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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14247#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 3025 fasta sequence
[AGTCATTTAGGGCTAATGAAGCAATCGATCTTAGTGCAGGTCCATCTACATGTGCTAATTATTACAGCAAGACAGAGAGAAGTACACACAAGGCTCCATCTTACGAGAGATCTCATAGTGGGAACAAGAAATCGAGAGCAGGTGGTGCTATCCCTGAAGGAGATGTTAATGCTTCATCACAGGCTGCAGTTGCACGTGTTGTTAGGCAGCAGGGCATCGAAATCCCTGTTGATGCAGATGGTTTTATTGAAGTAAGGTCTAAGAGGCAGATCATGAGTGTCAGGAGAGAACTGAGGGAGAAAGAAAATAGATCCAAGATGAGGATAGCAAAGGCTCCCCGCAAACAGCATCAAGTTTCTCTGCACAGTTCTAGTAGTCCAAATTTGAACAAGGGAACTGTTTCTTTGGCAGAACCTGCAAAGAAAGCTTCTTTGGATTCTGTCATGGCTGTTGAAAGCAGAATCATTGACCCTGCTGAATCATCTGTTGCACTAAAGGGTGATAAAGCTTCCATGACACCCATAGGGCAACCTTTGGTCAACGCAGAATCTCATACAAACTACTACGCAAAGAAGCCTATCAATAGCCAGCCATCCTCAGATGCGGTCAATTCAGGAAAGCTCGTGACAAGCCTATCTGAAGAAAACAATAAAACGATGCCCATTAGCACTCCATTTAACATAGGCACCTGGGATAATTCACAATTAAACCAGCAGGTTATGCCATTAACTCAAACTCAACTTGAAGAAGCTATGAAACCAGGGAAGTTTGAACAAGCTGGTTCTGGCTTTTCTTTGGAGCCCAACAATGCTCTGTCTCCCACACTAGGTTCTGAAAAAACATTCCCTTCATCTGCTAGCCCTATTAATTCCCTTCTTGCCGGGGAGAAGATTCAGTTTGGAGCAGTTACCTCACCAACTGTACTGCCTCCAGTCAGCCGAACTATTACAAGTGGGCTTGGTCCTCCAGGTTCATCTAGGCCTGATATGAAGATTCATCGCAACTTGCCTGGTGATAGCAATAGTACTGCCATTTTGTTTGATAAGGAGACGTCTACAACAAAGGAACCATCACCAAACTCCGATGATGTTGAAGCTGAAGCTGAGGCTGAAGCAGCTGCCTCTGCTGTAGCTGTTGCAGCTATTAGTAGTGATGAGATAGTTGGATCTGGAGCTGATGCAACGGCAGCTTCTGCTTCAGACAACAAAAGTTTCGGCAATAAGAATCTTGCTGGATTAGCATCAGGAGGTCAATCATCCACAGATGAACCACTCAGCGTCGCTCTTCCAGCAGACTTGTCAGTTGATACTCCACCAATGTCCCTGTGGCACCCTCTGCCAAGTCCACAGGCATCAGGACCGATGCTTTCTCAATTTCCTGGTGCACAGCCATCCCACTTTTCCTGCTTTGAGATGAACACAATGTTAGGAGGGCAGATTTTTGCATTTGGACCAAGTGATGAATGTGCTGGTTCTCAGGTTCAGCAGCCTCAAAGAAGCAATGCTTTACCTTCAGCACCATTGGGAGCTTGGCCACAATGCCACTCTGGGGTTGAGTCATTTTATCGTCCTCCCACTGGGTTTGCTGGTCCTTTCATTAGCCCTGGAGGGATACCAGGCGTACAAGGTCCTCCACATATGGTGGTCTACAATCACTTTGCTCCTGTAGGGCAGTTTAGTCAAATGGGACTTGGTTTCATGGGAACCACTTATATTTCTGGTGACAAGCAGCCTGACTGGAAGCAAAACCAAGGACCTCCGGTTGTTGGTGTTAGCCAGAGTGATCCAAACAACCAAAATATGGTACCTGGTCAAGTAAGCTCGCCCAGTGTTCCTACTCCAGTACAGCATCTACGCCCAACCTCCATCATGCCAATTCCATCTCCACTGACCATGTTTGATATTGCTCCATTCCAGTCATCTACAGATATACAGATGCAGCCTTGTTGGCCACATATGCCTGTAGCACCACTACACACCGTCCCATTATCAGTGCCACTACAGCAGCATCCAATGGACGGCACAGCTGCAGCGCAGTTTGTTCATAACATCCAAGTGGACAACAAAGCGAGTTCGAATAACCGGTTCCAGGAGCCCTCTGCTTCTGTTGTTCCAGCAGATAACAGCAAGAACATTCCAAATGCATCTGCTACTCAGTTTACAGATGATTTAGGCCTTGTTGAACAGCCAGCCTCCACAAGTTCAAATGCTCAAACTGTTCAGCCTTCGTTTGCCCGGGTAGGCATGATCAGCAATGAAGTCCCAAACAGTGCCAAAGTTATGGGTAGGTCGTCGAACACACCAAATGTTAACCCTGGGATTGCTACAGGGGTCAGCAACTCAAATGGAAGTCAGGTTGCCAGCAT-GCCTTCCAAGCCCCACCAATCTTCATCATCATCGGGTCAACAGTACCAACATCAAGTTAATAATCAAGATCGTC-GGTCTCGGGTGACCCAAAAGACTGGAGCTGTCAATGAATGGCAACGCCGTTCAGGATACCAGGGAAGGAATCAAAATTCCGGTTCTGACAAGAACTTGGGCACTGGTAGGATGAAGCAGATCTATGTTGCAAAATCATCATCAGCAAGTGGCCATGCCCCATCTGGTTAGAAGCACAAATGCTCTTTTGCAAAGCCTGCGTCAATCAGGAGGCCGCAACAGCTCGACTCGAGCATATTTGCACCAGACACATGCGAAATGTGTTGTCACTCCATGTCTGTCTATCCTTTTTGTTTTCTTTGGCGATTATAGCCTGTGCTGATCATTTATCTATTTTTGGTTCATTGTCTTGCATAGAGAAAAGAAAAAGGTAGTGTGGTTGCAGTGTCAAAACTTTATAGTGATATCGTGACATGCCTGGATAAAATTTGCAACCTTCAAAATATGCTGTTGTGTAAGTCGATGGTGTGCCGTCTGAATTGTTAATACTATTATCATTATCATTATTA-TTTTTCCGGA-C-TCTGGAGGTTTAAACAGCCTCGGAGATTGCTATAATAGGGATGAAAACATGCCCCTGTAAAAGAGAA]
[+] EMBL CB638306 [AGTCATTTAGGGCTAATGAAGCAATCGATCTTAGTGCAGGTCCATCTACATGTGCTAATTATTACAGCAAGACAGAGAGAAGTACACACAAGGCTCCATCTTACGAGAGATCTCATAGTGGGAACAAGAAATCGAGAGCAGGTGGTGCTATCCCTGAAGGAGATGTTAATGCTTCATCACAGGCTGCAGTTGCACGTGTTGTTAGGCAGCAGGGCATCGAAATCCCTGTTGATGCAGATGGTTTTATTGAAGTAAGGTCTAAGAGGCAGATCATGAGTGTCAGGAGAGAACTGAGGGAGAAAGAAAATAGATCCAAGATGAGGATAGCAAAGGCTCCCCGCAAACAGCATCAAGTTTCTCTGCACAGTTCTAGTAGTCCAAATTTGAACAAGGGAACTGTTTCTTTGGCAGAACCTGCAAAGAAAGCTTCTTTGGATTCTGTCATGGCTGTTGAAAGCAGAATCATTGACCCTGCTGAATCATCTGTTGCACTAAAGGGTGATAAAGCTTCCATGACACCCATAGGGCAACCTTTGGTCAACGCAGAATCTCATACAA ]
[+] EMBL AK063311 [ CCGCAAACAGCATCAAGTTTCTCTGCACAGTTCTAGTAGTCCAAATTTGAACAAGGGAACTGTTTCTTTGGCAGAACCTGCAAAGAAAGCTTCTTTGGATTCTGTCATGGCTGTTGAAAGCAGAATCATTGACCCTGCTGAATCATCTGTTGCACTAAAGGGTGATAAAGCTTCCATGACACCCATAGGGCAACCTTTGGTCAACGCAGAATCTCATACAAACTACTACGCAAAGAAGCCTATCAATAGCCAGCCATCCTCAGATGCGGTCAATTCAGGAAAGCTCGTGACAAGCCTATCTGAAGAAAACAATAAAACGATGCCCATTAGCACTCCATTTAACATAGGCACCTGGGATAATTCACAATTAAACCAGCAGGTTATGCCATTAACTCAAACTCAACTTGAAGAAGCTATGAAACCAGGGAAGTTTGAACAAGCTGGTTCTGGCTTTTCTTTGGAGCCCAACAATGCTCTGTCTCCCACACTAGGTTCTGAAAAAACATTCCCTTCATCTGCTAGCCCTATTAATTCCCTTCTTGCCGGGGAGAAGATTCAGTTTGGAGCAGTTACCTCACCAACTGTACTGCCTCCAGTCAGCCGAACTATTACAAGTGGGCTTGGTCCTCCAGGTTCATCTAGGCCTGATATGAAGATTCATCGCAACTTGCCTGGTGATAGCAATAGTACTGCCATTTTGTTTGATAAGGAGACGTCTACAACAAAGGAACCATCACCAAACTCCGATGATGTTGAAGCTGAAGCTGAGGCTGAAGCAGCTGCCTCTGCTGTAGCTGTTGCAGCTATTAGTAGTGATGAGATAGTTGGATCTGGAGCTGATGCAACGGCAGCTTCTGCTTCAGACAACAAAAGTTTCGGCAATAAGAATCTTGCTGGATTAGCATCAGGAGGTCAATCATCCACAGATGAACCACTCAGCGTCGCTCTTCCAGCAGACTTGTCAGTTGATACTCCACCAATGTCCCTGTGGCACCCTCTGCCAAGTCCACAGGCATCAGGACCGATGCTTTCTCAATTTCCTGGTGCACAGCCATCCCACTTTTCCTGCTTTGAGATGAACACAATGTTAGGAGGGCAGATTTTTGCATTTGGACCAAGTGATGAATGTGCTGGTTCTCAGGTTCAGCAGCCTCAAAGAAGCAATGCTTTACCTTCAGCACCATTGGGAGCTTGGCCACAATGCCACTCTGGGGTTGAGTCATTTTATCGTCCTCCCACTGGGTTTGCTGGTCCTTTCATTAGCCCTGGAGGGATACCAGGCGTACAAGGTCCTCCACATATGGTGGTCTACAATCACTTTGCTCCTGTAGGGCAGTTTAGTCAAATGGGACTTGGTTTCATGGGAACCACTTATATTTCTGGTGACAAGCAGCCTGACTGGAAGCAAAACCAAGGACCTCCGGTTGTTGGTGTTAGCCAGAGTGATCCAAACAACCAAAATATGGTACCTGGTCAAGTAAGCTCGCCCAGTGTTCCTACTCCAGTACAGCATCTACGCCCAACCTCCATCATGCCAATTCCATCTCCACTGACCATGTTTGATATTGCTCCATTCCAGTCATCTACAGATATACAGATGCAGCCTTGTTGGCCACATATGCCTGTAGCACCACTACACACCGTCCCATTATCAGTGCCACTACAGCAGCATCCAATGGACGGCACAGCTGCAGCGCAGTTTGTTCATAACATCCAAGTGGACAACAAAGCGAGTTCGAATAACCGGTTCCAGGAGCCCTCTGCTTCTGTTGTTCCAGCAGATAACAGCAAGAACATTCCAAATGCATCTGCTACTCAGTTTACAGATGATTTAGGCCTTGTTGAACAGCCAGCCTCCACAAGTTCAAATGCTCAAACTGTTCAGCCTTCGTTTGCCCGGGTAGGCATGATCAGCAATGAAGTCCCAAACAGTGCCAAAGTTATGGGTAGGTCGTCGAACACACCAAATGTTAACCCTGGGATTGCTACAGGGGTCAGCAACTCAAATGGAAGTCAGGTTGCCAGCAT GCCTTCCAAGCCCCACCAATCTTCATCATCATCGGGTCAACAGTACCAACATCAAGTTAATAATCAAGATCGTC GGTCTCGGGTGACCCAAAAGACTGGAGCTGTCAATGAATGGCAACGCCGTTCAGGATACCAGGGAAGGAATCAAAATTCCGGTTCTGACAAGAACTTGGGCACTGGTAGGATGAAGCAGATCTATGTTGCAAAATCATCATCAGCAAGTGGCCATGCCCCATCTGGTTAGAAGCACAAATGCTCTTTTGCAAAGCCTGCGTCAATCAGGAGGCCGCAACAGCTCGACTCGAGCATATTTGCACCAGACACATGCGAAATGTGTTGTCACTCCATGTCTGTCTATCCTTTTTGTTTTCTTTGGCGATTATAGCCTGTGCTGATCATTTATCTATTTTTGGTTCATTGTCTTGCATAGAGAAAAGAAAAAGGTAGTGTGGTTGCAGTGTCAAAACTTTATAGTGATATCGTGACATGCCTGGATAAAATTTGCAACCTTCAAAATATGCTGTTGTGTAAGTCGATGGTGTGCCGTCTGAATTGTTAATACTATTATCATTATCATTATTA TTTTTCCGGA C TCTGGAGGTTTAAACAGCCTCGGAGATTGCTATAATAGGGATGAAAACAT ]
[+] EMBL CB628422 [ ACGCCTTATCTCATACAAACTACTACGCAAAGAAGCCTATCAATAGCCAGCCATCCTCAGATGCGGTCAATTCAGGAAAGCTCGTGACAAGCCTATCTGAAGAAAACAATAAAACGATGCCCATTAGCACTCCATTTAACATAGGCACCTGGGATAATTCACAATTAAACCAGCAGGTTATGCCATTAACTCAAACTCAACTTGAAGAAGCTATGAAACCAGGGAAGTTTGAACAAGCTGGTTCTGGCTTTTCTTTGGAGCCCAACAATGCTCTGTCTCCCACACTAGGTTCTGAAAAAGCATTCCCTTCATCTGCTAGCCCTATTAATTCCCTTCTTGCCGGGGAGAAGATTCAGTTTGGAGCAGTTACCTCACCAACTGTACTGCCTCCAGTCAGCCGAACTATTACAAGTGGGCTTGGTCCTCCAGGTTCATCTAGGCCTGATATGAAGATTGATCGCAACTTGCCTGGTGATAGCAATAGTACTGCCATTTTGTTTGATAAGGAGACGTCTACAACAAAGGAACCATCACCAAACTCCGATGATGTTGAAGCTGAAGCTGAGGCTGAAGCAGCTGCCTCTGCTGTGGCTGTTGCAGCTATTAGTAGTGATGAGATAGTTGGATCTGGAGCTGATGCAACGGCAGCTTCTGCTTCAGACAACAAAAGTTTCGGCAATAAGAATCTTGCTGGATTAGCATCAGGAGGTCAATCATCCACAGATGAACCACTCAGCGTCGCTCTTCCAGCAGACTTGTCAGTTGATACTCCACCAATGTCCCTGTGGCACCCTCTGCCAAGT ]
[+] EMBL CA755496 [ CCTTCATCTGCTAGCCCTATTAATTCCCTTCTTGCCGGGGAGAAGATTCAGTTTGGAGCAGTTACCTCACCAACTGTACTGCCTCCAGTCAGCCGAACTATTACAAGTGGGCTTGGTCCTCCAGGTTCATCTAGGCCTGATATGAAGATTCATCGCAACTTGCCTGGTGATAGCAAGAGTACTGCCATTTTGTTTGATAAGGAGACGTCTACNACAAAGGAACCATCACCAAACTCCGATGATGTTGAAGCTGAAGCTGAGGCTGAAGCAGCTGCCTCTGCTGTAGCTGTTGCAGCTATTAGTAAGGATGAGATAGTTGGAGCTGGAGCTGATGCAACGGCAGCTTCTGCTTCAGACAACAAAAGTTTCGGCAATAAGAATCTTGCTGGATTAGCATCAGGAGGTCAATCATCCACAGATGAACCACTCAGCGTCGCTCTTCCAGCAGACTTGTCAGTTGATACTCCACCAATGTCCCTGTGGCACCCTCTGCCAAGTCCACAGGCATCAGGACCGATGCTTTCTCAATTTCCTGGTGCACAGCCATCCCACTTTTCCTGCTTTGAGATG ACACAATGTTAGGAGGGCAGA TTTTGCATTTGGACC AGTGA ]
[+] EMBL CF322610 [ ATTTCCTGGTGCACAGCCATCCCACTTTTCCTGCTTTGAGATGAACACAATGTTAGGAGGGCAGATTTTTGCATTTGGACCAAGTGATGAATGTGCTGGTTCTCAGGTTCAGCAGCCTCAAAGAAGCAATGCTTTACCTTCAGCACCATTGGGAGCTTGGCCACAATGCCACTCTGGGGTTGAGTCATTTTATCGTCCTCCCACTGGGTTTGCTGGTCCTTTCATTAGCCCTGGAGGGATACCAGGCGTACAAG ]
[+] EMBL CF311276 [ ATGCCAATTCCATCTCCACTGACCATGTTTGATATTGCTCCATTCCAGTCATCTACAGATATACAGATGCATCCTTGTTGGCCACATATGCCTGTAGCACCACTACACACCGTCCCATTATCAGTGCCACTACAGCAGCATCCAATGGACGGCACAGCTGCAGCGCAGTTTGTTCATAACATCCAAGTGGACAACAAAGCGAGTTCGAATAACCGGTTCCAGGAGCCCTCTGCTTCTGTTGTTCCAGCAGATAACAGCATGAACATTCCAAATGCATCTGCTACTCAGTTTACAGATGATTTAGGCCTTGTTGAACAGCCAGCCTCCACAAGTTCAAATGCTCAAACTGTTCAGCCTTCGTTTGCCCGGGTAGGCATGATCAGCAATGAAGTCCCAAACAGTGCCAAAGTTATGGGTAGGTCGTCGAACACACCAAATGTTAACCCTGGGATTGCTACAGGGGTCAGCAACTCAAATGGAAGTCAGGTTGCCAGCAT GCCTTCCAAGCCCCACCAATCTTCATCATCATCGGGTCAACAGTACCAACATCAAGTTAATAATCAAGATCGTC GGTCTCGGGTGACCCAAAAGACTGGAGCTGTCAATGAATGGC ]
[-] EMBL CB628423 [ CAGCAAGAACATTCCAAATGCATCTGCTACTCGGTTCACAGATGATTTAGGCCTTGTTGAACAGCCAGCCTCCACAAGTTCAAATGCTCAAACTGTTCAGCCTTCGTTTGCCCGGGTAGGCATGATCAGCAATGAAGTCCCAAACAGTGCCAAAGTTATGGGTAGGTCGTCGAACACACCAAATGTTAACCCTGGGATTGCTACAGGGGTCAGCAACTCAAATGGAAGTCAGGTTGCCAGCAT GCCTTCCAAGCCCCACCAATCTTCATCATCATCGGGTCAACAGTACCAACATCAAGTTAATAATCAAGATCGTC GGTCTCGGGTGACCCAAAAGACTGGAGCTGTCAATGAATGGCAACGCCGTTCAGGATACCAGGGAAGGAATCAAAATTCCGGTTCTGACAAGAACTTGGGCACTGGTAGGATGAAGCAGATCTATGTTGCAAAATCATCATCAGCAAGTGGCCATGCCCCATCTGGTTAGAAGCACAAATGCTCTTTTGCAAAGCCTGCGTCAATCAGGAGGCCGCAACAGCTCGACTCGAGCATATTTGCACCAGACACATGCGAAATGTGTTGTCACTCCATGTCTGTCTATCCTTTTTGTTTTCTTTGGCGATTATAGCCTGTGCTGATCATTTATCTATTTTTGGTTCATTGTCTTGCATAGAGAAAAGAAAAAGGGAGTGTGGTTGCAGTGTCAAAACTTTATAGTGATATCGTGACATGCCTGGATAAAATTTGCAACCTTCAAAATATGCTGTTGTGTAAGTCGATGGTGTGCCGTCTGAATTGTTAATACTATTATCATTATCATTATTA TTTTTCCGGAGC TCTGGAGGTTTAAACAGCCTCGGAGATTGCTA ]
[-] EMBL CB664100 [ CTACAGGGGTCAGCAACTCAAATGGAAGTCAGGTTGCCAGCAT GCCTTCCAAGCCCCACCAATCTTCATCATCATCGGGTCAACAGTACCAACATCAAGTTAATAATCAAGATCGTC GGTCTCGGGTGACCCAAAAGACTGGAGCTGTCAATGAATGGCAACGCCGTTCAGGATACCAGGGAAGGAATCAAAATTCCGGTTCTGACAAGAACTTGGGCACTGGTAGGATGAAGCAGATCTATGTTGCAAAATCATCATCAGCAAGTGGCCATGCCCCATCTGGTTAGAAGCACAAATGCTCTTTTGCAAAGCCTGCGTCAATCAGGAGGCCGCAACAGCTCGACTCGAGCATATTTGCACCAGACACATGCGAAATGTGTTGTCACTCCATGTCTGTCTATCCTTTTTGTTTTCTTTGGCGATTATAGCCTGTGCTGATCATTTATCTATTTTTGGTTCATTGTCTTGCATAGAGAAAAGAAAAAGGTAGTGTGGTTGCAGTGTCAAAACTTTATAGTGATATCGTGACATGCCTGGATAAAATTTGCAACCTTCAAAATATGCTGTTGTGTAAGTCGATGGTGTGCCGTCTGAATTGTTA ]
[+] EMBL CA998424 [ GGTTGCCAGCATGGCCTTCCAAGCCCCACCAATCTTCATCATCATCGGGTCAACAGTACCAACATCAAGTTAATAATCAAGATCGTC GGTCTCGGGTGACCCAAAAGACTGGAGCTGTCAATGAATGGCAACGCCGTTCAGGATACCAGGGAAGGAATCAAAATTCCGGTTCTGACAAGAACTTGGGCACTGGTAGGATGAAGCAGATCTATGTTGCAAAATCATCATCAGCAAGTGGCCATGCCCCATCTGGTTAGAAGCACAAATGCTCTTTTGCAAAGCCTGCGTCAATCAGGAGGCCGCAACAGCTCGACTCGAGCATATTTGCACCAGACACATGCGAAATGTGTTGTCACTCCATGTCTGTCTATCCTTTTTGTTTTCTTTGGCGATTATAGCCTGTGCTGATCATTTATCTATTTTTGGTTCATTGTCTTGCATAGAGAAAAGAAAAAGGGAGTGTGGTTGCAGTGTCAAAACTTTATAGTGATATCGTGACATGCCTGGATAAAATTTGCA ]
[-] EMBL CF311277 [ CGGGTCAACAGTACCAACATCAAGTTAATAATCAAGATCGTC GGTCTCGGGTGACCCAAAAGACTGGAGCTGTCAATGAATGGCAACGCCGTTCAGGATACCAGGGAAGGAATCAAAATTCCGGTTCTGACAAGAACTTGGGCACTGGTAGGATGAAGCAGATCTATGTTGCAAAATCATCATCAGCAAGTGGCCATGCCCCATCTGGTTAGAAGCACAAATGCTCTTTTGCAAAGCCTGCGTCAATCAGGAGGCCGCAACAGCTCGACTCGAGCATATTTGCACCAGACACATGCGAAATGTGTTGTCACTCCATGTCTGTCTATCCTTTTTGTTTTCTTTGGCGATTATAGCCTGTGCTGATCATTTATCTATTTTTGGTTCATTGTCTTGCATAGAGAAAAGAAAAAGGTAGTGTGGTTGCAGTGTCAAAACTTTATAGTGATATCGTGACATGCCTGGATAAAAaaaa ]
[-] EMBL CB677926 [ AATCAAGATCGTCGGGTCTCGGGTGACCCAAAAGACTGGAGCTGTCAATGAATGGCAACGCCGTTCAGGATACCAGGGAAGGAATCAAAATTCCGGTTCTGACAAGAACTTGGGCACTGGTAGGATGAAGCAGATCTATGTTGCAAAATCATCATCAGCAAGTGGCCATGCCCCATCTGGTTAGAAGCACAAATGCTCTTTTGCAAAGCCTGCGTCAATCAGGAGGCCGCAACAGCTCGACTCGAGCATATTTGCACCAGACACATGCGAAATGTGTTGTCACTCCATGTCTGTCTATCCTTTTTGTTTTCTTTGGCGATTATAGCCTGTGCTGATCATTTATCTATTTTTGGTTCATTGTCTTGCATAGAGAAAAGAAAAAGGTAGTGTGGTTGCAGTGTCAAAACTTTATAGTGATATCGTGACATGCCTGGATAAAATTTGCAACCTTCAAAATATGCTGTTGTGTAAGTCGATGGTGTGCCGTCTGAATTGTTAATACTATTATCATTATCATTATTA TTTTTCCGGA C TCTGGAGGTTTAAACAGCCTAGGAGATTGCTATAATAGGGATGAAAACATGCCCCTGTAAAAGAGAA]
[-] EMBL CB638307 [ CAACGCCGTTCAGGATACCAGGGAAGGAATCAAAATTCCGGTTTTGACAAGAACTTGGGCACTGGTAGGATGAAGCAGATTTATGTTGCAAAATCATCATCAGCAAGTGGCCATGCCCCATCTGGTTAGAAGCACAAATGCTTTTTTGCAAAGCCTGGGTCAATCAGGAGGCCGCAACAGCTCGACTCGAGCATATTTGCACCAGACACATGCGAAATGTGTTGTCACTCCATGTCTGTCTATCCTTTTTGTTTTCTTTGGCGATTATAGCCTGTGCTGATCATTTATCTATTTTTGGTTCATTGTCTTGCATAGAGAAAAGAAAAAGGTAGTGTGGTTGCAGTGTCAAAACTTTATAGTGATATCGTGACATGCCTGGATAAAATTTGCAACCTTCAAAATATGCTGTTGTGTAAGTCGATGGTGTGCCGTTTGAATTGTTAATACTATTATCATTATCATTATTATTTTTTCCGGA CTTCTGGAGGTTTAAACAGCCTCGGAGATTGCTATAATAGGGATGAAAACA ]
consensusID : consensus_14247#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 491 fasta sequence
[ACCCGTTCAGGATACCACGGGAAGGAATCCAAATTCCGGTTCTGACACAGAACTTGGGCACTGGTAGGATGAACCAGATCTATGTTGCCAAATCATCATCAGCAAGTGGCCATGCCCCATCTGGTTAGAAGCCCCAATGCTCTTTTGCACAAGCCTGCGTCCATCACGGAGGCCGCAACAGCTCGACTCGAGCATATTTGCACCAGACACCACTGCGAAATGTGTTGTCACTCCATGTCTGTCTATCCTTTTTGTNTTCTTTGGCGATTATAGCCTGTGCTGATCACTTTATCTATTTTTGGTTCACTTGTCTTGCANTAGAGAAAAGAAAAAGGGAGTGTGGTTGCCACGTGTCCAAACTTTATAGTGATATTCGTGACCACTGCCTGGATAAAATTTGCACCTTCCAAATATGCTGTTGTGTAAGTCGATGGTGTGCCGTCTGAATTGTTAATACTATTATCATTATCATTATTATTACAAAAAAAAAA]
[+] EMBL BM421844 [ACCCGTTCAGGATACCACGGGAAGGAATCCAAATTCCGGTTCTGACACAGAACTTGGGCACTGGTAGGATGAACCAGATCTATGTTGCCAAATCATCATCAGCAAGTGGCCATGCCCCATCTGGTTAGAAGCCCCAATGCTCTTTTGCACAAGCCTGCGTCCATCACGGAGGCCGCAACAGCTCGACTCGAGCATATTTGCACCAGACACCACTGCGAAATGTGTTGTCACTCCATGTCTGTCTATCCTTTTTGTNTTCTTTGGCGATTATAGCCTGTGCTGATCACTTTATCTATTTTTGGTTCACTTGTCTTGCANTAGAGAAAAGAAAAAGGGAGTGTGGTTGCCACGTGTCCAAACTTTATAGTGATATTCGTGACCACTGCCTGGATAAAATTTGCACCTTCCAAATATGCTGTTGTGTAAGTCGATGGTGTGCCGTCTGAATTGTTAATACTATTATCATTATCATTATTATTACAAAAAAAAAA]
consensusID : consensus_14247#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 482 fasta sequence
[AAGTTAATAATCAAGATCGTCGGTCTCGGGTGACCCAAAAGACTGGAGCTGTCAATGAATGGCAACGCCGTTCAGGATACCAGGGAAGGAATCAAAATTCCGGTTCTGACAAGAACTTGGGCACTGGTAGGATGAAGCAGATCTATGTTGCAAAATCATCATCAGCAAGTGGCCATGCCCCATCTGGTTAGAAGCACAAATGCTCTTTTGCAAAGCCTGCGTCAATCAGGAGGCCGCAACAGCTCGACTCGAGCATATTTGCACCAGACACATGCGAAATGTGTTGTCACTCCATGTCTGTCTATCCTTTTTGTTTTCTTTGGCGATTATAGCCTGTGCTGATCATTTATCTATTTTTGGTTCATTGTCTTGCATAGAGAAAAGAAAAAGGTAGTGTGGTTGCAGTGTCAAAACTTTATAGTGATATCGTGACATGCCTGGATAAAATTTGCAACCTGCAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CA882858 [AAGTTAATAATCAAGATCGTCGGTCTCGGGTGACCCAAAAGACTGGAGCTGTCAATGAATGGCAACGCCGTTCAGGATACCAGGGAAGGAATCAAAATTCCGGTTCTGACAAGAACTTGGGCACTGGTAGGATGAAGCAGATCTATGTTGCAAAATCATCATCAGCAAGTGGCCATGCCCCATCTGGTTAGAAGCACAAATGCTCTTTTGCAAAGCCTGCGTCAATCAGGAGGCCGCAACAGCTCGACTCGAGCATATTTGCACCAGACACATGCGAAATGTGTTGTCACTCCATGTCTGTCTATCCTTTTTGTTTTCTTTGGCGATTATAGCCTGTGCTGATCATTTATCTATTTTTGGTTCATTGTCTTGCATAGAGAAAAGAAAAAGGTAGTGTGGTTGCAGTGTCAAAACTTTATAGTGATATCGTGACATGCCTGGATAAAATTTGCAACCTGCAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU032079 [ AATCAAGATCGTCGGTCTCGGGTGACCCAAAAGACTGGAGCTGTCAATGAATGGCAACG CGTTCAGGATACCAGGGAAGNAATCAAAATTCCGGTTCTGACAAGAACTTNGGCACTGGTAGGATGAAGCAGATCTATGTTGCAAAATCATCATCAGCAAGTGGCCATGCCCCATCTGGTTAGAAGCACAAATGCTCTTTTNCAAAGCCTGCGTCAATCAGGNGGCCGCAACAGCTCGACTCGAGCATATTTGCACCAGACACATGCGAAATGTGTTGTCACTCCATGTCT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14247#0 AGTCATTTAGGGCTAATGAAGCAATCGATCTTAGTGCAGGTCCATCTACATGTGCTAATT 60
consensus_14247#2 ------------------------------------------------------------
consensus_14247#1 ------------------------------------------------------------
consensus_14247#0 ATTACAGCAAGACAGAGAGAAGTACACACAAGGCTCCATCTTACGAGAGATCTCATAGTG 120
consensus_14247#2 ------------------------------------------------------------
consensus_14247#1 ------------------------------------------------------------
consensus_14247#0 GGAACAAGAAATCGAGAGCAGGTGGTGCTATCCCTGAAGGAGATGTTAATGCTTCATCAC 180
consensus_14247#2 ------------------------------------------------------------
consensus_14247#1 ------------------------------------------------------------
consensus_14247#0 AGGCTGCAGTTGCACGTGTTGTTAGGCAGCAGGGCATCGAAATCCCTGTTGATGCAGATG 240
consensus_14247#2 ------------------------------------------------------------
consensus_14247#1 ------------------------------------------------------------
consensus_14247#0 GTTTTATTGAAGTAAGGTCTAAGAGGCAGATCATGAGTGTCAGGAGAGAACTGAGGGAGA 300
consensus_14247#2 ------------------------------------------------------------
consensus_14247#1 ------------------------------------------------------------
consensus_14247#0 AAGAAAATAGATCCAAGATGAGGATAGCAAAGGCTCCCCGCAAACAGCATCAAGTTTCTC 360
consensus_14247#2 ------------------------------------------------------------
consensus_14247#1 ------------------------------------------------------------
consensus_14247#0 TGCACAGTTCTAGTAGTCCAAATTTGAACAAGGGAACTGTTTCTTTGGCAGAACCTGCAA 420
consensus_14247#2 ------------------------------------------------------------
consensus_14247#1 ------------------------------------------------------------
consensus_14247#0 AGAAAGCTTCTTTGGATTCTGTCATGGCTGTTGAAAGCAGAATCATTGACCCTGCTGAAT 480
consensus_14247#2 ------------------------------------------------------------
consensus_14247#1 ------------------------------------------------------------
consensus_14247#0 CATCTGTTGCACTAAAGGGTGATAAAGCTTCCATGACACCCATAGGGCAACCTTTGGTCA 540
consensus_14247#2 ------------------------------------------------------------
consensus_14247#1 ------------------------------------------------------------
consensus_14247#0 ACGCAGAATCTCATACAAACTACTACGCAAAGAAGCCTATCAATAGCCAGCCATCCTCAG 600
consensus_14247#2 ------------------------------------------------------------
consensus_14247#1 ------------------------------------------------------------
consensus_14247#0 ATGCGGTCAATTCAGGAAAGCTCGTGACAAGCCTATCTGAAGAAAACAATAAAACGATGC 660
consensus_14247#2 ------------------------------------------------------------
consensus_14247#1 ------------------------------------------------------------
consensus_14247#0 CCATTAGCACTCCATTTAACATAGGCACCTGGGATAATTCACAATTAAACCAGCAGGTTA 720
consensus_14247#2 ------------------------------------------------------------
consensus_14247#1 ------------------------------------------------------------
consensus_14247#0 TGCCATTAACTCAAACTCAACTTGAAGAAGCTATGAAACCAGGGAAGTTTGAACAAGCTG 780
consensus_14247#2 ------------------------------------------------------------
consensus_14247#1 ------------------------------------------------------------
consensus_14247#0 GTTCTGGCTTTTCTTTGGAGCCCAACAATGCTCTGTCTCCCACACTAGGTTCTGAAAAAA 840
consensus_14247#2 ------------------------------------------------------------
consensus_14247#1 ------------------------------------------------------------
consensus_14247#0 CATTCCCTTCATCTGCTAGCCCTATTAATTCCCTTCTTGCCGGGGAGAAGATTCAGTTTG 900
consensus_14247#2 ------------------------------------------------------------
consensus_14247#1 ------------------------------------------------------------
consensus_14247#0 GAGCAGTTACCTCACCAACTGTACTGCCTCCAGTCAGCCGAACTATTACAAGTGGGCTTG 960
consensus_14247#2 ------------------------------------------------------------
consensus_14247#1 ------------------------------------------------------------
consensus_14247#0 GTCCTCCAGGTTCATCTAGGCCTGATATGAAGATTCATCGCAACTTGCCTGGTGATAGCA 1020
consensus_14247#2 ------------------------------------------------------------
consensus_14247#1 ------------------------------------------------------------
consensus_14247#0 ATAGTACTGCCATTTTGTTTGATAAGGAGACGTCTACAACAAAGGAACCATCACCAAACT 1080
consensus_14247#2 ------------------------------------------------------------
consensus_14247#1 ------------------------------------------------------------
consensus_14247#0 CCGATGATGTTGAAGCTGAAGCTGAGGCTGAAGCAGCTGCCTCTGCTGTAGCTGTTGCAG 1140
consensus_14247#2 ------------------------------------------------------------
consensus_14247#1 ------------------------------------------------------------
consensus_14247#0 CTATTAGTAGTGATGAGATAGTTGGATCTGGAGCTGATGCAACGGCAGCTTCTGCTTCAG 1200
consensus_14247#2 ------------------------------------------------------------
consensus_14247#1 ------------------------------------------------------------
consensus_14247#0 ACAACAAAAGTTTCGGCAATAAGAATCTTGCTGGATTAGCATCAGGAGGTCAATCATCCA 1260
consensus_14247#2 ------------------------------------------------------------
consensus_14247#1 ------------------------------------------------------------
consensus_14247#0 CAGATGAACCACTCAGCGTCGCTCTTCCAGCAGACTTGTCAGTTGATACTCCACCAATGT 1320
consensus_14247#2 ------------------------------------------------------------
consensus_14247#1 ------------------------------------------------------------
consensus_14247#0 CCCTGTGGCACCCTCTGCCAAGTCCACAGGCATCAGGACCGATGCTTTCTCAATTTCCTG 1380
consensus_14247#2 ------------------------------------------------------------
consensus_14247#1 ------------------------------------------------------------
consensus_14247#0 GTGCACAGCCATCCCACTTTTCCTGCTTTGAGATGAACACAATGTTAGGAGGGCAGATTT 1440
consensus_14247#2 ------------------------------------------------------------
consensus_14247#1 ------------------------------------------------------------
consensus_14247#0 TTGCATTTGGACCAAGTGATGAATGTGCTGGTTCTCAGGTTCAGCAGCCTCAAAGAAGCA 1500
consensus_14247#2 ------------------------------------------------------------
consensus_14247#1 ------------------------------------------------------------
consensus_14247#0 ATGCTTTACCTTCAGCACCATTGGGAGCTTGGCCACAATGCCACTCTGGGGTTGAGTCAT 1560
consensus_14247#2 ------------------------------------------------------------
consensus_14247#1 ------------------------------------------------------------
consensus_14247#0 TTTATCGTCCTCCCACTGGGTTTGCTGGTCCTTTCATTAGCCCTGGAGGGATACCAGGCG 1620
consensus_14247#2 ------------------------------------------------------------
consensus_14247#1 ------------------------------------------------------------
consensus_14247#0 TACAAGGTCCTCCACATATGGTGGTCTACAATCACTTTGCTCCTGTAGGGCAGTTTAGTC 1680
consensus_14247#2 ------------------------------------------------------------
consensus_14247#1 ------------------------------------------------------------
consensus_14247#0 AAATGGGACTTGGTTTCATGGGAACCACTTATATTTCTGGTGACAAGCAGCCTGACTGGA 1740
consensus_14247#2 ------------------------------------------------------------
consensus_14247#1 ------------------------------------------------------------
consensus_14247#0 AGCAAAACCAAGGACCTCCGGTTGTTGGTGTTAGCCAGAGTGATCCAAACAACCAAAATA 1800
consensus_14247#2 ------------------------------------------------------------
consensus_14247#1 ------------------------------------------------------------
consensus_14247#0 TGGTACCTGGTCAAGTAAGCTCGCCCAGTGTTCCTACTCCAGTACAGCATCTACGCCCAA 1860
consensus_14247#2 ------------------------------------------------------------
consensus_14247#1 ------------------------------------------------------------
consensus_14247#0 CCTCCATCATGCCAATTCCATCTCCACTGACCATGTTTGATATTGCTCCATTCCAGTCAT 1920
consensus_14247#2 ------------------------------------------------------------
consensus_14247#1 ------------------------------------------------------------
consensus_14247#0 CTACAGATATACAGATGCAGCCTTGTTGGCCACATATGCCTGTAGCACCACTACACACCG 1980
consensus_14247#2 ------------------------------------------------------------
consensus_14247#1 ------------------------------------------------------------
consensus_14247#0 TCCCATTATCAGTGCCACTACAGCAGCATCCAATGGACGGCACAGCTGCAGCGCAGTTTG 2040
consensus_14247#2 ------------------------------------------------------------
consensus_14247#1 ------------------------------------------------------------
consensus_14247#0 TTCATAACATCCAAGTGGACAACAAAGCGAGTTCGAATAACCGGTTCCAGGAGCCCTCTG 2100
consensus_14247#2 ------------------------------------------------------------
consensus_14247#1 ------------------------------------------------------------
consensus_14247#0 CTTCTGTTGTTCCAGCAGATAACAGCAAGAACATTCCAAATGCATCTGCTACTCAGTTTA 2160
consensus_14247#2 ------------------------------------------------------------
consensus_14247#1 ------------------------------------------------------------
consensus_14247#0 CAGATGATTTAGGCCTTGTTGAACAGCCAGCCTCCACAAGTTCAAATGCTCAAACTGTTC 2220
consensus_14247#2 ------------------------------------------------------------
consensus_14247#1 ------------------------------------------------------------
consensus_14247#0 AGCCTTCGTTTGCCCGGGTAGGCATGATCAGCAATGAAGTCCCAAACAGTGCCAAAGTTA 2280
consensus_14247#2 ------------------------------------------------------------
consensus_14247#1 ------------------------------------------------------------
consensus_14247#0 TGGGTAGGTCGTCGAACACACCAAATGTTAACCCTGGGATTGCTACAGGGGTCAGCAACT 2340
consensus_14247#2 ------------------------------------------------------------
consensus_14247#1 ------------------------------------------------------------
consensus_14247#0 CAAATGGAAGTCAGGTTGCCAGCATGCCTTCCAAGCCCCACCAATCTTCATCATCATCGG 2400
consensus_14247#2 ------------------------------------------------------------
consensus_14247#1 ------------------------------------------------------------
consensus_14247#0 GTCAACAGTACCAACATCAAGTTAATAATCAAGATCGTCGGTCTCGGGTGACCCAAAAGA 2460
consensus_14247#2 ------------------AAGTTAATAATCAAGATCGTCGGTCTCGGGTGACCCAAAAGA 42
consensus_14247#1 ------------------------------------------------------------
consensus_14247#0 CTGGAGCTGTCAATGAATGGCAACGCCGTTCAGGATACCA-GGGAAGGAATCAAAATTCC 2519
consensus_14247#2 CTGGAGCTGTCAATGAATGGCAACGCCGTTCAGGATACCA-GGGAAGGAATCAAAATTCC 101
consensus_14247#1 ----------------------AC-CCGTTCAGGATACCACGGGAAGGAATCCAAATTCC 37
** *************** *********** *******
consensus_14247#0 GGTTCTGACA-AGAACTTGGGCACTGGTAGGATGAAGCAGATCTATGTTGCAAAATCATC 2578
consensus_14247#2 GGTTCTGACA-AGAACTTGGGCACTGGTAGGATGAAGCAGATCTATGTTGCAAAATCATC 160
consensus_14247#1 GGTTCTGACACAGAACTTGGGCACTGGTAGGATGAACCAGATCTATGTTGCCAAATCATC 97
********** ************************* ************** ********
consensus_14247#0 ATCAGCAAGTGGCCATGCCCCATCTGGTTAGAAGCACAAATGCTCTTTTGCA-AAGCCTG 2637
consensus_14247#2 ATCAGCAAGTGGCCATGCCCCATCTGGTTAGAAGCACAAATGCTCTTTTGCA-AAGCCTG 219
consensus_14247#1 ATCAGCAAGTGGCCATGCCCCATCTGGTTAGAAGCCCCAATGCTCTTTTGCACAAGCCTG 157
*********************************** * ************** *******
consensus_14247#0 CGTCAATCA-GGAGGCCGCAACAGCTCGACTCGAGCATATTTGCACCAGACACA--TGCG 2694
consensus_14247#2 CGTCAATCA-GGAGGCCGCAACAGCTCGACTCGAGCATATTTGCACCAGACACA--TGCG 276
consensus_14247#1 CGTCCATCACGGAGGCCGCAACAGCTCGACTCGAGCATATTTGCACCAGACACCACTGCG 217
**** **** ******************************************* ****
consensus_14247#0 AAATGTGTTGTCACTCCATGTCTGTCTATCCTTTTTGTTTTCTTTGGCGATTATAGCCTG 2754
consensus_14247#2 AAATGTGTTGTCACTCCATGTCTGTCTATCCTTTTTGTTTTCTTTGGCGATTATAGCCTG 336
consensus_14247#1 AAATGTGTTGTCACTCCATGTCTGTCTATCCTTTTTGTNTTCTTTGGCGATTATAGCCTG 277
************************************** *********************
consensus_14247#0 TGCTGATCA-TTTATCTATTTTTGGTTCA-TTGTCTTGCAT-AGAGAAAAGAAAAAGGTA 2811
consensus_14247#2 TGCTGATCA-TTTATCTATTTTTGGTTCA-TTGTCTTGCAT-AGAGAAAAGAAAAAGGTA 393
consensus_14247#1 TGCTGATCACTTTATCTATTTTTGGTTCACTTGTCTTGCANTAGAGAAAAGAAAAAGGGA 337
********* ******************* ********** **************** *
consensus_14247#0 GTGTGGTTGCA--GTGTCAAAACTTTATAGTGATAT-CGTGACA--TGCCTGGATAAAAT 2866
consensus_14247#2 GTGTGGTTGCA--GTGTCAAAACTTTATAGTGATAT-CGTGACA--TGCCTGGATAAAAT 448
consensus_14247#1 GTGTGGTTGCCACGTGTCCAAACTTTATAGTGATATTCGTGACCACTGCCTGGATAAAAT 397
********** ***** ***************** ****** **************
consensus_14247#0 TTGCAACCTTCAAAATATGCTGTTGTGTAAGTCGATGGTGTGCCGTCTGAATTGTTAATA 2926
consensus_14247#2 TTGCAACCTGCAAAAAAAAAAAAAAAAAAAAAAA-------------------------- 482
consensus_14247#1 TTGCACCTTCCAAATATGCTGTTGTGTAAGTCGATGGTGTGCCGTCTGAATTGTTAATAC 457
***** * * **** *
consensus_14247#0 CTATTATCATTATCATTATTATTTTTCCGGACTCTGGAGGTTTAAACAGCCTCGGAGATT 2986
consensus_14247#2 ------------------------------------------------------------
consensus_14247#1 TATTATCATTATCATTATTATTACAAAAAAAAAA-------------------------- 491
consensus_14247#0 GCTATAATAGGGATGAAAACATGCCCCTGTAAAAGAGAA 3025
consensus_14247#2 ---------------------------------------
consensus_14247#1 ---------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||