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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14228#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 850 fasta sequence
[TTTTTTTTTTTTTTCTCCTAGTCACCTATAGAGAACGGCCCATAGGTGATAACTCATTTAAAACCGACACCTATTAATCTTTTCTCACCTCCACAAGATGGAAAAAAAATATAAATCGACATATTGGACTCTCGAGGAGTGATCCTCTCTAGCGGGAGATTGTGAGATCCCCCTTTGTGAGTTCGGCCGGGGGCAGCGGATGAAATCCGAGTTTTTCGAGACAAAGGAGACACAAGGGATTTATACAAATTCGGGCTGCTAAGAAGCGTAATACCCTACTCCTGTGCTATGCTCCTTGAGTGAAGGATTACAAGATCTCCTTGTTGGAGTAAAATGTGGTGTTGATCATCCGGGGCTAGAGACTGCTCTAGAGCGTCAAATGGATCATCCCAGATCCCTCCCCCCTTTTACTAGGTCTGGACCTCCTTTTATACCTCAAGGGGTTACCACATGGGCAC-AAAAACCTAGCTCCGGTGG-AGAAGTGTTTTGCATTAAATGCCTGTCTTGTCTCTTGACTTGGGAAGCAAGCGCGCGTCATCTTGATGATGGGGCCTGTCAAATCTTGCCGCCTGACACGAGGGGCGCCAATGTCAGCTGCTTTTAATGGGTGAAGACTTCTGGGCTCCTATTTGTCGACCCACGATTTTGGAAATCGGAAATCTTCTGTGTTTATGAGTACCAATCCCACAAGCAGTCGACTAGGGAACGAGACCTAGAATGGAACCGCACTCCGATCATCTTGTTAGGTACGCAAGCGTACAAACAAGGGCTTCTCTTCAACACTCGAGAGGTGGCAAAACGGCGATGTTCGATGCCGTGGTGGGGAGACGGTAGTGAAGCAGAGGTGGAC]
[+] EMBL CF320150 [TTTTTTTTTTTTTTCTCCTAGTCACCTATAGAGAACGGCCCATAGGTGATAACTCATTTAAAACCGACACCTATTAATCTTTTCTCACCTCCACAAGATGGAAAAAAAATATAAATCGACATATTGGACTCTCGAGGAGTGATCCTCTCTAGCGGGAGATTGTGAGATCCCCCTTTGTGAGTTCGGCCGGGGGCAGCGGATGAAATCCGAGTTTTTCGAGACAAAGGAGACACAAGGGATTTATACAAATTCGGGCTGCTAAGAAGCGTAATACCCTACTCCTGTGCTATGCTCCTTGAGTGAAGGATTACAAGATCTCCTTGTTGGAGTAAAATGTGGTGTTGATCATCCGGGGCTAGAGACTGCTCTAGAGCGTCAAATGGATCATCCCAGATCCCTCCCCCCTTTTACTAGGTCTGGACCTCCTTTTATACCTCAAGGGGTTACCACATGGGCAC AAAAACCTAGCTCCGGTGGAAGAAGTGTTTTGCATTAAATGCCTGTCTTGTCTCTTGACTTGGGAAGCAAGCGCGCGTCATCTTGATGATGGGGCCTGTCAAATCT ]
[-] EMBL AK063632 [ GGAGTGATCCTCTCTAGCGGGAGATTGTGAGATCCCCCTTTGTGAGTTCGGCCGGGGGCAGCGGATGAGATCCGAGTTTTTCGAGACAAAAGAGACACAAGGGATTTATACAAATTCGGGCTGCTAAGAAGCGTAATACCCTACTCCTGTGCTATGCTCCTTGAGTGAAGGATTACAAGATCTCCTTGTTGGAGTAAAATGTGGTGTTGATCATCCGGGGCTAGAGACTGCTCTAGAGCGTCAAATGGATCATCCCAGATCCCTCCCCCCTTTTACTAGGTCTGGACCTCCTTTTATACCTCAAGGGGTTACCACATGGGCAC AAAAACCTAGCTCCGGTGG AGAAGTGTTTTGCATTAAATGCCTGTCTTGTCTCTTGACTTGGGAAGCAAGCGCGCGTCATCTTGATGATGGGGCCTGTCAAATCTTGCCGCCTGACACGAGGGGCGCCAATGTCAGCTGCTTTTAATGGGTGAAGACTTCTGGGCTCCTATTTGTCGACCCACGATTTTGGAAATCGGAAATCTTCTGTGTTTATGAGTACCAATCCCACAAGCAGTCGACTAGGGAACGAGACCTAGAATGGAACCGCACTCCGATCATCTTGTTAGGTACGCAAGCGTACAAACAAGGGCTTCTCTTCAACACTCGAGAGGTGGCAAAACGGCGATGTTCGATGCCGTGGTGGGGAGACGGTAGTG ]
[+] EMBL CF326662 [ TTCGGGCTGCTAAGAAGCGTAATACCCTACTCCTGTGCTATGCTCCTTGAGTGAAGGATTACAAGATCTCCTTGTTGGAGTAAAATGTGGTGTTGATCATCCGGGGCTAGAGACTGCTCTAGAGCGTCAAATGGATCATTCCAGATCCCTCCCCCCTTTTACTAGGTCTGGACCTCCTTTTATACCTCAAGGGGTTACCACATGGGCAC AAAAACCTAGCTCCGGTGG AGAAGTGTTTTGCATTAAATGCCTGTCTTGTCTCTTGACTTGGGAAGCAAGCGCGCGTCATCTTGATGATGGGGCCTGTCAAATCTTGCCGCCTGACACGAGGGGCGCCAATGTCAGCTGCTTTTAATGGGTGAAGACTTCTGGGCTCCTATTTGTCGACCCACGATTTTGGAAATCGGAAATCTTCTGTGTTTATGAGTACCAATCCCACAAGCAGTCGACTAGGGAACGAGACCTAGAATGGAACCGCACTCCGATCATCTTGTTAGGTACGCAAGCGTACAAACAAGGGCTTCTCTTCAACACTCGAGAGGTGGCAAAACGGCGATGTTCGATGCCGTGGTGGGGAGACGGTAGTGAAGCAGAGGTGGAC]
[-] EMBL CF309493 [ CCACATGGGCAC AAAAACCTAGCTCCGGTGG AGAAGTGTTTTGCATTAAATGCCTGTCTTGTCTCTTGACTTGGGAAGCAAGCGCGCGTCATCTTGATGATGGGGCCTGTCAAATCTTGCCGCCTGACACGAGGGGCGCCAATGTCAGCTGCTTTTAATGGGTGAAGACTTCTGGGCTCCTATTTGTCGACCCACGATTTTGGAAATCGGAAATCTTCTGTGTTTATGAGTACCAATCCCACAAGCAGTCGACTAGGGAACGAGACCTAGAATGGAACCGCACTCCGATCATCTTGTTAGGTACGCAAGCGTACAAACAAGGGCTTCTCTTCAACACTCGAGAGGTGGCAAAACGGCGATGTTCGATGCCGTGGTGGGGAGACGGTAGTG ]
[-] EMBL CF320149 [ GGGCACAAAAAACCTAGCTCCGGTGG AGAAGTGTTTTGCATTAAATGCCTGTCTTGTCTCTTGACTTGGGAAGCAAGCGCGCGTCATCTTGATGATGGGGCCTGTCAAATCTTGCCGCCTGACACGAGGGGCGCCAATGTCAGCTGCTTTTAATGGGTGAAGACTTCTGGGCTCCTATTTGTCGACCCACGATTTTGGAAATCGGAAATCTTCTGTGTTTATGAGTACCAATCCCACAAGCAGTCGACTAGGGAACGAGACCTAGAATGGAACCGCACTCCGATCATCTTGTTAGGTACGCAAGCGTACAAACAAGGGCTTCTCTTCAACACTCGAGAGGTGGCAAAACGGCGATGTTCGATGCCGTGGTGGGGAGACGGTAGTG ]
consensusID : consensus_14228#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 826 fasta sequence
[TTTTTTTTTTTTTTTTATCACAGTTAATTACTAACTCAAATTTTATCGATTTCCTTTCGGAATTAATTACCAAGAACAGAATCCTGTACATGACAAACAATTGGCTCTCTCCTCTAGTCCTACCACATCTCTTGCTCCCAAGTCCCAATTTGTCCTCTTCCTGAATCAGACAAGTTTATGTAATTGTGTTCAGTAATTATGCATACTCCACAGTAAAGATCCTTGCCTTGAGGCTTCAGCAGCAGCTGGCTTACAGAAACAACACAGATCCCAAGAGAAAATCAGTACCTCAAAAATTCAGAGAAGAAGCAAGAGAATAAGACTTCATCACTTGGGTAGCCTTTAAAAGACTGCTTCCAGCCTCTTTCGGAAGCAATGCAGGTAAATTCAGCTTATATAGTTGCCAAATAATATGATTGGGATGTATGGCAATGAATCCTTCATGAAGAGGCTTATGGAAACCGAAATAAATGCAACAACAGATGGAATCAACTGAGTAAACAAAAAATTGAGAAGTCAGTCATCCCTTGAGGAAAAAAATTGAATATCAAATTGGATTAATCAAATAATGGATCTGAAAAACTTCGGT-AAAAAAAAAAAGATGTGAACAAACCTTTGCTTTAATATTCAGCAGGAAAAGAGTAATCTCTTGATCACGTAAAAAATTGCTTGATGCCCACCAGAAATCCCGAAAGAACTCTATAGAACCCCGAAAGAACTCTATAGATCCCAGAAAGAGGCGTGCATCGTAGCGAGCACGAGGTCAAGCTCGAGGCGGCGAAGGTGGTCTGAATCTGATGCACTGCGCACTCCAACTCGTCAAGGG]
[+] EMBL CB644483 [TTTTTTTTTTTTTTTTATCACAGTTAAATACTAACTCAAATTTTATCGATTTCCTTTCGGAATTAATTACCAAGAACAGAATCCTGTACATGACAAACAATTGGCTCTCTCCTCTAGTCCTACCACATCTCTTGCTCCCAAGTCCCAATTTGTCCTCTTCCTGAATCAGACAAGTTTATGTAATTGTGTTCAGTAATTATGCATACTCCACAGTAAAGATCCTTGCCTTGAGGCTTCAGCAGCAGCTGGCTTACAGAAACAACACAGATCCCAAGAGAAAATCAGTACCTCAAAAATTCAGAGAAGAAGCAAGAGAATAAGACTTCATCACTTGGGTAGCCTTTAAAAGACTGCTTCCAGCCTCTTTCGGAAGCAATGCAGGTAAATTCAGCTTATATAGTTGCCAAATAATATGATTGGGATGTATGGCAATGAATCCTTCATGAAGAGGCTTATGGAAACCGAAATAAATGCAACAACAGATGGAATCAACTGAGTAAACAAAAAATTGAGAAGTCAGTCATCCCTTGAGGAAAAAAATTGAATATCAAATTGGATTAATCAAATAATGGATCTGAAAAACTTCGGT AAAAAAAAAAAGATGTGAACAAACCTTTGCTTTAATATTCAGCAGGAAAAGAGTAATCTCTTGATCACGTAAAAAATTGCTTGATGCCCACCAGAAATCCCGAAAGAACTCTATAGAACCCCGAAAGAACTCTATAGATCCCAGAAAGAGGCGTGCATCGTAGCGAGCACGAGGTCAAGCTCGAGGCGGCGAAGGTGGTCTGAATC ]
[-] EMBL AU166739 [ tttTTACTAACTCAAATTTTATCGATTTCCTTTCGGAATTAATTACCAAGAACAGAATCCTGTACATGACAAACAATTGGCTCTCTCCTCTAGTCCTACCACATCTCTTGCTCCCAAGTCCCAATTTGTCCTCTTCCTGAATCAGACAAGTTTATGTAATTGTGTTCAGTAATTATGCATACTCCACAGTAAAGATCCTTGCCTTGAGGCTTCAGCAGCAGCTGGCTTACAGAAACAACACAGATCCCAAGAGAAAATCAGTACCTCAAAAATTCAGAGAAGAAGCAAGAGAATAAGACTTCATCACTTGGGTAGCCTTTAAAAGACTGCTTCCAGCCTCTTTCGGAAGCAATGCAGGTAAATTCAGCTTATATAGTTGCCAAATAATATGATTGGGATGTATGGCAATGAATCCTTCATGAAGAGGCTTATGGAAACCGAAAT ]
[+] EMBL CF336515 [ ttttTAACTCAAATTTTATCGATTTCCTTTCGGAATTAATTACCAAGAACAGAATCCTGTACATGACAAACAATTGGCTCTCTCCTCTAGTCCTACCACATCTCTTGCTCCCAAGTCCCAATTTGTCCTCTTCCTGAATCAGACAAGTTTATGTAATTGTGTTCAGTAATTATGCATACTCCACAGTAAAGATCCTTGCCTTGAGGCTTCAGCAGCAGCTGGCTTACAGAAACAACACAGATCCCAAGAGAAAATCAGTACCTCAAAAATTCAGAGAAGAAGCAAGAGAATAAGACTTCATCACTTGGGTAGCCTTTAAAAGACTGCTTCCAGCCTCTTTCGGAAGCAATGCAGGTAAATTCAGCTTATATAGTTGCCAAATAATATGATTGGGATGTATGGCAATGAATCCTTCATGAAGAGGCTTATGGAAACCGAAATAAATGCAACAACAGATGGAATCAACTGAGTAAACAAAAAATTGAGAAGTCAGTCATCCCTTGAGGAAAAAAATTGAATATCAAATTGGATTAATCAAATAATGGATCTGAAAAACTTCGGT AAAAAAAAAAGATGTGAACAAACCTTTGCTTTAATATTCAGCAGGAAAAGAGTAATCTCTTGATCACGTAAAAAAT ]
[+] EMBL CB663353 [ CTCAAATTTTATCGATTTCCTTTCGGAATTAATTACCAAGAACAGAATCCTGTACATGACAAACAATTGGCTCTCTCCTCTAGTCCTACCACATCTCTTGCTCCCAAGTCCCAATTTGTCCTCTTCCTGAATCAGACAAGTTTATGTAATTGTGTTCAGTAATTATGCATACTCCACAGTAAAGATCCTTGCCTTGAGGCTTCAGCAGCAGCTGGCTTACAGAAACAACACAGATCCCAAGAGAAAATCAGTACCTCAAAAATTCAGAGAAGAAGCAAGAGAATAAGACTTCATCACTTGGGTAGCCTTTAAAAGACTGCTTCCAGCCTCTTTCGGAAGCAATGCAGGTAAATTCAGCTTATATAGTTGCCAAATAATATGATTGGGATGTATGGCAATGAATCCTTCATGAAGAGGCTTATGGAAACCGAAATAAATGCAACAACAGATGGAATCAACTGAGTAAACAAAAAATTGAGAAGTCAGTCATCCCTTGAGGAAAAAAATTGAATATCAAATTGGATTAATCAAATAATGGATCTGAAAAACTTCGGTAAAAAAAAAAAAGATGTGAACAAACCTTTGCTTTAATATTCAGCAGGAAAAGAGTAATCTCTTGATCACGTAAAAAATTGCTTGATGCCCACCAGAAATCCCGAAAGAACTCTATAGAACCCCGAAAGAACTCTATAGATCCCAGAAAGAGGCGTGCATCGTAGCGAGCACGAGGTCAAGCTCGAGGCGGCGAAGGTGGTCTGAATCTGATGCACTGCGCACTCCAACTCGTCAAGGG]
consensusID : consensus_14228#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 776 fasta sequence
[TTTTTTTTTGGGGTTAGGGGAGTTATTGATTGATGATGTGTACAGTAGGATCTCTCCTAGTCACCTATAGAGAACGGCCCATAGGTGATAACTCATTTAAAACCGACACCTATTAATCTTTTCTCACCTCCACAAGATGGAAAAAAAATATAAATCGACATATTGGACTCTCGAGGAGTGATCCTCTCTAGCGGGAGATTGTGAGATCCCCCTTTGTGAGTTCGGCCGGGGGCAGCGGATGAGATCCGAGTTTTTCGAGACAAAAGAGACACAAGGGATTTATACAAATTCGGGCTGCTAAGAAGCGTAATACCCTACTCCTGTGCTATGCTCCTTGAGTGAAGGATTACAAGATCTCCTTGTTGGAGTAAAATGTGGTGTTGATCATCCGGGGCTAGAGACTGCTCTAGAGCGTCAAATGGATCATCCCAGATCCCTCCCCCCTTTTACTAGGTCTGGACCTCCTTTTATAACTCAAGGGGTTACCACATGGGCACAAAAACCTAGCTCCGGTGGAGAAGTGTTTTGCATTAAATGCCTGTCTTGTCTCTTGACTTGGGAAGCAAGCGCGCGTCATCTTGATGATGGGGCCTGTCAAATCTTGCCGCCTGACACGAGGGGCGCCAATGTCAGCTGCTTTTAATGGGTGAAGACTTCTGGGCTCCTATTTGTCGACCCACGATTTTGGAAATCGGAAATCTTCTGTGTTTATGAGTACCAATCCCGAGAGGTGGCAAAACGGCGATGTTCGATGCCGTGGTGGGGAGACGGTAGTG]
[+] EMBL CF308376 [TTTTTTTTTGGGGTTAGGGGAGTTATTGATTGATGATGTGTACAGTAGGATCTCTCCTAGTCACCTATAGAGAACGGCCCATAGGTGATAACTCATTTAAAACCGACACCTATTAATCTTTTCTCACCTCCACAAGATGGAAAAAAAATATAAATCGACATATTGGACTCTCGAGGAGTGATCCTCTCTAGCGGGAGATTGTGAGATCCCCCTTTGTGAGTTCGGCCGGGGGCAGCGGATGAGATCCGAGTTTTTCGAGACAAAAGAGACACAAGGGATTTATACAAATTCGGGCTGCTAAGAAGCGTAATACCCTACTCCTGTGCTATGCTCCTTGAGTGAAGGATTACAAGATCTCCTTGTTGGAGTAAAATGTGGTGTTGATCATCCGGGGCTAGAGACTGCTCTAGAGCGTCAAATGGATCATCCCAGATCCCTCCCCCCTTTTACTAGGTCTGGACCTCCTTTTATAACTCAAGGGGTTACCACATGGGC ]
[-] EMBL CF308377 [ GTGTTGATCATCCGGGGCTAGAGACTGCTCTAGAGCGTCAAATGGATCATCCCAGATCCCTCCCCCCTTTTACTAGGTCTGGACCTCCTTTTATAACTCAAGGGGTTACCACATGGGCACAAAAACCTAGCTCCGGTGGAGAAGTGTTTTGCATTAAATGCCTGTCTTGTCTCTTGACTTGGGAAGCAAGCGCGCGTCATCTTGATGATGGGGCCTGTCAAATCTTGCCGCCTGACACGAGGGGCGCCAATGTCAGCTGCTTTTAATGGGTGAAGACTTCTGGGCTCCTATTTGTCGACCCACGATTTTGGAAATCGGAAATCTTCTGTGTTTATGAGTACCAATCCCGAGAGGTGGCAAAACGGCGATGTTCGATGCCGTGGTGGGGAGACGGTAGTG]
consensusID : consensus_14228#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 738 fasta sequence
[ATTTTATCGATTTCCTTTCGGAATTAATTACCAAGAACAGAATCCTGTACATGACAAACAATTGGCTCTCTCCTCTAGTCCTACCACATCTCTTGCTCCCAAGTCCCAATTTGTCCTCTTCCTGAATCAGACAAGTTTATGTAATTGTGTTCAGTAATTATGCATACTCCACAGTAAAGATCCTTGCCTTGAGGCTTCAGCAGCAGCTGGCTTACAGAAACAACACAGATCCCAAGAGAAAATCAGTACCTCAAAAATTCAGAGAAGAAGCAAGAGAATAAGACTTCATCACTTGGGTAGCCTTTAAAAGACTGCTTCCAGCCTCTTTCGGAAGCAATGCAGGTAAATTCAGCTTATATAGTTGCCAAATAATATGATTGGGATGTATGGCAATGAATCCTTCATGAAGAGGCTTATGGAAACCGAAATAAATGCAACAACAGATGGAATCAACTTTGCTTTAATATTCAGCAGGAAAAGAGTAATCTCTTGATCACGTAAAAAATTGCTTGATGCCCACCAGAAATCCCGAAAGAACTCTATAGAACCCCGAAAGAACTCTATAGATCCCAGAAAGAGGCGTGCATCACAAGCAGTCGACTAGGGAACGAGACCTAGAATGGAACCGCACTCCGATCATCTTGTTAGGTACGCAAGCGTACAAACAAGGGCTTCTCTTCAACACTCGAGAGGTGGCAAAACGGCGATGTTCGATGCCGTGGTGGGGAGACGGTAGTG]
[-] EMBL AK061278 [ATTTTATCGATTTCCTTTCGGAATTAATTACCAAGAACAGAATCCTGTACATGACAAACAATTGGCTCTCTCCTCTAGTCCTACCACATCTCTTGCTCCCAAGTCCCAATTTGTCCTCTTCCTGAATCAGACAAGTTTATGTAATTGTGTTCAGTAATTATGCATACTCCACAGTAAAGATCCTTGCCTTGAGGCTTCAGCAGCAGCTGGCTTACAGAAACAACACAGATCCCAAGAGAAAATCAGTACCTCAAAAATTCAGAGAAGAAGCAAGAGAATAAGACTTCATCACTTGGGTAGCCTTTAAAAGACTGCTTCCAGCCTCTTTCGGAAGCAATGCAGGTAAATTCAGCTTATATAGTTGCCAAATAATATGATTGGGATGTATGGCAATGAATCCTTCATGAAGAGGCTTATGGAAACCGAAATAAATGCAACAACAGATGGAATCAACTTTGCTTTAATATTCAGCAGGAAAAGAGTAATCTCTTGATCACGTAAAAAATTGCTTGATGCCCACCAGAAATCCCGAAAGAACTCTATAGAACCCCGAAAGAACTCTATAGATCCCAGAAAGAGGCGTGCATCACAAGCAGTCGACTAGGGAACGAGACCTAGAATGGAACCGCACTCCGATCATCTTGTTAGGTACGCAAGCGTACAAACAAGGGCTTCTCTTCAACACTCGAGAGGTGGCAAAACGGCGATGTTCGATGCCGTGGTGGGGAGACGGTAGTG]
consensusID : consensus_14228#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 506 fasta sequence
[TTTTTTACTAACTCAAATTTTATCGATTTCCTTTCGGAATTAATTACCAAGAACAGAATCCTGTACATGACAAACAATTGGCTCTCTCCTCTAGTCCTACCACATCTCTTGCTCCCAAGTCCCAATTTGTCCTCTTCCTCAAAAATTCAGAGAAGAAGCAAGAGAATAAGACTTCATCACTTGGGTAGCCTTTAAAAGACTGCTTCCAGCCTCTTTCGGAAGCAATGCAGGTAAATTCAGCTTATATAGTTGCCAAATAATATGATTGGGATGTATGGCAATGAATCCTTCATGAAGAGGCTTATGGAAACCGAAATAAATGCAACAACAGATGGAATCAACTTTGCTTTAATATTCAGCAGGAAAAGAGTAATCTCTTGATCACGTAAAAAATTGCTTGATGCCCACCAGAAATCCCGAAAGAACTCTATAGAACCCCGAAAGAACTCTATAGATCCCAGAAAGAGGCGTGCATCGAGAGGTGGCAAAACGGCGATGTTCGATGC]
[+] EMBL CF326220 [TTTTTTACTAACTCAAATTTTATCGATTTCCTTTCGGAATTAATTACCAAGAACAGAATCCTGTACATGACAAACAATTGGCTCTCTCCTCTAGTCCTACCACATCTCTTGCTCCCAAGTCCCAATTTGTCCTCTTCCTCAAAAATTCAGAGAAGAAGCAAGAGAATAAGACTTCATCACTTGGGTAGCCTTTAAAAGACTGCTTCCAGCCTCTTTCGGAAGCAATGCAGGTAAATTCAGCTTATATAGTTGCCAAATAATATGATTGGGATGTATGGCAATGAATCCTTCATGAAGAGGCTTATGGAAACCGAAATAAATGCAACAACAGATGGAATCAACTTTGCTTTAATATTCAGCAGGAAAAGAGTAATCTCTTGATCACGTAAAAAATTGCTTGATGCCCACCAGAAATCCCGAAAGAACTCTATAGAACCCCGAAAGAACTCTATAGATCCCAGAAAGAGGCGTGCATCGAGAGGTGGCAAAACGGCGATGTTCGATGC]
consensusID : consensus_14228#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 456 fasta sequence
[ACTCCCATTTTGCCTTCTGATATGATCAGTAACCTATATGATGAAACATGGGTTATGAGGTTATCTAGCTTGTTCAGAATGAATCAAATAACTTCTGTGATTTTTTTCAATATAGGATCTTCACGAAGAAATTGCTTTTGTATCTTGCTCTTCATGAATGAATTACTTTTATGACTTGTTCTTCATGAATGAATCTTGACAATGAAAAAATATTTGATTCTGCAGATGCACGCCTCTTTCTGGGATCTATAGAGTNTCTTTCGGGGTTCTATAGAGTTCTTTCGGGATTTCTGGTGGGCATCAAGCAATTTTTTACGTGATCAAGAGATTACTCTTTTCCTGCTGAATATTAAAGCAAAGGGTTTGTTCACATCTTTTTTTTTTTACCGAAGTTTTTCAGATCCATTATTTGATTAATCCAATTTGATATTCAATTTTTTTCCTCAAGGGATGACT]
[+] EMBL CF308444 [ACTCCCATTTTGCCTTCTGATATGATCAGTAACCTATATGATGAAACATGGGTTATGAGGTTATCTAGCTTGTTCAGAATGAATCAAATAACTTCTGTGATTTTTTTCAATATAGGATCTTCACGAAGAAATTGCTTTTGTATCTTGCTCTTCATGAATGAATTACTTTTATGACTTGTTCTTCATGAATGAATCTTGACAATGAAAAAATATTTGATTCTGCAGATGCACGCCTCTTTCTGGGATCTATAGAGTNTCTTTCGGGGTTCTATAGAGTTCTTTCGGGATTTCTGGTGGGCATCAAGCAATTTTTTACGTGATCAAGAGATTACTCTTTTCCTGCTGAATATTAAAGCAAAGGGTTTGTTCACATCTTTTTTTTTTTACCGAAGTTTTTCAGATCCATTATTTGATTAATCCAATTTGATATTCAATTTTTTTCCTCAAGGGATGACT]
consensusID : consensus_14228#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 278 fasta sequence
[CACTACCGTCTCCCCACCACGGCATCGAACATCGCCGTTTTGCCACCTCTCGATGCACGCCTCTTTCTGGGATCTATAGAGTNTCTTTCGGGGTTCTATAGAGTTCTTTCGGGATTTCTGGTGGGCATCAAGCAATTTTTTACGTGATCAAGAGATTACTCTTTTCCTGCTGAATATTAAAGCAAAGGGTTTGTTCACATCTTTTTTTTTACCCGAAGTTTTTCAGATCCATTATTTGATTAATCCAATTTGATATTCAATTTTTTTCCTCAAGGGAT]
[+] EMBL CF336514 [CACTACCGTCTCCCCACCACGGCATCGAACATCGCCGTTTTGCCACCTCTCGATGCACGCCTCTTTCTGGGATCTATAGAGTNTCTTTCGGGGTTCTATAGAGTTCTTTCGGGATTTCTGGTGGGCATCAAGCAATTTTTTACGTGATCAAGAGATTACTCTTTTCCTGCTGAATATTAAAGCAAAGGGTTTGTTCACATCTTTTTTTTTACCCGAAGTTTTTCAGATCCATTATTTGATTAATCCAATTTGATATTCAATTTTTTTCCTCAAGGGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14228#1 TTTTTTTTTTTTTTTTATCACAGTTAATTACTAACTCAAATTTTATCGATTTCCTTTCGG 60
consensus_14228#4 -----------------------TTTTTTACTAACTCAAATTTTATCGATTTCCTTTCGG 37
consensus_14228#3 ---------------------------------------ATTTTATCGATTTCCTTTCGG 21
consensus_14228#5 ----------------------------------------ACTCCCATTTTGCCTTCTGA 20
consensus_14228#6 ------------------------------------------------------------
consensus_14228#0 -----------------------------------------TTTTTTTTTTTTTTCTCCT 19
consensus_14228#2 --TTTTTTTTTGGGGTTAGGGGAGTTATTGATTGATGATGTGTACAGTAGGATCTCTCCT 58
consensus_14228#1 AATTAATTACCAAGAACAGAATCCTGTACATGACAAACAATTGGCTCTCTCCTCTAGTCC 120
consensus_14228#4 AATTAATTACCAAGAACAGAATCCTGTACATGACAAACAATTGGCTCTCTCCTCTAGTCC 97
consensus_14228#3 AATTAATTACCAAGAACAGAATCCTGTACATGACAAACAATTGGCTCTCTCCTCTAGTCC 81
consensus_14228#5 TATGATCAGTAACCTATATGATGAAACATGGGTTATGAGGTTATCTAGCTTGTTCAGAAT 80
consensus_14228#6 ------------------------------------------------------------
consensus_14228#0 AGTCACCTATAGAGAACGG---CCCATAGGTGATAACTCATTTAAAACCGACACCTATTA 76
consensus_14228#2 AGTCACCTATAGAGAACGG---CCCATAGGTGATAACTCATTTAAAACCGACACCTATTA 115
consensus_14228#1 TACCACATCTCTTGCTCCCAAGTCCCAATTTGTCCTCTTCCTGAATCAGACAAGTTTATG 180
consensus_14228#4 TACCACATCTCTTGCTCCCAAGTCCCAATTTGTCCTCTTCCT------------------ 139
consensus_14228#3 TACCACATCTCTTGCTCCCAAGTCCCAATTTGTCCTCTTCCTGAATCAGACAAGTTTATG 141
consensus_14228#5 GAATCAAATAACTTCTGTGATTTTTTTCAATATAGGATCTTCACGAAGAAATTGCTTTTG 140
consensus_14228#6 ------------------------------------------------------------
consensus_14228#0 ATCTTTTCTCACCTCCACAAGATGGAAAAAAAATATAAATCGACATATTGGACTCTCGAG 136
consensus_14228#2 ATCTTTTCTCACCTCCACAAGATGGAAAAAAAATATAAATCGACATATTGGACTCTCGAG 175
consensus_14228#1 TAATTGTGTTCAGTAATTATGCATACTCCACAGTAAAGATCCTTGCCTTGAGGCTTCAGC 240
consensus_14228#4 ------------------------------------------------------------
consensus_14228#3 TAATTGTGTTCAGTAATTATGCATACTCCACAGTAAAGATCCTTGCCTTGAGGCTTCAGC 201
consensus_14228#5 TATC-----TTGCTCTTCATGAATGAATTACTTTTATGACTTGTTCTTCA------TGAA 189
consensus_14228#6 ----------------------------------CACTACCGTCTCCCCA------CCAC 20
consensus_14228#0 GAGTGATCCTCTCTAGCGGGAGATTGT-----GAGATCCCCCTTTGTGAGTTCGGCCGGG 191
consensus_14228#2 GAGTGATCCTCTCTAGCGGGAGATTGT-----GAGATCCCCCTTTGTGAGTTCGGCCGGG 230
consensus_14228#1 AGCAGCTGGCTTACAGAAACAACACAGATCCCAAGAGAAAATCAGTACCTCAAAAATTCA 300
consensus_14228#4 --------------------------------------------------CAAAAATTCA 149
consensus_14228#3 AGCAGCTGGCTTACAGAAACAACACAGATCCCAAGAGAAAATCAGTACCTCAAAAATTCA 261
consensus_14228#5 TGAATCTTGACAATGAAAAAATATTTGATTCTGCAGATGCACGCCTCTTTCTGGGATCTA 249
consensus_14228#6 GGCATC----GAACATCGCCGTTTTGCCACCTCTCGATGCACGCCTCTTTCTGGGATCTA 76
consensus_14228#0 GGCAGCGGATGAAATCCGAGTTTTTCGAGACAAAGGAGACACAAGGGATTTATACAAATT 251
consensus_14228#2 GGCAGCGGATGAGATCCGAGTTTTTCGAGACAAAAGAGACACAAGGGATTTATACAAATT 290
*
consensus_14228#1 GAGAAGAAGCAAGAGAATAAGACTTCATCACTTGG--GTAGCCTTTAAAAGACTGCTTCC 358
consensus_14228#4 GAGAAGAAGCAAGAGAATAAGACTTCATCACTTGG--GTAGCCTTTAAAAGACTGCTTCC 207
consensus_14228#3 GAGAAGAAGCAAGAGAATAAGACTTCATCACTTGG--GTAGCCTTTAAAAGACTGCTTCC 319
consensus_14228#5 TAGAGTNTCTTTCGGGGTTCTATAGAGTTCTTTCG--G-GATTTCTGGTGGGCATCAAGC 306
consensus_14228#6 TAGAGTNTCTTTCGGGGTTCTATAGAGTTCTTTCG--G-GATTTCTGGTGGGCATCAAGC 133
consensus_14228#0 CGGGCTGCTAAGAAGCGTAATACCCTACTCCTGTGCTATGCTCCTTGAGTGAAGGATTAC 311
consensus_14228#2 CGGGCTGCTAAGAAGCGTAATACCCTACTCCTGTGCTATGCTCCTTGAGTGAAGGATTAC 350
* * * * * * * * *
consensus_14228#1 AG---CCTCTTTCGGAAGCAATGCAGGTAAATTCAGCTTATATAGTTGCCAAATAATATG 415
consensus_14228#4 AG---CCTCTTTCGGAAGCAATGCAGGTAAATTCAGCTTATATAGTTGCCAAATAATATG 264
consensus_14228#3 AG---CCTCTTTCGGAAGCAATGCAGGTAAATTCAGCTTATATAGTTGCCAAATAATATG 376
consensus_14228#5 AA---TTTTTTACGTGATCAAG------AGATTACTCTTTTCCTGCTGAATATTAAAGCA 357
consensus_14228#6 AA---TTTTTTACGTGATCAAG------AGATTACTCTTTTCCTGCTGAATATTAAAGCA 184
consensus_14228#0 AAGATCTCCTTGTTGGAGTAAAATGTG-GTGTTGATCATCCGGGGCTAGAGACTGCTCTA 370
consensus_14228#2 AAGATCTCCTTGTTGGAGTAAAATGTG-GTGTTGATCATCCGGGGCTAGAGACTGCTCTA 409
* ** * ** ** * * * * * *
consensus_14228#1 ATTGGG---ATGTATGGCAATGAATCCTTCATGAAGAGGCTTATGGAAACCGA-----AA 467
consensus_14228#4 ATTGGG---ATGTATGGCAATGAATCCTTCATGAAGAGGCTTATGGAAACCGA-----AA 316
consensus_14228#3 ATTGGG---ATGTATGGCAATGAATCCTTCATGAAGAGGCTTATGGAAACCGA-----AA 428
consensus_14228#5 AAGGGT---TTGT-TCACATCTTTTTTTTTTTACCGAAGTTTTTCAGATCCATTATTTGA 413
consensus_14228#6 AAGGGT---TTGT-TCACATCTTTTTTTTTAC-CCGAAGTTTTTCAGATCCATTATTTGA 239
consensus_14228#0 GAGCGTCAAATGGATCATCCCAGATCCCTCCCCCCT---TTTACTAGGTCTGG-----AC 422
consensus_14228#2 GAGCGTCAAATGGATCATCCCAGATCCCTCCCCCCT---TTTACTAGGTCTGG-----AC 461
* ** * * * ** *
consensus_14228#1 TAAATGCAACAACAGATGGAATCAACTGAGTAAACAAAAAATTGAGAAGTCAGTCATCCC 527
consensus_14228#4 TAAATGCAACAACAGATGGAATCAACT--------------------------------- 343
consensus_14228#3 TAAATGCAACAACAGATGGAATCAACT--------------------------------- 455
consensus_14228#5 TTAATCCAATTTGATATTCAATTTTTTTCCTCAAGGGATGACT----------------- 456
consensus_14228#6 TTAATCCAATTTGATATTCAATTTTTTTCCTCAAGGGAT--------------------- 278
consensus_14228#0 CTCCTTTTATACCTCAAGGGGTTACCACATGGGCACAAAAACCTAGCTCCGGTGGAGAAG 482
consensus_14228#2 CTCCTTTTATAACTCAAGGGGTTACCACATGGGCACAAAAACCTAGCTCCGGTGGAGAAG 521
* * * *
consensus_14228#1 TTGAGGAAAAAAATTGAATATCAAATTGGATTAATCAAATAATGGATCTGAAAAACTTCG 587
consensus_14228#4 ------------------------------------------------------------
consensus_14228#3 ------------------------------------------------------------
consensus_14228#5 ------------------------------------------------------------
consensus_14228#6 ------------------------------------------------------------
consensus_14228#0 TGTTTTGCATTAAATGCCTGTCTTGTCTCTTGACTTGGGAAGCAAGCGCGCGTCATCTTG 542
consensus_14228#2 TGTTTTGCATTAAATGCCTGTCTTGTCTCTTGACTTGGGAAGCAAGCGCGCGTCATCTTG 581
consensus_14228#1 GTAAAAAAAAAAAGATGTGAACAAACCTTTGCTTTAATATTCAGCAGGAAAAGAGTAATC 647
consensus_14228#4 ----------------------------TTGCTTTAATATTCAGCAGGAAAAGAGTAATC 375
consensus_14228#3 ----------------------------TTGCTTTAATATTCAGCAGGAAAAGAGTAATC 487
consensus_14228#5 ------------------------------------------------------------
consensus_14228#6 ------------------------------------------------------------
consensus_14228#0 ATGATGG------GGCCTGTCAAATCTTGCCGCCTGACACGAGGGGCGCCAATGTCAGCT 596
consensus_14228#2 ATGATGG------GGCCTGTCAAATCTTGCCGCCTGACACGAGGGGCGCCAATGTCAGCT 635
consensus_14228#1 TCTTGATCACGTAAAAAATTGCTTGATGCCCACCAGAAATCCCGAAAGAACTCTATAGAA 707
consensus_14228#4 TCTTGATCACGTAAAAAATTGCTTGATGCCCACCAGAAATCCCGAAAGAACTCTATAGAA 435
consensus_14228#3 TCTTGATCACGTAAAAAATTGCTTGATGCCCACCAGAAATCCCGAAAGAACTCTATAGAA 547
consensus_14228#5 ------------------------------------------------------------
consensus_14228#6 ------------------------------------------------------------
consensus_14228#0 GCTTTTAATGGGTGAAGACTTCTGGGCTCCTATTTGTCGACCCACGA------TTTTGGA 650
consensus_14228#2 GCTTTTAATGGGTGAAGACTTCTGGGCTCCTATTTGTCGACCCACGA------TTTTGGA 689
consensus_14228#1 CCCCGAAAGAACTCTATAGATCCCAGAAAGAGGCGTGCATCGTAGCG-AGCAC--GA-GG 763
consensus_14228#4 CCCCGAAAGAACTCTATAGATCCCAGAAAGAGGCGTGCATCGAGAGGTGGCAA--AACGG 493
consensus_14228#3 CCCCGAAAGAACTCTATAGATCCCAGAAAGAGGCGTGCATCACAAGCAGTCGACTAGGGA 607
consensus_14228#5 ------------------------------------------------------------
consensus_14228#6 ------------------------------------------------------------
consensus_14228#0 AATCGGAAATCTTCTGTGTTTATGAGTACCAATC-----CCACAAGCAGTCGACTAGGGA 705
consensus_14228#2 AATCGGAAATCTTCTGTGTTTATGAGTACCAATC-----CCGAGAGGTGGCAAAACGGCG 744
consensus_14228#1 TCAAGCTCGAGGCGGCGAAGGTGGTCTGA--ATCTGATGCACTGCGCACTCCAACTCGTC 821
consensus_14228#4 CGATGTTCGATGC----------------------------------------------- 506
consensus_14228#3 ACGAGACCTAGAATGGAACCGCACTCCGATCATCTTGTTAGGTACGCAAGCGTACAAACA 667
consensus_14228#5 ------------------------------------------------------------
consensus_14228#6 ------------------------------------------------------------
consensus_14228#0 ACGAGACCTAGAATGGAACCGCACTCCGATCATCTTGTTAGGTACGCAAGCGTACAAACA 765
consensus_14228#2 ATGT--TCGATGCCGTGGTGGGGAGACGGTAGTG-------------------------- 776
consensus_14228#1 AAGGG------------------------------------------------------- 826
consensus_14228#4 ------------------------------------------------------------
consensus_14228#3 AGGGCTTCTCTTCAACACTCGAGAGGTGGCAAAACGGCGATGTTCGATGCCGTGGTGGGG 727
consensus_14228#5 ------------------------------------------------------------
consensus_14228#6 ------------------------------------------------------------
consensus_14228#0 AGGGCTTCTCTTCAACACTCGAGAGGTGGCAAAACGGCGATGTTCGATGCCGTGGTGGGG 825
consensus_14228#2 ------------------------------------------------------------
consensus_14228#1 -------------------------
consensus_14228#4 -------------------------
consensus_14228#3 AGACGGTAGTG-------------- 738
consensus_14228#5 -------------------------
consensus_14228#6 -------------------------
consensus_14228#0 AGACGGTAGTGAAGCAGAGGTGGAC 850
consensus_14228#2 -------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||