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Oryza sativa
cluster # 14234 cluster # 14234       Sequences # 15       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14234#0 length = 864 sequences # 14  
consensus_14234#1 length = 780 sequences # 1  

consensusID : consensus_14234#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 14
consensus length = 864
fasta sequence
                              [CTCCCCGACCCGAGGCGGCGGCGACCCTAGCTTCCCGATTCTCCCATCCCCCCCATGGCGTCCCACCTCGACTTCCGCTACCTCGACGAGGGCCTCGGCGGCGAGCGCGGGAAG-CG-CAAGCGCCGCGAGGCGGAGGAGGCGGCCGCCGCCGACTCCATGGACCTCGACGCCGACGCCGACGCGCCGAGGCCGTCCAAGCTCCGCGCGGTGCCCTCCCTGTCCGACCCCTCCAAGCCCGCCTCCTTCGGGCAGCCCACCTACGACGGCGTCATCGCCGGGCGCGTCTCCGGGCGGCGCTGGAAGGAGGCCCGCACCCGCCGCGCCTCCGCGCTGGCGGCGTCCCGGAAGCCGACCCCGCTGGAGCAGCGCGCCCGCGACAAGTCCCTGAAGCGCGCGTACCAGGCCCGCGTGGCGGAGCTCAAGGAGGAGATCCGGCAGAGCAAGGCGGCGAAGCGGAAGCAGCGGGAGGAGCGGGAGAAGCGCAAGAAGGAGAACGTGCTCCGCTCGGG-CACCAAG-CTGCAGCGGGTCACCAACCCCAAG-ACCATCCAGAAGATCGCCAAGTCCAAGAAGCGGAAGCAGCTCAAGGTCGTCCCCGACGAGTTCCTCGGCGGCAAGAAGTCGGACGCCAACCGCCGCATGCAGGTGCCCGGCCTAGACAACTGAAGATCGCCTTACCAAACAAATCCTTTTGTTATCTGTGATACCCATGTTACAGTGCAGCTTACTAGTTTTTACATTGCGCAACGAGATTTTGTACTAATGCTTTAGCATGAGATTTTAAGTA-TGGTCAATCCAGCAA-TTATGTTGGTATGAAT-GATGTTGGGTGCAGGTTCGTTGCTGAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK069935             [CTCCCCGACCCGAGGCGGCGGCGACCCTAGCTTCCCGATTCTCCCATCCCCCCCATGGCGTCCCACCTCGACTTCCGCTACCTCGACGAGGGCCTCGGCGGCGAGCGCGGGAAG CG CAAGCGCCGCGAGGCGGAGGAGGCGGCCGCCGCCGACTCCATGGACCTCGACGCCGACGCCGACGCGCCGAGGCCGTCCAAGCTCCGCGCGGTGCCCTCCCTGTCCGACCCCTCCAAGCCCGCCTCCTTCGGGCAGCCCACCTACGACGGCGTCATCGCCGGGCGCGTCTCCGGGCGGCGCTGGAAGGAGGCCCGCACCCGCCGCGCCTCCGCGCTGGCGGCGTCCCGGAAGCCGACCCCGCTGGAGCAGCGCGCCCGCGACAAGTCCCTGAAGCGCGCGTACCAGGCCCGCGTGGCGGAGCTCAAGGAGGAGATCCGGCAGAGCAAGGCGGCGAAGCGGAAGCAGCGGGAGGAGCGGGAGAAGCGCAAGAAGGAGAACGTGCTCCGCTCGGG CACCAAG CTGCAGCGGGTCACCAACCCCAAG ACCATCCAGAAGATCGCCAAGTCCAAGAAGCGGAAGCAGCTCAAGGTCGTCCCCGACGAGTTCCTCGGCGGCAAGAAGTCGGACGCCAACCGCCGCATGCAGGTGCCCGGCCTAGACAACTGAAGATCGCCTTACCAAACAAATCCTTTTGTTATCTGTGATACCCATGTTACAGTGCAGCTTACTAGTTTTTACATTGCGCAACGAGATTTTGTACTAATGCTTTAGCATGAGATTTTAAGTA TGGTCAATCCAGCAA TTA                                                               ]
[+] EMBL AK099175             [ TCCCCGACCCGAGGCGGCGGCGACCCTAGCTTCCCGATTCTCCCATCCCCCCCATGGCGTCCCACCTCGACTTCCGCTACCTCGACGAGGGCCTCGGCGGCGAGCGCGGGAAG CG CAAGCGCCGCGAGGCGGAGGAGGCGGCCGCCGCCGACTCCATGGACCTCGACGCCGACGCCGACGCGCCGAGGCCGTCCAAGCTCCGCGCGGTGCCCTCCCTGTCCGACCCCTCCAAGCCCGCCTCCTTCGGGCAGCCCACCTACGACGGCGTCATCGCCGGGCGCGTCTCCGGGCGGCGCTGGAAGGAGGCCCGCACCCGCCGCGCCTCCGCGCTGGCGGCGTCCCGGAAGCCGACCCCGCTGGAGCAGCGCGCCCGCGACAAGTCCCTGAAGCGCGCGTACCAGGCCCGCGTGGCGGAGCTCAAGGAGGAGATCCGGCAGAGCAAGGCGGCGAAGCGGAAGCAGCGGGAGGAGCGGGAGAAGCGCAAGAAGGAGAACGTGCTCCGCTCGGG CACCAAG CTGCAGCGGGTCACCAACCCCAAG ACCATCCAGAAGATCGCCAAGTCCAAGAAGCGGAAGCAGCTCAAGGTCGTCCCCGACGAGTTCCTCGGCGGCAAGAAGTCGGACGCCAACCGCCGCATGCAGGTGCCCGGCCTAGACAACTGAAGATCGCCTTACCAAACAAATCCTTTTGTTATCTGTGATACCCATGTTACAGTGCAGCTTACTAGTTTTTACATTGCGCAACGAG                                                                                                                       ]
[+] EMBL AK103993             [  CCCCGACCCGAGGCGGCGGCGACCCTAGCTTCCCGATTCTCCCATCCCCCCCATGGCGTCCCACCTCGACTTCCGCTACCTCGACGAGGGCCTCGGCGGCGAGCGCGGGAAG CG CAAGCGCCGCGAGGCGGAGGAGGCGGCCGCCGCCGACTCCATGGACCTCGACGCCGACGCCGACGCGCCGAGGCCGTCCAAGCTCCGCGCGGTGCCCTCCCTGTCCGACCCCTCCAAGCCCGCCTCCTTCGGGCAGCCCACCTACGACGGCGTCATCGCCGGGCGCGTCTCCGGGCGGCGCTGGAAGGAGGCCCGCACCCGCCGCGCCTCCGCGCTGGCGGCGTCCCGGAAGCCGACCCCGCTGGAGCAGCGCGCCCGCGACAAGTCCCTGAAGCGCGCGTACCAGGCCCGCGTGGCGGAGCTCAAGGAGGAGATCCGGCAGAGCAAGGCGGCGAAGCGGAAGCAGCGGGAGGAGCGGGAGAAGCGCAAGAAGGAGAACGTGCTCCGCTCGGG CACCAAG CTGCAGCGGGTCACCAACCCCAAG ACCATCCAGAAGATCGCCAAGTCCAAGAAGCGGAAGCAGCTCAAGGTCGTCCCCGACGAGTTCCTCGGCGGCAAGAAGTCGGACGCCAACCGCCGCATGCAGGTGCCCGGCCTAGACAACTGAAGATCGCCTTACCAAACAAATCCTTTTGTTATCTGTGATACCCATGTTACAGTGCAGCTTACTAGTTTTTACATTGCGCAACGAGATTTTGTACTAATGCTTTAGCATGAGATTTTAAGTA TG                                                                                ]
[+] EMBL AU225685             [            gccgctCGGCGACCCTAGCTTCCCGATTCTCCCATCCCCCCCATGGCGTCCCACCTCGACTTCCGCTACCTCGACGAGGGCCTCGGCGGCGAGCGCGGGAAGCCGCCAAGCGCCGCGAGGCGGAGGAGGCGGCCGCCGCCGACTCCATGGACCTCGACGCCGACGCCGACGCGCCGAGGCCGTCCAAGCTCCGCGCGGTGCCCTCCCTGTCCGACCCCTCCAAGCCCGCCTCCTTCGGGCAGCCCACCTACGACGGCGTCATCGCCGGGCGCGTCTCCGGGCGGCGCTGGAAGGAGGCCCGCACCCGCCGCGCCTCCGCGCTGGCGGCGTCCCGGAAGCCGACCCCGCTGGAGCAGCGCGCCCGCGACAAGTCCCTGAAGCGCGCGTACCAGGCCCGCGTGGCGGAGCTCAAGGAGGAGATC                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CB680898             [                                                                                                           CGGGAAG CG CAAGCGCCGCGAGGCGGAGGAGGCGGCCGCCGCCGACTCCATGGACCTCGACGCCGACGCCGACGCGCCGAGGCCGTCCAAGCTCCGCGCGGTGCCCTCCCTGTCCGACCCCTCCAAGCCCGCCTCCTTCGGGCAGCCCACCTACGACGGCGTCATCGCCGGGCGCGTCTCCGGGCGGCGCTGGAAGGAGGCCCGCACCCGCCGCGCCTCCGCGCTGGCGGCGTCCCGGAAGCCGACCCCGCTGGAGCAGCGCGCCCGCGACAAGTCCCTGAAGCGCGCGTACCAGGCCCGCGTGGCGGAGCTCAAGGAGGAGATCCGGCAGAGCAAGGCGGCGAAGCGGAAGCAGCGGGAGGAGCGGGAGAAGCGCAAGAAGGAGAACGTGCTCCGCTCGGG CACCAAG CTGCAGCGGGTCACCAACCCCAAG ACCATCCAGAAGATCGCCAAGTCCAAGAAGCGGAAGCAGCTCAAGGTCGTCCCCGACGAGTTCCTCGGCGGCAAGAAGTCGGACGCCAACCGCCGTATGCAGGTGCCCGGCCTAGACAACTGAAGATCGCCTTACCAAACAAATCCTTTTGTTATCTGTGATACCCATGTTACAGTGCAGCTTACTAGTTTTTACATTGCGCAACGAGATTTTGTACTAATGCTTTAGCATGAGATTTTAAGTA TGGTCAATCCAGCAA TTATGTTGGTATGAAT GATGTTGGGTGCAGGTTCGTTGCTGAAAAAAAAAga             ]
[+] EMBL AU093346             [                                                                                                                                                            CCATGGACCTCGACGCCGACGCCGACGCGCCGAGGCCGTCCAAGCTCCGCGCGGTGCCCTCCCTGTCCGACCCCTCCAAGCCCGCCTCCTTCGGGCAGCCCACCTACGACGGCGTCATCGCCGGGCGCGTCTCCGGGCGGCGCTGGAAGGAGGCCCGCACCCGCCGCGCCTCCGCGCTGGCGGCGTCCCGGAAGCCGACCCCGCTGGAGCAGCGCGCCCGCGACAAGTCCCTGAAGCGCGCGTACCAGGCCCGCGTGGCGGAGCTCAAGGAGGAGATCCGGCAGAGCAAGGCGGCGAA CGGAAGCAGCGGGAGGAGCGGGAGAAGCGCAAGAAGGAGAACGTGCTCCGCTCGGG CACCAAG CTGCAGCGGGTCACCAACCCCAAG ACCATCCAGAAGATCGCCAAGTCCAAGAAGCGGAAGCAGCTCAAGGTCGTCCCCGACGAGTTCCTCGGCGGCAAGAAGTCGGACGCCAACCGCCGCATGCAGGTGCCCGGCCTAGACAACTGAAGATCGNCTTACCAAACAAATCCTTTTGTTATCTGTGATACCCATGTTACAGTGCAGTTTACTAGTTTTTACATTGCGCAACGAGATTTTGTACTAATGNTTTAGCATGAGATTTTAAGTA TGGNCAATCCAGCAATTTATGTTGGTATGAATNGATATTGGGT                                       ]
[+] EMBL CF324658             [                                                                                                                                                             CATGGACCTCGACGCCGACGCCGACGCGCCGAGGCCGTCCAAGCTCCGCGCGGTGCCCTCCCTGTCCGACCCCTCCAAGCCCGCCTCCTTCGGGCAGCCCACCTACGACGGCGTCATCGCCGGGCGCGTCTCCGGGCGGCGCTGGAAGGAGGCCCGCACCCGCCGCGCCTCCGCGCTGGCGGCGTCCCGGAAGCCGACCCCGCTGGAGCAGCGCGCCCGCGACAAGTCCCTGAAGCGCGCGTACCAGGCCCGCGTGGCGGAGCTCAAGGAGGAGATCCGGCAGAGCAAGGCGGCGAAGCGGAAGCAGCGGGAGGAGCGGGAGAAGCGCAAGAAGGAGAACGTGCTCCGCTCGGG CACCAAG CTGCAGCGGGTCACCAACCCCAAG ACCATCCAGAAGATCGCCAAGTCCAAGAAGCGGAAGCAGCTCAAGGTCGTCCCCGACGAGTTCCTCGGCGGCAAGAAGTCGGACGCCAACCGCCGCATGCAGGTGCCCGGCCTAGACAACTGAAGATCGCCTTACCAAACAAATCCTTTTGTTATCTGTGATACCCATGTTACAGTGCAGCTTACTAGTTTTTACATTGCGCAACGAGATTTTGTACTAATGCTTTAGCATGAGATTTTAAGTA TGGTCAATCCAGCAA TTATGTTGGTATGAAaaaa                                               ]
[+] EMBL BE039593             [                                                                                                                                                                                                                                             CCGCCTCCTTCGGGCAGCCCACCTACGACGGCGTCATCGCCGGGCGCGTCTCCGGGCGGCGCTGGAAGGAGGCTCGCACCCGCCGCGCCTCCGCGCTGGCGGCGTCCCGGAAGCCGACCCCGCTGGAGCAGCGCGCCCGCGACAAGTCCCTGAAGCGCGCGTACCAGGCCCGCGTGGCGGAGCTCAAGGAGGAGATCCGGCAGAGCAAGGCGGCGAAGCGGAAGCAGCGGGAGGAGCGGGAGAAGCGCAAGAAGGAGAACGTGCTCCGCTCGGG CACCAAG CTGCAGCGGGTCACCAACCCCAAG ACCATCCAGAAGATCGCCAAGTCCAAGAAGCGGAAGCAGCTCAAGGTCGTCCCCGACGAGTTCCTCGGCGGCAAGAAGTCGGACGCCAACCGCCGCATGCAGGTGCCCGGCCTAGACAACTGAAGATCGCCTTACCAAACAAATCCTTTTGTTATCTGTGATACCCATGGTACAGTGCAGCTTACTAGCTTTTACATTGCGCAACGAGATTTTGTACTA                                                                                                            ]
[+] EMBL BI798505             [                                                                                                                                                                                                                                                                                                                                                                                                                                       AGGAGGAGATCCGGCAGAGCAAGGCGGCGAAGCGGAAGCAGCGGGAGGAGCGGGAGAAGCGCAAGAAGGAGAACGTGCTCCGCTCGGG CACCAAG CTGCAGCGGGTCACCAACCCCAAG ACCATCCAGAAGATCGCCAAGTCCAAGAAGCGGAAGCAGCTCAAGGTCGTCCCCGACGAGTTCCTCGGCGGCAAGAAGTCGGACGCCAACCGCCGCATGCCGGTGCCCGGCCTAGACAACTGAAGATCGCCTTACCAAACAAATCCTTTTGTTATCTGTGATACCCATGTTACAGTGCAGCTTACTAGCTTTTACATTGCGCAACGAGATTTTGTACTAATGCTTTAGCATGAGATTTTAAGTACCGGTCAATCCAGCAA TTATGTTGGTATGAAaaaa                                               ]
[+] EMBL BE229462             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        cgaGGAGAAGCGCAAGAAGGAGAACGTGCTCCGCTCGGGRCACCAAGYCTGCAGCGRGTCACCAACCCCAAGMACCATCCAGAAGATCGCCAAGTCCAAGAAGCGGAAGCAGCTCAAGGTCGTCCCCGACGAGTTCCTCGGCGGCAAGAAGTCGGACGCCAACCGCCGCATGCAGGTGCCCGGCCTAGACAACTGAAGATCGCCTTACCAAACAAATCCTTTTGTTATCTGTGATACCCATGTTACAGTGCAGCTTACTAGTTTTTACATTGCGCAACGAGATTTTGTACTAATGCTTTAGCATGAGATTTTAAGTA TGGTCAATCCAGCAA TTATGTTGGTATGAAaaaaaaaa                                           ]
[-] EMBL D42621               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               gCGTCCCCGNCGAGTTCCTCGGCGGCAAGAAGTCGGACGCCAACNGCNGCATGCAGGTGCCCGGCCTAGACAACTGAAGATCGCCTTACCAAACAAATCCTTTTGTTATCTGTGATACCCATGTTACAGTGCAGCTTACTAGTTTTTACATTGCGCAACGAGATTTTGTACTAATGCTTTAGCATGAGATTTTAAGTA TGGTCAATCCAGCAA TTATGTTGGTATGAAT GATGTTGGGTGCAGG                                  ]
[+] EMBL C97839               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AACCGCCNCATGCAGGTGCCCGGCCTAGACAACTGAAGATCGCCTTACCAAANAAATCCTTTTGTTANCTGTGATACCCATGTTACAGTGCAGCTTACTAGTTTTTACATTGCGCAACGAGATTTTGTACTAATGCTTTAGCATGAGATTTTAAGTA TGGTCAATCCAGCAA TTNTGTTGGTATGAAT GATGTTGGGTGCNGGTTCGTTGCTGAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF330034             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GTGCAGCTTACTAGTTTTTACATTGCGCAACGAGATTTTGTACTAATGCTTTAGCATGAGATTTTAAGTA TGGTCAATCCAGCAA TTATGTTGGTATGAAT GATGTTGGGTGCAGGTTCGTTGCTGAAAAAAAAAAAA            ]
[-] EMBL CF330035             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TGCAGCTTACTAGTTTTTACATTGCGCAACGAGATTTTGTACTAATGCTTTAGCATGAGATTTTAAGTA TGGTCAATCCAGCAA TTATGTTGGTATGAAT GATGTTGGGTGCAGGTTCGTTGCTGAAAAAAAAAAAAAAAAA       ]


>consensus_14234#0 CTCCCCGACCCGAGGCGGCGGCGACCCTAGCTTCCCGATTCTCCCATCCCCCCCATGGCG TCCCACCTCGACTTCCGCTACCTCGACGAGGGCCTCGGCGGCGAGCGCGGGAAGCGCAAG CGCCGCGAGGCGGAGGAGGCGGCCGCCGCCGACTCCATGGACCTCGACGCCGACGCCGAC GCGCCGAGGCCGTCCAAGCTCCGCGCGGTGCCCTCCCTGTCCGACCCCTCCAAGCCCGCC TCCTTCGGGCAGCCCACCTACGACGGCGTCATCGCCGGGCGCGTCTCCGGGCGGCGCTGG AAGGAGGCCCGCACCCGCCGCGCCTCCGCGCTGGCGGCGTCCCGGAAGCCGACCCCGCTG GAGCAGCGCGCCCGCGACAAGTCCCTGAAGCGCGCGTACCAGGCCCGCGTGGCGGAGCTC AAGGAGGAGATCCGGCAGAGCAAGGCGGCGAAGCGGAAGCAGCGGGAGGAGCGGGAGAAG CGCAAGAAGGAGAACGTGCTCCGCTCGGGCACCAAGCTGCAGCGGGTCACCAACCCCAAG ACCATCCAGAAGATCGCCAAGTCCAAGAAGCGGAAGCAGCTCAAGGTCGTCCCCGACGAG TTCCTCGGCGGCAAGAAGTCGGACGCCAACCGCCGCATGCAGGTGCCCGGCCTAGACAAC TGAAGATCGCCTTACCAAACAAATCCTTTTGTTATCTGTGATACCCATGTTACAGTGCAG CTTACTAGTTTTTACATTGCGCAACGAGATTTTGTACTAATGCTTTAGCATGAGATTTTA AGTATGGTCAATCCAGCAATTATGTTGGTATGAATGATGTTGGGTGCAGGTTCGTTGCTG AAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_14234#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 780
fasta sequence
                              [GAGGAAGAGAGCGAGCAGACACATAGAGAGACGCAGCAGACACGCAGACACGCGACACACGCGAGGCCGAGCAAGCTCCACGCGGAGCCCTACCTGTCCGACCCCTCCAAGCCCGACTCCTTCGGGCAGCCCACCTACGACGGCGTCATCGCCGGGCGCGTCTCCGGGCGGCGCTGGAAGGAGGCTCGCACCCGCCGCGCCTCCGTGCTGGCGGCGTCCCGGAAGCCGACCCCGCTGGAGCAGCGCGCCCGCGACAAGTCCCTGAAGCGCGCGTACCAGGCCCGCGTGGCGGAGCTCAAGGAGGAGATCCCGCAGAGCAAGGCGCGCCAAGCGCGACGCAGCGCCAGGATCGGGAGAAGCGCACGAAGGAGAACCTTCTCCTTTCTGGCACTAATCTGTAGCGGGTACACTACCTCTCAGACCATTTATTAGAGTTGACTAGTCCATCTGACATTTGTTCCTTTGGACCTCGCCTATCTGCAGTTTCTCCCGCCTTCTTCTGTCCTTGTCCCCCCTTCCTCTGCTCCTATCCCCCTCCAATTTAGTCTATATTGTTTTTGTCACTTCGCACGGGTGATGCTTGATCTGTTATGATTTTGCTTTCACCATTATTTTCTCTGTTTCTAATCTCCTCCCCCTTATCCTTTTGCCCTCTTCTCCTTGTAGTTCCCCGTATGCGTTCTGTTTTTGCTTTAATCATAACTTTTTTTTTTCCTTTTTCCTTGTTTCTTTTTCCTCTTTCTCTGCTACATTTCACTTCTTTTTTTTGATTTTTTATTA]

[+] EMBL BE041007             [GAGGAAGAGAGCGAGCAGACACATAGAGAGACGCAGCAGACACGCAGACACGCGACACACGCGAGGCCGAGCAAGCTCCACGCGGAGCCCTACCTGTCCGACCCCTCCAAGCCCGACTCCTTCGGGCAGCCCACCTACGACGGCGTCATCGCCGGGCGCGTCTCCGGGCGGCGCTGGAAGGAGGCTCGCACCCGCCGCGCCTCCGTGCTGGCGGCGTCCCGGAAGCCGACCCCGCTGGAGCAGCGCGCCCGCGACAAGTCCCTGAAGCGCGCGTACCAGGCCCGCGTGGCGGAGCTCAAGGAGGAGATCCCGCAGAGCAAGGCGCGCCAAGCGCGACGCAGCGCCAGGATCGGGAGAAGCGCACGAAGGAGAACCTTCTCCTTTCTGGCACTAATCTGTAGCGGGTACACTACCTCTCAGACCATTTATTAGAGTTGACTAGTCCATCTGACATTTGTTCCTTTGGACCTCGCCTATCTGCAGTTTCTCCCGCCTTCTTCTGTCCTTGTCCCCCCTTCCTCTGCTCCTATCCCCCTCCAATTTAGTCTATATTGTTTTTGTCACTTCGCACGGGTGATGCTTGATCTGTTATGATTTTGCTTTCACCATTATTTTCTCTGTTTCTAATCTCCTCCCCCTTATCCTTTTGCCCTCTTCTCCTTGTAGTTCCCCGTATGCGTTCTGTTTTTGCTTTAATCATAACTTTTTTTTTTCCTTTTTCCTTGTTTCTTTTTCCTCTTTCTCTGCTACATTTCACTTCTTTTTTTTGATTTTTTATTA]


>consensus_14234#1 GAGGAAGAGAGCGAGCAGACACATAGAGAGACGCAGCAGACACGCAGACACGCGACACAC GCGAGGCCGAGCAAGCTCCACGCGGAGCCCTACCTGTCCGACCCCTCCAAGCCCGACTCC TTCGGGCAGCCCACCTACGACGGCGTCATCGCCGGGCGCGTCTCCGGGCGGCGCTGGAAG GAGGCTCGCACCCGCCGCGCCTCCGTGCTGGCGGCGTCCCGGAAGCCGACCCCGCTGGAG CAGCGCGCCCGCGACAAGTCCCTGAAGCGCGCGTACCAGGCCCGCGTGGCGGAGCTCAAG GAGGAGATCCCGCAGAGCAAGGCGCGCCAAGCGCGACGCAGCGCCAGGATCGGGAGAAGC GCACGAAGGAGAACCTTCTCCTTTCTGGCACTAATCTGTAGCGGGTACACTACCTCTCAG ACCATTTATTAGAGTTGACTAGTCCATCTGACATTTGTTCCTTTGGACCTCGCCTATCTG CAGTTTCTCCCGCCTTCTTCTGTCCTTGTCCCCCCTTCCTCTGCTCCTATCCCCCTCCAA TTTAGTCTATATTGTTTTTGTCACTTCGCACGGGTGATGCTTGATCTGTTATGATTTTGC TTTCACCATTATTTTCTCTGTTTCTAATCTCCTCCCCCTTATCCTTTTGCCCTCTTCTCC TTGTAGTTCCCCGTATGCGTTCTGTTTTTGCTTTAATCATAACTTTTTTTTTTCCTTTTT CCTTGTTTCTTTTTCCTCTTTCTCTGCTACATTTCACTTCTTTTTTTTGATTTTTTATTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14234#0      CTCCCCGACCCGAGGCGGCGGCGACCCTAGCTTCCCGATTCTCCCATCCCCCCCATGGCG 60
consensus_14234#1      ------------------------------------------------------------
                                                                                   

consensus_14234#0      TCCCACCTCGACTTCCGCTACCTCGACGAGGGCCTCGGCGGCGAGCGCGGGAAGCGCAAG 120
consensus_14234#1      ------------------------------------------------------------
                                                                                   

consensus_14234#0      CGCCGCGAGGCGGAGGAGGCGGCCGCCGCCGACTCCATGGACCTCGACGCCGACGC-CGA 179
consensus_14234#1      ----GAGGAAGAGAGCGAGCAGACACATAGAGAGACGCAG-CAGACACGCAGACACGCGA 55
                           * *     ***   ** * * *         *   * *    **** *** * ***

consensus_14234#0      CGCGC-CGAGGCCGTCCAAGCTCCGCGCGGTGCCCTCCCTGTCCGACCCCTCCAAGCCCG 238
consensus_14234#1      CACACGCGAGGCCGAGCAAGCTCCACGCGGAGCCCTACCTGTCCGACCCCTCCAAGCCCG 115
                       * * * ********  ******** ***** ***** ***********************

consensus_14234#0      CCTCCTTCGGGCAGCCCACCTACGACGGCGTCATCGCCGGGCGCGTCTCCGGGCGGCGCT 298
consensus_14234#1      ACTCCTTCGGGCAGCCCACCTACGACGGCGTCATCGCCGGGCGCGTCTCCGGGCGGCGCT 175
                        ***********************************************************

consensus_14234#0      GGAAGGAGGCCCGCACCCGCCGCGCCTCCGCGCTGGCGGCGTCCCGGAAGCCGACCCCGC 358
consensus_14234#1      GGAAGGAGGCTCGCACCCGCCGCGCCTCCGTGCTGGCGGCGTCCCGGAAGCCGACCCCGC 235
                       ********** ******************* *****************************

consensus_14234#0      TGGAGCAGCGCGCCCGCGACAAGTCCCTGAAGCGCGCGTACCAGGCCCGCGTGGCGGAGC 418
consensus_14234#1      TGGAGCAGCGCGCCCGCGACAAGTCCCTGAAGCGCGCGTACCAGGCCCGCGTGGCGGAGC 295
                       ************************************************************

consensus_14234#0      TCAAGGAGGAGATCCGGCAGAGCAAGGCG-GCGAAGCG-GAAGCAGCGGGAGGAGCGGGA 476
consensus_14234#1      TCAAGGAGGAGATCCCGCAGAGCAAGGCGCGCCAAGCGCGACGCAGCGCCAGGATCGGGA 355
                       *************** ************* ** ***** ** ******  **** *****

consensus_14234#0      GAAGCGCAAGAAGGAGAACGTGCTCCGCTCGGGCACCAAGCTGCAGCGGGT-CACCAACC 535
consensus_14234#1      GAAGCGCACGAAGGAGAACCTTCTCCTTTCTGGCACTAATCTGTAGCGGGTACACTACCT 415
                       ******** ********** * ****  ** ***** ** *** ******* *** * * 

consensus_14234#0      CCAAGACCATCCAGAAGA-TCGCCAAGTCCAAGAAGCGGAAGCAGCTCAAGGTCGTCCCC 594
consensus_14234#1      CTCAGACCATTTATTAGAGTTGACTAGTCCATCTGACATTTGTTCCTTTGGACCTCGCCT 475
                       *  *******  *  *** * * * ******     *    *   **   *  *   ** 

consensus_14234#0      G---ACGAGTTCCTCGGCGGCAAGAAGTCGGACGCCAACCGCCGCATGCAGGTGCCCGGC 651
consensus_14234#1      ATCTGCAGTTTCTCCCGCCTTCTTCTGTCCTTGTCCCCCCTTCCTCTGCTCCTATCCCCC 535
                            *   ***  * **        ***     **  **  *   ***   *  **  *

consensus_14234#0      -CTAGACAACTGAAGATCGCCTTA------CCAAACAAATCCTTTTGTTATCTGTGATAC 704
consensus_14234#1      TCCAATTTAGTCTATATTGTTTTTGTCACTTCGCACGGGTGATGCT-TGATCTGTTATGA 594
                        * *    * *  * ** *  **        *  **   *  *  * * ****** **  

consensus_14234#0      CCATG-TTACAGTGCAGCTTACTA-GTTTTTACATTGCGCAACGAGATTTTGTACTAATG 762
consensus_14234#1      TTTTGCTTTCACCATTATTTTCTCTGTTTCTAATCTCCTCCCCCTTATCCTTTTGCCCT- 653
                          ** ** **       ** **  **** **   * * *  *   **  * *     * 

consensus_14234#0      CTTTAGCATGAGATTTTAAGTATGGTCAATCCAGCAATTATGTTGGTATGAATGATGTTG 822
consensus_14234#1      CTTCTCCTTGTAGTTCCCCGTATG---CGTTCTGTTTTTGCTTTAATCATAACTTTTTTT 710
                       ***   * **   **    *****     * * *   **   **  *   **   * ** 

consensus_14234#0      GGTGCAGGTTCGTTGCTGAAAAAAAAAAAAAAAAAAAAAAAA------------------ 864
consensus_14234#1      TTTCCTTTTTCCTTGTTTCTTTTTCCTCTTTCTCTGCTACATTTCACTTCTTTTTTTTGA 770
                         * *   *** *** *                     * *                   

consensus_14234#0      ----------
consensus_14234#1      TTTTTTATTA 780
                                 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)