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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14291#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1693 fasta sequence
[CTCCAACCCCCCGCGCAGCCGAAGGAATCCTCGACGGCGACGACGATGGCCGCCGCGACGGAGAAGACGGCCGAGGAGATCCGCCGCGAGCTCCAGGAGCTCCAGCGCCAGCACCGCGAGATCAGCGAGCGCCTCCGAGACCCCCGCGGCCTCCGCCGCGGCGCGCCCGCCGCTGCAGGACCCGGCGGGCCCCGCCCACTTCGCGGATTCCCTAGACCAGCTGTGGATTTGGTGGACCAGTCTGCGCCTAAGCGGAGGATTCTATCTGCAGTGGTTAAAGTGGAGGATACTGAAGCTAAGGAGGATGTCAAGAAGGAAGCGGAGGCAGAGGGGCCGGAGGGCGGTTCGGCTGCTGCTGAAGGCGGTGAGAGGAGGGATGGTGGGTTCAGGAGGGATGGGAGCCAGCGCATGCCGAGGAGGGAGTTTGATATGTCATTGCCAGAACCTCTCCCGAGGGAATTTCCCAAGGATGAGGATCAAAGCCTTGTGAAGAGGAACAAGAGGATGCTGGGGAAGCTTCTTGTCGGTACATTAGAGAAATTTCAGCAAGAGGACAAAAAACTGTCCAACACAGAGGCTTATATGCGCAGATCAGAGGTTCAGCGAAAGGCTGATCAAAAGGCTCGTGAGGAAAGTGAAAGGTTGCGGCAGCAAGAGCGAGAGCAAGCAATAGAGAAGCGTAAGCGTGATATGATGCTGCGTGCTCGAGTAGCTGCTAAGGCAGAAGAAAAGAGGTTGGAGCTGTTATACATGCAGTGGGCTGAGCATCACAAAAAGCTGTCCAATTTCTTAAGGTTATTTTTATTCCTGGTCCAAAAGTATCCATATTGACAATTAAATTGAGGGAAGATGCGTTTCTGATTGTGCAAATCTTGATGTTTGATGTTCATAGGGGTTTCTATATCCATTTTGCTAAATTACACATTAGTATCTTTTTGAACATTATTGTTGTTTGTCAGGACAACTGCGGAACCACCAATTTACTACATGCCAGCTAAACCAATAATTGATGATCCGGCTATTGCTGAGGAGAACAAGGAAAAGGCATTTCAAGAATGGAAATCTGAACGCAGGGCTGAGCTAACTCAGTTTCAAAAGCAAGTCGAAGAACAGTACATGTCTAATGTTGAGAGGCAGTTGGAAAGGATGCAGAATGCGCGGAATGCACGGAGGGGTAATGGTCCTTCAAACATGCA-AGAAATGGACA-AGGAGCTGGACACGCA-CAGGGCGGAGCATGGT-CCAAAAACTCGACGAGTTCTTGAGGGTGGCAATGACGATGAGGATGATATGGACGATATGGCCGTGGAAGATGAGCTGATGGATGAAGTCCTTGGCATTAACGAGCCAATCAGCGATGAGCAAACCA-AGCCGTCTGAAGAAGCTGCTGATGGTGTTCCGGTGTCTGAGGAAGTGCAATAGGTAATTTGTTTTGTATTGTTGCGAGGTAGGCATCTAGGAGTTCCACATTTGATATCCTTCAGCTGCCCTCATTTTCTGACGCTTGTTGTATGTCTGTTGACGCTTGAGATTTTCCCCGCTGTTATCAAGCCATATATTGTTGCGGGATGTATTGCCGTTGAGCGATATACTCTGTTAATCATTGCATCCTTTGCGTTTCTAGTATAAATCGAGCAATTTACTGATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCCGGCACGAGGC]
[+] EMBL AK068404 [CTCCAACCCCCCGCGCAGCCGAAGGAATCCTCGACGGCGACGACGATGGCCGCCGCGACGGAGAAGACGGCCGAGGAGATCCGCCGCGAGCTCCAGGAGCTCCAGCGCCAGCACCGCGAGATCAGCGAGCGCCTCCGAGACCCCCGCGGCCTCCGCCGCGGCGCGCCCGCCGCTGCAGGACCCGGCGGGCCCCGCCCACTTCGCGGATTCCCTAGACCAGCTGTGGATTTGGTGGACCAGTCTGCGCCTAAGCGGAGGATTCTATCTGCAGTGGTTAAAGTGGAGGATACTGAAGCTAAGGAGGATGTCAAGAAGGAAGCGGAGGCAGAGGGGCCGGAGGGCGGTTCGGCTGCTGCTGAAGGCGGTGAGAGGAGGGATGGTGGGTTCAGGAGGGATGGGAGCCAGCGCATGCCGAGGAGGGAGTTTGATATGTCATTGCCAGAACCTCTCCCGAGGGAATTTCCCAAGGATGAGGATCAAAGCCTTGTGAAGAGGAACAAGAGGATGCTGGGGAAGCTTCTTGTCGGTACATTAGAGAAATTTCAGCAAGAGGACAAAAAACTGTCCAACACAGAGGCTTATATGCGCAGATCAGAGGTTCAGCGAAAGGCTGATCAAAAGGCTCGTGAGGAAAGTGAAAGGTTGCGGCAGCAAGAGCGAGAGCAAGCAATAGAGAAGCGTAAGCGTGATATGATGCTGCGTGCTCGAGTAGCTGCTAAGGCAGAAGAAAAGAGGTTGGAGCTGTTATACATGCAGTGGGCTGAGCATCACAAAAAGCTGTCCAATTTCTTAAGGTTATTTTTATTCCTGGTCCAAAAGTATCCATATTGACAATTAAATTGAGGGAAGATGCGTTTCTGATTGTGCAAATCTTGATGTTTGATGTTCATAGGGGTTTCTATATCCATTTTGCTAAATTACACATTAGTATCTTTTTGAACATTATTGTTGTTTGTCAGGACAACTGCGGAACCACCAATTTACTACATGCCAGCTAAACCAATAATTGATGATCCGGCTATTGCTGAGGAGAACAAGGAAAAGGCATTTCAAGAATGGAAATCTGAACGCAGGGCTGAGCTAACTCAGTTTCAAAAGCAAGTCGAAGAACAGTACATGTCTAATGTTGAGAGGCAGTTGGAAAGGATGCAGAATGCGCGGAATGCACGGAGGGGTAATGGTCCTTCAAACATGCA AGAAATGGACA AGGAGCTGGACACGCA CAGGGCGGAGCATGGT CCAAAAACTCGACGAGTTCTTGAGGGTGGCAATGACGATGAGGATGATATGGACGATATGGCCGTGGAAGATGAGCTGATGGATGAAGTCCTTGGCATTAACGAGCCAATCAGCGATGAGCAAACCA AGCCGTCTGAAGAAGCTGCTGATGGTGTTCCGGTGTCTGAGGAAGTGCAATAGGTAATTTGTTTTGTATTGTTGCGAGGTAGGCATCTAGGAGTTCCACATTTGATATCCTTCAGCTGCCCTCATTTTCTGACGCTTGTTGTATGTCTGTTGACGCTTGAGATTTTCCCCGCTGTTATCAAGCCATATATTGTTGCGGGATGTATTGCCGTTGAGCGATATACTCTGTTAATCATTGCATCCTTTGCGTTTCTAGTATAAATCGAGCAA ]
[+] EMBL CB674208 [ CGCGCAGCCGAAGGAATCCTCGACGGCGACGACGATGGCCGCCGCGACGGAGAAGACGGCCGAGGAGATCCGCCGCGAGCTCCAGGAGCTCCAGCGCCAGCACCGCGAGATCAGCGAGCGCCTCCGAGACCCCCGCGGCCTCCGCCGCGGCGCGCCCGCCGCTGCAGGACCCGGCGGGCCCCGCCCACTTCGCGGATTCCCTAGACCAGCTGTGGATTTGGTGGACCAGTCTGCGCCTAAGCGGAGGATTCTATCTGCAGTGGTTAAAGTGGAGGATACTGAAGCTAAGGAGGATGTCAAGAAGGAAGCGGAGGCAGAGGGGCCGGAGGGCGGTTCGGCTGCTGCTGAAGGCGGTGAGAGGAGGGATGGTGGGTTCAGGAGGGATGGGAGCCAGCGCATGCCGAGGAGGGAGTTTGATATGTCATTGCCAGAACCTCTCCCGAGGGAATTTCCCAAGGATGAGGATCAAAGCCTTGTGAAGAGGAACAAGAGGATGCTGGGGAAGCTTCTTGTCGGTACATTAGAGAAATTTCAGCAAGAGGACAAAAAACTGTCCAACACAGAGGCTTATATGCGCAGATCAGAGGTTCAGCGAAAGGCTGATCAAAAGGCTCGTGAGGAAAGTGAAAGGTTGCGGCAGCAAGAGCGAGAGCAAGCAATAGAGAAGCGTAAGCGTGATATGATGCTGCGTGCTCGAGTAGCTGCTAAGGCAGAAGAAAAGAGGTTGGAGCTGTTATACATGCAGTGGGCTGAGCATCACAAAAAGCTGTCCAATTTCTTAAGGTT ]
[+] EMBL CB664269 [ GCGCAGCCGAAGGAATCCTCGACGGCGACGACGATGGCCGCCGCGACGGAGAAGACGGCCGAGGAGATCCGCCGCGAGCTCCAGGAGCTCCAGCGCCAGCACCGCGAGATCAGCGAGCGCCTCCGAGACCCCCGCGGCCTCCGCCGCGGCGCGCCCGCCGCTGCAGGACCCGGCGGGCCCCGCCCACTTCGCGGATTCCCTAGACCAGCTGTGGATTTGGTGGACCAGTCTGCGCCTAAGCGGAGGATTCTATCTGCAGTGGTTAAAGTGGAGGATACTGAAGCTAAGGAGGATGTCAAGAAGGAAGCGGAGGCAGAGGGGCCGGAGGGCGGTTCGGCTGCTGCTGAAGGCGGTGAGAGGAGGGATGGTGGGTTCAGGAGGGATGGGAGCCAGCGCATGCCGAGGAGGGAGTTTGATATGTCATTGCCAGAACCTCTCCCGAGGGAATTTCCCAAGGATGAGGATCATAGCCTTGTGAAGAGGAACAAGAGGATGCTCGGGAA ]
[+] EMBL CB649399 [ ATCCTCGACGGCGACGACGATGGCCGCCGCGACGGAGAAGACGGCCGAGGAGATCCGCCGCGAGCTCCAGGAGCTCCAGCGCCAGCACCGCGAGATCAGCGAGCGCCTCCGAGACCCCCGCGGCCTCCGCCGCGGCGCGCCCGCCGCTGCAGGACCCGGCGGGCCCCGCCCACTTCGCGGATTCCCTAGACCAGCTGTGGATTTGGTGGACCAGTCTGCGCCTAAGCGGAGGATTCTATCTGCAGTGGTTAAAGTGGAGGATACTGAAGCTAAGGAGGATGTCAAGAAGGAAGCGGAGGCAGAGGGGCCGGAGGGCGGTTCGGCTGCTGCTGAAGGCGGTGAGAGGAGGGATGGTGGGTTCAGGAGGGATGGGAGCCAGCGCATGCCGAGGAGGGAGTTTGATATGTCATTGCCAGAACCTCTCCCGAGGGAATTTCCCAAGGATGAGGATCAAAGCCTTGTGAAGAGGAACAAGAGGATGCTGGGGAAGCTTCTTGTCGGTACATTAGAGAAATTTCAGCAAGAGGACAAAAAACTGTCCAACACAGAGGCTTATATGCGCAGATCAGAGGTTCAGCGAAAGGCTGATCAAAAGGCTCGTGAGGAAAGTGAAAGGTTGCGGCAGCAAGAGCGAGAGCAAGCAATAGAGAAGCGTAAGCGTGATATGATGCTGCGTGCTCGAGTAGCTGCTAAGGCAGAAGANAAGAGGTTGGAGCTGTTATACATGCAGTGGGCTGAGCATCACAAAAAGCTGTCCAATTTCTTAAGGTTATTTTTATTCCTGGTCCAAAAGTATCCATATTGACAATTAAATTGAGGGAAGAT ]
[+] EMBL CB651304 [ TCGCGGATTCCCTAGACCAGCTGTGGATTTGGTGGACCAGTCTGCGCCTAAGCGGAGGATTCTATCTGCAGTGGTTAAAGTGGAGGATACTGAAGCTAAGGAGGATGTCAAGAAGGAAGCGGAGGCAAAGGGGCCGGAGGGCGGTTCGGCTGCTGCTGAAGGCGGTGAGAGGAGGGATGGTGGGTTCAGGAGGGATGGGAGCCAGCGCATGCCGAGGAGGGAGTTTGATATGTCATTGCCAGAACCTCTCCCGAGGGAATTTCCCAAGGATGAGGATCAAAGCCTTGTGAAGAGGAACAAGAGGATGCTGGGGAAGCTTCTTGTCGGTACATTAGAGAAATTTCAGCAAGAGGACAAAAAACTGTCCAACACAGAGGCTTATATGCGCAGATCAGAGGTTCAGCGAAAGGCTGATCAAAAGGCTCGTGAGGAAAGTGAAAGGTTGCGGCAGCAAGAGCGAGAGCAAGCAATAGAGAAGCGTAAGCGTGATATGATGCTGCGTGCTCGAGTAGCTGCTAAGGCAGAAGAAAAGAGGTTGGAGCTGTTATACATGCAGTGGGCTGAGCATCACAAAAAGCTGTCCAATTTCTTAAGGTTATTTTTATTCCTGGTCCAAAAGTATCCATATTGACAATTAAATTGAGGGAAGATGCGTTTCTGATTGTGCAAATCTTGATGTTTGATGTTCATAGGGGTTTCTATATCCATTTTGCTAAATTACACATTAGTATCTTTTTGAACATTATTGTTGTTTGTCAGGACAACTGCGGAACCACCAATTTACTACATGCCAGCTAAACCAATAATTGATGATCC ]
[-] EMBL CB649400 [ ATATTGACAATTAAATTGAGGGAAGATGCGTTTCTGATTGTGCAAATCTTGATGTTTGATGTTCATAGGGGTTTCTATATCCATTTTGCTAAATTACACATTAGTATCTTTTTGAACATTATTGTTGTTTGTCAGGACAACTGCGGAACCACCAATTTACTACATGCCAGCTAAACCAATAATTGATGATCCGGCTATTGCTGAGGAGAACAAGGAAAAGGCATTTCAAGAATGGAAATCTGAACGCAGGGCTGAGCTAACTCAGTTTCAAAAGCAAGTCGAAGAACAGTACATGTCTAATGTTGAGAGGCAGTTGGAAAGGATGCAGAATGCGCGGAATGCACGGAGGGGTAATGGTCCTTCAAACATGCA AGAAATGGACA AGGAACTGGACACGCA CAGGGCGGAGCATGGT CCAAAAACTCGACGAGTTCTTGAGGGTGGCAATGACGATGAGGATGATATGGACGATATGGCCGTGGAAGATGAGCTGATGGATGAAGTCCTTGGCATTAACGAGCCAATCAGCGATGAGCAAACCA AGCCGTCTGAAGAAGCTGCTGATGGTGTTCCGGTGTCTGAGGAAGTGCAATAGGTAATTTGTTTTGTATTGTTGCGAGGTAGGCATCTAGGAGTTCCACATTTGATATCCTTCAGCTGCCCTCATTTTCTGACGCTTGTTGTATGTCTGTTGACGCTTGAGATTTTCCCCGCTGTTATCAAGCCATATATTGTTGCGGGATGTATTGCCGTTGAGCGATATACTCTGTTAATCATTGCATCCTT ]
[-] EMBL CB674209 [ AATTAAATTGAGGGAAGATGCGTTTCTGATTGTGCAAATCTTGATGTTTGATGTTCATAGGGGTTTCTATATCCATTTTGCTAAATTACACATTAGTATCTTTTTGAACATTATTGTTGTTTGTCAGGACAACTGCGGAACCACCAATTTACTACATGCCAGCTAAACCAATAATTGATGATCCGGCTATTGCTGAGGAGAACAAGGAAAAGGCATTTCAAGAATGGAAATCTGAACGCAGGGCTGAGCTAACTCAGTTTCAAAAGCAAGTCGAAGAACAGTACATGTCTAATGTTGAGAGGCAGTTGGAAAGGATGCAGAATGCGCGGAATGCACGGAGGGGTAATGGTCCTTCAAACATGCA AGAAATGGACA AGGAGCTGGACACGCA CAGGGCGGAGCATGGT CCAAAAACTCGACGAGTTCTTGAGGGTGGCAATGACGATGAGGATGATATGGACGATATGGCCGTGGAAGATGAGCTGATGGATGAAGTCCTTGGCATTAACGAGCCAATCAGCGATGAGCAAACCA AGCCGTCTGAAGAAGCTGCTGATGGTGTTCCGGTGTCTGAGGAAGTGCAATAGGTAATTTGTTTTGTATTGTTGCGAGGTAGGCATCTAGGAGTTCCACATTTGATATCCTTCAGCTGCCCTCATTTTCTGACGCTTGTTGTATGTCTGTTGACGCTTGAGATTTTCCCCGCTGTTATCAAGCCATATATTGTTGCGGGATGTATTGCCG ]
[-] EMBL CB651305 [ GGAAGATGCGTTTCTGATTGTGCAAATCTTGATGTTTGATGTTCATAGGGGTTTCTATATCCATTTTGCTAAATTACACATTAGTATCTTTTTGAACATTATTGTTGTTTGTCAGGACAACTGCGGAACCACCAATTTACTACATGCCAGCTAAACCAATAATTGATGATCCGGCTATTGCTGAGGAGAACAAGGAAAAGGCATTTCAAGAATGGAAATCTGAACGCAGGGCTGAGCTAACTCAGTTTCAAAAGCAAGTCGAAGAACAGTACATGTCTAATGTTGAGAGGCAGTTGGAAAGGATGCAGAATGCGCGGAATGCACGGAGGGGTAATGGTCCTTCAAACATGCA AGAAATGGACA AGGAGCTGGACACGCA CAGGGCGGAGCATGGT CCAAAAACTCGACGAGTTCTTGAGGGTGGCAATGACGATGAGGATGATATGGACGATATGGCCGTGGAAGATGAGCTGATGGATGAAGTCCTTGGCATTAACGAGCCAATCAGCGATGAGCAAACCA AGCCGTCTGAAGAAGCTGCTGATGGTGTTCCGGTGTCTGAGGAAGTGCAATAGGTAATTTGTTTTGTATTGTTGCGAGGTAGGCATCTAGGAGTTCCACATTTGATATCCTTCAGCTGCCCTCATTTTCTGACGCTTGTTGTATGTCTGTTGACGCTTGAGATTTTCCCCGCTGTTATCAAGCCATATATTGTTGCGGGATGTATTGCCGTTGAGCGATATACTCTGTTAATCATTGCATCCTTTGAGTTTCTAGTATAAATCGAGCAAT ]
[-] EMBL CB664270 [ TGTTTGATGTTCATAGGGGTTTCTATATCCATTTTGCTAAATTACACATTAGTATCTTTTTGAACATTATTGTTGTTTGTCAGGACAACTGCGGAACCACCAATTTACTACATGCCAGCTAAACCAATAATTGATGATCCGGCTATTGCTGAGGAGAACAAGGAAAAGGCATTTCAAGAATGGAAATCTGAACGCAGGGCTGAGCTAACTCAGTTTCAAAAGCAAGTCGAAGAACAGTACATGTCTAATGTTGAGAGGCAGTTGGAAAGGATGCAGAATGCGCGGAATGCACGGAGGGGTAATGGTCCTTCAAACATGCA AGAAATGGACA AGGAGCTGGACACGCA CAGGGCGGAGCATGGT CCAAAAACTCGACGAGTTCTTGAGGGTGGCAATGACGATGAGGATGATATGGACGATATGGCCGTGGAAGATGAGCTGATGGATGAAGTCCTTGGCATTAACGAGCCAATCAGCGATGAGCAAACCA AGCCGTCTGAAGAAGCTGCTGATGGTGTTCCGGTGTCTGAGGAAGTGCAATAGGTAATTTGTTTTGTATTGTTGCGAGGTAGGCATCTAGGAGTTCCACATTTGATATCCTTCAGCTGCCCTCATTTTCTGACGCTTGTTGTATGTCTGTTGACGCTTGAGATTTTCCCCGCTGTTATCAAGCCATATATTGTTGCGGGATGTATTGCCGTTGAGCGATATACTCTGTTAATCATTGCATCCTTTGCGT ]
[+] EMBL BI805231 [ CTAATGTTGAGA GCAGTTGGAAAGGATGCAGAATGCGCGGAATGCACGGAGGGGTAATGGTCCTTCAAACATGCACAGAAATGGACACAGGAGCTGGACACGCACCAGGGCGGAGCATGGTCCCAAAAACTCGACGAGTTCTTGAGGGTGGC ATGACGATGAGGATGATATGGACGATATGGCCGTGGAAGATGAGCTGATGGATGAAGTCCTTGGCATTAACGAGCCAATCAGCGATGAGCAAACCACAGCCGTCTGAAGAAGCTGCTGATGGTGTTCCGGTGTCTGAGGAAGTGCAATAGGTAATTTGTTTTGTATTGTTGCGAGGTAGGCATCTAGGAGTTCCACATTTGATATCCTTCAGCTGCCCTCATTTTCTGACGCTTGTTGTATGTCTGTTGACGCTTGAGATTTTCCCCGCTGTTATCAAGCCATATATTGTTGCGGGATGTATTGCCGTTGAGCGATATACTCTGTTAATCATTGCATCCTTTGCGTTTCTAGTAAAAAaaaaa ]
[+] EMBL CF307977 [ GCTTGTTGTACGTCTGTTGACGCTTGAGATTTTCCCCGCTGTTATCAAGCCATATATTGTTGCGGGATGTATTGCCGTTGAGCGATATACTCTGTTAATCATTGCATCCTTTGCGTTTCTAGTATAAATCGAGCAATTTAC ]
[-] EMBL CF326235 [ GTTGACGCTTGAGATTTTCCCCGCTGTTATCAAGCCATAAATTGTTGCGGGATGTATTGCCGTTGAGCGATATACTTTGTTAATCATTGCATCCTTTGGGTTTTTAGTATAAATCGAGCAATTTACTGATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCCGGCACGAGGC]
consensusID : consensus_14291#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 796 fasta sequence
[TGCGGCAGCAAGAGCGAGAGCAAGCAATAGAGAAGCGTAAGCGTGATATGATGCTGCGTGCTCGAGTAGCTGCTAAGGCAGAAGAAAAGAGGTTGG-AGCTGTTATACATGCAGTGGGC-TGAGCATCACAAAAAGCTGTCCAATTTCTTAAGGACAACTGCGGAACCACCAATTTACTACATGCCAGCTAAACCAATAATTGATGATCCGGCTATTGCTGAGGAGAACAAGGAAAAGGCATTTCAAGAATGGAAATCTGAACGCAGGGCTGAGCTAACTCAGTTTCAAAAGCAAGTCGAAGAACAGTACATGTCTAATGTTGAGAGGCAGTTGGAAAGGATGCAGAATGCGCGGAATGCACGGAGGGGTAATGGTCCTTCAAACATGCAAGAAATGGACAAGGAGCTGGACACGCACAGGGCGGAGCATGGTCCAAAAACTCGACGAGTTCTTGAGGGTGGCAATGACGATGAGGATGATATGGACGATATGGCCGTGGAAGATGAGCTGATGGATGAAGTCCTTGGCATTAACGAGCCAATCAGCGATGAGCAAACCAAGCCGTCTGAAGAAGCTGCTGATGGTGTTCCGGTGTCTGAGGAAGTGCAATAGGTAATTTGTTTTGTATTGTTGCGAGGTAGGCATCTAGGAGTTCCACATTTGATATCCTTCAGCTGCCCTCATTTTCTGACGCTTGTTGTATGTCTGTTGACGCTTGAGATTTTCCCCGCTGTTATCAAGCCATATATTGTTGCGGGATGTATTGCCGTTGAGCGATATACTCTGGAAAAAAAGGA]
[+] EMBL CB680576 [TGCGGCAGCAAGAGCGAGAGCAAGCAATAGAGAAGCGTAAGCGTGATATGATGCTGCGTGCTCGAGTAGCTGCTAAGGCAGAAGAAAAGAGGTTGG AGCTGTTATACATGCAGTGGGC TGAGCATCACAAAAAGCTGTCCAATTTCTTAAGGACAACTGCGGAACCACCAATTTACTACATGCCAGCTAAACCAATAATTGATGATCCGGCTATTGCTGAGGAGAACAAGGAAAAGGCATTTCAAGAATGGAAATCTGAACGCAGGGCTGAGCTAACTCAGTTTCAAAAGCAAGTCGAAGAACAGTACATGTCTAATGTTGAGAGGCAGTTGGAAAGGATGCAGAATGCGCGGAATGCACGGAGGGGTAATGGTCCTTCAAACATGCAAGAAATGGACAAGGAGCTGGACACGCACAGGGCGGAGCATGGTCCAAAAACTCGACGAGTTCTTGAGGGTGGCAATGACGATGAGGATGATATGGACGATATGGCCGTGGAAGATGAGCTGATGGATGAAGTCCTTGGCATTAACGAGCCAATCAGCGATGAGCAAACCAAGCCGTCTGAAGAAGCTGCTGATGGTGTTCCGGTGTCTGAGGAAGTGCAATAGGTAATTTGTTTTGTATTGTTGCGAGGTAGGCATCTAGGAGTTCCACATTTGATATCCTTCAGCTGCCCTCATTTTCTGACGCTTGTTGTATGTCTGTTGACGCTTGAGATTTTCCCCGCTGTTATCAAGCCATATATTGTTGCGGGATGTATTGCCGTTGAGCGAT ]
[-] EMBL CB680577 [ AGAGCAAGCAATAGAGAAGCGTAAGCGTGATATGATGCTGCGTGCTCGAGTAGCTGCTAAGGCAGAAGAAAAGAGGTTGG AGCTGTTATACATGCAGTGGGC TGAGCATCACAAAAAGCTGTCCAATTTCTTAAGGACAACTGCGGAACCACCAATTTACTACATGCCAGCTAAACCAATAATTGATGATCCGGCTATTGCTGAGGAGAACAAGGAAAAGGCATTTCAAGAATGGAAATCTGAACGCAGGGCTGAGCTAACTCAGTTTCAAAAGCAAGTCGAAGAACAGTACATGTCTAATGTTGAGAGGCAGTTGGAAAGGATGCAGAATGCGCGGAATGCACGGAGGGGTAATGGTCCTTCAAACATGCAAGAAATGGACAAGGAGCTGGACACGCACAGGGCGGAGCATGGTCCAAAAACTCGACGAGTTCTTGAGGGTGGCAATGACGATGAGGATGATATGGACGATATGGCCGTGGAAGATGAGCTGATGGATGAAGTCCTTGGCATTAACGAGCCAATCAGCGATGAGCAAACCAAGCCGTCTGAAGAAGCTGCTGATGGTGTTCCGGTGTCTGAGGAAGTGCAATAGGTAATTTGTTTTGTATTGTTGCGAGGTAGGCATCTAGGAGTTCCACATTTGATATCCTTCAGCTGCCCTCATTTTCTGACGCTTGTTGTATGTCTGTTGACGCTTGAGATTTTCCCCGCTGTTATCAAGCCATATATTGTAGGGGGATGTATTGCCGTTGAGCGATATACTCTGGAAAAAAAGGA]
[+] EMBL AU085965 [ AGNCAGAAGAAAAGAGGTTGGAANCTGTTATACATGCATTGGGCTTAAGCATCNCAAAAAGCTGTCCAATTTCTTAAGGACAACTGCGGAACCACCAATTTACTACATGCCAGCTAAACCAATAATTGATGATCCGGCTATTGCTGAGGAGANCAAGGAAAAGGCATTTCAAGAATGGAAATCTGAACGCAGGGCTGAGCTAACTCAGTTTCAAAAGCAAGTCGAAGAACAGTACATGTCTAATGTTGAGAGGCAGTTGGAAAGGATGCAGAATGCGCGGAATGCACGGAGGGGTAATGGTCCTTCAAACATGCAAGAAATGGACAAGGAGCTGGACACGCACAGGGCGGAGCATGGTCCAAAAACTCGACGAGTTCTTGAGGGTGGCAATGACGATGAGGATGATATGGACGATATGGCCGTGGAAGATGAGCTGATGGATGAAGTCCTTGGCATTAACGAGCCAATCAGCGATGAGCAAACCAAGCCGTCTGAAGAAGCTGCTGATGGTGTTCCGGTGTCTGAGGAAGTGCAATAGGTAATTTGTTTTGTATTGTTGCGAGGTAGGCATCTAGGAGTTCCACATTTGATATCCTTCAGCTGCCCTCATTTTCTGACGCTTGTTGTATGTCTGTTGACGCTTGAGATTTTCCCCGCTGTTATCAAGCCATATATTGTTGCGGGAaaaaaaaaa ]
consensusID : consensus_14291#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 378 fasta sequence
[CAGCAAGAGGACAAAAAACTGTCCAACACAGAGGCTTATATGCGCAGATCAGAGGTTCAGCGAAAGGCTGATCAAAAGGCTCGTGAGGAAAGTGAAAGGTTGCGGCANAAGAAGCGAGAGCAAGCAATAGAGAAGCGTAANNNGNATATGATGCTGCGTGCTCGAGTAGCTGCTAAGGCAGAAGAAAAGAGGTTGGAGCTGTTATACATGCAGTGGGCTGAGCATCACAAAAAGCTGTCCAATTTCTTAAGGNCAACTGCGGAACCACCAATTTACTACAATGCCAGCTTAANCCATTAATTGATGATCCCGCTATTTCNTAGGGGGACCAAGGGAAANGCATTTCAAGGATTGGGAATTTNAACCGAAGGCTTTGGC]
[+] EMBL C99585 [CAGCAAGAGGACAAAAAACTGTCCAACACAGAGGCTTATATGCGCAGATCAGAGGTTCAGCGAAAGGCTGATCAAAAGGCTCGTGAGGAAAGTGAAAGGTTGCGGCANAAGAAGCGAGAGCAAGCAATAGAGAAGCGTAANNNGNATATGATGCTGCGTGCTCGAGTAGCTGCTAAGGCAGAAGAAAAGAGGTTGGAGCTGTTATACATGCAGTGGGCTGAGCATCACAAAAAGCTGTCCAATTTCTTAAGGNCAACTGCGGAACCACCAATTTACTACAATGCCAGCTTAANCCATTAATTGATGATCCCGCTATTTCNTAGGGGGACCAAGGGAAANGCATTTCAAGGATTGGGAATTTNAACCGAAGGCTTTGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14291#0 CTCCAACCCCCCGCGCAGCCGAAGGAATCCTCGACGGCGACGACGATGGCCGCCGCGACG 60
consensus_14291#1 ------------------------------------------------------------
consensus_14291#2 ------------------------------------------------------------
consensus_14291#0 GAGAAGACGGCCGAGGAGATCCGCCGCGAGCTCCAGGAGCTCCAGCGCCAGCACCGCGAG 120
consensus_14291#1 ------------------------------------------------------------
consensus_14291#2 ------------------------------------------------------------
consensus_14291#0 ATCAGCGAGCGCCTCCGAGACCCCCGCGGCCTCCGCCGCGGCGCGCCCGCCGCTGCAGGA 180
consensus_14291#1 ------------------------------------------------------------
consensus_14291#2 ------------------------------------------------------------
consensus_14291#0 CCCGGCGGGCCCCGCCCACTTCGCGGATTCCCTAGACCAGCTGTGGATTTGGTGGACCAG 240
consensus_14291#1 ------------------------------------------------------------
consensus_14291#2 ------------------------------------------------------------
consensus_14291#0 TCTGCGCCTAAGCGGAGGATTCTATCTGCAGTGGTTAAAGTGGAGGATACTGAAGCTAAG 300
consensus_14291#1 ------------------------------------------------------------
consensus_14291#2 ------------------------------------------------------------
consensus_14291#0 GAGGATGTCAAGAAGGAAGCGGAGGCAGAGGGGCCGGAGGGCGGTTCGGCTGCTGCTGAA 360
consensus_14291#1 ------------------------------------------------------------
consensus_14291#2 ------------------------------------------------------------
consensus_14291#0 GGCGGTGAGAGGAGGGATGGTGGGTTCAGGAGGGATGGGAGCCAGCGCATGCCGAGGAGG 420
consensus_14291#1 ------------------------------------------------------------
consensus_14291#2 ------------------------------------------------------------
consensus_14291#0 GAGTTTGATATGTCATTGCCAGAACCTCTCCCGAGGGAATTTCCCAAGGATGAGGATCAA 480
consensus_14291#1 ------------------------------------------------------------
consensus_14291#2 ------------------------------------------------------------
consensus_14291#0 AGCCTTGTGAAGAGGAACAAGAGGATGCTGGGGAAGCTTCTTGTCGGTACATTAGAGAAA 540
consensus_14291#1 ------------------------------------------------------------
consensus_14291#2 ------------------------------------------------------------
consensus_14291#0 TTTCAGCAAGAGGACAAAAAACTGTCCAACACAGAGGCTTATATGCGCAGATCAGAGGTT 600
consensus_14291#1 ------------------------------------------------------------
consensus_14291#2 ---CAGCAAGAGGACAAAAAACTGTCCAACACAGAGGCTTATATGCGCAGATCAGAGGTT 57
consensus_14291#0 CAGCGAAAGGCTGATCAAAAGGCTCGTGAGGAAAGTGAAAGGTTGCGGCAGCAAGAGCGA 660
consensus_14291#1 -------------------------------------------TGCGGCAGCAAGAGCGA 17
consensus_14291#2 CAGCGAAAGGCTGATCAAAAGGCTCGTGAGGAAAGTGAAAGGTTGCGGCANAAGAAGCGA 117
******* * *****
consensus_14291#0 GAGCAAGCAATAGAGAAGCGTAAGCGTGATATGATGCTGCGTGCTCGAGTAGCTGCTAAG 720
consensus_14291#1 GAGCAAGCAATAGAGAAGCGTAAGCGTGATATGATGCTGCGTGCTCGAGTAGCTGCTAAG 77
consensus_14291#2 GAGCAAGCAATAGAGAAGCGTAANNNGNATATGATGCTGCGTGCTCGAGTAGCTGCTAAG 177
*********************** ********************************
consensus_14291#0 GCAGAAGAAAAGAGGTTGGAGCTGTTATACATGCAGTGGGCTGAGCATCACAAAAAGCTG 780
consensus_14291#1 GCAGAAGAAAAGAGGTTGGAGCTGTTATACATGCAGTGGGCTGAGCATCACAAAAAGCTG 137
consensus_14291#2 GCAGAAGAAAAGAGGTTGGAGCTGTTATACATGCAGTGGGCTGAGCATCACAAAAAGCTG 237
************************************************************
consensus_14291#0 TCCAATTTCTTAAGGTTATTTTTATTCCTGGTCCAAAAGTATCCATATTGACAATTAAAT 840
consensus_14291#1 TCCAATTTCTTAAGG--------------------------------------------- 152
consensus_14291#2 TCCAATTTCTTAAGG--------------------------------------------- 252
***************
consensus_14291#0 TGAGGGAAGATGCGTTTCTGATTGTGCAAATCTTGATGTTTGATGTTCATAGGGGTTTCT 900
consensus_14291#1 ------------------------------------------------------------
consensus_14291#2 ------------------------------------------------------------
consensus_14291#0 ATATCCATTTTGCTAAATTACACATTAGTATCTTTTTGAACATTATTGTTGTTTGTCAGG 960
consensus_14291#1 ------------------------------------------------------------
consensus_14291#2 ------------------------------------------------------------
consensus_14291#0 ACAACTGCGGAACCACCAATTTACTACA-TGCCAGCT-AAACCAATAATTGATGATCCGG 1018
consensus_14291#1 ACAACTGCGGAACCACCAATTTACTACA-TGCCAGCT-AAACCAATAATTGATGATCCGG 210
consensus_14291#2 NCAACTGCGGAACCACCAATTTACTACAATGCCAGCTTAANCCATTAATTGATGATCCCG 312
*************************** ******** ** *** ************* *
consensus_14291#0 CTATTGCTGAGGAGAAC-AAGGAAAAGGCATTTCAAGAAT-GGAAATCTGAACGCAGGGC 1076
consensus_14291#1 CTATTGCTGAGGAGAAC-AAGGAAAAGGCATTTCAAGAAT-GGAAATCTGAACGCAGGGC 268
consensus_14291#2 CTATTTCNTAGGGGGACCAAGGGAAANGCATTTCAAGGATTGGGAATTTNAACCGAAGGC 372
***** * *** * ** **** *** ********** ** ** *** * *** * ***
consensus_14291#0 TGAGCTAACTCAGTTTCAAAAGCAAGTCGAAGAACAGTACATGTCTAATGTTGAGAGGCA 1136
consensus_14291#1 TGAGCTAACTCAGTTTCAAAAGCAAGTCGAAGAACAGTACATGTCTAATGTTGAGAGGCA 328
consensus_14291#2 TTTGGC------------------------------------------------------ 378
* *
consensus_14291#0 GTTGGAAAGGATGCAGAATGCGCGGAATGCACGGAGGGGTAATGGTCCTTCAAACATGCA 1196
consensus_14291#1 GTTGGAAAGGATGCAGAATGCGCGGAATGCACGGAGGGGTAATGGTCCTTCAAACATGCA 388
consensus_14291#2 ------------------------------------------------------------
consensus_14291#0 AGAAATGGACAAGGAGCTGGACACGCACAGGGCGGAGCATGGTCCAAAAACTCGACGAGT 1256
consensus_14291#1 AGAAATGGACAAGGAGCTGGACACGCACAGGGCGGAGCATGGTCCAAAAACTCGACGAGT 448
consensus_14291#2 ------------------------------------------------------------
consensus_14291#0 TCTTGAGGGTGGCAATGACGATGAGGATGATATGGACGATATGGCCGTGGAAGATGAGCT 1316
consensus_14291#1 TCTTGAGGGTGGCAATGACGATGAGGATGATATGGACGATATGGCCGTGGAAGATGAGCT 508
consensus_14291#2 ------------------------------------------------------------
consensus_14291#0 GATGGATGAAGTCCTTGGCATTAACGAGCCAATCAGCGATGAGCAAACCAAGCCGTCTGA 1376
consensus_14291#1 GATGGATGAAGTCCTTGGCATTAACGAGCCAATCAGCGATGAGCAAACCAAGCCGTCTGA 568
consensus_14291#2 ------------------------------------------------------------
consensus_14291#0 AGAAGCTGCTGATGGTGTTCCGGTGTCTGAGGAAGTGCAATAGGTAATTTGTTTTGTATT 1436
consensus_14291#1 AGAAGCTGCTGATGGTGTTCCGGTGTCTGAGGAAGTGCAATAGGTAATTTGTTTTGTATT 628
consensus_14291#2 ------------------------------------------------------------
consensus_14291#0 GTTGCGAGGTAGGCATCTAGGAGTTCCACATTTGATATCCTTCAGCTGCCCTCATTTTCT 1496
consensus_14291#1 GTTGCGAGGTAGGCATCTAGGAGTTCCACATTTGATATCCTTCAGCTGCCCTCATTTTCT 688
consensus_14291#2 ------------------------------------------------------------
consensus_14291#0 GACGCTTGTTGTATGTCTGTTGACGCTTGAGATTTTCCCCGCTGTTATCAAGCCATATAT 1556
consensus_14291#1 GACGCTTGTTGTATGTCTGTTGACGCTTGAGATTTTCCCCGCTGTTATCAAGCCATATAT 748
consensus_14291#2 ------------------------------------------------------------
consensus_14291#0 TGTTGCGGGATGTATTGCCGTTGAGCGATATACTCTGTTAATCATTGCATCCTTTGCGTT 1616
consensus_14291#1 TGTTGCGGGATGTATTGCCGTTGAGCGATATACTCTGGAAAAAAAGGA------------ 796
consensus_14291#2 ------------------------------------------------------------
consensus_14291#0 TCTAGTATAAATCGAGCAATTTACTGATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1676
consensus_14291#1 ------------------------------------------------------------
consensus_14291#2 ------------------------------------------------------------
consensus_14291#0 AAACTCCGGCACGAGGC 1693
consensus_14291#1 -----------------
consensus_14291#2 -----------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||