These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14242#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 2528 fasta sequence [TGCCTTTTGCTGTGTGCGCTGTGTTGGTGGGCTGTGACGAGGGCGCGAATGGCCGGCGCCTCCTCCACCTCCGCGTCGGCGCGGGCCACGCCACCGGCTCGCTCATTGCCTCCGCTCGGCGCGTCGGGGAGCCAGCAGGAGCCGGCTGCCACTGCGAGCCACCACGCCGCCGGCGCCGGCGCCTCGTCCAGGCCGATGCGGCGCAAGGGAAGGAAGCAGAAGCAGCTGTGGCCGAAGACGGTGCTTCGGAAATGGCTCAACATCAGGTCGCCGGAATCCGACTTCAGCGCCGACGAGGGCGAAGCCACCGGCGACGACGACACCGATAGCGAGTTCGAGTACGAAGAAATGTGCCATTGGGAGCGCCAACTATATGATGAGGAGAGGAGACTGCGTGGTTTGGGCGCTGAGACAATTGATAGCCAAATGGAGGGTGCTCCCTACAAGCTTAATAGAAGGCGCAAGTCAGAGACCCTTCGTGCCCAATATATCGACATTAAGGAACTCAGGGTCTGCGTAGGAACATGGAATGTTGCAGGAAGACTTCCACCTGATGACTTGGATATTCAAGATTGGTTGGATAT-GGAGGAGCCAGCTGATATTTATGTTCTTGGATTTCAAGAAATTGTTCCATTAAATGCTGGGAATATA-TTTGGTGCTGAAGACAACCGTCCTGTCGCAATGTGGGAACATATCATTCGTGAAACATTGAATAAGATTAGTCCTGATAAACCAAAATATAAATGTCACAGTGATCCTCCTTCTCCATCAAGGTTCAAGCCTTCTGACGATGTGGAAGATGAACTTGTTAGTGAATCTGACAGCGAAAGTGGC-GGGGAAGTGCACCCATGGAATGAACAAGATTTTACCGTTGATGATGACAGTGTTCATAGTAATAAATATGAGCACTCTACTTCTGGTCCTACTGAAACTACCGTAAATGGAAACAACTTCAGCAGGGTGCCTTCAATGAAGATTTTCGATAGATCACACAACTTAAGTTTTAAAGACTATGTATCTAGTTTGGAAGAGCCAATCCATCAAAAAATGTTAACTAAAACACTCAGCTACTCAGAGAGGCTTGGAATGATTTGGCCTGAACAACCGTTGGATATATTGGCCCAGCGTCTTCCAGACAGCACGAAACCATTTATTTCAGAGAAGGCACTGAGGTCATGTTTGTCTTTCAAATCAGCACATGGAGATTCCAATGCTTTTCCAGATGATTGTTTAGTTCATGATTTTAACATC-AAAGTGCACTAGTCAAAACGAAAAGACCATACTTCGTAAGGATAATAAGCAAGCAGATGGTTGGAGTTTTTATTTCAATATGGGTACGAAGAAGCCTGCGGAAGCATATTCAAAATTTGAAAGTATCAACCGTAGGTGTCGGTGCTATGGGTTATATTGGTAATAAGGGATCAATAGCAGTAAGCATGTCCATTTATCAAACACTCTTTTGCTTTATATGTTGCCACCTGACCTCTGGAGAAAAGGATGGAGATGAACTGAAAAGGAATGCTGATGTGCAAGAAATCCATCGAAGGACAATATTTAATCCGGTTTCCAGAGTTAGCATGCCTAAGACTATATATGACCATGAAAGGATAATATGGTTAGGAGATCTCAATTATAGGATCAACTTATCATATGAAAAAACACATGAATTCATATCCATGAAGGACTGGAATGGTTTGTTCCAGAATGACCAGCTAAAACGAGAATTTAAGAAAGGGCATTTATTTGATGGGTGGACTGAAGGAGTTATCAGCTTTCCCCCGACATACAAGTACAAGG-TTAACTCAGAG-AAATACACGAGTGAT-GAGCCAAAATCTGGAAGGAGAACACCTGCCTGGTGTGACCGAATTCTTTCCTTTGGCAAGGGAATGAGGCTGCAGGCCTACAGGACAGTTGATATCAGGCTAT-CCGATCACCG-CCCTGTGACAGCTGTGTACACTTCCGATG-TTGAGGTTTTCTGTCCCAAAAAGTTGCAGAGAGCTCTTACCTTCACCGATGCAGAGGTTGAGGACCAATTCTCATTTGAGGAAGAGAGCACTTCTGGAATCTTTAGCTTTTGACTAGGATGAGCACCAAGTACATCGGGGAATTTATGTAATGAATTGCGATGCTTTTCTGAAGTCTCCGAGGAATTATTGTTCTCACATTTCATCCGCTATTTCCAGTATCCATCCTACTCGCAATTAGCATCGGCCATCATGTACATTCCTTCCACACTCTGTATTTGGAGACCAGGGCGTGGCATG--TTTTTTTTTTTTTAGCTTTACTCTTGTGTGCCTCTTCTGACTATGAGGAGTTTGTACGCAATAATGGCCTCCGTGACGATCTGATTTTGTAATTAAACATTTGAATACTGTAGATTCCTAGGCAGACCGATTGTGCAGTTCAAAAAAAATTTGACCTATACTCCTATGTGCAGTTTTGAATCTATTGCTACCAGTAAGGAAGCAAACCAGTGTACATTAATTAGTACTCTTTCCCGTCTCCCTAATATAAGGGATTTTTGATAT] [+] EMBL AK101741 [TGCCTTTTGCTGTGTGCGCTGTGTTGGTGGGCTGTGACGAGGGCGCGAATGGCCGGCGCCTCCTCCACCTCCGCGTCGGCGCGGGCCACGCCACCGGCTCGCTCATTGCCTCCGCTCGGCGCGTCGGGGAGCCAGCAGGAGCCGGCTGCCACTGCGAGCCACCACGCCGCCGGCGCCGGCGCCTCGTCCAGGCCGATGCGGCGCAAGGGAAGGAAGCAGAAGCAGCTGTGGCCGAAGACGGTGCTTCGGAAATGGCTCAACATCAGGTCGCCGGAATCCGACTTCAGCGCCGACGAGGGCGAAGCCACCGGCGACGACGACACCGATAGCGAGTTCGAGTACGAAGAAATGTGCCATTGGGAGCGCCAACTATATGATGAGGAGAGGAGACTGCGTGGTTTGGGCGCTGAGACAATTGATAGCCAAATGGAGGGTGCTCCCTACAAGCTTAATAGAAGGCGCAAGTCAGAGACCCTTCGTGCCCAATATATCGACATTAAGGAACTCAGGGTCTGCGTAGGAACATGGAATGTTGCAGGAAGACTTCCACCTGATGACTTGGATATTCAAGATTGGTTGGATAT GGAGGAGCCGGCTGATATTTATGTTCTTGGATTTCAAGAAATTGTTCCATTAAATGCTGGGAATATA TTTGGTGCTGAAGACAACCGTCCTGTCGCAATGTGGGAACATATCATTCGTGAAACATTGAATAAGATTAGTCCTGATAAACCAAAATATAAATGTCACAGTGATCCTCCTTCTCCATCAAGGTTCAAGCCTTCTGACGATGTGGAAGATGAACTTGTTAGTGAATCTGACAGCGAAAGTGGC GGGGAAGTGCACCCATGGAATGAACAAGATTTTACCGTTGATGATGACAGTGTTCATAGTAATAAATATGAGCACTCTACTTCTGGTCCTACTGAAACTACCGTAAATGGAAACAACTTCAGCAGGGTGCCTTCAATGAAGATTTTCGATAGATCACACAACTTAAGTTTTAAAGACTATGTATCTAGTTTGGAAGAGCCAATCCATCAAAAAATGTTAACTAAAACACTCAGCTACTCAGAGAGGCTTGGAATGATTTGGCCTGAACAACCGTTGGATATATTGGCCCAGCGTCTTCCAGACAGCACGAAACCATTTATTTCAGAGAAGGCACTGAGGTCATGTTTGTCTTTCAAATCAGCACATGGAGATTCCAATGCTTTTCCAGATGATTGTTTAGTTCATGATTTTAACATC AAAGTGCACTAGTCAAAACGAAAAGACCATACTTCGTAAGGATAATAAGCAAGCAGATGGTTGGAGTTTTTATTTCAATATGGGTACGAAGAAGCCTGCGGAAGCATATTCAAAATTTGAAAGTATCAACCGTAGGTGTCGGTGCTATGGGTTATATTGGTAATAAGGGATCAATAGCAGTAAGCATGTCCATTTATCAAACACTCTTTTGCTTTATATGTTGCCACCTGACCTCTGGAGAAAAGGATGGAGATGAACTGAAAAGGAATGCTGATGTGCAAGAAATCCATCGAAGGACAATATTTAATCCGGTTTCCAGAGTTAGCATGCCTAAGACTATATATGACCATGAAAGGATAATATGGTTAGGAGATCTCAATTATAGGATCAACTTATCATATGAAAAAACACATGAATTCATATCCATGAAGGACTGGAATGGTTTGTTCCAGAATGACCAGCTAAAACGAGAATTTAAGAAAGGGTATTTATTTGATGGGTGGACTGAAGGAGTTATCAGCTTTCCCCCGACATACAAGTACAAGG TTAACTCAGAG AAATACACGAGTGAT GAGCCAAAATCTGGAAGGAGAACACCTGCCTGGTGTGACCGAATTCTTTCCTTTGGCAAGGGAATGAGGCTGCAGGCCTACAGGACAGTTGATATCAGGCTAT CCGATCACCG CCCTGTGACAGCTGTGTACACTTCCGATG TTGAGGTTTTCTGTCCCAAAAAGTTGCAGAGAGCTCTTACCTTCACCGATGCAGAGGTTGAGGACCAATTCTCATTTGAGGAAGAGAGCACTTCTGGAATCTTTAGCTTTTGACTAGGATGAGCACCAAGTACATCGGGGAATTTATGTAATGAATTGCGATGCTTTTCTGAAGTCTCCGAGGAATTATTGTTCTCACATTTCATCCGCTATTTCCAGTATCCATCCTACTCGCAATTAGCATCGGCCATCATGTACATTCCTTCCACACTCTGTATTTGGAGACCAGGGCGTGGCATG TTTTTTTTTTTTTAGCTTTACTCTTGTGTGCCTCTTCTGACTATGAGGAGTTTGTACGCAATAATGGCCTCCGTGACGATCTGATTTTGTAATTAAACATTTGAATACTGTAG ] [+] EMBL AK101771 [ ACGAGGGCGCGAATGGCCGGCGCCTCCTCCACCTCCGCGTCGGCGCGGGCCACGCCACCGGCTCGCTCATTGCCTCCGCTCGGCGCGTCGGGGAGCCAGCAGGAGCCGGCTGCCACTGCGAGCCACCACGCCGCCGGCGCCGGCGCCTCGTCCAGGCCGATGCGGCGCAAGGGAAGGAAGCAGAAGCAGCTGTGGCCGAAGACGGTGCTTCGGAAATGGCTCAACATCAGGTCGCCGGAATCCGACTTCAGCGCCGACGAGGGCGAAGCCACCGGCGACGACGACACCGATAGCGAGTTCGAGTACGAAGAAATGTGCCATTGGGAGCGCCAACTATATGATGAGGAGAGGAGACTGCGTGGTTTGGGCGCTGAGACAATTGATAGCCAAATGGAGGGTGCTCCCTACAAGCTTAATAGAAGGCGCAAGTCAGAGACCCTTCGTGCCCAATATATCGACATTAAGGAACTCAGGGTCTGCGTAGGAACATGGAATGTTGCAGGAAGACTTCCACCTGATGACTTGGATATTCAAGATTGGTTGGATAT GGAGGAGCCAGCTGATATTTATGTTCTTGGATTTCAAGAAATTGTTCCATTAAATGCTGGGAATATA TTTGGTGCTGAAGACAACCGTCCTGTCGCAATGTGGGAACATATCATTCGTGAAACATTGAATAAGATTAGTCCTGATAAACCAAAATATAAATGTCACAGTGATCCTCCTTCTCCATCAAGGTTCAAGCCTTCTGACGATGTGGAAGATGAACTTGTTAGTGAATCTGACAGCGAAAGTGGC GGGGAAGTGCACCCATGGAATGAACAAGATTTTACCGTTGATGATGACAGTGTTCATAGTAATAAATATGAGCACTCTACTTCTGGTCCTACTGAAACTACCGTAAATGGAAACAACTTCAGCAGGGTGCCTTCAATGAAGATTTTCGATAGATCACACAACTTAAGTTTTAAAGACTATGTATCTAGTTTGGAAGAGCCAATCCATCAAAAAATGTTAACTAAAACACTCAGCTACTCAGAGAGGCTTGGAATGATTTGGCCTGAACAACCGTTGGATATATTGGCCCAGCGTCTTCCAGACAGCACGAAACCATTTATTTCAGAGAAGGCACTGAGGTCATGTTTGTCTTTCAAATCAGCACATGGAGATTCCAATGCTTTTCCAGATGATTGTTTAGTTCATGATTTTAACATCAAAAGTGCACTAGTCAAAACGAAAAGACCATGCTTCGTAAGGATAATAAGCAAGCAGATGGTTGGAGTTTTTATTTCAATATGGGTACGAAGAAGCATGCGGAAGCATATTCAAAATTTGAGAGTATCAACCGTAGGTGTCGGTGCTATGGGTTATATTGGTAATAAGGGATCAATAGCAGTAAGCATGTCCATTTATCAAACACTCTTTTGCTTTATATGTTGCCACCTGACCTCTGGAGAAAAG ] [+] EMBL CB637907 [ GCGAATGGCCGGCGCCTCCTCCACCTCCGCGTCGGCGCGGGCCACGCCACCGGCTCGCTCATTGCCTCCGCTCGGCGCGTCGGGGAGCCAGCAGGAGCCGGCTGCCACTGCGAGCCACCACGCCGCCGGCGCCGGCGCCTCGTCCAGGCCGATGCGGCGCAAGGGAAGGAAGCATAAGCAGCTGTGGCCGAAGACGGTGCTTCGGAAATGGCTCAACATCAGGTCGCCGGAATCCGACTTCAGCGCCGACGAGGGCGAAGCCACCGGCGACGACGACACCGATAGCGAGTTCGAGTACGAAGAAATGTGCCATTGGGAGCGCCAACTATATGATGAGGAGAGGAGACTGCGTGGTTTGGGCGCTGAGACAATTGATAGCCAAATGGAGGGTGCTCCCTACAAGCTTAATAGAAGGCGCAAGTCAGAGACCCTTCGTGCCCAATAT ] [+] EMBL CF306295 [ CCACGCCACCGGCTCGCTCATTGCCTCCGCTCGGCGCGTCGGGGAGCCAGCAGGAGCCGGCTGCCACTGCGAGCCACCACGCCGCCGGCGCCGGCGCCTCGTCCAGGCCGATGCGGCGCAAGGGAAGGAAGCAGAAGCAGCTGTGGCCGAAGACGGTGCTTCGGAAATGGCTCAACATCAGGTCGCCGGAATCCGACTTCAGCGCCGACGAGGGCGAAGCCACCGGCGACGACGACACCGATAGCGAGTTCGAGTACGAAGAAATGTGCCATTGGGAGCGCCAACTATATGATGAGGAGAGGAGACTGCGTGGTTTGGGCGCTGAGACAATTGATAGCCAAATGGAGGGTGCTCCCTACAAGCTTAATAGAAGGCGCAAGTCAGAGACCCTTCGTGCCCAATATATCGACATTAAGGAACTCAGGGTCTGCGTAGGAACATGGAATGTTGCAGGAAGACTTCCACCTGATGACTTGGATATTCAAGATTGGTTGGATNTGGGAGGAGCCAGCTGATATTTATGTTCTTGGATTTCAAGAAATTGTTCCATTAAATGCTGGGAATATATTTTGGTGCTGAAGACAACCGTCCTGTCGCAATGTGGGAACATATCATTCGT ] [+] EMBL CF323583 [ GCAAGGGAAGGAAGCAGAAGCAGCTGTGGCCGAAGACGGTGCTTCGGAAATGGCTCAACATCAGGTCGCCGGAATCCGACTTCAGCGCCGACGAGGGCGAAGCCACCGGCGACGACGACACCGATAGCGAGTTCGAGTACGAAGAAATGTGCCATTGGGAGCGCCAACTATATGATGAGGAGAGGAGACTGCGTGGTTTGGGCGCTGAGACAATTGATAGCCAAATGGAGGGTGCTCCCTACAAGCTTAATAGAAGGCGCAAGTCAGAGACCCTTCGTGCCCAATATATCGACATTAAGGAACTCAGGGTCTGCGTAGGAACATGGAATGTTGCAGGAAGACTTCCACCTGATGACTTGGATATTCAAGATTGGTTGGATAT GGAGGAGCCAGCTGATATTTATGTTC ] [+] EMBL CF306754 [ AGAAGCAGCTGTGGCCGAAGACGGTGCTTCGGAAATGGCTCAACATCAGGTCGCCGGAATCCGACTTCAGCGCCGACGAGGGCGAAGCCACCGGCGACGACGACACCGATAGCGAGTTCGAGTACGAAGAAATGTGCCATTGGGAGCGCCAACTATATGATGAGGAGAGGAGACTGCGTGGTTTGGGCGCTGAGACAATTGATAGCCAAATGGAGGGTGCTCCCTACAAGCTTAATAGAAGGCGCAAGTCAGAGACCCTTCGTGCCCAATATATCGACATTAAGGAACTCAGGGTCTGCGTAGGAACATGGAATGTTGCAGGAAGACTTCCACCTGATGACTTGGATATTCAAGATTGGTTGGATAT GGAGGAGCCAGCTGATATTTATGTTCTTGGATTTCAAGAAATTGTTCCATTAAATGCTGGGAATATA TTTGGTGCTGAAGACAACCGTCCTGTCGCAATGTGGGAACATATCATTCGTGAAACATTGAATAAGATTAGTCCTGATAAACCAAAATATAAATGTCACAGTGATCCTCCTTCTCCATCAAGGTTCAAGCCTTCTGACGATGTGGAAGATGAACTTGTTAGTGAATCTGACAGCGAAAGTGGCGGGGGAAGTGCACCCATGGAATGAACAAGATTNTACCGTTGATGATGACAGTGTTCATAGTAATAAATATGAGCACTCTACTTCTGGTCCTACTGAAACTACCGTAAATGGA ] [+] EMBL CF303712 [ ATATATCGACATTAAGGAACTCAGGGTCTGCGTAGGAACATGGAATGTTGCAGGAAGACTTCCACCTGATGACTTGGATATTCAAGATTGGTTGGATAT GGAGGAGCCAGCTGATATTTATGTTCTTGGATTTCAAGAAATTGTTCCATTAAATGCTGGGAATATA TTTGGTGCTGAAGACAACCGTCCTGTCGCAATGTGGGAACATATCATTCGTGAAACATTGAATAAGATTAGTCCTGATAAACCAAAATATAAATGTCACAGTGATCCTCCTTCTCCATCAAGGTTCAAGCCTTCTGACGATGTGGAAGATGAACTTGTTAGTGAATCTGACAGCGAAAGTGGC GGGGAAGTGCACCCATGGAATGAACAAGATTTTACCGTTGATGATGACAGTGTTCATAGTAATAAATATGAGCACTCTACTTCTGGTCCTACTGAAACTACCGTAAATGGAAACAACTTCAGCAGGGTGCCTTCAATGAAGATTTTCGATAGATCACACAACTTAAGTTTTAAAGACTATGTATCTAGTTTGGAAGAGCCAATCCATCAAAAAATGTTAACTAAAACACTCAGCTACTCAGAGAGGCTTGGAATGATTTGGCCTGAACAACCGTTGG ] [+] EMBL AU088599 [ ATAATATGGTTAGGAGATCTCAATTATAGGATCAACTTATCATATGAAAAAACACATGAATTCATATCCATGAAGGACTGGAATGGTTTGTTCCAGAATGACCAGCTAAAACGAGAATTTAAGAAAGGGCATTTATTTGATGGGTGGACTGAAGGAGTTATCAGCTTTCCCCCGACATACAAGTACAAGG TTAACTCAGAG AAATACACGAGTGAT GAGCCAAAATCTGGAAGGAGAACACCTGCCTGGTGTGACCGAATTCTTTCCTTTGGCAAGGGAATGAGGCTGCAGG CTACAGGACAGTTGATATCAGGCTAT CCGATCACCG CCCTGTGACAGCTGTGTACACTTCCGATG TTGAGG TTTCTGTCCCAAAAAGTTGCAGAGAG ] [+] EMBL C27831 [ TAATATGGTTAGGAGATCTCAATTATAGGATCAACTTATCATATGAAAAAACACATGAATTCATATCCATGAAGGACTGGAATGGTTTGTTCCAGAATGACCAGCTAAAACGAGAATTTAAGAAAGGGCATTTATTTGATGGGTGGACTGAAGGAGTTATCAGCTTTCCCCCGACATACAAGTACAAGG TTAACTCAGAG ACATACACGAGTGAT GAGCCAAAATCTGGAAGGAGAACACCTGCCTGGTGTGACCGAATTCTTTCCTTTGGCAAGGGAATGAGGCTGCAGGCCTACAGGACAGTTGATATCAGGCTATCCCGATCACCGNCCTTGTGACAGCTGTGTACACT ] [+] EMBL CF314988 [ TATCCATGAAGGACTGGAATGGTTTGTTCCAGAATGACCAGCTAAAACGAGAATTTAAGAAAGGGCATTTATTTGATGGGTGGACTGAAGGAGTTATCAGCTTTCCCCCGACATACAAGTACAAGG TTAACTCAGAG AAATACACGAGTGAT GAGCCAAAATCTGGAAGGAGAACACCTGCCTGGTGTGACCGAATTCTTTCCTTTGGCAAGGGAATGAGGCTGCAGGCCTACAGGACAGTTGATATCAGGCTAT CCGATCACCG CCCTGTGACAGCTGTGTACACTTCCGATGTTTGAGGTTTTCTGTCCCAAAAAGTTGCAGAGAGCTCTTACCTTCACCGATGCAGAGGTTGAGGACCAATTCTCATTTGAGGAAGAGAGCACTTCTGGAATCTTTAGCTTTTGACTAGGATGAGCACCAAGTACATCGGGGAATTTATGTAATGAATTGCGATGCTTTTCTGAAGTCTCCGAGGAATTATTGTTCTCACATTTCATCCGCTATTTCCAGTATCCATCCTACTCGCAATTAGCATCGGCCATCATGTACATTCCTTCC CACT ] [+] EMBL AU069284 [ AAGTACCAGGTTTAACTCAGGGNAATTACACGANTGATGGACCCAAAATCTGGAAGGAGNACACCTGCCTGGTGTGACCGAATTCTTTCCTTTGGCAAGGGAATGAAGCTGCAGGCCTACAGGACAGTTGATATCAGGCTAT CCGATCACCG CCCTGTGACAGCTGTGTACACTTCCGATG TTGAGGTTTTCTGTCCCAAAAAGTTGCAGAGAGCTCTTACCTTCACCGATGCAGAGGTTGAGGACCAATTCTCATTTGAGGAAGAGAGCACTTCTGGAATCTTTAGCTTTTGACTAGGATGAGCACCAAGTACATCGGGGAATTTATGTAATGAATTGCGATGCTTTTCTGAAGTCTCCGAGGAATTATTGTTCTCACATTTCATCCGCTATTTCCAGTATCCATCCTACTCGCAATTAGCATCGGCCATCATGTAaa ] [-] EMBL CF314989 [ AAGGGAATGAGGCTGCAGGCCTACAGGACAGTTGATATCAGGCTAT CCGATCACCG CCCTGTGACAGCTGTGTACACTTCCGATG TTGAGGTTTTCTGTCCCAAAAAGTTGCAGAGAGCTCTTACCTTCACCGATGCAGAGGTTGAGGACCAATTCTCATTTGAGGAAGAGAGCACTTCTGGAATCTTTAGCTTTTGACTAGGATGAGCACCAAGTACATCGGGGAATTTATGTAATGAATTGCGATGCTTTTCTGAAGTCTCCGAGGAATTATTGTTCTCACATTTCATCCGCTATTTCCAGTATCCATCCTACTCGCAATTAGCATCGGCCATCATGTACATTCCTTCCACACTCTGTATTTGGAGACCAGGGCGTGGCATGTTTTTTTTTTTTTTTAGCTTTACTCTTGTGTGCCTCTTCTGACTATGAGGAGTTTGTACGCAATAATGGCCTCCGTGACGATCTGATTTTGTAATTAAACATTTGAATACTGTAGATTCCTAGGCAGACCGATTGTGCAGTTCAAAAAAAA ] [-] EMBL CB637908 [ GTTTTCTGTCCCAAAAAGTTGCAGAGAGCTTTTACCTTCACCGATGCAGAGGTTGAGGACCAATTTTCATTTGAGGAAGAGAGCACTTCTGGAATCTTTAGCTTTTGACTAGGATGAGCACCAAGTACATCGGGGAATTTATGTAATGAATTGCGATGCTTTTTTGAAGTCTCCGAGGAATTATTGTTTTCACATTTCATCCGCTATTTCCAGTATCCATCCTACTCGCAATTAGCATCGGCCATCATGTACATTCCTTCCACACTCTGTATTTGGAGACCAGGGCGTGGCATG TTTTTTTTTTTTTAGCTTTACTCTTGTGTGCCTCTTCTGACTATGAGGAGTTTGTACGCAATAATGGCCTCCGTGACGATCTGATTTTGTAATTAAACATTTGAATACTGTAGATTCCTAGGCAGACCGATTGTGCAGTTCAGTTGGGGTTTGACCTATACTCCTATGTGCAGTTTTGAATCTATTGCTACCAGTAAGGAAGCAAACCAGTGTACATTAATTAGTACTCTTTCCCGTCTCCCTAATATAAGGGATTTTTGATAT] consensusID : consensus_14242#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 242 fasta sequence [TCATGTACATTCCTTCCCACTCTGTATTTGGAGACCAGGGCGTGGCATGTTTTTTTTTTTTAGCTTTACTCTTGTGTGCCTCTTCTGACTATGAGGAGTTTGTACGCAATAATGGCCTCCGTGACGATCTGATTTTGTAATTAAACATTTGAATACTGTAGATTCCTAGGCAGACCGATTGTGCAGTTCAGTTGGGGTTTGACCTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF315971 [TCATGTACATTCCTTCCCACTCTGTATTTGGAGACCAGGGCGTGGCATGTTTTTTTTTTTTAGCTTTACTCTTGTGTGCCTCTTCTGACTATGAGGAGTTTGTACGCAATAATGGCCTCCGTGACGATCTGATTTTGTAATTAAACATTTGAATACTGTAGATTCCTAGGCAGACCGATTGTGCAGTTCAGTTGGGGTTTGACCTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_14242#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 171 fasta sequence [GCTTTTGACTAGGATGAGCACCAAGTACATCGGGGAATTTATGTAATGAATTGCGATGCTTTTCTGAAGTCTCCGAGGAATTATTGTTCTCACATTTCATCCGCTATTTCCAGTATCCATCCTACTCGCAATTAGCATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF318148 [GCTTTTGACTAGGATGAGCACCAAGTACATCGGGGAATTTATGTAATGAATTGCGATGCTTTTCTGAAGTCTCCGAGGAATTATTGTTCTCACATTTCATCCGCTATTTCCAGTATCCATCCTACTCGCAATTAGCATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14242#0 TGCCTTTTGCTGTGTGCGCTGTGTTGGTGGGCTGTGACGAGGGCGCGAATGGCCGGCGCC 60 consensus_14242#1 ------------------------------------------------------------ consensus_14242#2 ------------------------------------------------------------ consensus_14242#0 TCCTCCACCTCCGCGTCGGCGCGGGCCACGCCACCGGCTCGCTCATTGCCTCCGCTCGGC 120 consensus_14242#1 ------------------------------------------------------------ consensus_14242#2 ------------------------------------------------------------ consensus_14242#0 GCGTCGGGGAGCCAGCAGGAGCCGGCTGCCACTGCGAGCCACCACGCCGCCGGCGCCGGC 180 consensus_14242#1 ------------------------------------------------------------ consensus_14242#2 ------------------------------------------------------------ consensus_14242#0 GCCTCGTCCAGGCCGATGCGGCGCAAGGGAAGGAAGCAGAAGCAGCTGTGGCCGAAGACG 240 consensus_14242#1 ------------------------------------------------------------ consensus_14242#2 ------------------------------------------------------------ consensus_14242#0 GTGCTTCGGAAATGGCTCAACATCAGGTCGCCGGAATCCGACTTCAGCGCCGACGAGGGC 300 consensus_14242#1 ------------------------------------------------------------ consensus_14242#2 ------------------------------------------------------------ consensus_14242#0 GAAGCCACCGGCGACGACGACACCGATAGCGAGTTCGAGTACGAAGAAATGTGCCATTGG 360 consensus_14242#1 ------------------------------------------------------------ consensus_14242#2 ------------------------------------------------------------ consensus_14242#0 GAGCGCCAACTATATGATGAGGAGAGGAGACTGCGTGGTTTGGGCGCTGAGACAATTGAT 420 consensus_14242#1 ------------------------------------------------------------ consensus_14242#2 ------------------------------------------------------------ consensus_14242#0 AGCCAAATGGAGGGTGCTCCCTACAAGCTTAATAGAAGGCGCAAGTCAGAGACCCTTCGT 480 consensus_14242#1 ------------------------------------------------------------ consensus_14242#2 ------------------------------------------------------------ consensus_14242#0 GCCCAATATATCGACATTAAGGAACTCAGGGTCTGCGTAGGAACATGGAATGTTGCAGGA 540 consensus_14242#1 ------------------------------------------------------------ consensus_14242#2 ------------------------------------------------------------ consensus_14242#0 AGACTTCCACCTGATGACTTGGATATTCAAGATTGGTTGGATATGGAGGAGCCAGCTGAT 600 consensus_14242#1 ------------------------------------------------------------ consensus_14242#2 ------------------------------------------------------------ consensus_14242#0 ATTTATGTTCTTGGATTTCAAGAAATTGTTCCATTAAATGCTGGGAATATATTTGGTGCT 660 consensus_14242#1 ------------------------------------------------------------ consensus_14242#2 ------------------------------------------------------------ consensus_14242#0 GAAGACAACCGTCCTGTCGCAATGTGGGAACATATCATTCGTGAAACATTGAATAAGATT 720 consensus_14242#1 ------------------------------------------------------------ consensus_14242#2 ------------------------------------------------------------ consensus_14242#0 AGTCCTGATAAACCAAAATATAAATGTCACAGTGATCCTCCTTCTCCATCAAGGTTCAAG 780 consensus_14242#1 ------------------------------------------------------------ consensus_14242#2 ------------------------------------------------------------ consensus_14242#0 CCTTCTGACGATGTGGAAGATGAACTTGTTAGTGAATCTGACAGCGAAAGTGGCGGGGAA 840 consensus_14242#1 ------------------------------------------------------------ consensus_14242#2 ------------------------------------------------------------ consensus_14242#0 GTGCACCCATGGAATGAACAAGATTTTACCGTTGATGATGACAGTGTTCATAGTAATAAA 900 consensus_14242#1 ------------------------------------------------------------ consensus_14242#2 ------------------------------------------------------------ consensus_14242#0 TATGAGCACTCTACTTCTGGTCCTACTGAAACTACCGTAAATGGAAACAACTTCAGCAGG 960 consensus_14242#1 ------------------------------------------------------------ consensus_14242#2 ------------------------------------------------------------ consensus_14242#0 GTGCCTTCAATGAAGATTTTCGATAGATCACACAACTTAAGTTTTAAAGACTATGTATCT 1020 consensus_14242#1 ------------------------------------------------------------ consensus_14242#2 ------------------------------------------------------------ consensus_14242#0 AGTTTGGAAGAGCCAATCCATCAAAAAATGTTAACTAAAACACTCAGCTACTCAGAGAGG 1080 consensus_14242#1 ------------------------------------------------------------ consensus_14242#2 ------------------------------------------------------------ consensus_14242#0 CTTGGAATGATTTGGCCTGAACAACCGTTGGATATATTGGCCCAGCGTCTTCCAGACAGC 1140 consensus_14242#1 ------------------------------------------------------------ consensus_14242#2 ------------------------------------------------------------ consensus_14242#0 ACGAAACCATTTATTTCAGAGAAGGCACTGAGGTCATGTTTGTCTTTCAAATCAGCACAT 1200 consensus_14242#1 ------------------------------------------------------------ consensus_14242#2 ------------------------------------------------------------ consensus_14242#0 GGAGATTCCAATGCTTTTCCAGATGATTGTTTAGTTCATGATTTTAACATCAAAGTGCAC 1260 consensus_14242#1 ------------------------------------------------------------ consensus_14242#2 ------------------------------------------------------------ consensus_14242#0 TAGTCAAAACGAAAAGACCATACTTCGTAAGGATAATAAGCAAGCAGATGGTTGGAGTTT 1320 consensus_14242#1 ------------------------------------------------------------ consensus_14242#2 ------------------------------------------------------------ consensus_14242#0 TTATTTCAATATGGGTACGAAGAAGCCTGCGGAAGCATATTCAAAATTTGAAAGTATCAA 1380 consensus_14242#1 ------------------------------------------------------------ consensus_14242#2 ------------------------------------------------------------ consensus_14242#0 CCGTAGGTGTCGGTGCTATGGGTTATATTGGTAATAAGGGATCAATAGCAGTAAGCATGT 1440 consensus_14242#1 ------------------------------------------------------------ consensus_14242#2 ------------------------------------------------------------ consensus_14242#0 CCATTTATCAAACACTCTTTTGCTTTATATGTTGCCACCTGACCTCTGGAGAAAAGGATG 1500 consensus_14242#1 ------------------------------------------------------------ consensus_14242#2 ------------------------------------------------------------ consensus_14242#0 GAGATGAACTGAAAAGGAATGCTGATGTGCAAGAAATCCATCGAAGGACAATATTTAATC 1560 consensus_14242#1 ------------------------------------------------------------ consensus_14242#2 ------------------------------------------------------------ consensus_14242#0 CGGTTTCCAGAGTTAGCATGCCTAAGACTATATATGACCATGAAAGGATAATATGGTTAG 1620 consensus_14242#1 ------------------------------------------------------------ consensus_14242#2 ------------------------------------------------------------ consensus_14242#0 GAGATCTCAATTATAGGATCAACTTATCATATGAAAAAACACATGAATTCATATCCATGA 1680 consensus_14242#1 ------------------------------------------------------------ consensus_14242#2 ------------------------------------------------------------ consensus_14242#0 AGGACTGGAATGGTTTGTTCCAGAATGACCAGCTAAAACGAGAATTTAAGAAAGGGCATT 1740 consensus_14242#1 ------------------------------------------------------------ consensus_14242#2 ------------------------------------------------------------ consensus_14242#0 TATTTGATGGGTGGACTGAAGGAGTTATCAGCTTTCCCCCGACATACAAGTACAAGGTTA 1800 consensus_14242#1 ------------------------------------------------------------ consensus_14242#2 ------------------------------------------------------------ consensus_14242#0 ACTCAGAGAAATACACGAGTGATGAGCCAAAATCTGGAAGGAGAACACCTGCCTGGTGTG 1860 consensus_14242#1 ------------------------------------------------------------ consensus_14242#2 ------------------------------------------------------------ consensus_14242#0 ACCGAATTCTTTCCTTTGGCAAGGGAATGAGGCTGCAGGCCTACAGGACAGTTGATATCA 1920 consensus_14242#1 ------------------------------------------------------------ consensus_14242#2 ------------------------------------------------------------ consensus_14242#0 GGCTATCCGATCACCGCCCTGTGACAGCTGTGTACACTTCCGATGTTGAGGTTTTCTGTC 1980 consensus_14242#1 ------------------------------------------------------------ consensus_14242#2 ------------------------------------------------------------ consensus_14242#0 CCAAAAAGTTGCAGAGAGCTCTTACCTTCACCGATGCAGAGGTTGAGGACCAATTCTCAT 2040 consensus_14242#1 ------------------------------------------------------------ consensus_14242#2 ------------------------------------------------------------ consensus_14242#0 TTGAGGAAGAGAGCACTTCTGGAATCTTTAGCTTTTGACTAGGATGAGCACCAAGTACAT 2100 consensus_14242#1 ------------------------------------------------------------ consensus_14242#2 ------------------------------------------------------------ consensus_14242#0 CGGGGAATTTATGTAATGAATTGCGATGCTTTTCTGAAGTCTCCGAGGAATTATTGTTCT 2160 consensus_14242#1 ------------------------------------------------------------ consensus_14242#2 ------------------------------------------------------------ consensus_14242#0 CACATTTCATCCGCTATTTCCAGTATCCATCCTACTCGCAATTAGCATCGGCCATCATGT 2220 consensus_14242#1 ------------------------------------------------------TCATGT 6 consensus_14242#2 ------------------------------------------------------------ consensus_14242#0 ACATTCCTTCCACACTCTGTATTTGGAGACCAGGGCGTGGCATGTTTTTTTTTTTTTAGC 2280 consensus_14242#1 ACATTCCTTCC-CACTCTGTATTTGGAGACCAGGGCGTGGCATGTTTTTTTTTTTT-AGC 64 consensus_14242#2 ----------------------------------------------------------GC 2 ** consensus_14242#0 TTTACTCTTGTGTGCCTCTTCTGACTATGAGGAGTTTGTACGCAATAATGGCCTCCGTGA 2340 consensus_14242#1 TTTACTCTTGTGTGCCTCTTCTGACTATGAGGAGTTTGTACGCAATAATGGCCTCCGTGA 124 consensus_14242#2 TTTTGACTAGGATGAGCACCAAGTACATCGGGGAATT-TATGTAATGA--ATTGCGATGC 59 *** ** * ** * ** ** ** ** * *** * * ** consensus_14242#0 CGATCTGATTTTGTAATTAAACATTTGAATACTGTAGATTCCTAGGCAGACCGATTGTGC 2400 consensus_14242#1 CGATCTGATTTTGTAATTAAACATTTGAATACTGTAGATTCCTAGGCAGACCGATTGTGC 184 consensus_14242#2 TTTTCTGAAGTCTCCGAGGAATTATTGT-TCTCACATTTCATCCGCTATTTCCAGTATCC 118 ***** * ** *** * * * * * * * * * * consensus_14242#0 AGTTCAAAAAAAATTTGACCTATACTCCTATGTGCAGTTTTGAATCTATTGCTACCAGTA 2460 consensus_14242#1 AGTTCAGTTGGGGTTTGACCTATAAAAAAAAAAAAAAAAAAAAA------------AAAA 232 consensus_14242#2 ATCCTACTCGCAATTAGCATCAAAAAAAAAAAAAAAAAAAAAAA------------AAAA 166 * * ** * * * * * ** * * consensus_14242#0 AGGAAGCAAACCAGTGTACATTAATTAGTACTCTTTCCCGTCTCCCTAATATAAGGGATT 2520 consensus_14242#1 AAAAAAAAAA-------------------------------------------------- 242 consensus_14242#2 AAAAA------------------------------------------------------- 171 * ** consensus_14242#0 TTTGATAT 2528 consensus_14242#1 -------- consensus_14242#2 -------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||