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Oryza sativa
cluster # 14237 cluster # 14237       Sequences # 15       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14237#0 length = 817 sequences # 11  
consensus_14237#1 length = 427 sequences # 1  
consensus_14237#2 length = 423 sequences # 1  
consensus_14237#3 length = 350 sequences # 1  
consensus_14237#4 length = 252 sequences # 1  

consensusID : consensus_14237#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 817
fasta sequence
                              [CAACCCAAAGGAAATCCATCCATGGCGATCTCCAAGCTCCAGCTCGCCCTCCTCGCCGCCGCAATGGC-GGC-GGC-GGCGATCTCCCCCACCGCCTCCGGC-GCCTACACCGGCTGC-GC-GACGCCGAGGAAGGTGACGATCCAGAACCTCTCCGGCCG-CGACCTGCCCCTCTCCGAGACGCCGCTGGCGAACAGCGGCGCGCTGTTCGGCGCCGGCTACGTGCTCCGCCACGGCACGCACGCCGAGTTCACGACGTGCCTGTGGACGGGGCGCGTGGCGGCGCCGGGGGCGGCGGTGGTGGAGTTCCACGTCGGCCCCGACGGCGGCGCGTGGTACCAGGTGGACAACCGCCAGGCCGGGTCGCCGGTGAAGGTCACCGTGACGCCGCACGGCCGGCCGCTCCAGGGCCACTGCCCCGCCGCCGGGTGCCGCGGCGGCGGCCAGTGCTTCGCCGACGCCGT-CCCCGGCGGCAACTGCCACGCCGTCGACGAGCTCAAGATCATCTACTACAGCCCGTGATTTTGGTTTTGGTTTGGTTAAATTTCGTTTGGATTAGTGGGTGATTAGGCCGTCTATTAGTTTTAAGTTAATCATTT-GGATCGTCGTTGAGTCCGTCTACTAGCTATATGTAGCTACTGCTAGCTTT-AGCTAGTGAGTGTGTCAGTGTGTGACAGTGTCACGTCATCGCATGCATGCATGCATTGATGTCGACATGTCCTCGTAATGTGCGTCGTGTTTTGTCTTGTCGTGTTGTTGATTAATCCTCGATAATTTGATGTGCATGCATTGTTTGCA----AAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK107485             [CAACCCAAAGGAAATCCATCCATGGCGATCTCCAAGCTCCAGCTCGCCCTCCTCGCCGCCGCAATGGC GGC GGC GGCGATCTCCCCCACCGCCTCCGGC GCCTACACCGGCTGC GC GACGCCGAGGAAGGTGACGATCCAGAACCTCTCCGGCCG CGACCTGCCCCTCTCCGAGACGCCGCTGGCGAACAGCGGCGCGCTGTTCGGCGCCGGCTACGTGCTCCGCCATGGCACGCACGCCGAGTTCACGACGTGCCTGTGGACGGGGCGCGTGGCGGCGCCGGGGGCGGGGGTGGTGGAGTTCCACGTCGGCCCCGACGGCGGCGCGTGGTACCAGGTGGACAACCGCCAGGCCGGGTCGCCGGTGAAGGTCACCGTGACGCCGCACGGCCGGCCGCTCCAGAGCCACTGCCCCGCCGCCGGGTGCCGCGGCGGCGGCCAGTGCTTCGCCGACGCCGT CCCCGGCGGCAACTGCCACGCCGTCGACGAGCTCAAGATCATCTACTACAGCCCGTGATTTTGGTTTTGGTTTGGTTAAATTTCGTTTGGATTAGTGGGTGATTAGGCCGTCTATTAGTTTTAAGTTAATCATTT GGATCGTCGTTGAGTCCGTCTACTAGCTATATGTAGCTACTGCTAGCTTT AGCTAGTGAGTGTGTCAGTGTGTGACAGTGTCACGTCATCGCATGCATGCATGCATTGATGTCGACATGTCCTCGTAATGTGCGTCGTGTTTTGTCTTGTCGTGTTGTTGATTAATCCTCGATAATTTGATGTGCATG                                        ]
[+] EMBL CA757074             [       caatccATCTATCCATGGCGATCTCCAAGCTCCAGCTCGCCCTCCTCGCCGCCGCAATGGC GGC GGC GGCGATCT   CCACCGCCTCCGGC GCCTACACCGGCTGC GC GACGCCGAGGAAGGTGACGATCCAGAACCTCTCCGGCCG CGACCTGCCCCTCTCGGAGACGCCGCTGGCGAACAGCGGCGCGCTGTTCGGCGCCGGCTACGTGCTCCGCCACGGCACGCACGCCGAGTTCACGACGTGCCTGTGGACGGGGCGCGTGGCGGCGCCGGGGGCGGCGACGGTGGAGTTCCACGTCGGCCCCGACGGCGGCGCGTGGTACCAGGTGGACAACCGCCAGGCCGGGTCGCCGGTGAAGGTCACCGTGACGCCGCACGGCCGGCCGCTCCAGGGCCACTGCCCCGCCGCCGGGTGCCGCGGCGGCGGCCAGTGCTTCGCCGACGCCGT CCCCGGCGGCAACTGCCACGCCGTCGACGAGCTCAAGATCATCTACTACAGCCCGTGATTTTGGTTTTGGTTTGGTTAAATTTCGTTTGGATTAGTGGGTGATTAGGCCGTCCATTAAGTTTAAGTTAATCATTTCCGATCGTCGGGCAG CCCCCTACTAGCTATATTTAACTACTGGTAGCTTTAACCTAGGGACGGTGTCAGgggg                                                                                                                                                            ]
[+] EMBL AU183166             [               CCATCCATGGCGATCTCCAAGCTCCAGCTCGCCCTCCTCGCCGCCGCAATGGCAGGCAGGCAGGCGATCTCCCCCACCGCCTCCGGCAGCCTACACCGGCTGC GCAGACGCCGAGGAAGGTGACGATCCAGAACCTCTCCGGCCG CGACCTGCCCCTCTCCGAGACGCCGCTGGCGAACAGCGGCGCGCTGTTCGGCGCCGGCTACGTGCTCCGCCACGGCACGCACGCCGAGTTCACGACGTGCCTGTGGACGGGGCGCGTGGCGGCGCCGGGGGCGGCGGTGGTGGAGTTCCACGTCGGCCCCGACGGCGGCGCGTGGTACCAGGTGGACAACCGCCAGGCCGGGTCGCCGGTGAAGGTCACCGTGACGCCGCACGGCCGGCCGCTCCAGGGCCACTGCCCCGCCGCCGGGTGCCGCGGCGGCGGCCAGTG                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AU182745             [                 ATCCATGGCGATCTCCAAGCTCCAGCTCGCCCTCCTCGCCGCCGCAATGGC GGC GGC GGCGATCTCCCCCACCGCCTCCGGC GCCTACACCGGCTGC GC GACGCCGAGGAAGGTGACGATCCAGAACCTCTCCGGCCG TNACCTGCCCCTCTCCGAGACGCCGCTGGCGAACAGCGGCGCGCTGTTCGGCGCCGGCTACGTGCTCCGCCACGGCACGCACGCCGAGTTCACGACGTGCCTGTGGACGGGGCGCGTGGCGGCGCCGGGGGCGGCGGTGGTGGAGTTCCACGTCGGCCCCGACGGCGGCGCGTGGTACCAGGTGGACAACCGCCAGGCCGGGTCGCCGGTGAAGGTCACCGTGACGCCGCACGGCCGGCCGCTCCAGGGCCACTGCCCCGCCGCCGGGTGCCGCGGCGGCGGCCAGTGCTTCGCCGACGCCGTCCCCCGGCGGC                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AU173048             [                 ATCCATGGCGATCTCCAAGCTCCAGCTCGCCCTCCTCGCCGCCGCAATGGC GGC GGC GGCGATCTCCCCCACCGCCTCCGGC GCCTACACCGGCTGC GC GACGCCGAGGAAGGTGACGATCCAGAACCTCTCCGGCCGTTGACCTGCCCCTCTCCGAGACGCCGCTGGCGAACAGCGGCGCGCTGTTCGGCGCCGGCTACGTGCTCCGCCACGGCACGCACGCCGAGTTCACGACGTGCCTGTGGACGGGGCGCGTGGCGGCGCCGGGGGCGGCGGTGGTGGAGTTCCACGTCGGCCCCGACGGCGGCGCGTGGTACCAGGTGGACAACCGCCAGGCCGGGTCGCCGGTGAAGGTCACCGTGACGCCGCACGGCCGGCCGCTCCAGGGCCACTGCCCCGCCGCCGGGTGCCGCGGCGGCGGCCAGTG                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CF326238             [                         CGATCTCCAAGCTCCAGCTCGCCCTCCTCGCCGCCGCAATGGC GGC GGC GGCGATCTCCCCCACCGCCTCCGGC GCCTACACCGGCTGC GC GACGCCGAGGAAGGTGACGATCCAGAACCTCTCCGGCCG CGACCTGCCCCTCTCCGAGACGCCGCTGGCGAACAGCGGCGCGCTGTTCGGCGCCGGCTACGTGCTCCGCCACGGCACGCACGCCGAGTTCACGACGTGCCTGTGGACGGGGCGCGTGGCGGCGCCGGGGGCGGCGGTGGTGGAGTTCCACGTCGGCCCCGACGGCGGCGCGTGGTACCAGGTGGACAACCGCCAGGCCGGGTCGCCGGTGAAGGTCACCGTGACGCCGCACGGCCGGCCGCTCCAGGGCCACTGCCCCGCCGCCGGGTGCCGCGGCGGCGGCCAGTGCTTCGCCGACGCCGT CCCCGGCGGCAACTGCCACGCCGTCGACGAGCTCAAGATCATCTACTACAGCCCGTGATTTTGGTTTTGGTTTGGTTAAATTTCGTTTGGATTAGTGGGTGATTAGGCCGTCTATTAGTTNTAAGTTAATCATTT GGATCGTCGTCGAGTCCGTCTACTAGCTATATGTAGCTACTGCTAGCTT                                                                                                                                                                                    ]
[+] EMBL AU183169             [                             CTCCAAGCTCCAGCTCGCCCTCCTCGCCGCCGCAATGGC GGA GGA GGCGATCTCCCCCACCGCCTCCGGCAGCCTACACCGGCTGCAGC GACGCCGAGGAAGGTGACGATCCAGAACCTCTCCGGCCG CGACCTGCCCCTCTCCGAGACGCCGNTGGCGAACAGCGGCGCGCTGTTCGGCGCCGGCTACGTGCTCCGCCACGGCACGCACGCCGAGTTCACGACGTGCCTGTGGACGGGGCGCGTGGCGGCGCCGGGGGCGGAGGTGGTGGAGTTCCACGTCGGCCCCGACGGCGGCGCGTGGTACCAGGTGGACAACCGCCAGGCCGGGTCGCCGGTGAAGGTCACCGTGACGCCGCACGGCCGGCCGCTCCAGGGCCACTGCCCCGCCGCCGGGTGCCGCGGCGGCGGCCAGTGCTTCGCCGACGC                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AU183908             [                                                                                                                                                                                                                                        CACGGCACGCACGCCGAGTTCACGACGTGCCTGTGGACGGGGCGCGTGGCGGCGCCGGGGGCGGCGGTGGTGGAGTTCCACGTCGGCCCCGACGGCGGCGCGTGGTACCAGGTGGACAACCGCCAGGCCGGGTCGCCGGTGAAGGTCACCGTGACGCCGCACGGCCGGCCGNTCCAGGGCCACTGCCCCGCCGCCGGGTGCCGCGGCGGCGGCCAGTGCTTCGCCGACGCCGT CCCCGGCGGCAACTGCCACGCCGTCGACGAGCTCAAGATCATCTACTACAGCCCGTGATTTTGGTTTTGGTTTGGTTAAATTTCGTTTGGATTAGTGGGTGATTAGGCCGTCTATTAGTTTTAAGTTAATCATTT GGATCGTCGTTGAGTCCGTCTACTAGCTATATGTAGCTACTGCTAGCTTT AGCTAGTGAGTGTGTC                                                                                                                                                                  ]
[+] EMBL AU173049             [                                                                                                                                                                                                                                                                                                                                                                                           ACCGTGACGCCGCACGGCCGGCCGCTCCAGGGCCACTGCCCCGCCGCCGGGTGCCGCGGCGGCGGCCAGTGCTTCGCCGACGCCGT CCCCGGCGGCAACTGCCACGCCGTCGACGAGCTCAAGATCATCTACTACAGCCCGTGATTTTGGTTTTGGTTTGGTTAAATTTCGTTTGGATTAGTGGGTGATTAGGCCGTCTATTAGTTTTAAGTTAATCATTT GGATCGTCGTTGAGTCCGTCTACTAGCTATATGTAGCTACTGCTAGCTTT AGCTAGTGAGTGTGTCAGTGTGTGACAGTGTCACGTCATCGCATGCATGCATGCATTGATGTCGACATGTCCTCGTAATGTGCGTCGTGTTTTGTCTTGTCGTGTTGTTGATTAATCCTCGATAATTTGATGTGCATGCATTGTTTGCA    AAAAAA                   ]
[+] EMBL AU091606             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ngtnCTATTAGTTTTAAGTTAATCATTT GGATCGTCGTTGAGTCCGTCTACTAGCTATATGTAGCTACTGCTAGCTTT AGCTAGTGAGTGTGTCAGTGTGTGACAGTGTCACGTCATCGCATGCATGCATGCATTGATGTCGACATGTCCTCGTAATGTGCGTCGTGTTTTGTCTTGTCGTGTTGTTGATTAATCCTCGATAATTTGATGTGCATGCATTGTTTGCAGTGCAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU058288             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TGTGTCAGTGTGTGACAGTGTCACGTCATCGCATGCATGCATGCATTGATGTCGACATGTCCTCGTNATGTGCGTCGTGTTNTGNCTTGTCGTGTTGTTGATTAATCCTCGATAATTTGATGTGCATGCATTGTTTGCA    AAAna                    ]


>consensus_14237#0 CAACCCAAAGGAAATCCATCCATGGCGATCTCCAAGCTCCAGCTCGCCCTCCTCGCCGCC GCAATGGCGGCGGCGGCGATCTCCCCCACCGCCTCCGGCGCCTACACCGGCTGCGCGACG CCGAGGAAGGTGACGATCCAGAACCTCTCCGGCCGCGACCTGCCCCTCTCCGAGACGCCG CTGGCGAACAGCGGCGCGCTGTTCGGCGCCGGCTACGTGCTCCGCCACGGCACGCACGCC GAGTTCACGACGTGCCTGTGGACGGGGCGCGTGGCGGCGCCGGGGGCGGCGGTGGTGGAG TTCCACGTCGGCCCCGACGGCGGCGCGTGGTACCAGGTGGACAACCGCCAGGCCGGGTCG CCGGTGAAGGTCACCGTGACGCCGCACGGCCGGCCGCTCCAGGGCCACTGCCCCGCCGCC GGGTGCCGCGGCGGCGGCCAGTGCTTCGCCGACGCCGTCCCCGGCGGCAACTGCCACGCC GTCGACGAGCTCAAGATCATCTACTACAGCCCGTGATTTTGGTTTTGGTTTGGTTAAATT TCGTTTGGATTAGTGGGTGATTAGGCCGTCTATTAGTTTTAAGTTAATCATTTGGATCGT CGTTGAGTCCGTCTACTAGCTATATGTAGCTACTGCTAGCTTTAGCTAGTGAGTGTGTCA GTGTGTGACAGTGTCACGTCATCGCATGCATGCATGCATTGATGTCGACATGTCCTCGTA ATGTGCGTCGTGTTTTGTCTTGTCGTGTTGTTGATTAATCCTCGATAATTTGATGTGCAT GCATTGTTTGCAAAAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_14237#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 427
fasta sequence
                              [TCCAGGGCCACTGCCCCGCCGCCGGGTGCCGCGGCGGCGGCCAGTGCTTCGCCGACGCCGTCCCCGGCGGCAACTGCCACGCCGTCGACGAGCTCAAGATCATCTACTACAGCCCGTGATTTTGGTTTTGGTTTGGTTAAATTTCGTTTGGATTAGTGGGTGATTAGGCCGTCTATTAGTTTTAAGTTAATCATTTGGATCGTCGTTGAGTCCGTCTACTAGCTATATGTAGCTACTGCTAGCTTTAGCTAGTGAGTGTGTCAGTGTGTGACAGTGTCACGTCATCGCATGCATGCATGCATTGATGTCGACATGTCCTCGTAATGTGCGTCGTGTTTTGTCTTGTCGTGTTGTTGATTAATCCTCGATAATTTGATGTGCATGCATTGTTTGCAGTGCAGTGTGCCAGTGTTGTTATAGAAAAAAA]

[+] EMBL AU183909             [TCCAGGGCCACTGCCCCGCCGCCGGGTGCCGCGGCGGCGGCCAGTGCTTCGCCGACGCCGTCCCCGGCGGCAACTGCCACGCCGTCGACGAGCTCAAGATCATCTACTACAGCCCGTGATTTTGGTTTTGGTTTGGTTAAATTTCGTTTGGATTAGTGGGTGATTAGGCCGTCTATTAGTTTTAAGTTAATCATTTGGATCGTCGTTGAGTCCGTCTACTAGCTATATGTAGCTACTGCTAGCTTTAGCTAGTGAGTGTGTCAGTGTGTGACAGTGTCACGTCATCGCATGCATGCATGCATTGATGTCGACATGTCCTCGTAATGTGCGTCGTGTTTTGTCTTGTCGTGTTGTTGATTAATCCTCGATAATTTGATGTGCATGCATTGTTTGCAGTGCAGTGTGCCAGTGTTGTTATAGAAAAAAA]


>consensus_14237#1 TCCAGGGCCACTGCCCCGCCGCCGGGTGCCGCGGCGGCGGCCAGTGCTTCGCCGACGCCG TCCCCGGCGGCAACTGCCACGCCGTCGACGAGCTCAAGATCATCTACTACAGCCCGTGAT TTTGGTTTTGGTTTGGTTAAATTTCGTTTGGATTAGTGGGTGATTAGGCCGTCTATTAGT TTTAAGTTAATCATTTGGATCGTCGTTGAGTCCGTCTACTAGCTATATGTAGCTACTGCT AGCTTTAGCTAGTGAGTGTGTCAGTGTGTGACAGTGTCACGTCATCGCATGCATGCATGC ATTGATGTCGACATGTCCTCGTAATGTGCGTCGTGTTTTGTCTTGTCGTGTTGTTGATTA ATCCTCGATAATTTGATGTGCATGCATTGTTTGCAGTGCAGTGTGCCAGTGTTGTTATAG AAAAAAA



consensusID : consensus_14237#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 423
fasta sequence
                              [TCACCGTGACGCCGCACGGCCGGCCGCTCCAGGGCCACTGCCCCGCCGCCGGGTGCCGCGGCGGCGGCCAGTGCTTNGCCGACGCCGTCCCCGGCGGCAACTGCCACGCCGTCGACGAGCTCAAGATCATCTACTACAGCCCGTGATTTTGGTTTTGGTTTGGTTAAATTTCGTTTGGATTAGTGGGTGATTAGGCCGTCTATTAGTTTTAAGTTAATCATTTGGATCGTCGTTGAGTCCGTCTACTAGCTATATGTAGCTACTGCTAGCTTTAGCTAGTGAGTGTGTCAGTGTGTGACAGTGTCACGTCATCGCATGCATGCATGCATTGATGTCGACATGTCCTCGTAATGTGCGTCGTGTTTTGTCTTGTCGTGTTGTTGATTAATCCTCGATAATTTGATGTGCAAAAAAAAAAAAAAA]

[+] EMBL AU183194             [TCACCGTGACGCCGCACGGCCGGCCGCTCCAGGGCCACTGCCCCGCCGCCGGGTGCCGCGGCGGCGGCCAGTGCTTNGCCGACGCCGTCCCCGGCGGCAACTGCCACGCCGTCGACGAGCTCAAGATCATCTACTACAGCCCGTGATTTTGGTTTTGGTTTGGTTAAATTTCGTTTGGATTAGTGGGTGATTAGGCCGTCTATTAGTTTTAAGTTAATCATTTGGATCGTCGTTGAGTCCGTCTACTAGCTATATGTAGCTACTGCTAGCTTTAGCTAGTGAGTGTGTCAGTGTGTGACAGTGTCACGTCATCGCATGCATGCATGCATTGATGTCGACATGTCCTCGTAATGTGCGTCGTGTTTTGTCTTGTCGTGTTGTTGATTAATCCTCGATAATTTGATGTGCAAAAAAAAAAAAAAA]


>consensus_14237#2 TCACCGTGACGCCGCACGGCCGGCCGCTCCAGGGCCACTGCCCCGCCGCCGGGTGCCGCG GCGGCGGCCAGTGCTTNGCCGACGCCGTCCCCGGCGGCAACTGCCACGCCGTCGACGAGC TCAAGATCATCTACTACAGCCCGTGATTTTGGTTTTGGTTTGGTTAAATTTCGTTTGGAT TAGTGGGTGATTAGGCCGTCTATTAGTTTTAAGTTAATCATTTGGATCGTCGTTGAGTCC GTCTACTAGCTATATGTAGCTACTGCTAGCTTTAGCTAGTGAGTGTGTCAGTGTGTGACA GTGTCACGTCATCGCATGCATGCATGCATTGATGTCGACATGTCCTCGTAATGTGCGTCG TGTTTTGTCTTGTCGTGTTGTTGATTAATCCTCGATAATTTGATGTGCAAAAAAAAAAAA AAA



consensusID : consensus_14237#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 350
fasta sequence
                              [GGTGCACAGCAGGCAGCAGGCCAGTGGCAGTCGCGCGACAGCACAGGTCCCACAGGCAGGCAACTGCCACGCCGTGCGACGAGCTGCAAGATCATCTACTACAGCCCGTGATTTTGGTTTTTGGTTTGGGTTAAATTTGCGTTTGGGATTAGTGGGGTAGATTAGGCCGTCTGATTGAGTGTTTGAAGTTAATGCATGTTGCGATGCGTCGTGCGAGTGCCGCCTGACTGAGCTGATATGTAAGCTGACTGCTACGCTTTGAGCTAGTGGAGTGTGGTCACAGTGGTGGTGACAGTGTCACGTTATCGCATGCATGCATGCATTGATGTCGACATGTCCTCGTAATGTGG]

[+] EMBL BI795852             [GGTGCACAGCAGGCAGCAGGCCAGTGGCAGTCGCGCGACAGCACAGGTCCCACAGGCAGGCAACTGCCACGCCGTGCGACGAGCTGCAAGATCATCTACTACAGCCCGTGATTTTGGTTTTTGGTTTGGGTTAAATTTGCGTTTGGGATTAGTGGGGTAGATTAGGCCGTCTGATTGAGTGTTTGAAGTTAATGCATGTTGCGATGCGTCGTGCGAGTGCCGCCTGACTGAGCTGATATGTAAGCTGACTGCTACGCTTTGAGCTAGTGGAGTGTGGTCACAGTGGTGGTGACAGTGTCACGTTATCGCATGCATGCATGCATTGATGTCGACATGTCCTCGTAATGTGG]


>consensus_14237#3 GGTGCACAGCAGGCAGCAGGCCAGTGGCAGTCGCGCGACAGCACAGGTCCCACAGGCAGG CAACTGCCACGCCGTGCGACGAGCTGCAAGATCATCTACTACAGCCCGTGATTTTGGTTT TTGGTTTGGGTTAAATTTGCGTTTGGGATTAGTGGGGTAGATTAGGCCGTCTGATTGAGT GTTTGAAGTTAATGCATGTTGCGATGCGTCGTGCGAGTGCCGCCTGACTGAGCTGATATG TAAGCTGACTGCTACGCTTTGAGCTAGTGGAGTGTGGTCACAGTGGTGGTGACAGTGTCA CGTTATCGCATGCATGCATGCATTGATGTCGACATGTCCTCGTAATGTGG



consensusID : consensus_14237#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 252
fasta sequence
                              [ANCAACCCAACCCAAAGGAAATCCATCCATGGCGATCTNCAAGCTCCAGCTCGCCCTCCTNGCCGCCGCAATGGCGGGGCNNGNATCCTCCCCCACCGCNTCCGGGCNCTACACCGGCTGCGCGACGCCGAGGAAGGTNACGATCCANAACCTCTCCGGCCGCGACCTGCCCCTCTCCGAGANGCCGCTGGGAACAGNGCNGCCTGTTGGNCGNCGGCTACGTGCTCCGCNACGGCACGCACGCNGAGTTNA]

[+] EMBL AU069618             [ANCAACCCAACCCAAAGGAAATCCATCCATGGCGATCTNCAAGCTCCAGCTCGCCCTCCTNGCCGCCGCAATGGCGGGGCNNGNATCCTCCCCCACCGCNTCCGGGCNCTACACCGGCTGCGCGACGCCGAGGAAGGTNACGATCCANAACCTCTCCGGCCGCGACCTGCCCCTCTCCGAGANGCCGCTGGGAACAGNGCNGCCTGTTGGNCGNCGGCTACGTGCTCCGCNACGGCACGCACGCNGAGTTNA]


>consensus_14237#4 ANCAACCCAACCCAAAGGAAATCCATCCATGGCGATCTNCAAGCTCCAGCTCGCCCTCCT NGCCGCCGCAATGGCGGGGCNNGNATCCTCCCCCACCGCNTCCGGGCNCTACACCGGCTG CGCGACGCCGAGGAAGGTNACGATCCANAACCTCTCCGGCCGCGACCTGCCCCTCTCCGA GANGCCGCTGGGAACAGNGCNGCCTGTTGGNCGNCGGCTACGTGCTCCGCNACGGCACGC ACGCNGAGTTNA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14237#1      ------------------------------------------------------------
consensus_14237#2      ------------------------------------------------------------
consensus_14237#3      ------------------------------------------------------------
consensus_14237#0      CAACCCAAAGGAAATCCATCCATGGCGATCTCCAAGCTCCAGCTCGCCCTCCTCGCCGCC 60
consensus_14237#4      ------------------------------------------------------------
                                                                                   

consensus_14237#1      ------------------------------------------------------------
consensus_14237#2      ------------------------------------------------------------
consensus_14237#3      ------------------------------------------------------------
consensus_14237#0      GCAATGGCGGCGGCGGCGATCTCCCCCACCGCCTCCGGCGCCTACACCGGCTGCGCGACG 120
consensus_14237#4      ------------------------------------------------------------
                                                                                   

consensus_14237#1      ------------------------------------------------------------
consensus_14237#2      ------------------------------------------------------------
consensus_14237#3      ------------------------------------------------------------
consensus_14237#0      CCGAGGAAGGTGACGATCCAGAACCTCTCCGGCCGCGACCTGCCCCTCTCCGAGACGCCG 180
consensus_14237#4      ------------------------------------------------------------
                                                                                   

consensus_14237#1      ------------------------------------------------------------
consensus_14237#2      ------------------------------------------------------------
consensus_14237#3      ------------------------------------------------------------
consensus_14237#0      CTGGCGAACAGCGGCGCGCTGTTCGGCGCCGGCTACGTGCTCCGCCACGGCACGCACGCC 240
consensus_14237#4      ------------------------------------------------------------
                                                                                   

consensus_14237#1      ------------------------------------------------------------
consensus_14237#2      ------------------------------------------------------------
consensus_14237#3      ------------------------------------------------------------
consensus_14237#0      GAGTTCACGACGTGCCTGTGGACGGGGCGCGTGGCGGCGCCGGGGGCGGCGGTGGTGGAG 300
consensus_14237#4      ------------------------------------------------------------
                                                                                   

consensus_14237#1      ------------------------------------------------------------
consensus_14237#2      ------------------------------------------------------------
consensus_14237#3      ------------------------------------------------------------
consensus_14237#0      TTCCACGTCGGCCCCGACGGCGGCGCGTGGTACCAGGTGGACAACCGCCAGGCCGGGTCG 360
consensus_14237#4      ------------------------------------------------------------
                                                                                   

consensus_14237#1      -------------------------------------TCCAGGGCCACTGCCCCGCCGCC 23
consensus_14237#2      ----------TCACCGTGACGCCGCACGGCCGGCCGCTCCAGGGCCACTGCCCCGCCGCC 50
consensus_14237#3      ----------------------------------------------GGTGCACAGCAGGC 14
consensus_14237#0      CCGGTGAAGGTCACCGTGACGCCGCACGGCCGGCCGCTCCAGGGCCACTGCCCCGCCGCC 420
consensus_14237#4      ------------------------------------------------------------
                                                                                   

consensus_14237#1      GGGTGCCGCGGCGGCGGCCAGTGCTTCGCCGACGCCGTCCCCGGC-GGCAACTGCCACGC 82
consensus_14237#2      GGGTGCCGCGGCGGCGGCCAGTGCTTNGCCGACGCCGTCCCCGGC-GGCAACTGCCACGC 109
consensus_14237#3      AGCAGGC-CAGTGGCAGTC-GCGCGACAGCACAGGTCCCACAGGCAGGCAACTGCCACGC 72
consensus_14237#0      GGGTGCCGCGGCGGCGGCCAGTGCTTCGCCGACGCCGTCCCCGGC-GGCAACTGCCACGC 479
consensus_14237#4      ------------------------------ANCAACCCAACCCAAAGGAAAT--CCAT-C 27
                                                               *     ** **   ***  *

consensus_14237#1      CGT-CGACGAGCT-CAAGATCATCTACTACAGCCCGTGATTTTGGTTTT-GGTTTGG-TT 138
consensus_14237#2      CGT-CGACGAGCT-CAAGATCATCTACTACAGCCCGTGATTTTGGTTTT-GGTTTGG-TT 165
consensus_14237#3      CGTGCGACGAGCTGCAAGATCATCTACTACAGCCCGTGATTTTGGTTTTTGGTTTGGGTT 132
consensus_14237#0      CGT-CGACGAGCT-CAAGATCATCTACTACAGCCCGTGATTTTGGTTTT-GGTTTGG-TT 535
consensus_14237#4      CAT--GGCGATCTNCAAGCTC--CAGCTCGCCCTCCTNGCCGCCGCAAT-GGCGGGGCNN 82
                       * *  * *** ** **** **  *  **    * * *       *   * **   **   

consensus_14237#1      AAATTT-CGTTTGG-ATTAGTGGGT--GATTAGGCCGTCT-ATTA---GTTTTAAGTTAA 190
consensus_14237#2      AAATTT-CGTTTGG-ATTAGTGGGT--GATTAGGCCGTCT-ATTA---GTTTTAAGTTAA 217
consensus_14237#3      AAATTTGCGTTTGGGATTAGTGGGGTAGATTAGGCCGTCTGATTGAGTGTTTGAAGTTAA 192
consensus_14237#0      AAATTT-CGTTTGG-ATTAGTGGGT--GATTAGGCCGTCT-ATTA---GTTTTAAGTTAA 587
consensus_14237#4      GNATCCTCCCCCACCGCNTCCGGGC---NCTACACCGGCT--------GCGCGACGCCGA 131
                         **   *             ***      **  *** **        *    * *   *

consensus_14237#1      T---CATTTGGAT-CGTCGT-TGAGT-CCGTCT-ACT-AGCT-ATATGTA-GCT-ACTGC 239
consensus_14237#2      T---CATTTGGAT-CGTCGT-TGAGT-CCGTCT-ACT-AGCT-ATATGTA-GCT-ACTGC 266
consensus_14237#3      TGCATGTTGCGATGCGTCGTGCGAGTGCCGCCTGACTGAGCTGATATGTAAGCTGACTGC 252
consensus_14237#0      T---CATTTGGAT-CGTCGT-TGAGT-CCGTCT-ACT-AGCT-ATATGTA-GCT-ACTGC 636
consensus_14237#4      GGAAGGTNACGATCCANAAC--CTCTCCGGCCGCGACCTGCCCCTCTCCGAGAN-GCCGC 188
                             *   *** *          * * * *       **   * *    *    * **

consensus_14237#1      TA-GCTTT-AGCTAGTG-AGTGTG-TCAGTGTG----TGACAGTGTCACGTCATCGCATG 291
consensus_14237#2      TA-GCTTT-AGCTAGTG-AGTGTG-TCAGTGTG----TGACAGTGTCACGTCATCGCATG 318
consensus_14237#3      TACGCTTTGAGCTAGTGGAGTGTGGTCACAGTGGTGGTGACAGTGTCACGTTATCGCATG 312
consensus_14237#0      TA-GCTTT-AGCTAGTG-AGTGTG-TCAGTGTG----TGACAGTGTCACGTCATCGCATG 688
consensus_14237#4      TG------GGAACAGNGCNGCCTGTTGGNCGNC--GGCTAC-GTGCTCCGCNACGGCACG 239
                       *            ** *  *  ** *    *        ** ***   **  *  *** *

consensus_14237#1      CATGCATGCATTGATGTCGACATGTCCTCGTAATGTGCGTCGTGTTTTGTCTTGTCGTGT 351
consensus_14237#2      CATGCATGCATTGATGTCGACATGTCCTCGTAATGTGCGTCGTGTTTTGTCTTGTCGTGT 378
consensus_14237#3      CATGCATGCATTGATGTCGACATGTCCTCGTAATGTGG---------------------- 350
consensus_14237#0      CATGCATGCATTGATGTCGACATGTCCTCGTAATGTGCGTCGTGTTTTGTCTTGTCGTGT 748
consensus_14237#4      CACGCN-GAGTTNA---------------------------------------------- 252
                       ** **  *  ** *                                              

consensus_14237#1      TGTTGATTAATCCTCGATAATTTGATGTGCATGCATTGTTTGCAGTGCAGTGTGCCAGTG 411
consensus_14237#2      TGTTGATTAATCCTCGATAATTTGATGTGCAAAAAAAAAAAAAAA--------------- 423
consensus_14237#3      ------------------------------------------------------------
consensus_14237#0      TGTTGATTAATCCTCGATAATTTGATGTGCATGCATTGTTTGCAAAAAAAAAAAAAAAAA 808
consensus_14237#4      ------------------------------------------------------------
                                                                                   

consensus_14237#1      TTGTTATAGAAAAAAA 427
consensus_14237#2      ----------------
consensus_14237#3      ----------------
consensus_14237#0      AAAAAAAAA------- 817
consensus_14237#4      ----------------
                                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)