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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14242#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 2528 fasta sequence
[TGCCTTTTGCTGTGTGCGCTGTGTTGGTGGGCTGTGACGAGGGCGCGAATGGCCGGCGCCTCCTCCACCTCCGCGTCGGCGCGGGCCACGCCACCGGCTCGCTCATTGCCTCCGCTCGGCGCGTCGGGGAGCCAGCAGGAGCCGGCTGCCACTGCGAGCCACCACGCCGCCGGCGCCGGCGCCTCGTCCAGGCCGATGCGGCGCAAGGGAAGGAAGCAGAAGCAGCTGTGGCCGAAGACGGTGCTTCGGAAATGGCTCAACATCAGGTCGCCGGAATCCGACTTCAGCGCCGACGAGGGCGAAGCCACCGGCGACGACGACACCGATAGCGAGTTCGAGTACGAAGAAATGTGCCATTGGGAGCGCCAACTATATGATGAGGAGAGGAGACTGCGTGGTTTGGGCGCTGAGACAATTGATAGCCAAATGGAGGGTGCTCCCTACAAGCTTAATAGAAGGCGCAAGTCAGAGACCCTTCGTGCCCAATATATCGACATTAAGGAACTCAGGGTCTGCGTAGGAACATGGAATGTTGCAGGAAGACTTCCACCTGATGACTTGGATATTCAAGATTGGTTGGATAT-GGAGGAGCCAGCTGATATTTATGTTCTTGGATTTCAAGAAATTGTTCCATTAAATGCTGGGAATATA-TTTGGTGCTGAAGACAACCGTCCTGTCGCAATGTGGGAACATATCATTCGTGAAACATTGAATAAGATTAGTCCTGATAAACCAAAATATAAATGTCACAGTGATCCTCCTTCTCCATCAAGGTTCAAGCCTTCTGACGATGTGGAAGATGAACTTGTTAGTGAATCTGACAGCGAAAGTGGC-GGGGAAGTGCACCCATGGAATGAACAAGATTTTACCGTTGATGATGACAGTGTTCATAGTAATAAATATGAGCACTCTACTTCTGGTCCTACTGAAACTACCGTAAATGGAAACAACTTCAGCAGGGTGCCTTCAATGAAGATTTTCGATAGATCACACAACTTAAGTTTTAAAGACTATGTATCTAGTTTGGAAGAGCCAATCCATCAAAAAATGTTAACTAAAACACTCAGCTACTCAGAGAGGCTTGGAATGATTTGGCCTGAACAACCGTTGGATATATTGGCCCAGCGTCTTCCAGACAGCACGAAACCATTTATTTCAGAGAAGGCACTGAGGTCATGTTTGTCTTTCAAATCAGCACATGGAGATTCCAATGCTTTTCCAGATGATTGTTTAGTTCATGATTTTAACATC-AAAGTGCACTAGTCAAAACGAAAAGACCATACTTCGTAAGGATAATAAGCAAGCAGATGGTTGGAGTTTTTATTTCAATATGGGTACGAAGAAGCCTGCGGAAGCATATTCAAAATTTGAAAGTATCAACCGTAGGTGTCGGTGCTATGGGTTATATTGGTAATAAGGGATCAATAGCAGTAAGCATGTCCATTTATCAAACACTCTTTTGCTTTATATGTTGCCACCTGACCTCTGGAGAAAAGGATGGAGATGAACTGAAAAGGAATGCTGATGTGCAAGAAATCCATCGAAGGACAATATTTAATCCGGTTTCCAGAGTTAGCATGCCTAAGACTATATATGACCATGAAAGGATAATATGGTTAGGAGATCTCAATTATAGGATCAACTTATCATATGAAAAAACACATGAATTCATATCCATGAAGGACTGGAATGGTTTGTTCCAGAATGACCAGCTAAAACGAGAATTTAAGAAAGGGCATTTATTTGATGGGTGGACTGAAGGAGTTATCAGCTTTCCCCCGACATACAAGTACAAGG-TTAACTCAGAG-AAATACACGAGTGAT-GAGCCAAAATCTGGAAGGAGAACACCTGCCTGGTGTGACCGAATTCTTTCCTTTGGCAAGGGAATGAGGCTGCAGGCCTACAGGACAGTTGATATCAGGCTAT-CCGATCACCG-CCCTGTGACAGCTGTGTACACTTCCGATG-TTGAGGTTTTCTGTCCCAAAAAGTTGCAGAGAGCTCTTACCTTCACCGATGCAGAGGTTGAGGACCAATTCTCATTTGAGGAAGAGAGCACTTCTGGAATCTTTAGCTTTTGACTAGGATGAGCACCAAGTACATCGGGGAATTTATGTAATGAATTGCGATGCTTTTCTGAAGTCTCCGAGGAATTATTGTTCTCACATTTCATCCGCTATTTCCAGTATCCATCCTACTCGCAATTAGCATCGGCCATCATGTACATTCCTTCCACACTCTGTATTTGGAGACCAGGGCGTGGCATG--TTTTTTTTTTTTTAGCTTTACTCTTGTGTGCCTCTTCTGACTATGAGGAGTTTGTACGCAATAATGGCCTCCGTGACGATCTGATTTTGTAATTAAACATTTGAATACTGTAGATTCCTAGGCAGACCGATTGTGCAGTTCAAAAAAAATTTGACCTATACTCCTATGTGCAGTTTTGAATCTATTGCTACCAGTAAGGAAGCAAACCAGTGTACATTAATTAGTACTCTTTCCCGTCTCCCTAATATAAGGGATTTTTGATAT]
[+] EMBL AK101741 [TGCCTTTTGCTGTGTGCGCTGTGTTGGTGGGCTGTGACGAGGGCGCGAATGGCCGGCGCCTCCTCCACCTCCGCGTCGGCGCGGGCCACGCCACCGGCTCGCTCATTGCCTCCGCTCGGCGCGTCGGGGAGCCAGCAGGAGCCGGCTGCCACTGCGAGCCACCACGCCGCCGGCGCCGGCGCCTCGTCCAGGCCGATGCGGCGCAAGGGAAGGAAGCAGAAGCAGCTGTGGCCGAAGACGGTGCTTCGGAAATGGCTCAACATCAGGTCGCCGGAATCCGACTTCAGCGCCGACGAGGGCGAAGCCACCGGCGACGACGACACCGATAGCGAGTTCGAGTACGAAGAAATGTGCCATTGGGAGCGCCAACTATATGATGAGGAGAGGAGACTGCGTGGTTTGGGCGCTGAGACAATTGATAGCCAAATGGAGGGTGCTCCCTACAAGCTTAATAGAAGGCGCAAGTCAGAGACCCTTCGTGCCCAATATATCGACATTAAGGAACTCAGGGTCTGCGTAGGAACATGGAATGTTGCAGGAAGACTTCCACCTGATGACTTGGATATTCAAGATTGGTTGGATAT GGAGGAGCCGGCTGATATTTATGTTCTTGGATTTCAAGAAATTGTTCCATTAAATGCTGGGAATATA TTTGGTGCTGAAGACAACCGTCCTGTCGCAATGTGGGAACATATCATTCGTGAAACATTGAATAAGATTAGTCCTGATAAACCAAAATATAAATGTCACAGTGATCCTCCTTCTCCATCAAGGTTCAAGCCTTCTGACGATGTGGAAGATGAACTTGTTAGTGAATCTGACAGCGAAAGTGGC GGGGAAGTGCACCCATGGAATGAACAAGATTTTACCGTTGATGATGACAGTGTTCATAGTAATAAATATGAGCACTCTACTTCTGGTCCTACTGAAACTACCGTAAATGGAAACAACTTCAGCAGGGTGCCTTCAATGAAGATTTTCGATAGATCACACAACTTAAGTTTTAAAGACTATGTATCTAGTTTGGAAGAGCCAATCCATCAAAAAATGTTAACTAAAACACTCAGCTACTCAGAGAGGCTTGGAATGATTTGGCCTGAACAACCGTTGGATATATTGGCCCAGCGTCTTCCAGACAGCACGAAACCATTTATTTCAGAGAAGGCACTGAGGTCATGTTTGTCTTTCAAATCAGCACATGGAGATTCCAATGCTTTTCCAGATGATTGTTTAGTTCATGATTTTAACATC AAAGTGCACTAGTCAAAACGAAAAGACCATACTTCGTAAGGATAATAAGCAAGCAGATGGTTGGAGTTTTTATTTCAATATGGGTACGAAGAAGCCTGCGGAAGCATATTCAAAATTTGAAAGTATCAACCGTAGGTGTCGGTGCTATGGGTTATATTGGTAATAAGGGATCAATAGCAGTAAGCATGTCCATTTATCAAACACTCTTTTGCTTTATATGTTGCCACCTGACCTCTGGAGAAAAGGATGGAGATGAACTGAAAAGGAATGCTGATGTGCAAGAAATCCATCGAAGGACAATATTTAATCCGGTTTCCAGAGTTAGCATGCCTAAGACTATATATGACCATGAAAGGATAATATGGTTAGGAGATCTCAATTATAGGATCAACTTATCATATGAAAAAACACATGAATTCATATCCATGAAGGACTGGAATGGTTTGTTCCAGAATGACCAGCTAAAACGAGAATTTAAGAAAGGGTATTTATTTGATGGGTGGACTGAAGGAGTTATCAGCTTTCCCCCGACATACAAGTACAAGG TTAACTCAGAG AAATACACGAGTGAT GAGCCAAAATCTGGAAGGAGAACACCTGCCTGGTGTGACCGAATTCTTTCCTTTGGCAAGGGAATGAGGCTGCAGGCCTACAGGACAGTTGATATCAGGCTAT CCGATCACCG CCCTGTGACAGCTGTGTACACTTCCGATG TTGAGGTTTTCTGTCCCAAAAAGTTGCAGAGAGCTCTTACCTTCACCGATGCAGAGGTTGAGGACCAATTCTCATTTGAGGAAGAGAGCACTTCTGGAATCTTTAGCTTTTGACTAGGATGAGCACCAAGTACATCGGGGAATTTATGTAATGAATTGCGATGCTTTTCTGAAGTCTCCGAGGAATTATTGTTCTCACATTTCATCCGCTATTTCCAGTATCCATCCTACTCGCAATTAGCATCGGCCATCATGTACATTCCTTCCACACTCTGTATTTGGAGACCAGGGCGTGGCATG TTTTTTTTTTTTTAGCTTTACTCTTGTGTGCCTCTTCTGACTATGAGGAGTTTGTACGCAATAATGGCCTCCGTGACGATCTGATTTTGTAATTAAACATTTGAATACTGTAG ]
[+] EMBL AK101771 [ ACGAGGGCGCGAATGGCCGGCGCCTCCTCCACCTCCGCGTCGGCGCGGGCCACGCCACCGGCTCGCTCATTGCCTCCGCTCGGCGCGTCGGGGAGCCAGCAGGAGCCGGCTGCCACTGCGAGCCACCACGCCGCCGGCGCCGGCGCCTCGTCCAGGCCGATGCGGCGCAAGGGAAGGAAGCAGAAGCAGCTGTGGCCGAAGACGGTGCTTCGGAAATGGCTCAACATCAGGTCGCCGGAATCCGACTTCAGCGCCGACGAGGGCGAAGCCACCGGCGACGACGACACCGATAGCGAGTTCGAGTACGAAGAAATGTGCCATTGGGAGCGCCAACTATATGATGAGGAGAGGAGACTGCGTGGTTTGGGCGCTGAGACAATTGATAGCCAAATGGAGGGTGCTCCCTACAAGCTTAATAGAAGGCGCAAGTCAGAGACCCTTCGTGCCCAATATATCGACATTAAGGAACTCAGGGTCTGCGTAGGAACATGGAATGTTGCAGGAAGACTTCCACCTGATGACTTGGATATTCAAGATTGGTTGGATAT GGAGGAGCCAGCTGATATTTATGTTCTTGGATTTCAAGAAATTGTTCCATTAAATGCTGGGAATATA TTTGGTGCTGAAGACAACCGTCCTGTCGCAATGTGGGAACATATCATTCGTGAAACATTGAATAAGATTAGTCCTGATAAACCAAAATATAAATGTCACAGTGATCCTCCTTCTCCATCAAGGTTCAAGCCTTCTGACGATGTGGAAGATGAACTTGTTAGTGAATCTGACAGCGAAAGTGGC GGGGAAGTGCACCCATGGAATGAACAAGATTTTACCGTTGATGATGACAGTGTTCATAGTAATAAATATGAGCACTCTACTTCTGGTCCTACTGAAACTACCGTAAATGGAAACAACTTCAGCAGGGTGCCTTCAATGAAGATTTTCGATAGATCACACAACTTAAGTTTTAAAGACTATGTATCTAGTTTGGAAGAGCCAATCCATCAAAAAATGTTAACTAAAACACTCAGCTACTCAGAGAGGCTTGGAATGATTTGGCCTGAACAACCGTTGGATATATTGGCCCAGCGTCTTCCAGACAGCACGAAACCATTTATTTCAGAGAAGGCACTGAGGTCATGTTTGTCTTTCAAATCAGCACATGGAGATTCCAATGCTTTTCCAGATGATTGTTTAGTTCATGATTTTAACATCAAAAGTGCACTAGTCAAAACGAAAAGACCATGCTTCGTAAGGATAATAAGCAAGCAGATGGTTGGAGTTTTTATTTCAATATGGGTACGAAGAAGCATGCGGAAGCATATTCAAAATTTGAGAGTATCAACCGTAGGTGTCGGTGCTATGGGTTATATTGGTAATAAGGGATCAATAGCAGTAAGCATGTCCATTTATCAAACACTCTTTTGCTTTATATGTTGCCACCTGACCTCTGGAGAAAAG ]
[+] EMBL CB637907 [ GCGAATGGCCGGCGCCTCCTCCACCTCCGCGTCGGCGCGGGCCACGCCACCGGCTCGCTCATTGCCTCCGCTCGGCGCGTCGGGGAGCCAGCAGGAGCCGGCTGCCACTGCGAGCCACCACGCCGCCGGCGCCGGCGCCTCGTCCAGGCCGATGCGGCGCAAGGGAAGGAAGCATAAGCAGCTGTGGCCGAAGACGGTGCTTCGGAAATGGCTCAACATCAGGTCGCCGGAATCCGACTTCAGCGCCGACGAGGGCGAAGCCACCGGCGACGACGACACCGATAGCGAGTTCGAGTACGAAGAAATGTGCCATTGGGAGCGCCAACTATATGATGAGGAGAGGAGACTGCGTGGTTTGGGCGCTGAGACAATTGATAGCCAAATGGAGGGTGCTCCCTACAAGCTTAATAGAAGGCGCAAGTCAGAGACCCTTCGTGCCCAATAT ]
[+] EMBL CF306295 [ CCACGCCACCGGCTCGCTCATTGCCTCCGCTCGGCGCGTCGGGGAGCCAGCAGGAGCCGGCTGCCACTGCGAGCCACCACGCCGCCGGCGCCGGCGCCTCGTCCAGGCCGATGCGGCGCAAGGGAAGGAAGCAGAAGCAGCTGTGGCCGAAGACGGTGCTTCGGAAATGGCTCAACATCAGGTCGCCGGAATCCGACTTCAGCGCCGACGAGGGCGAAGCCACCGGCGACGACGACACCGATAGCGAGTTCGAGTACGAAGAAATGTGCCATTGGGAGCGCCAACTATATGATGAGGAGAGGAGACTGCGTGGTTTGGGCGCTGAGACAATTGATAGCCAAATGGAGGGTGCTCCCTACAAGCTTAATAGAAGGCGCAAGTCAGAGACCCTTCGTGCCCAATATATCGACATTAAGGAACTCAGGGTCTGCGTAGGAACATGGAATGTTGCAGGAAGACTTCCACCTGATGACTTGGATATTCAAGATTGGTTGGATNTGGGAGGAGCCAGCTGATATTTATGTTCTTGGATTTCAAGAAATTGTTCCATTAAATGCTGGGAATATATTTTGGTGCTGAAGACAACCGTCCTGTCGCAATGTGGGAACATATCATTCGT ]
[+] EMBL CF323583 [ GCAAGGGAAGGAAGCAGAAGCAGCTGTGGCCGAAGACGGTGCTTCGGAAATGGCTCAACATCAGGTCGCCGGAATCCGACTTCAGCGCCGACGAGGGCGAAGCCACCGGCGACGACGACACCGATAGCGAGTTCGAGTACGAAGAAATGTGCCATTGGGAGCGCCAACTATATGATGAGGAGAGGAGACTGCGTGGTTTGGGCGCTGAGACAATTGATAGCCAAATGGAGGGTGCTCCCTACAAGCTTAATAGAAGGCGCAAGTCAGAGACCCTTCGTGCCCAATATATCGACATTAAGGAACTCAGGGTCTGCGTAGGAACATGGAATGTTGCAGGAAGACTTCCACCTGATGACTTGGATATTCAAGATTGGTTGGATAT GGAGGAGCCAGCTGATATTTATGTTC ]
[+] EMBL CF306754 [ AGAAGCAGCTGTGGCCGAAGACGGTGCTTCGGAAATGGCTCAACATCAGGTCGCCGGAATCCGACTTCAGCGCCGACGAGGGCGAAGCCACCGGCGACGACGACACCGATAGCGAGTTCGAGTACGAAGAAATGTGCCATTGGGAGCGCCAACTATATGATGAGGAGAGGAGACTGCGTGGTTTGGGCGCTGAGACAATTGATAGCCAAATGGAGGGTGCTCCCTACAAGCTTAATAGAAGGCGCAAGTCAGAGACCCTTCGTGCCCAATATATCGACATTAAGGAACTCAGGGTCTGCGTAGGAACATGGAATGTTGCAGGAAGACTTCCACCTGATGACTTGGATATTCAAGATTGGTTGGATAT GGAGGAGCCAGCTGATATTTATGTTCTTGGATTTCAAGAAATTGTTCCATTAAATGCTGGGAATATA TTTGGTGCTGAAGACAACCGTCCTGTCGCAATGTGGGAACATATCATTCGTGAAACATTGAATAAGATTAGTCCTGATAAACCAAAATATAAATGTCACAGTGATCCTCCTTCTCCATCAAGGTTCAAGCCTTCTGACGATGTGGAAGATGAACTTGTTAGTGAATCTGACAGCGAAAGTGGCGGGGGAAGTGCACCCATGGAATGAACAAGATTNTACCGTTGATGATGACAGTGTTCATAGTAATAAATATGAGCACTCTACTTCTGGTCCTACTGAAACTACCGTAAATGGA ]
[+] EMBL CF303712 [ ATATATCGACATTAAGGAACTCAGGGTCTGCGTAGGAACATGGAATGTTGCAGGAAGACTTCCACCTGATGACTTGGATATTCAAGATTGGTTGGATAT GGAGGAGCCAGCTGATATTTATGTTCTTGGATTTCAAGAAATTGTTCCATTAAATGCTGGGAATATA TTTGGTGCTGAAGACAACCGTCCTGTCGCAATGTGGGAACATATCATTCGTGAAACATTGAATAAGATTAGTCCTGATAAACCAAAATATAAATGTCACAGTGATCCTCCTTCTCCATCAAGGTTCAAGCCTTCTGACGATGTGGAAGATGAACTTGTTAGTGAATCTGACAGCGAAAGTGGC GGGGAAGTGCACCCATGGAATGAACAAGATTTTACCGTTGATGATGACAGTGTTCATAGTAATAAATATGAGCACTCTACTTCTGGTCCTACTGAAACTACCGTAAATGGAAACAACTTCAGCAGGGTGCCTTCAATGAAGATTTTCGATAGATCACACAACTTAAGTTTTAAAGACTATGTATCTAGTTTGGAAGAGCCAATCCATCAAAAAATGTTAACTAAAACACTCAGCTACTCAGAGAGGCTTGGAATGATTTGGCCTGAACAACCGTTGG ]
[+] EMBL AU088599 [ ATAATATGGTTAGGAGATCTCAATTATAGGATCAACTTATCATATGAAAAAACACATGAATTCATATCCATGAAGGACTGGAATGGTTTGTTCCAGAATGACCAGCTAAAACGAGAATTTAAGAAAGGGCATTTATTTGATGGGTGGACTGAAGGAGTTATCAGCTTTCCCCCGACATACAAGTACAAGG TTAACTCAGAG AAATACACGAGTGAT GAGCCAAAATCTGGAAGGAGAACACCTGCCTGGTGTGACCGAATTCTTTCCTTTGGCAAGGGAATGAGGCTGCAGG CTACAGGACAGTTGATATCAGGCTAT CCGATCACCG CCCTGTGACAGCTGTGTACACTTCCGATG TTGAGG TTTCTGTCCCAAAAAGTTGCAGAGAG ]
[+] EMBL C27831 [ TAATATGGTTAGGAGATCTCAATTATAGGATCAACTTATCATATGAAAAAACACATGAATTCATATCCATGAAGGACTGGAATGGTTTGTTCCAGAATGACCAGCTAAAACGAGAATTTAAGAAAGGGCATTTATTTGATGGGTGGACTGAAGGAGTTATCAGCTTTCCCCCGACATACAAGTACAAGG TTAACTCAGAG ACATACACGAGTGAT GAGCCAAAATCTGGAAGGAGAACACCTGCCTGGTGTGACCGAATTCTTTCCTTTGGCAAGGGAATGAGGCTGCAGGCCTACAGGACAGTTGATATCAGGCTATCCCGATCACCGNCCTTGTGACAGCTGTGTACACT ]
[+] EMBL CF314988 [ TATCCATGAAGGACTGGAATGGTTTGTTCCAGAATGACCAGCTAAAACGAGAATTTAAGAAAGGGCATTTATTTGATGGGTGGACTGAAGGAGTTATCAGCTTTCCCCCGACATACAAGTACAAGG TTAACTCAGAG AAATACACGAGTGAT GAGCCAAAATCTGGAAGGAGAACACCTGCCTGGTGTGACCGAATTCTTTCCTTTGGCAAGGGAATGAGGCTGCAGGCCTACAGGACAGTTGATATCAGGCTAT CCGATCACCG CCCTGTGACAGCTGTGTACACTTCCGATGTTTGAGGTTTTCTGTCCCAAAAAGTTGCAGAGAGCTCTTACCTTCACCGATGCAGAGGTTGAGGACCAATTCTCATTTGAGGAAGAGAGCACTTCTGGAATCTTTAGCTTTTGACTAGGATGAGCACCAAGTACATCGGGGAATTTATGTAATGAATTGCGATGCTTTTCTGAAGTCTCCGAGGAATTATTGTTCTCACATTTCATCCGCTATTTCCAGTATCCATCCTACTCGCAATTAGCATCGGCCATCATGTACATTCCTTCC CACT ]
[+] EMBL AU069284 [ AAGTACCAGGTTTAACTCAGGGNAATTACACGANTGATGGACCCAAAATCTGGAAGGAGNACACCTGCCTGGTGTGACCGAATTCTTTCCTTTGGCAAGGGAATGAAGCTGCAGGCCTACAGGACAGTTGATATCAGGCTAT CCGATCACCG CCCTGTGACAGCTGTGTACACTTCCGATG TTGAGGTTTTCTGTCCCAAAAAGTTGCAGAGAGCTCTTACCTTCACCGATGCAGAGGTTGAGGACCAATTCTCATTTGAGGAAGAGAGCACTTCTGGAATCTTTAGCTTTTGACTAGGATGAGCACCAAGTACATCGGGGAATTTATGTAATGAATTGCGATGCTTTTCTGAAGTCTCCGAGGAATTATTGTTCTCACATTTCATCCGCTATTTCCAGTATCCATCCTACTCGCAATTAGCATCGGCCATCATGTAaa ]
[-] EMBL CF314989 [ AAGGGAATGAGGCTGCAGGCCTACAGGACAGTTGATATCAGGCTAT CCGATCACCG CCCTGTGACAGCTGTGTACACTTCCGATG TTGAGGTTTTCTGTCCCAAAAAGTTGCAGAGAGCTCTTACCTTCACCGATGCAGAGGTTGAGGACCAATTCTCATTTGAGGAAGAGAGCACTTCTGGAATCTTTAGCTTTTGACTAGGATGAGCACCAAGTACATCGGGGAATTTATGTAATGAATTGCGATGCTTTTCTGAAGTCTCCGAGGAATTATTGTTCTCACATTTCATCCGCTATTTCCAGTATCCATCCTACTCGCAATTAGCATCGGCCATCATGTACATTCCTTCCACACTCTGTATTTGGAGACCAGGGCGTGGCATGTTTTTTTTTTTTTTTAGCTTTACTCTTGTGTGCCTCTTCTGACTATGAGGAGTTTGTACGCAATAATGGCCTCCGTGACGATCTGATTTTGTAATTAAACATTTGAATACTGTAGATTCCTAGGCAGACCGATTGTGCAGTTCAAAAAAAA ]
[-] EMBL CB637908 [ GTTTTCTGTCCCAAAAAGTTGCAGAGAGCTTTTACCTTCACCGATGCAGAGGTTGAGGACCAATTTTCATTTGAGGAAGAGAGCACTTCTGGAATCTTTAGCTTTTGACTAGGATGAGCACCAAGTACATCGGGGAATTTATGTAATGAATTGCGATGCTTTTTTGAAGTCTCCGAGGAATTATTGTTTTCACATTTCATCCGCTATTTCCAGTATCCATCCTACTCGCAATTAGCATCGGCCATCATGTACATTCCTTCCACACTCTGTATTTGGAGACCAGGGCGTGGCATG TTTTTTTTTTTTTAGCTTTACTCTTGTGTGCCTCTTCTGACTATGAGGAGTTTGTACGCAATAATGGCCTCCGTGACGATCTGATTTTGTAATTAAACATTTGAATACTGTAGATTCCTAGGCAGACCGATTGTGCAGTTCAGTTGGGGTTTGACCTATACTCCTATGTGCAGTTTTGAATCTATTGCTACCAGTAAGGAAGCAAACCAGTGTACATTAATTAGTACTCTTTCCCGTCTCCCTAATATAAGGGATTTTTGATAT]
consensusID : consensus_14242#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 242 fasta sequence
[TCATGTACATTCCTTCCCACTCTGTATTTGGAGACCAGGGCGTGGCATGTTTTTTTTTTTTAGCTTTACTCTTGTGTGCCTCTTCTGACTATGAGGAGTTTGTACGCAATAATGGCCTCCGTGACGATCTGATTTTGTAATTAAACATTTGAATACTGTAGATTCCTAGGCAGACCGATTGTGCAGTTCAGTTGGGGTTTGACCTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF315971 [TCATGTACATTCCTTCCCACTCTGTATTTGGAGACCAGGGCGTGGCATGTTTTTTTTTTTTAGCTTTACTCTTGTGTGCCTCTTCTGACTATGAGGAGTTTGTACGCAATAATGGCCTCCGTGACGATCTGATTTTGTAATTAAACATTTGAATACTGTAGATTCCTAGGCAGACCGATTGTGCAGTTCAGTTGGGGTTTGACCTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_14242#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 171 fasta sequence
[GCTTTTGACTAGGATGAGCACCAAGTACATCGGGGAATTTATGTAATGAATTGCGATGCTTTTCTGAAGTCTCCGAGGAATTATTGTTCTCACATTTCATCCGCTATTTCCAGTATCCATCCTACTCGCAATTAGCATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF318148 [GCTTTTGACTAGGATGAGCACCAAGTACATCGGGGAATTTATGTAATGAATTGCGATGCTTTTCTGAAGTCTCCGAGGAATTATTGTTCTCACATTTCATCCGCTATTTCCAGTATCCATCCTACTCGCAATTAGCATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14242#0 TGCCTTTTGCTGTGTGCGCTGTGTTGGTGGGCTGTGACGAGGGCGCGAATGGCCGGCGCC 60
consensus_14242#1 ------------------------------------------------------------
consensus_14242#2 ------------------------------------------------------------
consensus_14242#0 TCCTCCACCTCCGCGTCGGCGCGGGCCACGCCACCGGCTCGCTCATTGCCTCCGCTCGGC 120
consensus_14242#1 ------------------------------------------------------------
consensus_14242#2 ------------------------------------------------------------
consensus_14242#0 GCGTCGGGGAGCCAGCAGGAGCCGGCTGCCACTGCGAGCCACCACGCCGCCGGCGCCGGC 180
consensus_14242#1 ------------------------------------------------------------
consensus_14242#2 ------------------------------------------------------------
consensus_14242#0 GCCTCGTCCAGGCCGATGCGGCGCAAGGGAAGGAAGCAGAAGCAGCTGTGGCCGAAGACG 240
consensus_14242#1 ------------------------------------------------------------
consensus_14242#2 ------------------------------------------------------------
consensus_14242#0 GTGCTTCGGAAATGGCTCAACATCAGGTCGCCGGAATCCGACTTCAGCGCCGACGAGGGC 300
consensus_14242#1 ------------------------------------------------------------
consensus_14242#2 ------------------------------------------------------------
consensus_14242#0 GAAGCCACCGGCGACGACGACACCGATAGCGAGTTCGAGTACGAAGAAATGTGCCATTGG 360
consensus_14242#1 ------------------------------------------------------------
consensus_14242#2 ------------------------------------------------------------
consensus_14242#0 GAGCGCCAACTATATGATGAGGAGAGGAGACTGCGTGGTTTGGGCGCTGAGACAATTGAT 420
consensus_14242#1 ------------------------------------------------------------
consensus_14242#2 ------------------------------------------------------------
consensus_14242#0 AGCCAAATGGAGGGTGCTCCCTACAAGCTTAATAGAAGGCGCAAGTCAGAGACCCTTCGT 480
consensus_14242#1 ------------------------------------------------------------
consensus_14242#2 ------------------------------------------------------------
consensus_14242#0 GCCCAATATATCGACATTAAGGAACTCAGGGTCTGCGTAGGAACATGGAATGTTGCAGGA 540
consensus_14242#1 ------------------------------------------------------------
consensus_14242#2 ------------------------------------------------------------
consensus_14242#0 AGACTTCCACCTGATGACTTGGATATTCAAGATTGGTTGGATATGGAGGAGCCAGCTGAT 600
consensus_14242#1 ------------------------------------------------------------
consensus_14242#2 ------------------------------------------------------------
consensus_14242#0 ATTTATGTTCTTGGATTTCAAGAAATTGTTCCATTAAATGCTGGGAATATATTTGGTGCT 660
consensus_14242#1 ------------------------------------------------------------
consensus_14242#2 ------------------------------------------------------------
consensus_14242#0 GAAGACAACCGTCCTGTCGCAATGTGGGAACATATCATTCGTGAAACATTGAATAAGATT 720
consensus_14242#1 ------------------------------------------------------------
consensus_14242#2 ------------------------------------------------------------
consensus_14242#0 AGTCCTGATAAACCAAAATATAAATGTCACAGTGATCCTCCTTCTCCATCAAGGTTCAAG 780
consensus_14242#1 ------------------------------------------------------------
consensus_14242#2 ------------------------------------------------------------
consensus_14242#0 CCTTCTGACGATGTGGAAGATGAACTTGTTAGTGAATCTGACAGCGAAAGTGGCGGGGAA 840
consensus_14242#1 ------------------------------------------------------------
consensus_14242#2 ------------------------------------------------------------
consensus_14242#0 GTGCACCCATGGAATGAACAAGATTTTACCGTTGATGATGACAGTGTTCATAGTAATAAA 900
consensus_14242#1 ------------------------------------------------------------
consensus_14242#2 ------------------------------------------------------------
consensus_14242#0 TATGAGCACTCTACTTCTGGTCCTACTGAAACTACCGTAAATGGAAACAACTTCAGCAGG 960
consensus_14242#1 ------------------------------------------------------------
consensus_14242#2 ------------------------------------------------------------
consensus_14242#0 GTGCCTTCAATGAAGATTTTCGATAGATCACACAACTTAAGTTTTAAAGACTATGTATCT 1020
consensus_14242#1 ------------------------------------------------------------
consensus_14242#2 ------------------------------------------------------------
consensus_14242#0 AGTTTGGAAGAGCCAATCCATCAAAAAATGTTAACTAAAACACTCAGCTACTCAGAGAGG 1080
consensus_14242#1 ------------------------------------------------------------
consensus_14242#2 ------------------------------------------------------------
consensus_14242#0 CTTGGAATGATTTGGCCTGAACAACCGTTGGATATATTGGCCCAGCGTCTTCCAGACAGC 1140
consensus_14242#1 ------------------------------------------------------------
consensus_14242#2 ------------------------------------------------------------
consensus_14242#0 ACGAAACCATTTATTTCAGAGAAGGCACTGAGGTCATGTTTGTCTTTCAAATCAGCACAT 1200
consensus_14242#1 ------------------------------------------------------------
consensus_14242#2 ------------------------------------------------------------
consensus_14242#0 GGAGATTCCAATGCTTTTCCAGATGATTGTTTAGTTCATGATTTTAACATCAAAGTGCAC 1260
consensus_14242#1 ------------------------------------------------------------
consensus_14242#2 ------------------------------------------------------------
consensus_14242#0 TAGTCAAAACGAAAAGACCATACTTCGTAAGGATAATAAGCAAGCAGATGGTTGGAGTTT 1320
consensus_14242#1 ------------------------------------------------------------
consensus_14242#2 ------------------------------------------------------------
consensus_14242#0 TTATTTCAATATGGGTACGAAGAAGCCTGCGGAAGCATATTCAAAATTTGAAAGTATCAA 1380
consensus_14242#1 ------------------------------------------------------------
consensus_14242#2 ------------------------------------------------------------
consensus_14242#0 CCGTAGGTGTCGGTGCTATGGGTTATATTGGTAATAAGGGATCAATAGCAGTAAGCATGT 1440
consensus_14242#1 ------------------------------------------------------------
consensus_14242#2 ------------------------------------------------------------
consensus_14242#0 CCATTTATCAAACACTCTTTTGCTTTATATGTTGCCACCTGACCTCTGGAGAAAAGGATG 1500
consensus_14242#1 ------------------------------------------------------------
consensus_14242#2 ------------------------------------------------------------
consensus_14242#0 GAGATGAACTGAAAAGGAATGCTGATGTGCAAGAAATCCATCGAAGGACAATATTTAATC 1560
consensus_14242#1 ------------------------------------------------------------
consensus_14242#2 ------------------------------------------------------------
consensus_14242#0 CGGTTTCCAGAGTTAGCATGCCTAAGACTATATATGACCATGAAAGGATAATATGGTTAG 1620
consensus_14242#1 ------------------------------------------------------------
consensus_14242#2 ------------------------------------------------------------
consensus_14242#0 GAGATCTCAATTATAGGATCAACTTATCATATGAAAAAACACATGAATTCATATCCATGA 1680
consensus_14242#1 ------------------------------------------------------------
consensus_14242#2 ------------------------------------------------------------
consensus_14242#0 AGGACTGGAATGGTTTGTTCCAGAATGACCAGCTAAAACGAGAATTTAAGAAAGGGCATT 1740
consensus_14242#1 ------------------------------------------------------------
consensus_14242#2 ------------------------------------------------------------
consensus_14242#0 TATTTGATGGGTGGACTGAAGGAGTTATCAGCTTTCCCCCGACATACAAGTACAAGGTTA 1800
consensus_14242#1 ------------------------------------------------------------
consensus_14242#2 ------------------------------------------------------------
consensus_14242#0 ACTCAGAGAAATACACGAGTGATGAGCCAAAATCTGGAAGGAGAACACCTGCCTGGTGTG 1860
consensus_14242#1 ------------------------------------------------------------
consensus_14242#2 ------------------------------------------------------------
consensus_14242#0 ACCGAATTCTTTCCTTTGGCAAGGGAATGAGGCTGCAGGCCTACAGGACAGTTGATATCA 1920
consensus_14242#1 ------------------------------------------------------------
consensus_14242#2 ------------------------------------------------------------
consensus_14242#0 GGCTATCCGATCACCGCCCTGTGACAGCTGTGTACACTTCCGATGTTGAGGTTTTCTGTC 1980
consensus_14242#1 ------------------------------------------------------------
consensus_14242#2 ------------------------------------------------------------
consensus_14242#0 CCAAAAAGTTGCAGAGAGCTCTTACCTTCACCGATGCAGAGGTTGAGGACCAATTCTCAT 2040
consensus_14242#1 ------------------------------------------------------------
consensus_14242#2 ------------------------------------------------------------
consensus_14242#0 TTGAGGAAGAGAGCACTTCTGGAATCTTTAGCTTTTGACTAGGATGAGCACCAAGTACAT 2100
consensus_14242#1 ------------------------------------------------------------
consensus_14242#2 ------------------------------------------------------------
consensus_14242#0 CGGGGAATTTATGTAATGAATTGCGATGCTTTTCTGAAGTCTCCGAGGAATTATTGTTCT 2160
consensus_14242#1 ------------------------------------------------------------
consensus_14242#2 ------------------------------------------------------------
consensus_14242#0 CACATTTCATCCGCTATTTCCAGTATCCATCCTACTCGCAATTAGCATCGGCCATCATGT 2220
consensus_14242#1 ------------------------------------------------------TCATGT 6
consensus_14242#2 ------------------------------------------------------------
consensus_14242#0 ACATTCCTTCCACACTCTGTATTTGGAGACCAGGGCGTGGCATGTTTTTTTTTTTTTAGC 2280
consensus_14242#1 ACATTCCTTCC-CACTCTGTATTTGGAGACCAGGGCGTGGCATGTTTTTTTTTTTT-AGC 64
consensus_14242#2 ----------------------------------------------------------GC 2
**
consensus_14242#0 TTTACTCTTGTGTGCCTCTTCTGACTATGAGGAGTTTGTACGCAATAATGGCCTCCGTGA 2340
consensus_14242#1 TTTACTCTTGTGTGCCTCTTCTGACTATGAGGAGTTTGTACGCAATAATGGCCTCCGTGA 124
consensus_14242#2 TTTTGACTAGGATGAGCACCAAGTACATCGGGGAATT-TATGTAATGA--ATTGCGATGC 59
*** ** * ** * ** ** ** ** * *** * * **
consensus_14242#0 CGATCTGATTTTGTAATTAAACATTTGAATACTGTAGATTCCTAGGCAGACCGATTGTGC 2400
consensus_14242#1 CGATCTGATTTTGTAATTAAACATTTGAATACTGTAGATTCCTAGGCAGACCGATTGTGC 184
consensus_14242#2 TTTTCTGAAGTCTCCGAGGAATTATTGT-TCTCACATTTCATCCGCTATTTCCAGTATCC 118
***** * ** *** * * * * * * * * * *
consensus_14242#0 AGTTCAAAAAAAATTTGACCTATACTCCTATGTGCAGTTTTGAATCTATTGCTACCAGTA 2460
consensus_14242#1 AGTTCAGTTGGGGTTTGACCTATAAAAAAAAAAAAAAAAAAAAA------------AAAA 232
consensus_14242#2 ATCCTACTCGCAATTAGCATCAAAAAAAAAAAAAAAAAAAAAAA------------AAAA 166
* * ** * * * * * ** * *
consensus_14242#0 AGGAAGCAAACCAGTGTACATTAATTAGTACTCTTTCCCGTCTCCCTAATATAAGGGATT 2520
consensus_14242#1 AAAAAAAAAA-------------------------------------------------- 242
consensus_14242#2 AAAAA------------------------------------------------------- 171
* **
consensus_14242#0 TTTGATAT 2528
consensus_14242#1 --------
consensus_14242#2 --------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||