cluster # 14273

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Oryza sativa
cluster # 14273 cluster # 14273 Sequences # 15 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_14273#0 length = 773 sequences # 4
consensus_14273#1 length = 747 sequences # 5

consensus_14273#2 length = 637 sequences # 4
consensus_14273#3 length = 473 sequences # 1
consensus_14273#4 length = 236 sequences # 1

consensusID : consensus_14273#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 773
fasta sequence

                              [TCGAGTTTTTTTTTTTTTTTTTTTTTTTT----T------TTTTAATATTATCAACTGATACATCACATACTTAATTGCAAAATCTCTCATGGTTGTACACTACTAAATTACTAAAACAATGGAGCCCTTTATTTCATTCTGCATAATGCATAAACAAGTACTAATAAATTAAAAGAAATTCTACTTCACAGACAATCAAACATGACTACTAGTTGGGCTCCATTTTCCAATTTCCTTTGTGAAGGAAATTAAGGGTTCGCATCACCGAACCCAGATCCGGAACCTACACCAGCACCGCTGCCACCATATTGACCCTGACCGTTACCACCACCATTGCCACCAGCATTTGCATTTGCATACTGTCCATACCAGGTATTAGTAGCCTCACTAGAGCCTGAGCCGGTACCACTACCAGACCCATGACCGTAGGATGGCCAGTAACCACCAGCTTGTCCAGCTCCAGCACCAGCACCGCTACCGCCAGCACTGGATGATCCACCATAACCATAATACCCATTTTGATTGGTCTGGCTAGAGCCTGAGCCCGAACCAGATCCACTACCAGACCCTGACCCACCATATTGGCTGTAACCACCGNCTTCACCTTCTNCTTCACCACTTGCATGGGCACCATTGTAACCACTGCTACCAGATCCAGTCCCACTTNCCAACCCAGCTCCTGCACCATTCACGGATCCTGTTCCCTCTCCACTTCCTGTGCCCGAACCTTGGGCATTTGAGTAT-TTTTTACCCTTACAGCACTAGCTAATCCAATGCTCAAG]

[+] EMBL CA758198             [TCGAGTTTTTTTTTTTTTTTTTTTTTTTT    T      TTTTAATATTATCAACTGATACATCACATACTTAATTGCAAAATCTCTCATGGTTGTACACTACTAAATTACTAAAACAATGGAGCCCTTTATTTCATTCTGCATAATGCATAAACAAGTACTAATAAATTAAAAGAAATTCTACTTCACAGACAATCAAACATGACTACTAGTTGGGCTCCATTTTCCAATTTCCTTTGTGAAGGAAATTAAGGGTTCGCATCACCGAACCCAAATCCGGAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BE039930             [   AGTTTTTTTTTTTTTTTTTTTTTTTTGACATGAAGCATAATAATATTATCAACTGATACATCACATACTTAATTGCAAAATCTCTCATGGTTGTACACTACTAAATTACTAAAACAATGGAGCCCTTTATTTCATTCTGCATAATGCATAAACAAGTACTAATAAATTAAAAGAAATTCTACTTCACAGACAATCAAACATGACTACTAGTTGGGCTCCATTTTCCAATTTCCTTTGTGAAGGAAATTAAGGGTTCGCATCACCGAACCCAGATCCGGAACCTACACCAGCACCGCTGCCACCATATTGACCCTGACCGTTACCACCACCATTGCCACCAGCATTTGCATTTGCATACTGTCCATACCAGGTATTAGTAGCCTCACTAGAGCCTGAGCCGGTACCACTACCAGACCCATGACCGTAGGATGGCCAGTAACCACCAGCTTGTCCAGCTCCAGCACCAGCACCGTTACCGCCAGCACTGGATGATCCACCATAACCATAATACCCATTTTGATTGGTCTGGCTAGAGCCTGAGCCCGAACCAGATCCACTACCAGACCCTGACCCACCATATTGGCTGTAACCACCGNCTTCACCTTCTNCTTCACCACTTGCATGGGCACCATTGTAACCACTGCTACCAGATCCAGTCCCACTTNCCAACCCAGCTCCTGCACCATTCACGGATCCTGTTCCCTCTCCACTTCCTGTGCCCGAACCTTGGGCATTTGAGTAT TTTTTACC                              ]
[+] EMBL BE530977             [                                                                                                                TAAAACAATGGAGCCCTTTATTTCATTCTGCATAATGCATAAACAAGTACTAATAAATTAAAAGAAATTCTACTTCACAGACAATCAAACATGACTACTAGTTGGGCTCCATTTTCCAATTTCCTTTGTGAAGGAAATTAAGGGTTCGCATCACCGAACCCAGATCCGGAACCTACACCAGCACCGCTGCCACCATATTGACCCTGACCGTTACCACCACCATTGCCACCAGCATTTGCATTTGCATACTGTCCATACCAGGTATTAGTAGCCTCACTAGAGCCTGAGCCGGTACCACTACCAGACCCATGACCGTAGGATGGCCAGTAACCACCAGCTTGTCCAGCTCCAGCACCAGCACCGCTACCGCCAGCACTGGATGATCCACCATAACCATAATACCCATTTTGATTGGT                                                                                                                                                                                                                                                                ]
[-] EMBL BE530959             [                                                                                                                                                                                                                                                                               CCAGATCCGGAACCTACACCAGCACCGCTGCCACCATATTGACCCTGACCGTTACCACCACCATTGCCACCAGCATTTGCATTTGCATACTGTCCATACCAGGTATTAGTAGCCTCACTAGAGCCTGAGCCGGTACCACTACCAGACCCATGACCGTAGGATGGCCAGTAACCACCAGCTTGTCCAGCTCCAGCACCAGCACCGCTACCGCCAGCACTGGATGATCCACCATAACCATAATACCCATTTTGATTGGTCTGGCTAGAGCCTGAGCCCGAACCAGATCCACTACCAGACCCTGACCCACCATATTGGCTGTAACCACCGCCTCCACCTCCTCCTCCACCACTTGCATGGGCACCATTGTAACCACTGCTACCAGATCCAGTCCCACTTCCCAACCCAGCTCCTGCACCATTCACGGATCCTGTTCCCTCTCCACTTCCTGTGCCCGAACCTTGGGCATTTGAGTATCTTTCTACCCTTACAGCACTAGCTAATCCAATGCTCAAG]




>consensus_14273#0
TCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATATTATCAACTGATACATCACATA
CTTAATTGCAAAATCTCTCATGGTTGTACACTACTAAATTACTAAAACAATGGAGCCCTT
TATTTCATTCTGCATAATGCATAAACAAGTACTAATAAATTAAAAGAAATTCTACTTCAC
AGACAATCAAACATGACTACTAGTTGGGCTCCATTTTCCAATTTCCTTTGTGAAGGAAAT
TAAGGGTTCGCATCACCGAACCCAGATCCGGAACCTACACCAGCACCGCTGCCACCATAT
TGACCCTGACCGTTACCACCACCATTGCCACCAGCATTTGCATTTGCATACTGTCCATAC
CAGGTATTAGTAGCCTCACTAGAGCCTGAGCCGGTACCACTACCAGACCCATGACCGTAG
GATGGCCAGTAACCACCAGCTTGTCCAGCTCCAGCACCAGCACCGCTACCGCCAGCACTG
GATGATCCACCATAACCATAATACCCATTTTGATTGGTCTGGCTAGAGCCTGAGCCCGAA
CCAGATCCACTACCAGACCCTGACCCACCATATTGGCTGTAACCACCGNCTTCACCTTCT
NCTTCACCACTTGCATGGGCACCATTGTAACCACTGCTACCAGATCCAGTCCCACTTNCC
AACCCAGCTCCTGCACCATTCACGGATCCTGTTCCCTCTCCACTTCCTGTGCCCGAACCT
TGGGCATTTGAGTATTTTTTACCCTTACAGCACTAGCTAATCCAATGCTCAAG

consensusID : consensus_14273#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 747
fasta sequence

                              [TTTTTTTTTTTTTACAGAAACAATGAAGCCCTTTATTTCTTGTTGAACAACGTATGAAACAAGTACAAACAAATGATAACGAATTATACTTCTAGACATAACATGAGATGGTAGGCTCCATTTCTTTAATTTCCTTTACGAAGGAAATCAAGGGTTCGCGTCACCGTACCCAGATCCAGAACCCGCACCAACGCCACGGCCACCATATTGGCCTTGGCCGTTACCACCACCATTGCCACCGGCATTTGCGTTTGCATATGGTCCACTCCAGTAGTTATTAGCCTCGCTAGAGCCTGAGCCGGTACCACTACCAGACCCATGACCGTAGGATGGCCAATAACCACCTGCTTGTCCGGCACCGCCACCAGCACCAGCACCGCCAGCGCTGGATGATCCGCCATAACCATAATATCCATTTTGAGAGGTCTGGCTAGAGCCTGAGCCCGTGCCATATCCGCTACCAGATCCTGATCCACCGTATTGACTGTAACCACCACCTCCGCCGCCACCTCCACCACTTGCATGGGCACCGTAATAGTTACTGCTACCAGACCCAACCCCACTTCCTTTCCCGGCTCCTCCACCATTCACAGATCCTCCACCCTCACCGCCTCCCGTGCCAGATCCCTGGGAACTAGAGTATCTTTCTACTCTTGCAGCACTGGCTAGTCCAATACTTAAGAGGACAACGAACCCAAGAGCTGCAAGCTTAGTACCCGCCATTGTTATAGCTTACTCTATGAGCTC]

[-] EMBL CA756737             [TTTTTTTTTTTTTACAGAAACAATGAAGCCCTTTATTTCTTGTTGAACAACGTATGAAACAAGTACAAACAAATGATAACGAATTATACTTCTAGACATAACATGAGATGGTAGGCTCCATTTCTTTAATTTCCTTTACGAAGGAAATCAAGGGTTCGCGTCACCGTACCCAGATCCAGAACCCGCACCAACGCCACGGCCACCATATTGGCCTTGGCCGTTACCACCACCATTGCCACCGGCATTTGCGTTTGCATATGGTCCACTCCAGTAGTTATTAGCCTCGCTAGAGCCTGAGCCGGTACCACTACCAGACCCATGACCGTAGGATGGCCAATAACCACCTGCTTGTCCGG                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CA758094             [    TTTTTTTTTACAGAAACAATGAAGCCCTTTATTTCTTGTTGAACAACGTATGAAACAAGTACAAACAAATGATAACGAATTATACTTCTAGACATAACATGAGATGGTAGGCTCCATTTCTTTAATTTCCTTTACGAAGGAAATCAAGGGTTCGCGTCACCGTACCCAGATCCAGAACCCGCACCAACGCCACGGCCACCATATTGGCCTTGGCCGTTACCACCACCATTGCCACCGGCATTTGCGTTTGCATATGGTCCACTCCAGTAGTTATTAGCCTCGCTAGAGCCTGAGCCGGTACCACTACCAGACCCATGACCGTAGGATGGCCAATAACCACCTGCTTGTCCGGCACCGCCACCAGCACCAGCACCGCCAGCGCTGGATGATC                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL BE039576             [                                                     ATGAAACAAGTACAAACAAATGATAACGAATTATACTTCTAGACATAACATGAGATGGTAGGCTCCATTTCTTTAATTTCCTTTACGAAGGAAATCAAGGGTTCGCGTCACCGTACCCAGATCCAGAACCCGCACCAACGCCACGGCCACCATATTGGCCTTGGCCGTTACCACCACCATTGCCACCGGCATTTGCGTTTGCATATGGTCCACTCCAGTAGTTATTAGCCTCGCTAGAGCCTGAGCCGGTACCACTACCAGACCCATGACCGTAGGATGGCCAATAACCACCTGCTTGTCCGGCACCGCCACCAGCACCAGCACCGCCAGCGCTGGATGATCCACCATAACCATAATATCCATTTTGAGAGGTCTGGCTAGA                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CA753626             [                                                                                                                                   TCC TTACGGAGGGAATTTAGGGTTCGCATCACCGTACCCGGATCCAGAACCCGCACCAACGCCACGGCCACCATATTGGCTTTGGCCGTTACCACCACCATTGCCACCGGCATTTGCGTTTGCATATGGTCCACTCCAGTAGTTATTAGCCTCGCTAGAGCCTGAGCCGGTACCGCTACCAGACCCATGACCATACGATGGCCAATAACCACCGGCTTGTCCGGCACCGCCACCAGCACCAGCACCGCCAGCACTGGATGACCCGCCATAACCATAATATCCATTTTGAGAGGTCTGGCTAGAGCCTGAGCCCGTGCCATATCCGCTACCAGATCCTGATCCACCGTATTGACTGTAACCACCACCTCCGCCGCCACCTCCACCACTTGCATGGGCACCGTAATAGTTACTGCTACCAGACCCAACCCCACTTCCTTTCCCGGCTCCTCCACCATTCACAGATCCTCCACCCTCACCGCCTCCCGTGCCAGATCCCTGGGAACTAGAGTATCTTTCTACTCTTGCAGCACTGGCTAGTCCAATACTTAAGAGGACAACGAACCCAAGAGCTGCAAGCTTAGTACCCGCCATTGTTATAGCTTACTCTATGAGCTC]
[-] EMBL CA753664             [                                                                                                                                   TCC TTACGGAGGGAATTTAGGGTTCGCATCACCGTACCCGGATCCAGAACCCGCACCAACGCCACGGCCACCATATTGGCTTTGGCCGTTACCACCACCATTGCCACCGGCATTTGCGTTTGCATATGGTCCACTCCAGTAGTTATTAGCCTCGCTAGAGCCTGAGCCGGTACCGCTACCAGACCCATGACCATACGATGGCCAATAACCACCGGCTTGTCCGGCACCGCCACCAGCACCAGCACCGCCAGCACTGGATGACCCGCCATAACCATAATATCCATTTTGAGAGGTCTGGCTAGAGCCTGAGCCCGTGCCATATCCGCTACCAGATCCTGATCCACCGTATTGACTGTAACCACCACCTCCGCCGCCACCTCCACCACTTGCATGGGCACCGTAATAGTTACTGCTACCAGACCCAACCCCACTTCCTTTCCCGGCTCCTCCACCATTCACAGATCCTCCACCCTCACCGCCTCCCGTGCCAGATCCCTGGGAACTAGAGTATCTTTCTACTCTTGCAGCACTGGCTAGTCCAATACTTAAGAGGACAACGAACCCAAGAGCTGCAAGCTTAGTACCCGCCATTGTTATAGCTTACTCTATGAGCTC]




>consensus_14273#1
TTTTTTTTTTTTTACAGAAACAATGAAGCCCTTTATTTCTTGTTGAACAACGTATGAAAC
AAGTACAAACAAATGATAACGAATTATACTTCTAGACATAACATGAGATGGTAGGCTCCA
TTTCTTTAATTTCCTTTACGAAGGAAATCAAGGGTTCGCGTCACCGTACCCAGATCCAGA
ACCCGCACCAACGCCACGGCCACCATATTGGCCTTGGCCGTTACCACCACCATTGCCACC
GGCATTTGCGTTTGCATATGGTCCACTCCAGTAGTTATTAGCCTCGCTAGAGCCTGAGCC
GGTACCACTACCAGACCCATGACCGTAGGATGGCCAATAACCACCTGCTTGTCCGGCACC
GCCACCAGCACCAGCACCGCCAGCGCTGGATGATCCGCCATAACCATAATATCCATTTTG
AGAGGTCTGGCTAGAGCCTGAGCCCGTGCCATATCCGCTACCAGATCCTGATCCACCGTA
TTGACTGTAACCACCACCTCCGCCGCCACCTCCACCACTTGCATGGGCACCGTAATAGTT
ACTGCTACCAGACCCAACCCCACTTCCTTTCCCGGCTCCTCCACCATTCACAGATCCTCC
ACCCTCACCGCCTCCCGTGCCAGATCCCTGGGAACTAGAGTATCTTTCTACTCTTGCAGC
ACTGGCTAGTCCAATACTTAAGAGGACAACGAACCCAAGAGCTGCAAGCTTAGTACCCGC
CATTGTTATAGCTTACTCTATGAGCTC

consensusID : consensus_14273#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 637
fasta sequence

                              [TTTTTTTTTACTGAATCAATGAAGCCCTTTATTTCTTGTTGCACAACACATGAAACAAGTACAAATAAATGAGAACAAATTCTACTTCATAGACATGGTACGAAACATAGTGGGCTCCATTTTTAAAATTTCCTTTACGAAGGAAATTAAGGGCTGGCATCACCAGATCCAACTCCAGCTCCTCCACCACCGCCACTGCCACCATATTGGCCTTGACCATTACCGCCACCATTGCCACCAGCATTTGCATTTGCATATGGTCCATAGTAGTAGTTATTAGCAGTGCTAGAGCCATAGCCCGTACCACTGCCGGACCCATGACCATTGGATGGCCAATAACCACCGGCTTGTCCAGCACCACCACCAACACCAGCACCGCTAGCACTGGATGACCCACCATAACCATAGTATCCATTTTGTGAAGTTTGGCTTGAGCCTGAGCCCGTGCCGTATCCGCTACCAGATCCTGATCCACCGTATTGGCTGTAACCACCACCTCCGCCGCCACCTCCACCACTTGCATGAGCACCATAAGAGTTACTGCTACCAGACCCAGCCCCGACTCCTTTCCCAGCTCCCCCTCCGTTCACATATCCTCCTCCCTCTCCACCTCCTGTACCTGAACCTTGGGAACTGG]

[-] EMBL BE039625             [TTTTTTTTTACTGAATCAATGAAGCCCTTTATTTCTTGTTGCACAACACATGAAACAAGTACAAATAAATGAGAACAAATTCTACTTCATAGACATGGTACGAAACATAGTGGGCTCCATTTTTAAAATTTCCTTTACGAAGGAAATTAAGGGCTGGCATCACCAGATCCAACTCCAGCTCCTCCACCACCGCCACTGCCACCATATTGGCCTTGACCATTACCGCCACCATTGCCACCAGCATTTGCATTTGCATATGGTCCATAGTAGTAGTTATTAGCAGTGCTAGAGCCATAGCCCGTACCACTGCCGGACCCATGACCATTGGATGGCCAATAACCACCGGCTT                                                                                                                                                                                                                                                                                                ]
[-] EMBL CA757863             [TTTTTTTTTACTGAATCAATGAAGCCCTTTATTTCTTGTTGCACAACACATGAAACAAGTACAAATAAATGAGAACAAATTCTACTTCATAGACATGGTACGAAACATAGTGGGCTCCATTTTTAAAATTTCCTTTACGAAGGAAATTAAGGGCTGGCATCACCAGATCCAACTCCAGCTCCTCCACCACCGCCACTGCCACCATATTGGCCTTGACCATTACCGCCACCATTGCCACCAGCATTTGCATTTGCATATGGTCCATAGTAGTAGTTATTAGCAGTGCTAGAGCCATAGCCCGTACCACTGCCGGACCCATGACCATTGGATGGCCAAT                                                                                                                                                                                                                                                                                                            ]
[-] EMBL BE530970             [       TTACTGAATCAATGAAGCCCTTTATTTCTTGTTGCACAACACATGAAACAAGTACAAATAAATGAGAACAAATTCTACTTCATAGACATGGTACGAAACATAGTGGGCTCCATTTTTAAAATTTCCTTTACGAAGGAAATTAAGGGCTGGCATCACCAGATCCAACTCCAGCTCCTCCACCACCGCCACTGCCACCATATTGGCCTTGACCATTACCGCCACCATTGCCACCAGCATTTGCATTTGCATATGGTCCATAGTAGTAGTTATTAGCAGTGCTAGAGCCATAGCCCGTACCACTGCCGGACCCATGACCATTGGATGG                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL BE607361             [                                                                        GAACAAATTCTACTTCATAGACATGGTACGAAACATAGTGGGCTCCATTTTTAAAATTTCCTTTACGAAGGAAATTAAGGGCTGGCATCACCAGATCCAACTCCAGCTCCTCCACCACCGCCACTGCCACCATATTGGCCTTGACCATTACCGCCACCATTGCCACCAGCATTTGCATTTGCATATGGTCCATAGTAGTAGTTATTAGCAGTGCTAGAGCCATAGCCCGTACCACTGCCGGACCCATGACCATTGGATGGCCAATAACCACCGGCTTGTCCAGCACCACCACCAACACCAGCACCGCTAGCACTGGATGACCCACCATAACCATAGTATCCATTTTGTGAAGTTTGGCTTGAGCCTGAGCCCGTGCCGTATCCGCTACCAGATCCTGATCCACCGTATTGGCTGTAACCACCACCTCCGCCGCCACCTCCACCACTTGCATGAGCACCATAAGAGTTACTGCTACCAGACCCAGCCCCGACTCCTTTCCCAGCTCCCCCTCCGTTCACATATCCTCCTCCCTCTCCACCTCCTGTACCTGAACCTTGGGAACTGG]




>consensus_14273#2
TTTTTTTTTACTGAATCAATGAAGCCCTTTATTTCTTGTTGCACAACACATGAAACAAGT
ACAAATAAATGAGAACAAATTCTACTTCATAGACATGGTACGAAACATAGTGGGCTCCAT
TTTTAAAATTTCCTTTACGAAGGAAATTAAGGGCTGGCATCACCAGATCCAACTCCAGCT
CCTCCACCACCGCCACTGCCACCATATTGGCCTTGACCATTACCGCCACCATTGCCACCA
GCATTTGCATTTGCATATGGTCCATAGTAGTAGTTATTAGCAGTGCTAGAGCCATAGCCC
GTACCACTGCCGGACCCATGACCATTGGATGGCCAATAACCACCGGCTTGTCCAGCACCA
CCACCAACACCAGCACCGCTAGCACTGGATGACCCACCATAACCATAGTATCCATTTTGT
GAAGTTTGGCTTGAGCCTGAGCCCGTGCCGTATCCGCTACCAGATCCTGATCCACCGTAT
TGGCTGTAACCACCACCTCCGCCGCCACCTCCACCACTTGCATGAGCACCATAAGAGTTA
CTGCTACCAGACCCAGCCCCGACTCCTTTCCCAGCTCCCCCTCCGTTCACATATCCTCCT
CCCTCTCCACCTCCTGTACCTGAACCTTGGGAACTGG

consensusID : consensus_14273#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 473
fasta sequence

                              [AGCCCTTTATTTATTGTTGCATAATACATTGAACAGGTACAAATAAATGAGAACAAATTGTACATCGTAGACATGACAACAAACAAAGGTGTGTTGGGCTCATTTCTAGAATTTCCTTTACGAAGGAAATTAAGGGTTGGCGTCACCGTATCCCGATCCAACACCTGCGCCAATGCCACGGCCACCATATTGGCCTTGACCGTTACCACCACCATTGCCACCAGCATTAGCATTTGCGTATGGTCCTCCATAGTAATTATTATCAGCGTAGCTAGAGCCAGAACCCGTACCACTACCAGACCCCTGACCATTGGATGGCCAATAACCACCAGCTTGTCCAGCGCCGCCACCAGCACCAGCACCCCCAGCACTGGATGACCCGCCATAACTATAATATCTATTTTGAGAGGTCTGGCTAGAGCCTGAGCCCGTGCCATATCCGCTACCAGATCCCGATCCACCGTATTGGCTGT]

[-] EMBL AK109095             [AGCCCTTTATTTATTGTTGCATAATACATTGAACAGGTACAAATAAATGAGAACAAATTGTACATCGTAGACATGACAACAAACAAAGGTGTGTTGGGCTCATTTCTAGAATTTCCTTTACGAAGGAAATTAAGGGTTGGCGTCACCGTATCCCGATCCAACACCTGCGCCAATGCCACGGCCACCATATTGGCCTTGACCGTTACCACCACCATTGCCACCAGCATTAGCATTTGCGTATGGTCCTCCATAGTAATTATTATCAGCGTAGCTAGAGCCAGAACCCGTACCACTACCAGACCCCTGACCATTGGATGGCCAATAACCACCAGCTTGTCCAGCGCCGCCACCAGCACCAGCACCCCCAGCACTGGATGACCCGCCATAACTATAATATCTATTTTGAGAGGTCTGGCTAGAGCCTGAGCCCGTGCCATATCCGCTACCAGATCCCGATCCACCGTATTGGCTGT]




>consensus_14273#3
AGCCCTTTATTTATTGTTGCATAATACATTGAACAGGTACAAATAAATGAGAACAAATTG
TACATCGTAGACATGACAACAAACAAAGGTGTGTTGGGCTCATTTCTAGAATTTCCTTTA
CGAAGGAAATTAAGGGTTGGCGTCACCGTATCCCGATCCAACACCTGCGCCAATGCCACG
GCCACCATATTGGCCTTGACCGTTACCACCACCATTGCCACCAGCATTAGCATTTGCGTA
TGGTCCTCCATAGTAATTATTATCAGCGTAGCTAGAGCCAGAACCCGTACCACTACCAGA
CCCCTGACCATTGGATGGCCAATAACCACCAGCTTGTCCAGCGCCGCCACCAGCACCAGC
ACCCCCAGCACTGGATGACCCGCCATAACTATAATATCTATTTTGAGAGGTCTGGCTAGA
GCCTGAGCCCGTGCCATATCCGCTACCAGATCCCGATCCACCGTATTGGCTGT

consensusID : consensus_14273#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 236
fasta sequence

                              [TTCTACTTCATGAGACATGGTTCTAAACACAGTGGGCTCCATGTTTAAAATTTCCTTTACGAAAGAAATTAAGGGCTGGCATTACCAGATCCAACTTCATTTGCTGGACGACCCGCGCTGTCACCATGATGGGGAGTGGACGGTTACGTGAGACCATAGCGCAGCACTATTTTTGCATTGTGAATGTCGGTGCATCGGCGCATATTGATATTGTCGGCTATTTAGCATTAGTTGTA]

[+] EMBL CA756673             [TTCTACTTCATGAGACATGGTTCTAAACACAGTGGGCTCCATGTTTAAAATTTCCTTTACGAAAGAAATTAAGGGCTGGCATTACCAGATCCAACTTCATTTGCTGGACGACCCGCGCTGTCACCATGATGGGGAGTGGACGGTTACGTGAGACCATAGCGCAGCACTATTTTTGCATTGTGAATGTCGGTGCATCGGCGCATATTGATATTGTCGGCTATTTAGCATTAGTTGTA]




>consensus_14273#4
TTCTACTTCATGAGACATGGTTCTAAACACAGTGGGCTCCATGTTTAAAATTTCCTTTAC
GAAAGAAATTAAGGGCTGGCATTACCAGATCCAACTTCATTTGCTGGACGACCCGCGCTG
TCACCATGATGGGGAGTGGACGGTTACGTGAGACCATAGCGCAGCACTATTTTTGCATTG
TGAATGTCGGTGCATCGGCGCATATTGATATTGTCGGCTATTTAGCATTAGTTGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14273#1      ------------------------------------------------------------
consensus_14273#3      ------------------------------------------------------------
consensus_14273#0      TCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATATTATCAACTGATACATCACATA 60
consensus_14273#2      ------------------------------------------------------------
consensus_14273#4      ------------------------------------------------------------
                                                                                   

consensus_14273#1      ---------------------------TTTTTTTTTTTTTACAGAAACAATGAAGCCCTT 33
consensus_14273#3      -----------------------------------------------------AGCCCTT 7
consensus_14273#0      CTTAATTGCAAAATCTCTCATGGTTGTACACTACTAAATTACTAAAACAATGGAGCCCTT 120
consensus_14273#2      -------------------------------TTTTTTTTTACTGAATCAATGAAGCCCTT 29
consensus_14273#4      ------------------------------------------------------------
                                                                                   

consensus_14273#1      TATTTCTTGTTGAACAACGTATGAAACAAGTACAAACAAATGATAACGAATTATACTTC- 92
consensus_14273#3      TATTTATTGTTGCATAATACATTGAACAGGTACAAATAAATGAGAACAAATTGTACATCG 67
consensus_14273#0      TATTTCATTCTGCATAATGCAT-AAACAAGTACTAATAAATTAAAAGAAATTCTACTTCA 179
consensus_14273#2      TATTTCTTGTTGCACAACACATGAAACAAGTACAAATAAATGAGAACAAATTCTACTTCA 89
consensus_14273#4      --------------------------------------------------TTCTACTTCA 10
                                                                         ** *** ** 

consensus_14273#1      T-AGACATAACATGAGATG-------GTAGGCTCCATTTCTTTAATTTCCTTTACGAAGG 144
consensus_14273#3      T-AGACATGACAACAAACAAAGGTGTGTTGGGCTCATTTCTAGAATTTCCTTTACGAAGG 126
consensus_14273#0      C-AGACA--ATCAAACATGACTACTAGTTGGGCTCCATTTTCCAATTTCCTTTGTGAAGG 236
consensus_14273#2      T-AGACATGGTACGAAACA-----TAGTGGGCTCCATTTTTAAAATTTCCTTTACGAAGG 143
consensus_14273#4      TGAGACATGGTTCTAAACA-----CAGTGGGCTCCATGTTTAAAATTTCCTTTACGAAAG 65
                         *****       * *         ** **   *   * *  **********  *** *

consensus_14273#1      AAATCAAGGGTTCGCGTCACCGTACCCAGATCCAGAACCCGCACCAACGCCACGGCCACC 204
consensus_14273#3      AAATTAAGGGTTGGCGTCACCGTATCCCGATCCAACACCTGCGCCAATGCCACGGCCACC 186
consensus_14273#0      AAATTAAGGGTTCGCATCACCGAACCCAGATCCGGAACCTACACCAGCACCGCTGCCACC 296
consensus_14273#2      AAATTAAGGGCTGGCATCACCAGATCCAACTCCAGCTCCTCCACCACCGCCACTGCCACC 203
consensus_14273#4      AAATTAAGGGCTGGCATTACCAGATCCAACTTCATTTGCTGGACGACCCGCGCTGTCACC 125
                       **** ***** * ** * ***  * **   * *     *    * *    * * * ****

consensus_14273#1      ATATTGGCC--TTGGCCGTTAC-CACCACCATTGCCACCGGCATTTGCGTTTGCATATGG 261
consensus_14273#3      ATATTGGCC--TTGACCGTTAC-CACCACCATTGCCACCAGCATTAGCATTTGCGTATGG 243
consensus_14273#0      ATATTGACC--CTGACCGTTAC-CACCACCATTGCCACCAGCATTTGCATTTGCATACTG 353
consensus_14273#2      ATATTGGCC--TTGACCATTAC-CGCCACCATTGCCACCAGCATTTGCATTTGCATATGG 260
consensus_14273#4      ATGATGGGGAGTGGACGGTTACGTGAGACCATAGCG--CAGCACT---ATTTTTGCATTG 180
                       **  **       * *  ****     ***** **   * *** *    ***    *  *

consensus_14273#1      TCCACTCCAGTAGTTATTA---GCCTCGCTAGAGCCTGAGCCGGTACCACTACCAGACCC 318
consensus_14273#3      TCCTCCATAGTAATTATTATCAGCGTAGCTAGAGCCAGAACCCGTACCACTACCAGACCC 303
consensus_14273#0      TCCATACCAGGTATTAGTA---GCCTCACTAGAGCCTGAGCCGGTACCACTACCAGACCC 410
consensus_14273#2      TCCATAGTAGTAGTTATTA---GCAGTGCTAGAGCCATAGCCCGTACCACTGCCGGACCC 317
consensus_14273#4      TGAATGTCGGT-----------GCATCGGCGCATATTGATATTGT-CGGCTATTTAGCAT 228
                       *        *            **        *     *    ** *  **      *  

consensus_14273#1      ATGACCGTAGGATGGCCAATAACCACCTGCTTGTCCGGCACCGCCACCAGCACCAGCACC 378
consensus_14273#3      CTGACCATTGGATGGCCAATAACCACCAGCTTGTCCAGCGCCGCCACCAGCACCAGCACC 363
consensus_14273#0      ATGACCGTAGGATGGCCAGTAACCACCAGCTTGTCCAGCTCCAGCACCAGCACCGCTACC 470
consensus_14273#2      ATGACCATTGGATGGCCAATAACCACCGGCTTGTCCAGCACCACCACCAACACCAGCACC 377
consensus_14273#4      -TAGTTGTA--------------------------------------------------- 236
                        *     *                                                    

consensus_14273#1      GCCAGCGCTGGATGATCCGCCATAACCATAATATCCATTTTGAGAGGTCTGGCTAGAGCC 438
consensus_14273#3      CCCAGCACTGGATGACCCGCCATAACTATAATATCTATTTTGAGAGGTCTGGCTAGAGCC 423
consensus_14273#0      GCCAGCACTGGATGATCCACCATAACCATAATACCCATTTTGATTGGTCTGGCTAGAGCC 530
consensus_14273#2      GCTAGCACTGGATGACCCACCATAACCATAGTATCCATTTTGTGAAGTTTGGCTTGAGCC 437
consensus_14273#4      ------------------------------------------------------------
                                                                                   

consensus_14273#1      TGAGCCCGTGCCATATCCGCTACCAGATCCTGATCCACCGTATTGACTGTAACCACCACC 498
consensus_14273#3      TGAGCCCGTGCCATATCCGCTACCAGATCCCGATCCACCGTATTGGCTGT---------- 473
consensus_14273#0      TGAGCCCGAACCAGATCCACTACCAGACCCTGACCCACCATATTGGCTGTAACCACCGNC 590
consensus_14273#2      TGAGCCCGTGCCGTATCCGCTACCAGATCCTGATCCACCGTATTGGCTGTAACCACCACC 497
consensus_14273#4      ------------------------------------------------------------
                                                                                   

consensus_14273#1      TCCGCCGCCACCTCCACCACTTGCATGGGCACCGTAATAGTTACTGCTACCAGACCCAAC 558
consensus_14273#3      ------------------------------------------------------------
consensus_14273#0      TTCACCTTCTNCTTCACCACTTGCATGGGCACCATTGTAACCACTGCTACCAGATCCAGT 650
consensus_14273#2      TCCGCCGCCACCTCCACCACTTGCATGAGCACCATAAGAGTTACTGCTACCAGACCCAGC 557
consensus_14273#4      ------------------------------------------------------------
                                                                                   

consensus_14273#1      CCCACTTCCTTTCCCGGCTCCTCCACCATTCACAGATCCTCCACCCTCACCGCCTCCCGT 618
consensus_14273#3      ------------------------------------------------------------
consensus_14273#0      CCCACTTNCCAACCCAGCTCCTGCACCATTCACGGATCCTGTTCCCTCTCCACTTCCTGT 710
consensus_14273#2      CCCGACTCCTTTCCCAGCTCCCCCTCCGTTCACATATCCTCCTCCCTCTCCACCTCCTGT 617
consensus_14273#4      ------------------------------------------------------------
                                                                                   

consensus_14273#1      GCCAGATCCCTGGGAACTAGAGTATCTTTCTACTCTTGCAGCACTGGCTAGTCCAATACT 678
consensus_14273#3      ------------------------------------------------------------
consensus_14273#0      GCCCGAACCTTGGGCATTTGAGTAT-TTTTTACCCTTACAGCACTAGCTAATCCAATGCT 769
consensus_14273#2      ACCTGAACCTTGGGAACTGG---------------------------------------- 637
consensus_14273#4      ------------------------------------------------------------
                                                                                   

consensus_14273#1      TAAGAGGACAACGAACCCAAGAGCTGCAAGCTTAGTACCCGCCATTGTTATAGCTTACTC 738
consensus_14273#3      ------------------------------------------------------------
consensus_14273#0      CAAG-------------------------------------------------------- 773
consensus_14273#2      ------------------------------------------------------------
consensus_14273#4      ------------------------------------------------------------
                                                                                   

consensus_14273#1      TATGAGCTC 747
consensus_14273#3      ---------
consensus_14273#0      ---------
consensus_14273#2      ---------
consensus_14273#4      ---------