCACGAGCTAGCCGGCCATGGCGAGGCGTCGCCATGCTTGCTTTCTTCTCCTGCTGCCTCTGCTGGTGCTGCAGCTTCTTCTTGCTGGGGGAAGCTTGGTTGATGATCTTCCTGCTGCAACTCATCAGGTGCCGAGGTTAGTAGGGCCACAGCGCAAGTTACAGCAGCTTCCAAACCCAAGGCCACAGCCGCAACCATTGCCCCAGCCAAACCCAAATCCACAGCCACAACCACTCCCACAGCCACAGCCACAGCCACAACCACAACCACAACCTCTGCCACAACCGCAGCCGCAACCACAGCCTTTACCGCTACCAGGCCCACAACCATTACCGCAACCCGGCCCGCAGCCGAACCCAAACCCCCAACCGTTACCACAGCCAAACCCAAATCCCCAGCCTTTACCTCAGCCAGACCCGAACGCTCCGCCGTTGCCTCTGCCGCAGCCTAA CCCAAACAACCCGCAACCTCTGCCGC AGCCAGACCCTAACGCGCCATCACTACC TCTGCCGCAGCC AGACCCAAACGCGC CACCACTGCCTCTGCCACAACCTGATCCGAACGCGCCACCACAACCTTTGCCGCAACCAGACCCAAACAACCCTCAACCTTTACCGCAACCTGACCCTAACGCACCACCACAGCCTTTGCCGCAACCAGA CCCTAACTCGCCGCCACAGCCTTTGCCGCAACCAGACCCGAACACG  CCTCCTGGCCAACAAA TTAATGCAAAGATATCATCACAGCCGGA TTCTATTGGTGGAGCCAGAACTTTAT ATCCATACGGTGTAATATACAATCTCATGCCATTGTTTAGCCTATTCTTCTATATGTTTTGATAGTAAGGAGAGGCTTATTGTTGTAAATAAGCGTGCTGAGTTACCATTTTTAGATTGCATGTATATACACATTGCCATGTTGATAGGTTTGCTATGTTATCTTTTTTTTTTGTTTGAGATGGAGGTTTGCTATGTACTGCACTGGCTTGTACCCTG ATATTTTTGTGTATGTTAATACACACCTATTTAC                            ]
[+] EMBL C27696               [                                                                                                                                                                                                                                                                                                                                                                                                           CAACTAGCTTAGCTAGCTAGCTACTGGTGATCAGGCACGANCTAGCCGGCCATGGCGAGGCGTCGCCATGCTTGCTTTNTNCTCCTGCTGCCTCTNCTGGTGCTGCAGCTTCTCNTTGCTGGGGGAAGCTTGGTTNATGATCTTCCTGCTGCAACTAATCAGGTGCCGAGGTTAGTAGGGCCACAGCGCAAGTAACAGCAGCTTCCAAACCCAAGGCCAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CB631750             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ACCATTACCGCAACCCGGCCCGCAGCCGAACCCAAACCCCCAGCCGTTACCACAGCCAAACCCAAATCCCCAGCCTTTACCTCAGCCAGACCCGAACGCTCCGCCGTTGCCTCTGCCGCAGCCTAA CCCAAACAACCCGCAACCTCTGCCGC AGCCAGACCCTAACGCGCCACCACTGCC TCTGCCGCAGCC AGACCCAAATGCGC CACCACTGCCTCTGCCACAACCTGACCCGAACGCGCCACCAAAACCTTTGCCGCAACCAGACCCAAACAACCCTCAACCTTTACCGCAACCTGACCCTAATGCACCACCACAGCCTTTGCCGCAACCAGA CCCTAACGCACCGCCACAGCCTTTACAGCAACCAGACCCGAACACG  CCTCCTGGCCAACAAA TTAATGCAAAGATATCATCACAGCCGGA TTCTATTGGTGGAGCCAGAACTTTAT ATCCATACGGTGTAATATACAATCTCATGCCATTGTTTAGCCTATTCTTCTATATGTTTTGATAGTACGGAGAGGCTTATTGTTGTAAATAAGCGTGCTGAGTTACCATTTTTAGATTGCATGTATATACACATTGCCATGTTGATAGGTTTGCGAGGTTATCTTTTTTTTTTGTTTGAGATGGAGGTTTGCTATGTACTGCACTGGCTTGTACCCTG ATATTTTTGTGTATGTTAATACACACCTATTTACCTCTTTGTGT                  ]
[+] EMBL AU089675             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CCGCAACCTGACCCTAACGCACCACCACAGCCTTTGCCGCAACCAGA CCCTAACTCGCCGCCACAGCCTTTGCCGCAACCAGACCCGAACACG  CCTCCTGGCCTACAAA TTAATGCAAAGATATCATCACAGCCGGA TTCTATTGGTGGAGCCAGAACTTTAT ATCCATACGGTGTAATATACAATCTCATGCCATTGTTTAGCCTATTCTTCTATATGTTTTGATAGTAAGGAGAGGCTTATTGTTGTAAATAAGCGTGCTGAGTTACCATTTTTAGATTGCATGTATATTCACATTGCCATGTTGATAGGTTTGCGATGTTATCTTTTCTTTTTGTTTGAGATGGAGGTTTGCTATGTACTGCACTGGCTTGTACCCTGAAGGTTTTTGTGTATGTTAAAACCCACCTATTTAaaaa                         ]
[-] EMBL CF307671             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GCAACCAGACCCCTAACTCGCCGCCACAGCCTTTGCCGCAACCAGACCCGAACACGCCCCTCCTGGCCAACAAANTTAATGCAAAGATATCATCACAGCCGGATTTCTATTGGTGGAGCCAGAACTTTATAATCCATACGGTGTAATATACAATCTCATGCCATTGTTTAGCCTATTCTTCTATATGTTTTGATAGTAAGGAGAGGCTTATTGTTGTAAATAAGCGTGCTGAGTTACCATTTTTAGATTGCATGTATATACACATTGCCATGTTGATAGGTTTGCTATGTTATCTTTTTTTTTTGTTTGAGACGAAGGTTTGCTATGTACTGCACTGGCTTGTACCCTG ATATTTTTGTGTATGTTAATACACACCTATTTAaaaaaaaa                     ]
[+] EMBL AU164834             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TATTGGTGGANCCAGAACTTTAT ATCCATACGGNGTAATATACAATCTCATGCCATTGTTTAGCCTATTCTTCTATATGTTTTGATAGTAAGGAGAGGCTTATTGTTGTAAATAAGCGTGCTGAGTTACCATTTTTAGATTGCATGTATATACACATTGCCATGTTGATAGGTTTGCTATGTTATCTTTTTTTTTTGTTTGAGATGGAGGTTTGCTATGTACTGCACTGGNTTGTACCCTG ATATTTTTGTGTATGTTAATACACACCTNTTTACCTCTTTGTGTAAAAAAAAAAAAAAAAAA]




>consensus_14224#0
CAAATTAAAATTAAACCCACAATCGAAGTAAAAAGATTTCTCATACGTAAGCAGAGACCA
CACACACACACACTTTATGCTTGGCTGCAAGGCGTTGAAGCAGAGCGGCCGTGCTGTTAT
GTTTAGCTCTCCTTAGTATAGCAGCAATAAACAGGAGATTACGACCTGCGATCCAGATTA
CAATTACTAACTTGTGTCCTAATTAATCAACCCGATGGACATCCAACCGAACAGACACGA
GGGTTATCTTCCTTTTCTCTTCTTCTTCTTCTTCTTTTGCGTGGGGAGCGATTAACACGC
GTGCGTCGCTGATTGGCTCGCCATGGCTATAAATCTCGAGGTCGGTTGCCCCTTGCTGTC
CACTGCCTGAGAAGCCGAGACCACTACAAGCAGCAACTAGCTTAGCTAGCTAGCTACTGG
TGATCAGGCACGAGCTAGCCGGCCATGGCGAGGCGTCGCCATGCTTGCTTTCTTCTCCTG
CTGCCTCTGCTGGTGCTGCAGCTTCTTCTTGCTGGGGGAAGCTTGGTTGATGATCTTCCT
GCTGCAACTCATCAGGTGCCGAGGTTAGTAGGGCCACAGCGCAAGTTACAGCAGCTTCCA
AACCCAAGGCCACAGCCGCAACCATTGCCCCAGCCAAACCCAAATCCACAGCCACAACCA
CTCCCACAGCCACAGCCACAGCCACAACCACAACCACAACCTCTGCCACAACCGCAGCCG
CAACCACAGCCTTTACCGCTACCAGGCCCACAACCATTACCGCAACCCGGCCCGCAGCCG
AACCCAAACCCCCAACCGTTACCACAGCCAAACCCAAATCCCCAGCCTTTACCTCAGCCA
GACCCGAACGCTCCGCCGTTGCCTCTGCCGCAGCCTAACCCAAACAACCCGCAACCTCTG
CCGCAGCCAGACCCTAACGCGCCATCACTACCTCTGCCGCAGCCAGACCCAAACGCGCCA
CCACTGCCTCTGCCACAACCTGATCCGAACGCGCCACCACAACCTTTGCCGCAACCAGAC
CCAAACAACCCTCAACCTTTACCGCAACCTGACCCTAACGCACCACCACAGCCTTTGCCG
CAACCAGACCCTAACTCGCCGCCACAGCCTTTGCCGCAACCAGACCCGAACACGCCTCCT
GGCCAACAAATTAATGCAAAGATATCATCACAGCCGGATTCTATTGGTGGAGCCAGAACT
TTATATCCATACGGTGTAATATACAATCTCATGCCATTGTTTAGCCTATTCTTCTATATG
TTTTGATAGTAAGGAGAGGCTTATTGTTGTAAATAAGCGTGCTGAGTTACCATTTTTAGA
TTGCATGTATATACACATTGCCATGTTGATAGGTTTGCTATGTTATCTTTTTTTTTTGTT
TGAGATGGAGGTTTGCTATGTACTGCACTGGCTTGTACCCTGATATTTTTGTGTATGTTA
ATACACACCTATTTACCTCTTTGTGTAAAAAAAAAAAAAAAAAA

consensusID : consensus_14224#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 671
fasta sequence

                              [CACTGACATGGCTGAAGGAGTAGAAAACTGTCTGAGAAGCCGAGACCACTACAAGCAGCAACTAGCTTAGCTAGCTAGCTACTGGTGATCAGGCACGAGCTAGCCGGCCATGGCGAGGCGTCGCCATGCTTGCTTTCTTCTCCTGCTGCCTCTGCTGGTGCTGCAGCTTCTTCTTGCTGGGGGAATCTTGGTTGATGATCTTCCTGCTGCAACTCATCAGGTGCCGAGGTTAGTAGGGCCACAGCGCAAGTTACAGCAGCTTCCAAACCCAAGGCCACAGCCGCAACCATTGCCCCAGCCAAACCCAAATCCACAGCCACAACCACTCCCACAGCCACAGCCACAGCCACAACCACAACCACAACCTCTGCCACAACCGCAGCCGCAACCACAGCCTTTACCGCTACCAGGCCCACAACCATTACCGCAACCCGGCCCGCAGCCGAACCCAAACCCCCAACCGTTACCACAGCCAAACCCAAATCCCCAGCCTTTACCTCAGCCAGACCCGAACGCTCCGCCGTTGCCTCTGCCGCAGCCTAACCCAAACAACCCGCAACCTCTGCCGCAGCCAGACCCTAACGCGCCATCACTACCTCTGCCGCAGCCAGACCCAAACGCGCCACCACTGCCTCTGCCACAACCTGATCCGAACGCGCCACCACAACCTT]

[+] EMBL CF307672             [CACTGACATGGCTGAAGGAGTAGAAAACTGTCTGAGAAGCCGAGACCACTACAAGCAGCAACTAGCTTAGCTAGCTAGCTACTGGTGATCAGGCACGAGCTAGCCGGCCATGGCGAGGCGTCGCCATGCTTGCTTTCTTCTCCTGCTGCCTCTGCTGGTGCTGCAGCTTCTTCTTGCTGGGGGAATCTTGGTTGATGATCTTCCTGCTGCAACTCATCAGGTGCCGAGGTTAGTAGGGCCACAGCGCAAGTTACAGCAGCTTCCAAACCCAAGGCCACAGCCGCAACCATTGCCCCAGCCAAACCCAAATCCACAGCCACAACCACTCCCACAGCCACAGCCACAGCCACAACCACAACCACAACCTCTGCCACAACCGCAGCCGCAACCACAGCCTTTACCGCTACCAGGCCCACAACCATTACCGCAACCCGGCCCGCAGCCGAACCCAAACCCCCAACCGTTACCACAGCCAAACCCAAATCCCCAGCCTTTACCTCAGCCAGACCCGAACGCTCCGCCGTTGCCTCTGCCGCAGCCTAACCCAAACAACCCGCAACCTCTGCCGCAGCCAGACCCTAACGCGCCATCACTACCTCTGCCGCAGCCAGACCCAAACGCGCCACCACTGCCTCTGCCACAACCTGATCCGAACGCGCCACCACAACCTT]




>consensus_14224#1
CACTGACATGGCTGAAGGAGTAGAAAACTGTCTGAGAAGCCGAGACCACTACAAGCAGCA
ACTAGCTTAGCTAGCTAGCTACTGGTGATCAGGCACGAGCTAGCCGGCCATGGCGAGGCG
TCGCCATGCTTGCTTTCTTCTCCTGCTGCCTCTGCTGGTGCTGCAGCTTCTTCTTGCTGG
GGGAATCTTGGTTGATGATCTTCCTGCTGCAACTCATCAGGTGCCGAGGTTAGTAGGGCC
ACAGCGCAAGTTACAGCAGCTTCCAAACCCAAGGCCACAGCCGCAACCATTGCCCCAGCC
AAACCCAAATCCACAGCCACAACCACTCCCACAGCCACAGCCACAGCCACAACCACAACC
ACAACCTCTGCCACAACCGCAGCCGCAACCACAGCCTTTACCGCTACCAGGCCCACAACC
ATTACCGCAACCCGGCCCGCAGCCGAACCCAAACCCCCAACCGTTACCACAGCCAAACCC
AAATCCCCAGCCTTTACCTCAGCCAGACCCGAACGCTCCGCCGTTGCCTCTGCCGCAGCC
TAACCCAAACAACCCGCAACCTCTGCCGCAGCCAGACCCTAACGCGCCATCACTACCTCT
GCCGCAGCCAGACCCAAACGCGCCACCACTGCCTCTGCCACAACCTGATCCGAACGCGCC
ACCACAACCTT

consensusID : consensus_14224#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 81
fasta sequence

                              [CAAGGCAGCAACTAGCTTAGCTAGCTAGCTACTGGTGATGCAGGCACGAGCTAGCCGGCNATGGNAGGCGTCGCATGGCTT]

[+] EMBL OS38073              [CAAGGCAGCAACTAGCTTAGCTAGCTAGCTACTGGTGATGCAGGCACGAGCTAGCCGGCNATGGNAGGCGTCGCATGGCTT]




>consensus_14224#2
CAAGGCAGCAACTAGCTTAGCTAGCTAGCTACTGGTGATGCAGGCACGAGCTAGCCGGCN
ATGGNAGGCGTCGCATGGCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14224#0      CAAATTAAAATTAAACCCACAATCGAAGTAAAAAGATTTCTCATACGTAAGCAGAGACCA 60
consensus_14224#1      ------------------------------------------------------------
consensus_14224#2      ------------------------------------------------------------
                                                                                   

consensus_14224#0      CACACACACACACTTTATGCTTGGCTGCAAGGCGTTGAAGCAGAGCGGCCGTGCTGTTAT 120
consensus_14224#1      ------------------------------------------------------------
consensus_14224#2      ------------------------------------------------------------
                                                                                   

consensus_14224#0      GTTTAGCTCTCCTTAGTATAGCAGCAATAAACAGGAGATTACGACCTGCGATCCAGATTA 180
consensus_14224#1      ------------------------------------------------------------
consensus_14224#2      ------------------------------------------------------------
                                                                                   

consensus_14224#0      CAATTACTAACTTGTGTCCTAATTAATCAACCCGATGGACATCCAACCGAACAGACACGA 240
consensus_14224#1      ------------------------------------------------------------
consensus_14224#2      ------------------------------------------------------------
                                                                                   

consensus_14224#0      GGGTTATCTTCCTTTTCTCTTCTTCTTCTTCTTCTTTTGCGTGGGGAGCGATTAACACGC 300
consensus_14224#1      ------------------------------------------------------------
consensus_14224#2      ------------------------------------------------------------
                                                                                   

consensus_14224#0      GTGCGTCGCTGATTGGCTCGCCATGGCTATAAATCTCGAGGTCGGTTGCCCCTTGCTGTC 360
consensus_14224#1      ----------------------------------CACTGACATGGCTGAAGGA-GTAGAA 25
consensus_14224#2      ------------------------------------------------------------
                                                                                   

consensus_14224#0      CACTGCCTGAGAAGCCGAGACCACTACAAGCAGCAACTAGCTTAGCTAGCTAGCTACTGG 420
consensus_14224#1      AACTGTCTGAGAAGCCGAGACCACTACAAGCAGCAACTAGCTTAGCTAGCTAGCTACTGG 85
consensus_14224#2      -------------------------CAAGGCAGCAACTAGCTTAGCTAGCTAGCTACTGG 35
                                                  * *******************************

consensus_14224#0      TGAT-CAGGCACGAGCTAGCCGGCCATGGCGAGGCGTCGCCATGCTTGCTTTCTTCTCCT 479
consensus_14224#1      TGAT-CAGGCACGAGCTAGCCGGCCATGGCGAGGCGTCGCCATGCTTGCTTTCTTCTCCT 144
consensus_14224#2      TGATGCAGGCACGAGCTAGCCGGCNATGGN-AGGCGTCGCATGGCTT------------- 81
                       **** ******************* ****  *********   ****             

consensus_14224#0      GCTGCCTCTGCTGGTGCTGCAGCTTCTTCTTGCTGGGGGAAGCTTGGTTGATGATCTTCC 539
consensus_14224#1      GCTGCCTCTGCTGGTGCTGCAGCTTCTTCTTGCTGGGGGAATCTTGGTTGATGATCTTCC 204
consensus_14224#2      ------------------------------------------------------------
                                                                                   

consensus_14224#0      TGCTGCAACTCATCAGGTGCCGAGGTTAGTAGGGCCACAGCGCAAGTTACAGCAGCTTCC 599
consensus_14224#1      TGCTGCAACTCATCAGGTGCCGAGGTTAGTAGGGCCACAGCGCAAGTTACAGCAGCTTCC 264
consensus_14224#2      ------------------------------------------------------------
                                                                                   

consensus_14224#0      AAACCCAAGGCCACAGCCGCAACCATTGCCCCAGCCAAACCCAAATCCACAGCCACAACC 659
consensus_14224#1      AAACCCAAGGCCACAGCCGCAACCATTGCCCCAGCCAAACCCAAATCCACAGCCACAACC 324
consensus_14224#2      ------------------------------------------------------------
                                                                                   

consensus_14224#0      ACTCCCACAGCCACAGCCACAGCCACAACCACAACCACAACCTCTGCCACAACCGCAGCC 719
consensus_14224#1      ACTCCCACAGCCACAGCCACAGCCACAACCACAACCACAACCTCTGCCACAACCGCAGCC 384
consensus_14224#2      ------------------------------------------------------------
                                                                                   

consensus_14224#0      GCAACCACAGCCTTTACCGCTACCAGGCCCACAACCATTACCGCAACCCGGCCCGCAGCC 779
consensus_14224#1      GCAACCACAGCCTTTACCGCTACCAGGCCCACAACCATTACCGCAACCCGGCCCGCAGCC 444
consensus_14224#2      ------------------------------------------------------------
                                                                                   

consensus_14224#0      GAACCCAAACCCCCAACCGTTACCACAGCCAAACCCAAATCCCCAGCCTTTACCTCAGCC 839
consensus_14224#1      GAACCCAAACCCCCAACCGTTACCACAGCCAAACCCAAATCCCCAGCCTTTACCTCAGCC 504
consensus_14224#2      ------------------------------------------------------------
                                                                                   

consensus_14224#0      AGACCCGAACGCTCCGCCGTTGCCTCTGCCGCAGCCTAACCCAAACAACCCGCAACCTCT 899
consensus_14224#1      AGACCCGAACGCTCCGCCGTTGCCTCTGCCGCAGCCTAACCCAAACAACCCGCAACCTCT 564
consensus_14224#2      ------------------------------------------------------------
                                                                                   

consensus_14224#0      GCCGCAGCCAGACCCTAACGCGCCATCACTACCTCTGCCGCAGCCAGACCCAAACGCGCC 959
consensus_14224#1      GCCGCAGCCAGACCCTAACGCGCCATCACTACCTCTGCCGCAGCCAGACCCAAACGCGCC 624
consensus_14224#2      ------------------------------------------------------------
                                                                                   

consensus_14224#0      ACCACTGCCTCTGCCACAACCTGATCCGAACGCGCCACCACAACCTTTGCCGCAACCAGA 1019
consensus_14224#1      ACCACTGCCTCTGCCACAACCTGATCCGAACGCGCCACCACAACCTT------------- 671
consensus_14224#2      ------------------------------------------------------------
                                                                                   

consensus_14224#0      CCCAAACAACCCTCAACCTTTACCGCAACCTGACCCTAACGCACCACCACAGCCTTTGCC 1079
consensus_14224#1      ------------------------------------------------------------
consensus_14224#2      ------------------------------------------------------------
                                                                                   

consensus_14224#0      GCAACCAGACCCTAACTCGCCGCCACAGCCTTTGCCGCAACCAGACCCGAACACGCCTCC 1139
consensus_14224#1      ------------------------------------------------------------
consensus_14224#2      ------------------------------------------------------------
                                                                                   

consensus_14224#0      TGGCCAACAAATTAATGCAAAGATATCATCACAGCCGGATTCTATTGGTGGAGCCAGAAC 1199
consensus_14224#1      ------------------------------------------------------------
consensus_14224#2      ------------------------------------------------------------
                                                                                   

consensus_14224#0      TTTATATCCATACGGTGTAATATACAATCTCATGCCATTGTTTAGCCTATTCTTCTATAT 1259
consensus_14224#1      ------------------------------------------------------------
consensus_14224#2      ------------------------------------------------------------
                                                                                   

consensus_14224#0      GTTTTGATAGTAAGGAGAGGCTTATTGTTGTAAATAAGCGTGCTGAGTTACCATTTTTAG 1319
consensus_14224#1      ------------------------------------------------------------
consensus_14224#2      ------------------------------------------------------------
                                                                                   

consensus_14224#0      ATTGCATGTATATACACATTGCCATGTTGATAGGTTTGCTATGTTATCTTTTTTTTTTGT 1379
consensus_14224#1      ------------------------------------------------------------
consensus_14224#2      ------------------------------------------------------------
                                                                                   

consensus_14224#0      TTGAGATGGAGGTTTGCTATGTACTGCACTGGCTTGTACCCTGATATTTTTGTGTATGTT 1439
consensus_14224#1      ------------------------------------------------------------
consensus_14224#2      ------------------------------------------------------------
                                                                                   

consensus_14224#0      AATACACACCTATTTACCTCTTTGTGTAAAAAAAAAAAAAAAAAA 1484
consensus_14224#1      ---------------------------------------------
consensus_14224#2      ---------------------------------------------