|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14294#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1467 fasta sequence
[CTTTTTTTTTCTGATTTTAACTTGGATCTCGTGTAAATTTTGCATCCACATTAAACTCTTATGAGGAATTCACAAGAATTGTTATGGTTGCTCTCTTTTCAATATTGACTTGAAAGTGACTTTATGGTTGCGAAAAAGGGACTTTCTTTCTTTTCTTTGTTTTTAACAATTTTTTCTTGTGATAGAGTAGCTTATTTGAGATATGCAAGTATGTAATTCAAATTATTGGCTGTATAGGACAGTCCTCTTGCACTGGCACAAGCTCATGAAACCCGAGACAAGCTGAAGGCTGCACACTCAGAGTTAGCCGAGGAGGGGGCCGTTGAGATTGTCATCATTAAGACCACAGGAGACATGATCTTGGACAAACCCCTGGCAGATATAGGTGGCAAGGGTTTATTCACCAAGGAGATCGATGATGCACTTTTGCAGGGAAGGATTGACATTGCCGTCCACTCGATGAAAGATGTTCCAACATATTTACCAGAAGGCACGATATTGCCTTGTAATCTCCCACGGGAAGATGTGAGAGATGCATTCATATGCTTGACTGCAAGTTCCCTTGCGGAGCTTCCTGCTGGCAGTGTTGTTGGAAGTGCTTCTCTGCGTAGACAATCTCAAATTCTCTACAAATATCCATCACTCAAAGTTGTTAACTTCAGAGGAAATGTTCAAACACGATTGAGGAAACTCAAAGAAGGAGATGTCCATGCTACATTGTTGGCTCTAGCTGGACTAAAACGCTTAAACATGGCAGAAACTGCGACATCTGTATTGTCAGTGGACGAAATGCTTCCAGCAGTTGCTCAAGGTGCTATTGGAATAGCTTGCAGAAGCAGTGATGACACAATGATGAATTACTTGTCCTCATTGAACCATGAAGATACCAGATTAGCTGTTGCATGTGAAAGAGAATTCTTGTCAGTTCTTGATGGCAACTGCCGAACTCCAATTGCGGCATATGCTTCTCGTGACAAGGATGGGAATTGTTCATTCCGAGGGCTATTGGCTTCACCTGATGGATCTACAGTATATGAGACTTCGAGAACTGGACCTTATGATTTCGATATCATGGTTGAGATGGGTAAAGATGCTGGCCACGAGCTGAAAGCAAAGGCTGGCCCTGGCTTCTTTGATAGCTTGCAATGAAAATAGAAATCCACCATTGGCCAACTAGAGTGTTGAGTGGATTATTTTGATTTTTTTTTGTACCCTAGTTCTACTAGAGGATTGTACCACAATGTTGAGCTGTCTCATTCAGATCTGTATCTTTGCTTCTTTTAGCAAGGTGAGCTAGAATTTAGAACGTGGTTCCACGGTTATTGTAATCCCTTGTATTTCCAATGAATTCTGGAAGAGGCTTTTGCGGCCAATTATGTTGTAACTTTGTAATTTGATGTAATTTTGCAGATGCTTTGTTTTCAAAATAATTTGATTCTGAAATTGT--A-------AAAAAAAAAAAAACTAAAA]
[+] EMBL AK102265 [CTTTTTTTTTCTGATTTTAACTTGGATCTCGTGTAAATTTTGCATCCACATTAAACTCTTATGAGGAATTCACAAGAATTGTTATGGTTGCTCTCTTTTCAATATTGACTTGAAAGTGACTTTATGGTTGCGAAAAAGGGACTTTCTTTCTTTTCTTTGTTTTTAACAATTTTTTCTTGTGATAGAGTAGCTTATTTGAGATATGCAAGTATGTAATTCAAATTATTGGCTGTATAGGACAGTCCTCTTGCACTGGCACAAGCTCATGAAACCCGAGACAAGCTGAAGGCTGCACACTCAGAGTTAGCCGAGGAGGGGGCCGTTGAGATTGTCATCATTAAGACCACAGGAGACATGATCTTGGACAAACCCCTGGCAGATATAGGTGGCAAGGGTTTATTCACCAAGGAGATCGATGATGCACTTTTGCAGGGAAGGATTGACATTGCCGTCCACTCGATGAAAGATGTTCCAACATATTTACCAGAAGGCACGATATTGCCTTGTAATCTCCCACGGGAAGATGTGAGAGATGCATTCATATGCTTGACTGCAAGTTCCCTTGCGGAGCTTCCTGCTGGCAGTGTTGTTGGAAGTGCTTCTCTGCGTAGACAATCTCAAATTCTCTACAAATATCCATCACTCAAAGTTGTTAACTTCAGAGGAAATGTTCAAACACGATTGAGGAAACTCAAAGAAGGAGATGTCCATGCTACATTGTTGGCTCTAGCTGGACTAAAACGCTTAAACATGGCAGAAACTGCGACATCTGTATTGTCAGTGGACGAAATGCTTCCAGCAGTTGCTCAAGGTGCTATTGGAATAGCTTGCAGAAGCAGTGATGACACAATGATGAATTACTTGTCCTCATTGAACCATGAAGATACCAGATTAGCTGTTGCATGTGAAAGAGAATTCTTGTCAGTTCTTGATGGCAACTGCCGAACTCCAATTGCGGCATATGCTTCTCGTGACAAGGATGGGAATTGTTCATTCCGAGGGCTATTGGCTTCACCTGATGGATCTACAGTATATGAGACTTCGAGAACTGGACCTTATGATTTCGATATCATGGTTGAGATGGGTAAAGATGCTGGCCACGAGCTGAAAGCAAAGGCTGGCCCTGGCTTCTTTGATAGCTTGCAATGAAAATAGAAATCCACCATTGGCCAACTAGAGTGTTGAGTGGATTATTTTGATTTTTTTTTGTACCCTAGTTCTACTAGAGGATTGTACCACAATGTTGAGCTGTCTCATTCAGATCTGTATCTTTGCTTCTTTTAGCAAGGTGAGCTAGAATTTAGAACGTGGTTCCACGGTTATTGTAATCCCTTGTATTTCCAATGAATTCTGGAAGAAGCTTTTGCGGCCAATTATGTTGTAACTTTGTAATTTGATGTAATTTTGCAGATGCTTTGTTTTCAAAATAATTTGATTCTGAAATTGT ]
[-] EMBL CB653329 [ CACTCAAAGTTGTTAACTTCAGAGGAAATGTTCAAACACGATTGAGGAAACTCAAAGAAGGAGATGTCCATGCTACATTGTTGGCTCTAGCTGGACTAAAACGCTTAAACATGGCAGAAACTGCGACATCTGTATTGTCAGTGGACGAAATGCTTCCAGCAGTTGCTCAAGGTGCTATTGGAATAGCTTGCAGAAGCAGTGATGACACAATGATGAATTACTTGTCCTCATTGAACCATGAAGATACCAGATTAGCTGTTGCATGTGAAAGAGAATTCTTGTCAGTTCTTGATGGCAACTGCCGAACTCCAATTGCGGCATATGCTTCTCGTGACAAGGATGGGAATTGTTCATTCCGAGGGCTATTGGCTTCACCTGATGGATCTACAGTATATGAGACTTCGAGAACTGGACCTTATGATTTCGATATCATGGTTGAGATGGGTAAAGATGCTGGCCACGAGCTGAAAGCAAAGGCTGGCCCTGGCTTCTTTGATAGCTTGCAATGAAAATAGAAATCCACCATTGGCCAACTAGAGTGTTGAGTGGATTATTTTGA TTTTTTTTGTACCCTAGTTCTACTAGAGGATTGTACCACAATGTTGAGCTGTCTCATTCAGATCTGTATCTTTGCTTCTTTTAGCAAGGTGAGCTAGAATTTAGAACGTGGTTCCACGGTTATTGTAATCCCTTGTATTTCCAATGAATTCTGGAAGAGGCTTTTGCGGCCAATTATGTTGTAACTTTGTAATTTGATGTAATTTTGCAGATGCTTTGTTTTCAAAATAAT ]
[-] EMBL CB647061 [ GAGATGTCCATGCTACATTGTTGGCTCTAGCTGGACTAAAACGCTTAAACATGGCAGAAACTGCGACATCTGTATTGTCAGTGGACGAAATGCTTCCAGCAGTTGCTCAAGGTGCTATTGGAATAGCTTGCAGAAGCAGTGATGACACAATGATGAATTACTTGTCCTCATTGAACCATGAAGATACCAGATTAGCTGTTGCATGTGAAAGAGAATTCTTGTCAGTTCTTGATGGCAACTGCCGAACTCCAATTGCGGCATATGCTTCTCGTGACAAGGATGGGAATTGTTCATTCCGAGGGCTATTGGCTTCACCTGATGGATCTACAGTATATGAGACTTCGAGAACTGGACCTTATGATTTCGATATCATGGTTGAGATGGGTAAAGATGCTGGCCACGAGCTGAAAGCAAAGGCTGGCCCTGGCTTCTTTGATAGCTTGCAATGAAAATAGAAATCCACCATTGGCCAACTAGAGTGTTGAGTGGATTATTTTGA TTTTTTTTGTACCCTAGTTCTACTAGAGGATTGTACCACAATGTTGAGCTGTCTCATTCAGATCTGTATCTTTGCTTCTTTTAGCAAGGTGAGCTAGAATTTAGAACGTGGTTCCACGGTTATTGTAATCCCTTGTATTTCCAATGAATTCTGGAAGAGGCTTTTGCGGCCAATTATGTTGTAACTTTGTAATTTGATGTAATTGTGCAGATGCTTTGTTTTCAAAATAATTTGATTCT ]
[-] EMBL CA762824 [ TGGACGAAATGCTTCCAGCAGTTGCTCAAGGTGCTATTGGAATAGCTTGCAGAAGCAGTGATGACCCAATGATGAATTACTTGTCCTCATTGAACCATGAAGATACCAGACTAGCTGTTGCATGTGAAAGAGAATTCTTGTCAGTTCTTGATGGCAACTGCCGAACTCCAATTGCGGCATATGCTTCTCGTGACAAGGATGGGAATTGTTCGTTCCGAGGGCTATTGGCTTCACCTGATGGATCTACAGTATATGAGACTTCGAGAACTGGACCTTATGATTTCGATATCATGGTTGAGATGGGTAAAGATGCTGGCCCCGAGCTGAAAGCAAAGGCTGGCCCTGGCTTCTTTGATAGCTTGCAATGAAAATAGAAATCCCCCATTGGCCAACTAGAGTGTTGAGTGGATTATTTTGATTTTTTTTTGTACCCTAGTTCTACTAGAGGATTGTACCCCAATGTTGAGCTGTCTCATTCAGATCTGTATCTTTGCTTCTTTTAGCAAGGTGAGCTAGAATTTAGAACGTGGTTCCCCGGTTATTGTAATCTCTTGTATTTCCAATGAATTCTGGAAGAGGCTTTTGCGGCCAATTATGTTGTAACTTTGTAATTTGATGTAATTTTGCAGATGCTTTGTTTTCAAAATAATTTGATTCTGAAATTGTTGATTGTTGTAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF324666 [ GCATATGCTTCTCGTGACAAGGATGGGAATTGTTCATTCCGAGGGCTATTGGCTTCACCTGATGGATCTACAGTATATGAGACTTCGAGAACTGGACCTTATGATTTCGATATCATGGTTGAGATGGGTAAAGATGCTGGCCACGAGCTGAAAGCAAAGGCTGGCCCTGGCTTCTTTGATAGCTTGCAATGAAAATAGAAATCCACCATTGGCCAACTAGAGTGTTGAGTGGATTATTTTGATTTTTTTTTGTACCCTAGTTCTACTAGAGGATTGTACCACAATGTTGAGCTGTCTCATTCAGATCTGTATCTTTGCTTCTTTTAGCAAGGTGAGCTAGAATTTAGAACGTGGTTCCACGGTTATTGTAATCCCTTGTATTTCCAATGAATTCTGGAAGAGGCTTTTGCGGCCAATTATGTTGTAACTTTGTAATTTGATGTAATTTTGCAGATGCTTTGTTTTCAAAATAATTTGATTTTGAAAAAAA A AAAAAAAAAAAAACT ]
[-] EMBL CF325616 [ ATGGGTAAAGATGCTGGCCACGAGCTGAAAGCAAAGGCTGGCCCTGGCTTCTTTGATAGCTTGCAATGAAAATAGAAATCCACCATTGGCCAACTAGAGTGTTGAGTGGATTATTTTGATTTTTTTTTGTACCCTAGTTTTACTAGAGGATTGTACCACAATGTTGAGCTGTTTCATTCAGATCTGTATCTTTGCTTTTTTTAGCAAGGTGAGCTAGAATTTAGAACGTGGTTCCACGGTTATTGTAATCCCTTGTATTTCCAATGAATTTTGGAAGAGGCTTTTGCGGCCAATTATGTTGTAACTTTGTAATTTGATGTAATTTTGCAGATGCTTTGTTTTCAAAATAATTTGATTTTGAAAAAAA A AAAAAAAAAAAAACT ]
consensusID : consensus_14294#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1404 fasta sequence
[GTCTCCTCCCCCTCCCTCTCGCTCGCATCTTCCCCGGAGATGCCGCCGCCGCCGAGATGCGCCGCCACCACCGCCCACCACTCCCTCCTCGGCTCGCCCACCTGCCTCGCGCGCCCGCGGCGGCGGTGCTGCCCCGTGCGCGCCGCCGTCGCCGTCCAGGCCGAGGCGCAGGCCAAGGTCTCGCTCATCCGGATTGGCACCCGCGGG-----AGTCCTCTTGCACTGGCACAAGCTCATGAAACCCGAGACAAGCTGAAGGCTGCACACTCAGAGTTAGCCGAGGAGGGGGCCGTTGAGATTGTCATCATTAAGACCACAGGAGACATGATCTTGGACAAACCCCTGGCAGATATAGGTGGCAAGGGTTTATTCACCAAGGAGATCGATGATGCACTTTTGCAGGGAAGGATTGACATTGCCGTCCACTCGATGAAAGATGTTCCAACATATTTACCAGAAGGCACGATATTGCCTTGTAATCTCCCACGGGAAGATGTGAGAGATGCATTCATATGCTTGACTGCAAGTTCCCTTGCGGAGCTTCCTGCTGGCAGTGTTGTTGGAAGTGCTTCTCTGCGTAGACAATCTCAAATTCTCTACAAATATCCATCACTCAAAGTTGTTAACTTCAGAGGAAATGTTCAAACACGATTGAGGAAACTCAAAGAAGGAGATGTCCATGCTACATTGTTGGCTCTAGCTGGACTAAAACGCTTAAACATGGCAGAAACTGCGACATCTGTATTGTCAGTGGACGAAATGCTTCCAGCAGTTGCT-CAAGGTGCTATTGGAATAGCTTGCAGAAGCAGTGATGACACAATGATGAATTACTTGTCCTCATTGAACCATGAAGATACCAGATTAGCTGTTGCATGTGAAAGAGAATTCTTGTCAGTTCTTGATGGCAACTGCCGAACTCCAATTGCGGCATATGCTTCTCGTGACAAGGATGGGAATTGTTCATTCCGAGGGCTATTGGC-TTCACCTGATGGATCTACAGTATATGAGACTTCGAGAACTGGACCTTATGATTTCGATATCATGGTTGAGATGGGTAAAGATGCTGGCCACGAGCTGAAAGCAAAGGCTGGCCCTGGCTTCTTTGATAGCTTGCAATGAAAATAGAAATCCACCATTGGCCAACTAGAGTGTTGAGTGGATTATTTTGATTTTTTTTTGTACCCTAGTTCTACTAGAGGATTGTACCACAATGTTGAGCTGTCTCATTCAGATCTGTATCTTTGCTTCTTTTAGCAAGGTGAGCTAGAATTTAGAACGTGGTTCCACGGTTATTGTAATCCCTTGTATTTCCAATGAATTCTGGAAGAGGCTTTTGCGGCCAATTATGTTGTAACTTTGTAATTTGATGTAATTTTGCAGATGCTTTGTTTTCAAAATAAAAAAGGG]
[+] EMBL AK060914 [GTCTCCTCCCCCTCCCTCTCGCTCGCATCTTCCCCGGAGATGCCGCCGCCGCCGAGATGCGCCGCCACCACCGCCCACCACTCCCTCCTCGGCTCGCCCACCTGCCTCGCGCGCCCGCGGCGGCGGTGCTGCCCCGTGCGCGCCGCCGTCGCCGTCCAGGCCGGGGCGCAGGCCAAGGTCTCGCTCATCCGGATTGGCACCCGCGGG AGTCCTCTTGCACTGGCACAAGCTCATGAAACCCGAGACAAGCTGAAGGCTGCACACTCAGAGTTAGCCGAGGAGGGGGCCGTTGAGATTGTCATCATTAAGACCACAGGAGACATGATCTTGGACAAACCCCTGGCAGATATAGGTGGCAAGGGTTTATTCACCAAGGAGATCGATGATGCACTTTTGCAGGGAAGGATTGACATTGCCGTCCACTCGATGAAAGATGTTCCAACATATTTACCAGAAGGCACGATATTGCCTTGTAATCTCCCACGGGAAGATGTGAGAGATGCATTCATATGCTTGACTGCAAGTTCCCTTGCGGAGCTTCCTGCTGGCAGTGTTGTTGGAAGTGCTTCTCTGCGTAGACAATCTCAAATTCTCTACAAATATCCATCACTCAAAGTTGTTAACTTCAGAGGAAATGTTCAAACACGATTGAGGAAACTCAAAGAAGGAGATGTCCATGCTACATTGTTGGCTCTAGCTGGACTAAAACGCTTAAACATGGCAGAAACTGCGACATCTGTATTGTCAGTGGACGAAATGCTTCCAGCAGTTGCT CAAGGTGCTATTGGAATAGCTTGCAGAAGCAGTGATGACACAATGATGAATTACTTGTCCTCATTGAACCATGAAGATACCAGATTAGCTGTTGCATGTGAAAGAGAATTCTTGTCAGTTCTTGATGGCAACTGCCGAACTCCAATTGCGGCATATGCTTCTCGTGACAAGGATGGGAATTGTTCATTCCGAGGGCTATTGGC TTCACCTGATGGATCTACAGTATATGAGACTTCGAGAACTGGACCTTATGATTTCGATATCATGGTTGAGATGGGTAAAGATGCTGGCCACGAGCTGAAAGCAAAGGCTGGCCCTGGCTTCTTTGATAGCTTGCAATGAAAATAGAAATCCACCATTGGCCAACTAGAGTGTTGAGTGGATTATTTTGATTTTTTTTTGTACCCTAGTTCTACTAGAGGATTGTACCACAATGTTGAGCTGTCTCATTCAGATCTGTATCTTTGCTTCTTTTAGCAAGGTGAGCTAGAATTTAGAACGTGGTTCCACGGTTATTGTAATCCCTTGTATTTCCAATGAATTCTGGAAGAGGCTTTTGCGGCCAATTATGTTGTAACTTTGTAATTTGATGTAATTTTGCAGATGCTTTGTTTTCAAAATAA ]
[+] EMBL CB653328 [ CCTCCCCCTCCCTCTCGCTCGCATCTTCCCCGGAGATGCCGCCGCCGCCGAGATGCGCCGCCACCACCGCCCACCACTCCCTCCTCGGCTCGCCCACCTGCCTCGCGCGCCCGCGGCGGCGGTGCTGCCCCGTGCGCGCCGCCGTCGCCGTCCAGGCCGAGGCGCAGGCCAAGGTCTCGCTCATCCGGATTGGCACCCGCGGGAGGACAGTCCTCTTGCACTGGCACAAGCTCATGAAACCCGAGACAAGCTGAAGGCTGCACACTCAGAGTTAGCCGAGGAGGGGGCCGTTGAGATTGTCATCATTAAGACCACAGGAGACATGATCTTGGACAAACCCCTGGCAGATATAGGTGGCAAGGGTTTATTCACCAAGGAGATCGATGATGCACTTTTGCAGGGAAGGATTGACATTGCCGTCCACTCGATGAAAGATGTTCCAACATATTTACCAGAAGGCACGATATTGCCTTGTAATCTCCCACGGGAAGATGTGAGAGATGCATTCATATGCTTGACTGCAAGTTCCCTTGCGGAGCTTCCTGCTGGCAGTGTTGTTGGAAGTGCTTCTCTGCGTAGACAATCTCAAATTCTCTACAAATATCCATCACTCAAAGTTGTTAACTTCAGAGGAAATGTTCAAACACGATTGAGGAAACTCAAAGAAGGAGATGTCCATGCTACATTGTTGGCTCTAGCTGGACTAAAACGCTTAAACATGGCAGACACTGCGACATCTGTATTGTCAGTGGACGAAATGCTTCCAGCAGTTGCT CCAGGTGCTATTGGAATAGCTTGCAGAAGCAGTGATGACACAAT ]
[+] EMBL CB679863 [ CCTCCCCCTCCCTCTCGCTCGCATCTTCCCCGGAGATGCCGCCGCCGCCGAGATGCGCCGCCACCACCGCCCACCACTCCCTCCTCGGCTCGCCCACCTGCCTCGCGCGCCCGCGGCGGCGGTGCTGCCCCGTGCGCGCCGCCGTCGCCGTCCAGGCCGAGGCGCAGGCCAAGGTCTCGCTCATCCGGATTGGCACCCGCGGG AGTCCTCTTGCACTGGCACAAGCTCATGAAACCCGAGACAAGCTGAAGGCTGCACACTCAGAGTTAGCCGAGGAGGGGGCCGTTGAGATTGTCATCATTAAGACCACAGGAGACATGATCTTGGACAAACCCCTGGCAGATATAGGTGGCAAGGGTTTATTCACCAAGGAGATCGATGATGCACTTTTGCAGGGAAGGATTGACATTGCCGTCCACTCGATGAAAGATGTTCCAACATATTTACCAGAAGGCACGATATTGCCTTGTAATCTCCCACGGGAAGATGTGAGAGATGCATTCATATGCTTGACTGCAAGTTCCCTTGCGGAGCTTCCTGCTGGCAGTGTTGTTGGAAGTGCTTCTCTGCGTAGACAATCTCAAATTCTCTACAAATATCCATCACTCAAAGTTGTTAACTTCAGAGGAAATGTTCAAACACGATTGAGGAAACTCAAAGAAGGAGATGTCCATGCTACATTGTTGGCTCTAGCTGGACTAAAACGCTTAAACATGGCAGAAACTGCGACATCTGTATTGTCAGTGGACGAAATGCTTCCAGCAGTTGCTACAA GTGCTATTG ]
[+] EMBL CB618800 [ CCCCCTCCCTCTCGCTCGCATCTTCCCCGGAGATGCCGCCGCCGCCGAGATGCGCCGCCACCACCGCCCACCACTCCCTCCTCGGCTCGCCCACCTGCTTCGCGCGCCCGCGGCGGCGGTGCTGCCCCGTGCGCGCCGCCGTCGCCGTCCAGGCCGAGGCGCAGGCCAAGGTCTCGCTCATCCGGATTGGCACCCGCGGG AGTCCTCTTGCACTGGCACAAGCTCATGAAACCCGAGACAAGCTGAAGGCTGCACACTCAGAGTTAGCCGAGGAGGGGGCCGTTGAGATTGTCATCATTAAGACCACAGGAGACATGATCTTGGACAAACCCCTGGCAGATATAGGTGGCAAGGGTTTATTCACCAAGGAGATCGATGATGCACTTTTGCAGGGAAGGATTGACATTGCCGTCCACTCGATGAAAGATGTTCCAACATATTTACCAGAAGGCACGATATTGCCTTGTAATCTCCCACGGGAAGATGTGAGAGATGCATTCATATGCTTGACTGCAAGTTCCCTTGCGGAGCTTCCTGCTGGCAGTGTTGTTGGAAGTGCTTCTCTGCGTAGACAATCTCAAATTCTCTACAAATATCCATCACTCAAAGTTGTTAACTTCAGAGGAAATGTTCAAACACGATTGAGGAAACTCAAAGAAGGAGATGTCCATGCTACATTGTTGGCTCTAGCTGGACTAAAACGCTTAAACATGGCAGAAACTGCGACATCTGTATTGTCAGTGGACGAAATGCTTCCAGCAGTTGCT CAAGGTGCTATTGG ]
[+] EMBL CB647060 [ CCGCCGCCGCCGAGATGCGCCGCCACCACCGCCCACCACTCCCTCCTCGGCTCGCCCACCTGCCTCGCGCGCCCGCGGCGGCGGTGCTGCCCCGTGCGCGCCGCCGTCGCCGTCCAGGCCGAGGCGCAGGCCAAGGTCTCGCTCATCCGGATTGGCACCCGCGGG AGTCCTCTTGCACTGGCACAAGCTCATGAAACCCGAGACAAGCTGAAGGCTGCACACTCAGAGTTAGCCGAGGAGGGGGCCGTTGAGATTGTCATCATTAAGACCACAGGAGACATGATCTTGGACAAACCCCTGGCAGATATAGGTGGCAAGGGTTTATTCACCAAGGAGATCGATGATGCACTTTTGCAGGGAAGGATTGACATTGCCGTCCACTCGATGAAAGATGTTCCAACATATTTACCAGAAGGCACGATATTGCCTTGTAATCTCCCACGGGAAGATGTGAGAGATGCATTCATATGCTTGACTGCAAGTTCCCTTGCGGAGCTTCCTGCTGGCAGTGTTGTTGGAAGTGCTTCTCTGCGTAGACAATCTCAAATTCTCTACAAATATCCATCACTCAAAGTTGTTAACTTCAGAGGAAATGTTCAAACACGATTGAGGAAACTCAAAGAAGGAGATGTCCATGCTACATTGTTGGCTCTAGCTGGACTAAAACGCTTAAACATGGCAGAAACTGCGACATCTGTATTGTCAGTGGACGAAATGCTTCCAGCAGTTGCT CAAGGTGCTATTGG ]
[-] EMBL CB618801 [ GCTACATTGTTGGCTCTAGGTGGACTAAAACGCTTAAACATGGCAGAAACTGCGACATCTGTATTGTCAGTGGACGAAATGCTTCCAGCAGTTGCT CAAGGTGCTATTGGAATAGCTTGCAGAAGCAGTGATGACACAATGATGAATTACTTGTCCTCATTGAACCATGAAGATACCAGATTAGCTGTTGCATGTGAAAGAGAATTCTTGTCAGTTCTTGATGGCAACTGCCGAACTCCAATTGCGGCATATGCTTCTCGTGACAAGGATGGGAATTGTTCATTCCGAGGGCTATTGGC TTCACCTGATGGATCTACAGTATATGAGACTTCGAGAACTGGACCTTATGATTTCGATATCATGGTTGAGATGGGTAAAGATGCTGGCCACGAGCTGAAAGCAAAGGCTGGCCCTGGCTTCTTTGATAGCTTGCAATGAAAATAGAAATCCACCATTGGCCAACTAGAGTGTTGAGTGGATTATTTTGATTTTTTTTTGTACCCTAGTTCTACTAGAGGATTGTACCACAATGTTGAGCTGTCTCATTCAGATCTGTATCTTTGCTTCTTTTAGCAAGGTGAGCTAGAATTTAGAACGTGGTTCCACGGTTATTGTAATCCCTTGTATTTCCAATGAATTCTGGAAGAGGCTTTTGCGGCCAATTATGTTGTAACTTTGTAAAGGGATGTAATTTTGCAGATGCTTTGTTTTCAAAAAAAAAAAGGG]
[+] EMBL CA765466 [ agggggGATGACACANGGNTGAATTACTTGTCCTCATTGAACCNTGAAGATACCAGATTAGCTGTTGCATGTGAAAGAGAATTCTTGTCAGTTCTTGATGGCAACTGCCGAACTCCAATTGCGGCATATGCTTCTCGTGACAAGGATGGGAATTGTTCATTCCGAGGGCTATTGGC TTCACCTGATGGATCTACAGTATATGAGACTTCGAGAACTGGACCTTATGATTTCGATATCATGGTTGAGATGGGTAAAGATGCTGGCCACGAGCTGAAAGCAAAGGCTGGCCCTGGCTTCTTTGATAGCTTGCAATGAAAATAGAAATCCACCATTGGCCAACTAGAGTGTTGAGTGGATTATTTTGATTTTTTTTTGTACCCTAGTTCTACTAGAGGATTGTACCACAATGTTGAGCTGTCTCATTCAGATCTGTATCTTTGCTTCTTTTAGCAAGGNGAGCTAGAATTTANAACGTGGTTCCACGGGTATTGNNATCCCTTGNATTTCCAATGAATTCTGGAAGAGGCTTTTGCGGCCAATTATGGTGTAACTTTGTAATTTGAT ]
[+] EMBL BI806230 [ TACCTGTTGCATGTG AAGAGAATTC TG CAGTTCTTGATGCCAACT CCGAACTCC ATT CGGCATATGCTTCTCGTGACAAGGATGGGAATTGTTCATTCCGAGGGCTATTGGCTTTCACCTGATGGATCTACAGTATATGAGACTTCGAGAACTGGACCTTATGATTTCGATATCATGGTTGAGATGGGTAAAGATGCTGGCCACGAGCTGAAAGC AAGGCTGG CCTGGCTTCTTTGATAGCTTGCAATGAAAATAGAAATCCACC TTGGCCAACTAGAGTGTTGAGTGGATTATTTTGATTTTTTTTTGTACCCTAGTTCTACTAGAGGATTGTACCAC ATGTTGAGCTGTCTCATTCAGATCTGTATCTTTGCTTCTTTTAGCAAGGTGAGCTAGAATTTAGAACGTGGTTCCACGGTTATTGTAATCCCTTGTATTTCC ATGAATTCTGGAAGAGGCTTTT C GCC ATTATG TGTAACTTTGTAATTTGATGTAAaa ]
[-] EMBL CB683496 [ TTGCATGTGAAAGAGAATTCTTGTCAGTTCTTGATGGCAACTGCCGAACTCCAATTGCGGCATATGCTTCTCGTGACAAGGATGGGAATTGTTCATTCCGAGGGCTATTGGC TTCACCTGATGGATCTACAGTATATGAGACTTCGAGAACTGGACCTTATGATTTCGATATCATGGTTGAGATGGGTAAAGATGCTGGCCACGAGTTGAAAGCAAAGGCTGGCCTTGGCTTTTTTGATAGCTTGCAATGAAAATAGAAATCCACCATTGGCCAACTAGAGTGTTGAGTGGATTATTTTGATTTTTTTTGGTCCCCTAGTTCTACTAGAGGATTGTACCACAATGTTGAGCTGTCTCATTCAGATCTGTATCTTTGCTTCTTTTAGCAAGGTGA ]
consensusID : consensus_14294#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 518 fasta sequence
[GCATGTGAAAGAGAATTTTTGTCAGTTCTTCATGGCAAGTGCGGAACTCCAATTGCGGCATATGATTTTAGTGACAAGGATGGGAATCGTTCATTCGGAGGGCTATGGGCTTCTCCTGATGGATCTACAGTATATGAGAATTGGAGAAATGGACCTTAAGATTTTGATATCATGGTTGAGAAGGGTAAAGACGTTGGCCACGAGCTGAAAGCAAAGGCTGGCCCTGGATTTTTTGATAGCTTGCAATGAAAATAGAAATCCACCATTGGCCAAATAGATTGTTGAGTGGATTATTTTGATTTTTTTTTGTACCCTAGTTATACTAGAGGATTGTACCACAATGTTGAGGTGTATCATTCAGATATGTATTTTGGATTCTTTTAGCAAGGCGAGCTAGAATTTAGAAGGTGGTTCCACGGTTATTGTAATCCCTTGTATTTCCAATGAATTGTGGAAGAGGCTTTTGCGGCCAATTATGTTGTAACTTGGTACATTAGACTGTAATTTTGCAGACGCTT]
[-] EMBL CB618802 [GCATGTGAAAGAGAATTTTTGTCAGTTCTTCATGGCAAGTGCGGAACTCCAATTGCGGCATATGATTTTAGTGACAAGGATGGGAATCGTTCATTCGGAGGGCTATGGGCTTCTCCTGATGGATCTACAGTATATGAGAATTGGAGAAATGGACCTTAAGATTTTGATATCATGGTTGAGAAGGGTAAAGACGTTGGCCACGAGCTGAAAGCAAAGGCTGGCCCTGGATTTTTTGATAGCTTGCAATGAAAATAGAAATCCACCATTGGCCAAATAGATTGTTGAGTGGATTATTTTGATTTTTTTTTGTACCCTAGTTATACTAGAGGATTGTACCACAATGTTGAGGTGTATCATTCAGATATGTATTTTGGATTCTTTTAGCAAGGCGAGCTAGAATTTAGAAGGTGGTTCCACGGTTATTGTAATCCCTTGTATTTCCAATGAATTGTGGAAGAGGCTTTTGCGGCCAATTATGTTGTAACTTGGTACATTAGACTGTAATTTTGCAGACGCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14294#1 GTCTCCTCCCCCTCCCTCTCGCTCGCATCTTCCCCGGAGATGCCGCCGCCGCCGAG---- 56
consensus_14294#2 ------------------------------------------------------------
consensus_14294#0 -CTTTTTTTTTCTGATTTTAACTTGGATCTCGTGTAAATTTTGCATCCACATTAAACTCT 59
consensus_14294#1 -ATGCG----CCGCCACCACCGCCC--ACCACTCCCTCCTCGGC-TCGCCC----ACCTG 104
consensus_14294#2 ------------------------------------------------------------
consensus_14294#0 TATGAGGAATTCACAAGAATTGTTATGGTTGCTCTCTTTTCAATATTGACTTGAAAGTGA 119
consensus_14294#1 CCTCGCGCGCCCGCGGCGGCGG------TGCTGCCCCGTGCGCGCCGCCGTCGCCGTCCA 158
consensus_14294#2 ------------------------------------------------------------
consensus_14294#0 CTTTATGGTTGCGAAAAAGGGACTTTCTTTCTTTTCTTTGTTTTTAACAATTTTTTCTTG 179
consensus_14294#1 -GGCCGAGGCGCAGGCCAAGGTCTCGC-------TCATCCGGATTGGCACCCGC----GG 206
consensus_14294#2 ------------------------------------------------------------
consensus_14294#0 TGATAGAGTAGCTTATTTGAGATATGCAAGTATGTAATTCAAATTATTGGCTGTATAGGA 239
consensus_14294#1 GAGTCCTCTTGCACTGGCACAAGCTCATGAAACCCGAGACAAGCTGAAGGCTGCACACTC 266
consensus_14294#2 ------------------------------------------------------------
consensus_14294#0 CAGTCCTCTTGCACTGGCACAAGCTCATGAAACCCGAGACAAGCTGAAGGCTGCACACTC 299
consensus_14294#1 AGAGTTAGCCGAGGAGGGGGCCGTTGAGATTGTCATCATTAAGACCACAGGAGACATGAT 326
consensus_14294#2 ------------------------------------------------------------
consensus_14294#0 AGAGTTAGCCGAGGAGGGGGCCGTTGAGATTGTCATCATTAAGACCACAGGAGACATGAT 359
consensus_14294#1 CTTGGACAAACCCCTGGCAGATATAGGTGGCAAGGGTTTATTCACCAAGGAGATCGATGA 386
consensus_14294#2 ------------------------------------------------------------
consensus_14294#0 CTTGGACAAACCCCTGGCAGATATAGGTGGCAAGGGTTTATTCACCAAGGAGATCGATGA 419
consensus_14294#1 TGCACTTTTGCAGGGAAGGATTGACATTGCCGTCCACTCGATGAAAGATGTTCCAACATA 446
consensus_14294#2 ------------------------------------------------------------
consensus_14294#0 TGCACTTTTGCAGGGAAGGATTGACATTGCCGTCCACTCGATGAAAGATGTTCCAACATA 479
consensus_14294#1 TTTACCAGAAGGCACGATATTGCCTTGTAATCTCCCACGGGAAGATGTGAGAGATGCATT 506
consensus_14294#2 ------------------------------------------------------------
consensus_14294#0 TTTACCAGAAGGCACGATATTGCCTTGTAATCTCCCACGGGAAGATGTGAGAGATGCATT 539
consensus_14294#1 CATATGCTTGACTGCAAGTTCCCTTGCGGAGCTTCCTGCTGGCAGTGTTGTTGGAAGTGC 566
consensus_14294#2 ------------------------------------------------------------
consensus_14294#0 CATATGCTTGACTGCAAGTTCCCTTGCGGAGCTTCCTGCTGGCAGTGTTGTTGGAAGTGC 599
consensus_14294#1 TTCTCTGCGTAGACAATCTCAAATTCTCTACAAATATCCATCACTCAAAGTTGTTAACTT 626
consensus_14294#2 ------------------------------------------------------------
consensus_14294#0 TTCTCTGCGTAGACAATCTCAAATTCTCTACAAATATCCATCACTCAAAGTTGTTAACTT 659
consensus_14294#1 CAGAGGAAATGTTCAAACACGATTGAGGAAACTCAAAGAAGGAGATGTCCATGCTACATT 686
consensus_14294#2 ------------------------------------------------------------
consensus_14294#0 CAGAGGAAATGTTCAAACACGATTGAGGAAACTCAAAGAAGGAGATGTCCATGCTACATT 719
consensus_14294#1 GTTGGCTCTAGCTGGACTAAAACGCTTAAACATGGCAGAAACTGCGACATCTGTATTGTC 746
consensus_14294#2 ------------------------------------------------------------
consensus_14294#0 GTTGGCTCTAGCTGGACTAAAACGCTTAAACATGGCAGAAACTGCGACATCTGTATTGTC 779
consensus_14294#1 AGTGGACGAAATGCTTCCAGCAGTTGCTCAAGGTGCTATTGGAATAGCTTGCAGAAGCAG 806
consensus_14294#2 ------------------------------------------------------------
consensus_14294#0 AGTGGACGAAATGCTTCCAGCAGTTGCTCAAGGTGCTATTGGAATAGCTTGCAGAAGCAG 839
consensus_14294#1 TGATGACACAATGATGAATTACTTGTCCTCATTGAACCATGAAGATACCAGATTAGCTGT 866
consensus_14294#2 ------------------------------------------------------------
consensus_14294#0 TGATGACACAATGATGAATTACTTGTCCTCATTGAACCATGAAGATACCAGATTAGCTGT 899
consensus_14294#1 TGCATGTGAAAGAGAATTCTTGTCAGTTCTTGATGGCAACTGCCGAACTCCAATTGCGGC 926
consensus_14294#2 -GCATGTGAAAGAGAATTTTTGTCAGTTCTTCATGGCAAGTGCGGAACTCCAATTGCGGC 59
consensus_14294#0 TGCATGTGAAAGAGAATTCTTGTCAGTTCTTGATGGCAACTGCCGAACTCCAATTGCGGC 959
***************** ************ ******* *** ****************
consensus_14294#1 ATATGCTTCTCGTGACAAGGATGGGAATTGTTCATTCCGAGGGCTATTGGCTTCACCTGA 986
consensus_14294#2 ATATGATTTTAGTGACAAGGATGGGAATCGTTCATTCGGAGGGCTATGGGCTTCTCCTGA 119
consensus_14294#0 ATATGCTTCTCGTGACAAGGATGGGAATTGTTCATTCCGAGGGCTATTGGCTTCACCTGA 1019
***** ** * ***************** ******** ********* ****** *****
consensus_14294#1 TGGATCTACAGTATATGAGACTTCGAGAACTGGACCTTATGATTTCGATATCATGGTTGA 1046
consensus_14294#2 TGGATCTACAGTATATGAGAATTGGAGAAATGGACCTTAAGATTTTGATATCATGGTTGA 179
consensus_14294#0 TGGATCTACAGTATATGAGACTTCGAGAACTGGACCTTATGATTTCGATATCATGGTTGA 1079
******************** ** ***** ********* ***** **************
consensus_14294#1 GATGGGTAAAGATGCTGGCCACGAGCTGAAAGCAAAGGCTGGCCCTGGCTTCTTTGATAG 1106
consensus_14294#2 GAAGGGTAAAGACGTTGGCCACGAGCTGAAAGCAAAGGCTGGCCCTGGATTTTTTGATAG 239
consensus_14294#0 GATGGGTAAAGATGCTGGCCACGAGCTGAAAGCAAAGGCTGGCCCTGGCTTCTTTGATAG 1139
** ********* * ********************************* ** ********
consensus_14294#1 CTTGCAATGAAAATAGAAATCCACCATTGGCCAACTAGAGTGTTGAGTGGATTATTTTGA 1166
consensus_14294#2 CTTGCAATGAAAATAGAAATCCACCATTGGCCAAATAGATTGTTGAGTGGATTATTTTGA 299
consensus_14294#0 CTTGCAATGAAAATAGAAATCCACCATTGGCCAACTAGAGTGTTGAGTGGATTATTTTGA 1199
********************************** **** ********************
consensus_14294#1 TTTTTTTTTGTACCCTAGTTCTACTAGAGGATTGTACCACAATGTTGAGCTGTCTCATTC 1226
consensus_14294#2 TTTTTTTTTGTACCCTAGTTATACTAGAGGATTGTACCACAATGTTGAGGTGTATCATTC 359
consensus_14294#0 TTTTTTTTTGTACCCTAGTTCTACTAGAGGATTGTACCACAATGTTGAGCTGTCTCATTC 1259
******************** **************************** *** ******
consensus_14294#1 AGATCTGTATCTTTGCTTCTTTTAGCAAGGTGAGCTAGAATTTAGAACGTGGTTCCACGG 1286
consensus_14294#2 AGATATGTATTTTGGATTCTTTTAGCAAGGCGAGCTAGAATTTAGAAGGTGGTTCCACGG 419
consensus_14294#0 AGATCTGTATCTTTGCTTCTTTTAGCAAGGTGAGCTAGAATTTAGAACGTGGTTCCACGG 1319
**** ***** ** * ************** **************** ************
consensus_14294#1 TTATTGTAATCCCTTGTATTTCCAATGAATTCTGGAAGAGGCTTTTGCGGCCAATTATGT 1346
consensus_14294#2 TTATTGTAATCCCTTGTATTTCCAATGAATTGTGGAAGAGGCTTTTGCGGCCAATTATGT 479
consensus_14294#0 TTATTGTAATCCCTTGTATTTCCAATGAATTCTGGAAGAGGCTTTTGCGGCCAATTATGT 1379
******************************* ****************************
consensus_14294#1 TGTAACTTTGTA-ATTTGA-TGTAATTTTGCAGATGCTTTGTTTTCAAAATAAAAAAGGG 1404
consensus_14294#2 TGTAACTTGGTACATTAGACTGTAATTTTGCAGACGCTT--------------------- 518
consensus_14294#0 TGTAACTTTGTA-ATTTGA-TGTAATTTTGCAGATGCTTTGTTTTCAAAATAATTTGATT 1437
******** *** *** ** ************** ****
consensus_14294#1 ------------------------------
consensus_14294#2 ------------------------------
consensus_14294#0 CTGAAATTGTAAAAAAAAAAAAAACTAAAA 1467
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||