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Oryza sativa
cluster # 1424 cluster # 1424       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1424#0 length = 1195 sequences # 2  

consensusID : consensus_1424#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1195
fasta sequence
                              [AATGGAAGAGGAGTTTGAGAAGATTGTTGGAGTGAGTGGGCTGCTGTGGGGTTTTGTTGTTGCTTTCATGTTATTCAATATCAACGGATCGAACTTGTACTTTTGGATAGCCATTCTTCCTGTTACTCTTGTTCTTCTAGTTGGCGCAAAGCTGCAATACGTCATAGCAACTTTAACAGCAGAGGGTGCAAAGATGAATGCATACGGACCAAGGATAAAGCCACGGGATGATCTCTTTTGGTTCAAGAAACCAGAATTTCTCCTGTGGCTGATCCATTTCATTCTCTTTCAGAACTCATTTGAATTGGCTTCTTTCTTCTGGTTCTGGTGGCAATTTGGTTATGATTCATGCTTCATCAAGAACCACCTGATAGTATATTGCCGCCTCATATTGGGGTTTGCCGGGCAGTTCCTGTGTAGTTACAGCACATTGCCTGTTTATGCCCTTGTCACTCAGATGGGGTCAAAGTACAAGGCTGCCCTGATCCCGCGAAGGATCAGAGAGACGATGCATGGGTGGGGGAAAGACGCGAGGAGGAGGAGGAAGAAGCACCGCGGCGGCGACGACTCCACCATCCGCACGGAGACCAGCACCGTCTGCTCCCTCGACGACGACGACGGCGACGACGAGCACGGCCAGTTCGTCGAGACCACGCCGTCGCGGCCGTACCTGAAGATCCAGCTGCAGCCGCTCCGCAGCGGCGGTGGCAGCGCTAGGCCCGGCACGCCGTGCCACCCCGGCGTCGTCGGGCTCCCGCC-GTTGCACAGCGTGTCGACGCAGGGCAGCTCGCACCCGATGCTGCAGCGGCAGGCCTCGTCGCTGTCGGCGCCGTCGTCGCCGTCGCCCCGCGGCGGCGGCATGACGAGGTCGATGTCGATGCCCGGGTTCGCCTCGCTGACGCGGACGCCCGGAGGCTCCTGCCCCGGCACCGGCGCCGGCACGCCGACACGCCTGAGCGACGCGCGTAACTGAAGCAAAGCACACACATACACACACATACATAGCAGAGCTATTTGTGAGATAGATGTAATTTAACTTTAGGAAGGGAGTTCGAATCGGAGGAATTTTGGAGAATTTTAGAGGATTTCAACTAAATCCTGTAAAATTCGTTCCAAAGGAGTCCTGAGTGTATTGGACTTTGTACATGGATCAACCAATGGTAATTGAAGCGTCATTACTGGAGAACCTTCTTCC]

[+] EMBL AK111773             [AATGGAAGAGGAGTTTGAGAAGATTGTTGGAGTGAGTGGGCTGCTGTGGGGTTTTGTTGTTGCTTTCATGTTATTCAATATCAACGGATCGAACTTGTACTTTTGGATAGCCATTCTTCCTGTTACTCTTGTTCTTCTAGTTGGCGCAAAGCTGCAATACGTCATAGCAACTTTAACAGCAGAGGGTGCAAAGATGAATGCATACGGACCAAGGATAAAGCCACGGGATGATCTCTTTTGGTTCAAGAAACCAGAATTTCTCCTGTGGCTGATCCATTTCATTCTCTTTCAGAACTCATTTGAATTGGCTTCTTTCTTCTGGTTCTGGTGGCAATTTGGTTATGATTCATGCTTCATCAAGAACCACCTGATAGTATATTGCCGCCTCATATTGGGGTTTGCCGGGCAGTTCCTGTGTAGTTACAGCACATTGCCTGTTTATGCCCTTGTCACTCAGATGGGGTCAAAGTACAAGGCTGCCCTGATCCCGCGAAGGATCAGAGAGACGATGCATGGGTGGGGGAAAGACGCGAGGAGGAGGAGGAAGAAGCACCGCGGCGGCGACGACTCCACCATCCGCACGGAGACCAGCACCGTCTGCTCCCTCGACGACGACGACGGCGACGACGAGCACGGCCAGTTCGTCGAGACCACGCCGTCGCGGCCGTACCTGAAGATCCAGCTGCAGCCGCTCCGCAGCGGCGGTGGCAGCGCTAGGCCCGGCACGCCGTGCCACCCCGGCGTCGTCGGGCTCCCGCC GTTGCACAGCGTGTCGACGCAGGGCAGCTCGCACCCGATGCTGCAGCGGCAGGCCTCGTCGCTGTCGGCGCCGTCGTCGCCGTCGCCCCGCGGCGGCGGCATGACGAGGTCGATGTCGATGCCCGGGTTCGCCTCGCTGACGCGGACGCCCGGAGGCTCCTGCCCCGGCACCGGCGCCGGCACGCCGACACGCCTGAGCGACGCGCGTAACTGAAGCAAAGCACACACATACACACACATACATAGCAGAGCTATTTGTGAGATAGATGTAATTTAACTTTAGGAAGGGAGTTCGAATCGGAGGAATTTTGGAGAATTTTAGAGGATTTCAACTAAATCCTGTAAAATTCGTTCCAAAGGAGTCCTGAGTGTATTGGACTTTGTACATGGATCAACCAATGGTAATTGAAGCGTCATTACTGGAGAACCTTCTTCC]
[+] EMBL BI812122             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CCTGAAGATCCAGCT CA CCGCTCCGCTGC GCGGT GCAGCGCTAGGCCCGGCACGCCGTGCCACCCCGGCGTCGTCGGGCTCCCGCCAGTTGCACAGCGCGTCGACGCA GGCAGCTCGCACCCGATGCTGCAGCGGCAGCCCTCGTCGCTGTCGGCGCCGTCGTCGCCGTCGCCCCGCGGCGGCGGCATGACGAGGTCGATGTCGATGCCCGGGTTCGCCTCGCTGACGCGGACGCCCGGAGGCTCCTGCCCCGGCACCGGCGCCGGCACGCCGACACGCCTGAGCGACGCGCGTAACTGAAGCCAAGCACACAAATACACACACATACATAGCTGAGCTATTTGTGAGATAGATGTAATTTAACTTTAGGAAGGGAGTTCGAATCGGAGGAATTTTGGAGAATTTTAGAGGATTTCAACTAAATCCTGTAAAATTCGTTCCAAAGGAGTCCTGAGTGTATTGGACTTTGTACATGGATCAACCCATGGTAATTGAAGCGTCATTACTGGAGAAaaaaaaaa ]


>consensus_1424#0 AATGGAAGAGGAGTTTGAGAAGATTGTTGGAGTGAGTGGGCTGCTGTGGGGTTTTGTTGT TGCTTTCATGTTATTCAATATCAACGGATCGAACTTGTACTTTTGGATAGCCATTCTTCC TGTTACTCTTGTTCTTCTAGTTGGCGCAAAGCTGCAATACGTCATAGCAACTTTAACAGC AGAGGGTGCAAAGATGAATGCATACGGACCAAGGATAAAGCCACGGGATGATCTCTTTTG GTTCAAGAAACCAGAATTTCTCCTGTGGCTGATCCATTTCATTCTCTTTCAGAACTCATT TGAATTGGCTTCTTTCTTCTGGTTCTGGTGGCAATTTGGTTATGATTCATGCTTCATCAA GAACCACCTGATAGTATATTGCCGCCTCATATTGGGGTTTGCCGGGCAGTTCCTGTGTAG TTACAGCACATTGCCTGTTTATGCCCTTGTCACTCAGATGGGGTCAAAGTACAAGGCTGC CCTGATCCCGCGAAGGATCAGAGAGACGATGCATGGGTGGGGGAAAGACGCGAGGAGGAG GAGGAAGAAGCACCGCGGCGGCGACGACTCCACCATCCGCACGGAGACCAGCACCGTCTG CTCCCTCGACGACGACGACGGCGACGACGAGCACGGCCAGTTCGTCGAGACCACGCCGTC GCGGCCGTACCTGAAGATCCAGCTGCAGCCGCTCCGCAGCGGCGGTGGCAGCGCTAGGCC CGGCACGCCGTGCCACCCCGGCGTCGTCGGGCTCCCGCCGTTGCACAGCGTGTCGACGCA GGGCAGCTCGCACCCGATGCTGCAGCGGCAGGCCTCGTCGCTGTCGGCGCCGTCGTCGCC GTCGCCCCGCGGCGGCGGCATGACGAGGTCGATGTCGATGCCCGGGTTCGCCTCGCTGAC GCGGACGCCCGGAGGCTCCTGCCCCGGCACCGGCGCCGGCACGCCGACACGCCTGAGCGA CGCGCGTAACTGAAGCAAAGCACACACATACACACACATACATAGCAGAGCTATTTGTGA GATAGATGTAATTTAACTTTAGGAAGGGAGTTCGAATCGGAGGAATTTTGGAGAATTTTA GAGGATTTCAACTAAATCCTGTAAAATTCGTTCCAAAGGAGTCCTGAGTGTATTGGACTT TGTACATGGATCAACCAATGGTAATTGAAGCGTCATTACTGGAGAACCTTCTTCC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)