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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14245#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1079 fasta sequence
[TGTCCATCACAATTGCTAATTAACTAAGACACCCTTCCTTGATTGTGACACTAGCACGACGCACTTTCCTCTATATACATATACATATATCCTCCTTCCGTCCAGCTAACGGTTTATATGCTTAGCTAGCTGTTTGTTTTGGCGATACCATTTGCATTGCTTGCCCAGCATCGTCGTCGTCGTCGTCGGGAGCAAGGAGGAGGAGAGACCATCGATCTTGATTGATTTGAAGCTAGATGGCGGAGGAGGCGAAGAAGGTGGAGGTGACCAAGGACATCGCCGAAGAGAAGGCAGTGGTGCCGCTGCCGACGCCGCCGGCCACCGAGCACGACGACTCCAAGGCCATCGTCCTCGTCAAGGAAGCTGA-GGCTACAGGAGGTTCAGCTGAAAGAGATGC-TTATCTCGC-AAAAATTGTGT--CGGAG-AAGAGATTGGTAC-TGAT-CAATGCCTGGGAGG--AAAGCGAG-AAAGC-TAGAGCAGAGAACA-GGGCGGCCAAGAAGCTGTCATACATCACTTCA-T-GGGA-GAATG-CAAAGAAAGCAGAGATGGAGGCTGAGCTGAAAAGGATCGAGCAAGAACTGGAGAAGAAGAAGGCGGCGTACGAAGAGAAGCTGAAGAACAAGCTGGCATTGCTGCACAAGACGGCGGAGGAGAAGAGGGCGCTCACCACGGCGAAGCGTGGCGAGGAGCTGATCATGGCGGAGGAGATGGCCGCCAAGTACCGTGCAAAGGGCGAGGCTCCGACGAAGCTGTTCGGGCTCTTGAAAGCCTGAGAGAAATCATGAGGAGTTCATCATACATATATGCTGGGATTTGGTGTTGTTGATTAGTCTGTGAACTTACAGAAATTTGTATATGTGCAATGCATGGCATCCGTGTTTGCGTCGTGTGTATGTCGTCTAATTGAAGGGCCATTTGGTTTGTATTTTGTCAGTTGGGTGGTTTGATTTCTGGTGCGTTTTGTAAAGGAAT-TGTGTATATGCATAGGGGAGTGCAGGCAGGGGATGATGGATTATGAATACGCTTATTCTTTCATGAAGATTTGTTAGTAAAAAAACATTCGTTAATTGTTGTATTTTTTTCAAAAA]
[+] EMBL AK060379 [TGTCCATCACAATTGCTAATTAACTAAGACACCCTTCCTTGATTGTGACACTAGCACGACGCACTTTCCTCTATATACATATACATATATCCTCCTTCCGTCCAGCTAACGGTTTATATGCTTAGCTAGCTGTTTGTTTTGGCGATACCATTTGCATTGCTTGCCCAGCATCGTCGTCGTCGTCGTCGGGAGCAAGGAGGAGGAGAGACCATCGATCTTGATTGATTTGAAGCTAGATGGCGGAGGAGGCGAAGAAGGTGGAGGTGACCAAGGACATCGCCGAAGAGAAGGCAGTGGTGCCGCTGCCGACGCCGCCGGCCACCGAGCACGACGACTCCAAGGCCATCGTCCTCGTCAAGGAAGCTGA GGCTACAGGAGGTTCAGCTGAAAGAGATGC TTATCTCGC AAAAATTGTGT CGGAG AAGAGATTGGTAC TGAT CAATGCCTGGGAGG AAAGCGAG AAAGC TAGAGCAGAGAACA GGGCGGCCAAGAAGCTGTCATACATCACTTCA T GGGA GAATG CAAAGAAAGCAGAGATGGAGGCTGAGCTGAAAAGGATCGAGCAAGAACTGGAGAAGAAGAAGGCGGCGTACGAAGAGAAGCTGAAGAACAAGCTGGCATTGCTGCACAAGACGGCGGAGGAGAAGAGGGCGCTCACCACGGCGAAGCGTGGCGAGGAGCTGATCATGGCGGAGGAGATGGCCGCCAAGTACCGTGCAAAGGGCGAGGCTCCGACGAAGCTGTTCGGGCTCTTGAAAGCCTGAGAGAAATCATGAGGAGTTCATCATACATATATGCTGGGATTTGGTGTTGTTGATTAGTCTGTGAACTTACAGAAATTTGTATATGTGCAATGCATGGCATCCGTGTTTGCGTCGTGTGTATGTCGTCTAATTGAAGGGCCATTTGGTTTGTATTTTGTCAGTTGGGTGGTTTGATTTCTGGTGCGTTTTGTAAAGGAAT TGTGTATATGCATAGGGGAGTGCAGGCAGGGGATGATGGATTATGAATACGCTTA ]
[+] EMBL AU064116 [ AGCTGTTTGTTTTGGCGATACCATTTGCATTGCTTGCCCAGCATCGTCGTCGTCGTCGTCGGGAGCAAGGAGGAGGAGAGACCATCGATCTTGATTGATTTGAAGCTAGATGGCGGAGGAGGCGAAGAAGGTGGAGGTGACCAAGGACATCGCCGAAGAGAAGGCAGTGGTGCCGCTGCCGACGCCGCCGGCCACCGAGCACGACGACTCCAAGGCCATCGTCCTCGTCAAGGAAGCTGA GGCTACAGGAGGTTCAGCTGAAAGAGATGC TTATCTCGC AAAAATTGTGT CGGAGAAAGAGATTGGTAC TGAT CAATGCCTGGTAGGGAAAAGCGAG AAAGCTTAGAGCAGAGAACAGGGGCGGCCAAGAAGCTGTCATACATCACTTCATT GGGAGGATTN CAAGGAAAGCAGNGATTGAGGCTta ]
[+] EMBL OSS1714A [ AGCTGTTTGTTTTGGCGATACCATTTGCATTGCTTGCCCAGCATCGTCGTCGTCGTCGTCGGGAGCAAGGAGGAGGAGAGACCATCGATCTTGATTGATTTGAAGCTAGATGGCGGAGGAGGCGAAGAAGGTGGAGGTGACCAAGGACATCGCCGAAGAGAAGGCAGTNGTGCCGCTGCCGACGCCGCCGGCCACCGAGCACGACGACTCCAAGGCCATCGTCCTCGTCAAGGAAGCTGA GGCTACAGGAGGTTCAGCTGAAAGAGATGC TTATCTCGC AAAAATTGTGT CGGAG AAGAGATTGGTAC TGAT CAATGCCTGGGAGG AAAGCGAG AAAGC TAGAGCAGAGAACA GGGCGGCCAAGAAGCTGTCATACATCACTTCA T GGGA GAATG CAAAGAAAGCAGA ATGGAGGTTG ]
[+] EMBL AU064924 [ AGCTGTTTGTTTTGGCGATACCATTTGCATTGCTTGCCCAGCATCGTCGTCGTCGTCGTCGGGAGCAAGGAGGAGGAGAGACCATCGATCTTGATTGATTTGAAGCTAGATGGCGGAGGAGGCGAAGAAGGTGGAGGTGACCAAGGACATCGCCGAAGAGAAGGCAGTGGTGCCGCTGCCGACGCCGNC GNCACCGAGCACGACGACTCCAAGGCCATCGTCCTCGTCAAGGAAGCTGA GGCTACAGGAGGTTCAGCTGAAAGAGATGC TTATCTCGC AAAAATTNTGT CGGAG AAGAGATTGGTAC TNAT CAATGCCTGGGAGG AAAGCGAG AAAGT TAGAGCAGAGACCA GGGCGGCCAAGAAGCTNTCATACATC ]
[+] EMBL OSS2936A [ GCTGTTTGTTTTGGCGATACCATTTGCATTGCTTGCCCAGCATCGTCGTCGTCGTCGTCGGGAGCAAGGAGGAGGAGAGACCATCGATCTTGATTGATTTGAAGCTAGATGGCGGAGGAGGCGAAGAAGGTGGAGGTGACCAAGGACATCGCCGAAGAGAAGGCAGTGGTGCCGCTGCCGACGCCGCCGGCCACCGAGCACGACGACTCCAAGGCCATCGTCCTCGTCAAGGAAGCTGA GGCTACAGGAGGTTCAGCTGAAAGAGATGC TTATCTCGC AAAAATTGTGT CGGAG AAGAGATTGGTAC TGAT CAATGCCTGGGAGG AAAGCGAG AAAGC TAGAGCAGAGAACA GGGCGGCCAAGAAGCTGTCATACATCACTTCA TGGGGA GAATG CAAAGAAAGCAG ]
[+] EMBL OSS10315A [ GCTGTTTGTTTTGGCGATACCATTTGCATTNNTTGCCCAGCATCGTCGTCGTCGTCGTCGGGAGCAAGGAGGAGGAGAGACCATCGATCTTGATTGATTTGAAGCTAGATGGCGGAGGAGGCGAAGAAGGTGGAGGTGACCAAGGACATCGCCGAAGAGAAGGCAGTNGTGCCGCTGCCGACGCCGCCGGCCACC ]
[+] EMBL OSR13391A [ TTTGGCGATACCATTTGCATTGCTTGCCCAGCATCGTCGTCGTCGTCGTCGGGAGCAAGGAGGAGGAGAGACCATCGATCTTGATTGATTTGAAGCTAGATGGCGGAGGAGGCGAAGAAGGTGGAGGTGACCAAGGACATCGCCGAAGAGAAGGCAGTGGTGCCGCTGCCGACGCCGCCGGCCACCGAGCACGACGACTCCAAGGCCATCGTCCTCGTCAAGGAAGCTGA GGCTACAGGAGGTTCAGCTGAAAGAGATGC TTATCTCGC AAAAATTGTGT CGGAG AAGAGATTGGTAC TGAT CAATGCCTGGGAGG AAAGCGAG AAAGC TAGAGCAGAGAACA GGGCGGCCAAGAAGCTGTC ]
[+] EMBL OSS3846A [ CGTCGTCGTCGTCGTCGGGAGCAAGGAGGAGGAGAGACCATCGATCTTNATTGATTTGAAGCTAGATGGCGGAGGAGGCGAAGAAGGTGGAGGTGACCAAGGACATCGCCGAAGAGAAGGCANTGGTGCCGNTGNCGACGNCGCC GCCACCGAGCACGACGACTCCAAGGCCATCGTCCTCGTCAAGGAAGC ]
[-] EMBL CB663697 [ GGCCACCGAGCACGACGACTCCAAGGCCATCGTCCTCGTCAAGGAAGCTGA GGCTACAGGAGGTTCAGCTGAAAGAGATGC TTATCTTGC AAAAATTGTGT CGGAG AAGAGATTGGTAC TGAT CAATGCCTGGGAGG AAAGCGAG AAAGC TAGAGCAGAGAACA GGGCGGCCAAGAAGCTGTCATACATCACTTCA T GGGA GAATG CAAAGAAAGCAGAGATGGAGGGTGAGCTGAAAAGGATCGAGCAAGATCTGGAGAAGAAGAAGGCGGCGTACGAAGAGAAGCTGAAGAACAAGCTGGCATTGCTGCACAAGACGGCGGAGGAGAAGAGGGCGCTCACCTCGGCGAAGCGTGGCGAGGAGCTGATCATGGCGGAGGAGATGGCCGCCAAGTACCGTGCAAAGGGCGAGGCTCCGACGAAGCTGTTCGGGCTTTTGAAAGCCTGAGAGAAATCATGAGGAGTTCATCATACATATATGCTGGGATTTGGTGTTGTTGATTAGTCTGTGAACTTACAGAAATTTGTATATGTGCAATGCATGGCATCCGTGTTTGCGTCGTGTGTATGTTGTTTAATTGAAGGGCCATTTGGTTTGTATTTTGTCAGTTGGGTGGTTTGATTTTTGGTGCGTTTTGTAAAGGAATGTGTGTATATGCATAGGGGAGTGCAGGCAGGGGATGATGGATTATGAATACGCTTATT ]
[+] EMBL AU101253 [ AAGCTTAGGGCTACAGAAGGTTCAGCTGAAAGAGATGCTTTATCTCGC AAAAATTGTGT CGAAG AAGAGATTGGTACTTGATCCAATGCNTGGAAGG AAAGCGAG AAAGC TAGAGCAGAGAACA GGCGGCCAAGAAGCTGTCATACATCACTTCA T GGGA GAATG CAAAGAAAGCAGAGATGGAGGCTGAGCTGAAAAGGATCGAGCAAGAACTGGAGAAGAAGAAGGCGGCGTACGAAGAGAAGCTGAAGAACAAGCTGGCATTGCTGCACAAGACGGCGGAGGAGAAGAGGGCGCTCACCACGGCGAAGCGTGGCGAGGAGCTGATCATGGCGGAGGAGATGGCCGCCAAGTACCGTGCAAAGGGCGAGGCTCCGACGAAGCTGTTCGGGCTCTTGAAAGCCTGAGAGAAATCATGAGGAGTTCATCATACATATATGCTGGGATTTGGTGTTGTTGATTAGTCTGTGAACTTACAGAAATTTGTATATGTGCAATGCATGGCATCCGTGTTTGCGTCGTGTGTATGTCGTCTAATTGAAGGGCCATTTGGTTTGTATTTTGTCAGTTGGGTGGTTTGATTTCTGGTGCGTTTTGTAAAGGAAT TGTGTATATGCATAGGGGAGTGCAGGCAGGGGATGATGGATTATGAATACGCTTATTCTTTCATGAAGATTTGTTAGTAAAA ]
[+] EMBL AU095451 [ GATGCTTTATCTCNCAAAAAATTGTATTCCGGAG AAGAGATTGGTAC TGAT CAATGCCTGGGAGG AAAGCGAGAAAANC TAGACCAGAGAACA GGGCGNCCAAGAAGCTGTCATACATCACTTCA T GGGA GAATGCCAAAGAAAGCAGAGATGGAGGCTGAGCTGAAAAGGATCGAGCAAGAACTGGAGAAGAAGAAGGCGGCGTACGAAGAGAAGCTGAAGACCAAGCTGGCATTGCTGCACAAGACGNCGGAGGAGAAGAGGGCGCTCACCACGGCGAAGCGTGGCGAGGAGCTGATCATGGCGGAGGAGATGGCCGCCAAGTACCGTGCAAAGGGCGAGGNTCCGACGAAGCTGTTCGGGCTCTTGAAAGCCTGAGAGAAANCATGAGGAGTTCATCATACATATATGCTGGGATTTGGTGTTGTTGATTAGTCTGTGAACTTACAGAAATTTGTATATGTGCAATGCATGGCATCCGTGTTTGCGTCGTGTGTATGTCGTCTAATTGAAGGGCCATTTGGTTTGTATTTTGTCAGTTGGGTGGTTTGATTTCTGGTGCGTTTTGTAAAGGAAT TGTGTATATGCATAGGGGAGTGCAGGCAGGGGATGATGGATTATGAATACGCTTATTCTTTCATGAAGATTTGTTAGTAATTAAACATTCGTTAATTGTTGTATTTTTTTCAAAAA]
[+] EMBL AU183035 [ ATTGCTGCACAAGACGGCGGAGGAGAAGAGGGCGCTCACCACGGCGAAGCGTGGCGAGGAGCTGATCATGGCGGAGGAGATGGCCGCCAAGTACCGTGCAAAGGGCGAGGCTCCGACGAAGCTGTTCGGGCTCTTGAAAGCCTGAGAGAAATCATGAGGAGTTCATCATACATATATGCTGGGATTTGGTGTTGTTGATTAGTCTGTGAACTTACAGAAATTTGTATATGTGCAATGCATGGCATCCGTGTTTGCGTCGTGTGTATGTCGTCTAATTGAAGGGCCATTTGGTTTGTATTTTGTCAGTTGGGTGGTTTGATTTCTGGTGCGTTTTGTAAAGGAAT TGTGTATATGCATAGGGGAGTGCAGGCAGGGGATGATGGATTATGAATACGCTTATTCTTTCATGAAGATTTGTTAGTAAAA ]
[+] EMBL AU108420 [ GAAGCTGTTCGGGCTCTTGAAAGCCTGAGNGAAATCATGAGGAGTTCATCATNCATATNTGCTGGGATTTGGTGTTGTTGATTAGTCTGTGAACTTACAGAAATTTGTATATGTGCAATGCATGGCATCCGTGTTTGCGTCGTGTGTATGTCGTCTAATTGAAGGGCCATTTGGTTTGTATTTTGTCAGTTGGGTGGTTTGATTTCTGGTGCGTTTTGTAAAGGAAT TGTGTATATGCATAGGGGAGTGCAGGCAGGGGATGATGGATTATGAATAaaaaaa ]
consensusID : consensus_14245#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 154 fasta sequence
[ATAGGGGAGTGCAGGCAGGGGATGANGGATTATGAATACGCTTATTNTTTCNTGAAGATTTNTTNGTAATTAAACATTCGTTNATTGTTGTATTTTTTTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU097060 [ATAGGGGAGTGCAGGCAGGGGATGANGGATTATGAATACGCTTATTNTTTCNTGAAGATTTNTTNGTAATTAAACATTCGTTNATTGTTGTATTTTTTTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_14245#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 115 fasta sequence
[GGTCACACTCCACACTTCTTCGCACTCCTCCAGCCATCTAGCTTCAAATCAATCAAGATCGATGGTCTCTCCTCCTCNTTGCTCCCGACGACGACGACGACGATCTAGTTCTAGA]
[+] EMBL BI807131 [GGTCACACTCCACACTTCTTCGCACTCCTCCAGCCATCTAGCTTCAAATCAATCAAGATCGATGGTCTCTCCTCCTCNTTGCTCCCGACGACGACGACGACGATCTAGTTCTAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14245#0 TGTCCATCACAATTGCTAATTAACTAAGACACCCTTCCTTGATTGTGACACTAGCACGAC 60
consensus_14245#1 ------------------------------------------------------------
consensus_14245#2 ------------------------------------------------------------
consensus_14245#0 GCACTTTCCTCTATATACATATACATATATCCTCCTTCCGTCCAGCTAACGGTTTATATG 120
consensus_14245#1 ------------------------------------------------------------
consensus_14245#2 ------------------------------------------------------------
consensus_14245#0 CTTAGCTAGCTGTTTGTTTTGGCGATACCATTTGCATTGCTTGCCCAGCATCGTCGTCGT 180
consensus_14245#1 ------------------------------------------------------------
consensus_14245#2 ------------------------------------------------------------
consensus_14245#0 CGTCGTCGGGAGCAAGGAGGAGGAGAGACCATCGATCTTGATTGATTTGAAGCTAGATGG 240
consensus_14245#1 ------------------------------------------------------------
consensus_14245#2 ------------------------------------------------------------
consensus_14245#0 CGGAGGAGGCGAAGAAGGTGGAGGTGACCAAGGACATCGCCGAAGAGAAGGCAGTGGTGC 300
consensus_14245#1 ------------------------------------------------------------
consensus_14245#2 ------------------------------------------------------------
consensus_14245#0 CGCTGCCGACGCCGCCGGCCACCGAGCACGACGACTCCAAGGCCATCGTCCTCGTCAAGG 360
consensus_14245#1 ------------------------------------------------------------
consensus_14245#2 ------------------------------------------------------------
consensus_14245#0 AAGCTGAGGCTACAGGAGGTTCAGCTGAAAGAGATGCTTATCTCGCAAAAATTGTGTCGG 420
consensus_14245#1 ------------------------------------------------------------
consensus_14245#2 ------------------------------------------------------------
consensus_14245#0 AGAAGAGATTGGTACTGATCAATGCCTGGGAGGAAAGCGAGAAAGCTAGAGCAGAGAACA 480
consensus_14245#1 ------------------------------------------------------------
consensus_14245#2 ------------------------------------------------------------
consensus_14245#0 GGGCGGCCAAGAAGCTGTCATACATCACTTCATGGGAGAATGCAAAGAAAGCAGAGATGG 540
consensus_14245#1 ------------------------------------------------------------
consensus_14245#2 ------------------------------------------------------------
consensus_14245#0 AGGCTGAGCTGAAAAGGATCGAGCAAGAACTGGAGAAGAAGAAGGCGGCGTACGAAGAGA 600
consensus_14245#1 ------------------------------------------------------------
consensus_14245#2 ------------------------------------------------------------
consensus_14245#0 AGCTGAAGAACAAGCTGGCATTGCTGCACAAGACGGCGGAGGAGAAGAGGGCGCTCACCA 660
consensus_14245#1 ------------------------------------------------------------
consensus_14245#2 ------------------------------------------------------------
consensus_14245#0 CGGCGAAGCGTGGCGAGGAGCTGATCATGGCGGAGGAGATGGCCGCCAAGTACCGTGCAA 720
consensus_14245#1 ------------------------------------------------------------
consensus_14245#2 ------------------------------------------------------------
consensus_14245#0 AGGGCGAGGCTCCGACGAAGCTGTTCGGGCTCTTGAAAGCCTGAGAGAAATCATGAGGAG 780
consensus_14245#1 ------------------------------------------------------------
consensus_14245#2 ------------------------------------------------------------
consensus_14245#0 TTCATCATACATATATGCTGGGATTTGGTGTTGTTGATTAGTCTGTGAACTTACAGAAAT 840
consensus_14245#1 ------------------------------------------------------------
consensus_14245#2 ------------------------------------------------------------
consensus_14245#0 TTGTATATGTGCAATGCATGGCATCCGTGTTTGCGTCGTGTGTATGTCGTCTAATTGAAG 900
consensus_14245#1 ------------------------------------------------------------
consensus_14245#2 ------------------------------------------------------------
consensus_14245#0 GGCCATTTGGTTTGTATTTTGTCAGTTGGGTGGTTTGATTTCTGGTGCGTTTTGTAAAGG 960
consensus_14245#1 ------------------------------------------------------------
consensus_14245#2 ------------------------------------------------------------
consensus_14245#0 AATTGTGTATATGCATAGGGGAGTGCAGGCAGGGGATGATGGATTATGAATACGCTTATT 1020
consensus_14245#1 --------------ATAGGGGAGTGCAGGCAGGGGATGANGGATTATGAATACGCTTATT 46
consensus_14245#2 ----------------------------------GGTCACACTCCACACTTCTTCGCACT 26
* * * * * * * *
consensus_14245#0 CTTTCATGAAGATTTGTT--AGTAAAAAAACATTCGTTAATTGTTGTATTTTTTTCAAAA 1078
consensus_14245#1 NTTTCNTGAAGATTTNTT--NGTAATTAAACATTCGTTNATTGTTGTATTTTTTTNAAAA 104
consensus_14245#2 CCTCCAGCCATCTAGCTTCAAATCAATCAAGATCGATGGTCTCTCCTCCTCNTTGCTCCC 86
* * * * ** * * ** ** * * * * * **
consensus_14245#0 A------------------------------------------------- 1079
consensus_14245#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 154
consensus_14245#2 GACGACGACGACGACGATCTAGTTCTAGA--------------------- 115
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||