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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14299#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 2169 fasta sequence
[GGTGCTCGCCGTGTCCGTGGCGTGGCAGGGCTCCACCATGGCCGCCGACTACTGGCTCGCCTACCAGACCTCCGGCGACGCGTTCCGGCCCGCCCTCTTCATCAAGGTGTACGCCATCATCGCCGCCGTGTCCGTGGTGATCGTCACGGTGAGGTCCCTCCTCGTCGCCACCATCGGCCTCGACACCGCCAACATCTTCTTCAGGCAGGTCCTCAGCACCATCCTCCACGCCCCCATGTCCTTCTTCGACACCACCCCCTCCGGCAGGATCCTCACCAGGGCGTCATCGGACCAGACGAACGTGGATCTGTTGTTGCCGTTCTTCGTGTGGATGAGCGTTTCCATGTACATCACGGTGATAGGCGTGGTGATCATGACGTGTCAGGTGGCCTGGCCTTCGGTCGTCCTCGTCGTACCCTTGCTCATGCTCAACCTCTGGTTCCGGAAATACTACATCTCGACGTCGAGGGAGCTGACCAGGCTGGAGTCGATCACCAAGGCTCCCGTGATCCACCACTTCTCGGAGACGGTGCAGGGCGTCATGGTGATCAGGTGCTTCCAGAAGCAGGACAACTTCTTCCACGAGAACCTCAGCCGCCTCAACGCCAGCCTCAAGATGGACTTCCACAACAATGCAGCCAACGAGTGGCTCGGCCTGCGGCTGGAGCTCATCGGAAGCCTTGTCCTCTGCGTCACCGCCTTGCTCATGGTCACGTTGCCGTCCAACATCGTCCTTCCAGAGTATGTCGGTTTGTCGCTCTCGTATGGCCTGTCACTTAACTCGGTGATGTTCTGGGCCATTTGGTTGAGTTGCAATATTGAAAACAAAATGGTCTCAGTTG-AGAGGATAAAGC-AGTTCACGAACATCCCATCTGAGGCAGAATGGAGGATCAAGGAGACTGCTCCCTCTGCAAACTGGCCACACAAAGGCGACATCGATATCATTGATCTCAAGTTTCGGTACAGGCACAACACTCCCCTAGTGCTGAAGGGCATCACGCTAAGCATACACGGAGGGGAGAAGATTGGTGTGGTTGGGAGAACTGGCAGTGGGAAATCGACGCTGATCCAGGCATTGTTCAGAATAGTTGAGCCTTCTGAGGGGAAGATAATCATCGACGGCATCGACATCTGCACGCTAGGGCTCCATGATCTGAGGTCTCGGNTCGGCATTATCCCTCAGGAGCCTGTCCTCTTCGAAGGGACGATTCGAAGCAACATCGACCCGCTTCAGCTGTACTCTGATGATGAAATTTGGCAGGCCTTGGAACGTTGTCAGCTGAAAGATGCAGTGACTTCAAAACCCGAGAAGCTTGATGCATCAGTTGTCGACAACGGCGAGAACTGGAGTGTTGGGCAGAGGCAGTTGCTGTGCCTTGGCCGAGTGATGCTGAAGCACAGCAGGATACTGTTCATGGACGAGGCCACTGCTTCAGTGGATTCCCGAACCGATGCCGTGATTCAGAAGATCATCCGGGAAGAGTTCTCAGCCTGCACCATCATCAGCATCGCGCACAGGATACCGACGGTCATGGACTGCGACAGAGTCCTGGTCATCGATGCCGGCCTAGCGAAGGAA-TTTGACAGTCCTGCAAACCTGATCGAAAGGCCATCACTGTTTGGAGCATTGGTTCAAGAGTACGCAACCCGGTCATCCGATATATAACTAATGATGAGATGAGCTGATTTTTGACTCAGAATTTGGGAGGAAATAAGGGCGACGGATGGCCACCCAAGCTGATCTAGTGCTCTCTCCACACTGTGAGATGCTTTTCAATTTTTATGAGCAGTGAGCCTGTGAGTAGTAAGTAGCGTGAGAAGGCACCAGGAAAAGAAATACG-AAAAAAAAAACGCAGGTTTCGGTGTATTGTTTAGCACGTGTTCAGCGCGTGCACTGTGAAAGCTATGATGCTTTGTGTAACAACGATGAGATGAAGTTAATTCAATTAATATATTGTTACCGTGGAAAATTTTCAGTCAA---AATTAAAGGAGACTTCATAAATCCCTAGACCGTGTTGGAGAAAAAAAAATCCCTAGACCGATGCATAAATAATCATAAGGTTTAGGCTTGTAACTTGTTAGTCTTGAATATATATGTCCACCCAAACCATATTGATAAATCTATTGAAGATTTGAAGGCGAGTTATTTGCAAGGTAAAAAAAAAAAGA]
[+] EMBL CB639331 [GGTGCTCGCCGTGTCCGTGGCGTGGCAGGGCTCCACCATGGCCGCCGACTACTGGCTCGCCTACCAGACCTCCGGCGACGCGTTCCGGCCCGCCCTCTTCATCAAGGTGTACGCCATCATCGCCGCCGTGTCCGTGGTGATCGTCACGGTGAGGTCCCTCCTCGTCGCCACCATCGGCCTCGACACCGCCAACATCTTCTTCAGGCAGGTCCTCAGCACCATCCTCCACGCCCCCATGTCCTTCTTCGACACCACCCCCTCCGGCAGGATCCTCACCAGGGCGTCATCGGACCAGACGAACGTGGATCTGTTGTTGCCGTTCTTCGTGTGGATGAGCGTTTCCATGTACATCACGGTGATAGGCGTGGTGATCATGACGTGTCAGGTGGCCTGGCCTTCGGTCGTCCTCGTCGTACCCTTGCTCATGCTCAACCTCTGGTTCCGGAAATACTACATCTCGACGTCGAGGGAGCTGACCAGGCTGGAGTCGATCACCAAGGCTCCCGTGATCCACCACTTCTCGGAGACGGTGCAGGGCGT ]
[+] EMBL CB641161 [ GGCCGCCAACTACTGGCTGGCCTACCAGACCTCCTGAGACGCGTTACGGCCCGCCCTCTTCATCAAGGTGAACACCATTATCGCCGCCATGTCCGTGGTGATCGTCACGGTGAGGTGGGTGCTCGTCGCCACCATAGGCCTTGACACCGCCAACATCTTCTTCAGGCAGGTCCTCAGCACCATCCTCCACGCCCCCATGTCCTTCTTCGACACCACCCCCTCCGGCAGGATCCTCACCAGGGCGTCATCGGACCAGACGAACGTGGATCTGTTGTTGCCGTTCTTCGTGTGGATGAGCGTTTCCATGTACATCACGGTGATAGGCGTGGTGATCATGACGTGTCAGGTGGCCTGGCCTTCAGTCGTCCTCGTCGTACCCTTGCTCATGCTCAACCTCTGGTTCCGGAAATACTACATCTCGACGTCGAGGGAGCTGACCAGGCTGGAGTCGATCACCAAGGCTC ]
[+] EMBL CB656063 [ CGGACCAGACGAACGTGGATCTGTTGTTGCCGTTCTTCGTGTGGATGAGCGTTTCCATGTACATCACGGTGATAGGCGTGGTGATCATGACGTGTCAGGTGGCCTGGCCTTCGGTCGTCCTCGTCGTACCCTTGCTCATGCTCAACCTCTGGTTCCGGAAATACTACATCTCGACGTCGAGGGAGCTGACCAGGCTGGAGTCGATCACCAAGGCTCCCGTGATCCACCACTTCTCGGAGACGGTGCAGGGCGTCATGGTGATCAGGTGCTTCCAGAAGCAGGACAACTTCTTCCACGAGAACCTCAGCCGCCTCAACGCCAGCCTCAAGATGGACTTCCACAACAATGCAGCCAACGAGTGGCTCGGCCTGCGGCTGGAGCTCATCGGAAGCCTTGTCCTCTGCGTCACCGCCTTGCTCATGGTCACGTTGCCGTCCAACATCGTCCTTCCAGAGTATGTCGGTTTGTCGCTCTCGTATGGCCTGTCACTTAACTCGGTGATGTTCTGGGCCATTTGGTTGAGTTGCAATATTGAAAACAAAATGGTCTCAGTTG AGAGGATAAAGC AGTTCACGAACATCCCATCTGAGGCAGAATGGAGGATCAAGGAGACTGCTCCCTCTGCAAACTGGCCACACAAAGGCGACATCGATATCATTGATCTCAAGTTTCGGTACAGGCACAACACTCCCCTAGTGCTGAAGGGCATCACGCTAAGCATACACGGAGGGGAGAAGATTGGTGTGGTTGGGAGAACTGGCAGTGGGAAATCGACGCTGATCCAGGCATTGTTCAGAATAGT ]
[+] EMBL CB679504 [ CCCTTGCTCATGCTCAACCTCTGGTTCCGGAAATACTACATCTCGACGTCGAGGGAGCTGACCAGGCTGGAGTCGATCACCAAGGCTCCCGTGATCCACCACTTCTCGGAGACGGTGCAGGGCGTCATGGTGATCAGGTGCTTCCAGAAGCAGGACAACTTCTTCCACGAGAACCTCAGCCGCCTCAACGCCAGCCTCAAGATGGACTTCCACAACAATGCAGCCAACGAGTGGCTCGGCCTGCGGCTGGAGCTCATCGGAAGCCTTGTCCTCTGCGTCACCGCCTTGCTCATGGTCACGTTGCCGTCCAACATCGTCCTTCCAGAGTATGTCGGTTTGTCGCTCTCGTATGGCCTGTCACTTAACTCGGTGATGTTCTGGGCCATTTGGTTGAGTTGCAATATTGAAAACAAAATGGTCTCAGTTG AGAGGATAAAGC AGTTCACGAACATCCCATCTGAGGCAGAATGGAGGATCAAGGAGACTGCTCCCTCTGCAAACTGGCCACACAAAGGCGACATCGATATCATTGATCTCAAGTTTCGGTACAGGCACAACACTCCCCTAGTGCTGAAGGGCATCACGCTAAGCATACACGGAGGGGAGAAGATTGGTGTGGTTGGGAGAACTGGCAGTGGGAAATCGACGCTGATCCAGGCATTGTTCAGAATAGTTGAGCCTTCTGAGGGGAAGATAATCATCGACGGCATCGACATCTGCACGCTAGGGCTCCATGATCTGAGGTCTCGGNTCG ]
[+] EMBL OSS4649A [ GCTGACCAGGCTGGAGTCGATCACCAAGGCTCCCGTGATCCACCACTTCTCGGAGACGGTGCAGGGCGTCATGGTGATCAGGTGCTTCCAGAAGCAGGACAACTTCTTCCACGAGAACCTCAGCCGCCTCAACGCCAGCCTCAAGATGGACTTCCACAACAATGCAGCCAACGAGTGGCTCGGCCTGCGGCTGGAGCTCATCGGAAGCCTTGTCCTCTGCGTCACCGCCTTGCTCATGGTCACGTTGCCGTCCAACATCGTCCTTCCAGAGTATGTCGGTTTGTCGCTCTCGTATGGCCTGTCACTTAACTCGGTGATGTTCTGGGGCATTTGGTTGAGTTGCAATATTGAAAACAAAATGGTCTCAGTTGAAGAGGATAAAGCAAGTTCACGGANATCCCATCTGAG ]
[+] EMBL CA753997 [ TTTCGGTACAGGCACAACACTCCCCTAGTGCTGAAGGGCATCACGCTAAGCATACTCGGAGGGGAGAAGATTGGTGTGGTTGGGAGAACTGGCAGTGGGAAATCGACGCTGATCCAGGCATTGTTCAGAATAGTTGAGCCTTCTGAGGGGAAGATAATCATCGACGGCATCGACATCTGCACGCTAGGGCTCCATGATCTGAGGTCTCGGTTCGGCATTATCCCTCAGGAGCCTGTCCTCTTCGAAGGGACGATTCGAAGCAACATCGACCCGCTTCAGCTGTACTCTGATGATGAAATTTGGCAGGCCTTGGAACGTTGTCAGCTGAAAGATGCAGTGACTTCAAAACCCGAGAAGCTTGATGCATCAGTTGTCAACAACGGCGAGAACTGGAGTGTTGGGCAGAGGCAGTTGCTGTGCCTTGGCCGAGTGATGCTGAAGCACAGCAGGATACTGTTCATGGACGAGGCCACTGCTTCAGTGGATTCCCAAACCGATGCCGTGATTCAGAAGATCATCCGGGAAGAGTTCTCAGCCTGCACCATCATCAGCTTCGCGCACAGGATACCGACGGGCATGGACTGCGACAGAGTCCTGGGCATCGATGCCGGCCTAACGAAGGAATTTTGA AGCCCTGCCAACCTGATCGAAAGGCCATCACTGGTT ]
[-] EMBL CB655629 [ CAGGAGCCTGTCCTCTTCGAAGGGACGATTTGAAGCAACATCGACCCGCTTCAGCTGTACTCTGATGATGAAATTTGGCAGGCCTTGGAACGTTGTCAGCTGAAAGATGCAGTGACTTCAAAACCCGAGAAGCTTGATGCATCAGTTGTCGACAACGGCGAGAACTGGAGTGTTGGGCAGAGGCAGTTGCTGTGCCTTGGCCGAGTGATGCTGAAGCACAGCAGGATACTGTTCATGGACGAGGCCACTGCTTCAGTGGATTCCCGAACCGATGCCGTGATTCAGAAGATCATCCGGGAAGAGTTTTCAGCCTGCACCATCATCAGCATCGCGCACAGGATACCGACGGTCATGGACTGCGACAGAGTCCTGGTCATCGATGCCGGCCTAGCGAAGGAA TTTGACAGTCCTGCAAACCTGATCGAAAGGCCATCACTGTTTGGAGCATTGGTTCAAGAGTACGCAACCCGGTCATCCGATATATAACTAATGATGAGATGAGCTGATTTTTGACTCAGAATTTGGGAGGAAATAAGGGCGACGGATGGCCACCCAAGCTGATCTAGTGCTCTCTCCACACTGTGAGATGCTTTTCAATTTTTATGAGCAGTGAGCCTGTGAGTAGTAAGTAGCGTGAGAAGGCACCAGGAAAAGAAATACG AAAAAAAAAACGCAGGTTTCGGTGTATTGTTTAGCACGTGTTCAGCGCGTGCACTGTGAAAGCTATGATGCTTTGTGTAACAACGATGAGATGAAGTTAATTCAATTAATATATTG ]
[-] EMBL CB633976 [ CGGAGCAACATCGACCCGCTTCAGCTGTACTCTGATGATGAAATTTGGCAGGCCTTGGAACGTTGTCAGCTGAAAGATGCAGTGACTTCAAAACCCGAGAAGCTTGATGCATCAGTTGTCGACAACGGCGAGAACTGGAGTGTTGGGCAGAGGCAGTTGCTGTGCCTTGGCCGAGTGATGCTGAAGCACAGCAGGATACTGTTCATGGACGAGGCCACTGCTTCAGTGGATTCCCAAACCGATGCCGTGATTCAGAAGATCATCCGGGAAGAGTTCTCAGCCTGCACCATCATCAGCATCGCGCACAGGATACCGACGGTCATGGACTGCGACAGAGTCCTGGTCATCGATGCCGGCCTAGCGAAGGAA TTTGACAGTCCTGCAAACCTGATCGAAAGGCCATCACTGTTTGGAGCATTGGTTCAAGAGTACGCAACCCGGTCATCCGATATATAACTAATGATGAGATGAGCTGATTTTTGACTCAGAATTTGGGAGGAAATAAGGGCGACGGATGGCCACCCAAGCTGATCTAGTGCTCTCTCCACACTGTGAGATGCTTTTCAATTTTTATGAGCAGTGAGCCTGTGAGTAGTAAGTAGCGTGAGAAGGCACCAGGAAAAGAAATACG AAAAAAAAACGCAGGTTTCGGTGTATTGTTTAGCACGTGTTCAGCGCGTGCACTGTGAAAGCTATGATGCTTTGTGTAACAACGATGAGATGAAGTTAATTCAATTAATATATTGTTACCGTGGAAAA ]
[-] EMBL CB679505 [ GAAGCAACATCGACCCGCTTCAGCTGTACTCTGATGATGAAATTTGGCAGGCCTTGGAACGTTGTCAGCTGAAAGATGCAGTGACTTCAAAACCCGAGAAGCTTGATGCATCAGTTGTCGACAACGGCGAGAACTGGAGTGTTGGGCAGAGGCAGTTGCTGTGCCTTGGCCGAGTGATGCTGAAGCACAGCAGGATACTGTTCATGGACGAGGCCACTGCTTCAGTGGATTCCCGAACCGATGCCGTGATTCAGAAGATCATCCGGGAAGAGTTCTCAGCCTGCACCATCATCAGCATCGCGCACAGGATACCGACGGTCATGGACTGCGACAGAGTCCTGGTCATCGATGCCGGCCTAGCGAAGGAA TTTGACAGTCCTGCAAACCTGATCGAAAGGCCATCACTGTTTGGAGCATTGGTTCAAGAGTACGCAACCCGGTCATCCGATATATAACTAATGATGAGATGAGCTGATTTTTGACTCAGAATTTGGGAGGAAATAAGGGCGACGGATGGCCACCCAAGCTGATCTAGTGCTCTCTCCACACTGTGAGATGCTTTTCAATTTTTATGAGCAGTGAGCCTGTGAGTAGTAAGTAGCGTGAGAAGGCACCAGGAAAAGAAATACG AAAAAAAAAACGCAGGTTTCGGTGTATTGTTTAGCACGTGTTCAGCGCGTGCACTGTGAAAGCTATGATGCTTTGTGTAACAACGATGAGATGAAGTTAATACGATTAATATATTGTTACCGTGGAAAATTTTCAGT ]
[+] EMBL CB000976 [ AGCAACATCGACCCGCTTCAGCTGTACTCTGATGATGAAATTTGGCAGGCCTTGGAACGTTGTCAGCTGAAAGATGCAGTGACTTCAAAACCCGAGAAGCTTGATGCATCAGTTGTCGACAACGGCGAGAACTGGAGTGTTGGGCAGAGGCAGTTGCTGTGCCTTGGCCGAGTGATGCTGAAGCACAGCAGGATACTGTTCATGGACGAGGCCACTGCTTCAGTGGATTCCCGAACCGATGTCTTGATTCAGAAGATCATCCGGGAAGAGTTCTCAGCCTGCACCATCATCAGCATCGCGCACAGGATACCGACGGTCATGGACTGCGACAGAGTCCTGGTCATCGATGCCGGCCTAGCGAAGGAA TTTGACAGTCCTGCAAACCTGATCGAAAGGCCATCACTGTTTGGAGCATTGGTTCAAGAGTACGCAACCCGGTCATCCGATATATAACTAATGATGAGATGAGCT ]
[-] EMBL CB633904 [ GACCCGCTTCAGCTGTACTCTGATGATGAAATTTGGCAGGCCTTGGAACGTTGTCAGCTGAAAGATGCAGTGACTTCAAAACCCGAGAAGCTTGATGCATCAGTTGTCGACAACGGCGAGAACTGGAGTGTTGGGCAGAGGCAGTTGCTGTGCCTTGGCCGAGTGATGCTGAAGCACAGCAGGATACTGTTCATGGACGAGGCCACTGCTTCAGTGGATTCCCAAACCGATGCCGTGATTCAGAAGATCATCCGGGAAGAGTTCTCAGCCTGCACCATCATCAGCATCGCGCACAGGATACCGACGGTCATGGACTGCGACAGAGTCCTGGTCATCGATGCCGGCCTAGCGAAGGAA TTTGACAGTCCTGCAAACCTGATCGAAAGGCCATCACTGTTTGGAGCATTGGTTCAAGAGTACGCAACCCGGTCATCCGATATATAACTAATGATGAGATGAGCTGATTTTTGACTCAGAATTTGGGAGGAAATAAGGGCGACGGATGGCCACCCAAGCTGATCTAGTGCTCTCTCCACACTGTGAGATGCTTTTCAATTTTTATGAGCAGTGAGCCTGTGAGTAGTAAGTAGCGTGAGAAGGCACCAGGAAAAGAAATACG AAAAAAAAACGCAGATTTCGGTGTATTGTTTAGCGAGAGTTCAGCGCGTGCACTGTGAAAGCTATGATGCTTTGTGTAACAACGATGAGATGAAGTTAATTCAAAGGATATATTGTTACCGTGGAAAATTTTCAGTCAA AATTAAAGG ]
[-] EMBL CF325919 [ TGAAGCACAGCAGGATACTGTTCATGGACGAGGCCACTGCTTCAGTGGATTCCCGAACCGATGCCGTGATTCAGAAGATCATCCGGGAAGAGTTCTCAGCCTGCACCATCATCAGCATCGCGCACAGGATACCGACGGTCATGGACTGCGACAGAGTCCTGGTCATCGATGCCGGCCTAGCGAAGGAA TTTGACAGTCCTGCAAACCTGATCGAAAGGCCATCACTGTTTGGAGCATTGGTTCAAGAGTACGCAACCCGGTCATCCGATATATAACTAATGATGAGATGAGCTGATTTTTGACTCAGAATTTGGGAGGAAATAAGGGCGACGGATGGCCACCCAAGCTGATCTAGTGCTCTCTCCACACTGTGAGATGCTTTTCAATTTTTATGAGCAGTGAGCCTGTGAGTAGTAAGTAGCGTGAGAAGGCACCAGGAAAAGAAATACG AAAAAAAAAACGCAGGTTTCGGTGTATTGTTTAGCACGTGTTCAGCGCGTGCACTGTGAAAGCTATGATGCTTTGTGTAACAACGATGAGATGAAGTTAATTCAATTAATATATTGTTACCGTGGAAAAaa ]
[-] EMBL CB656064 [ GATCATCCGGGAAGAGTTCTCAGCCTGCACCATCATCAGCATGGCGCACAGGATACCGACGGTCATGGACTGCGACAGAGTCCTGGTCATCGATGCCGGCCTAGCGAAGGAA TTTGACAGTCCTGCAAACCTGATCGAAAGGCCATCACTGTTTGGAGCATTGGTTCAAGAGTACGCAACCCGGTCATCCGATATATAACTAATGATGAGATGAGCTGATTTTTGACTCAGAATTTGGGAGGAAATAAGGGCGACGGATGGCCACCCAAGCTGATTTAGTGCTCTCTCCACACTGTGAGATGCTTTTCAATTTTTATGAGCAGTGAGCCTGTGAGTAGTAAGTAGCGTGAGAAGGCACCAGGAAAAGAAATACGAAAAAAAAAAACGCAGGTTTCGGTGTATTGTTTAGCACGTGTTCAGCGCGTGCACTGTGAAAGCTATGATGCTTTGTGTAACAACGATGAGATGAAGTTAATTCAATTAATATATTGTTACCGTGGAAAATTTTCAGTCAAGGGCAGTAA AGACTTCATAAATCCCTAGACCGTGTTGGAGAAAAAAAAATCCCTAGACCGATGCATAAATAATCATAAGGTTTAGGCTTGTAACTTGTTAGTCTTGAATATATATGTCCACCCAAACCATATTGATAAATCTATTGAAGATTTGAAGGCGAGTTATTTGCAAGGTAAAAAAAAAAAGA]
consensusID : consensus_14299#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 947 fasta sequence
[CGACCCGCTTCAGCTGTACTCTGATGATGAAATTTGGCAGGCCTTGGAACGTTGTCAGCTGAAAGATGCAGTGACTTCAAAACCCGAGAAGCTTGATGCATCAGTTGTCGACAACGGCGAGAACTGGAGTGTTGGGCAGAGGCAGTTGCTGTGCCTTGGCCGAGTGATGCTGAAGCACAGCAGGATACTGTTCATGGACGAGGCCACTGCTTCAGTGGATTCNNAAACCCCCACCACCCCCACGCCTCCGTCATGTACTGCCTGTACACCGTGAAGCTCACGTGCCCGCTCGCCCGCTCCTCCGCCTTGATCAGCCGCGACGACGCCTTCGCCGTCTTGATGTCGCCGTTCGACGACGCGCTCTCCCTCTCCTTGGGCGCGGACGACGGCTGGCGGGAGAGCGGCAGGTTGCCCGCGGGCGACGGCGAAGGACCGGGCGCGGCGCTCTCGACGAGCTCCATGGAGGACTCGTGGGCCGCGACGAGCGCGGCGAAGTCGGTGCCGGTGCGGAGGAGGTCGTGGTAGCGGCCGGACTGGGCGACGGCGCCGTCGCGCATGACGTAGATGGCGTGGGCGTTGCGGAGGAAGTCGAGCTGGTGAGTGACGAGGAGGACGGTCTTGTCCCTGAGGGCGCCGCGGACGCAGTCGCGGAAGATGTCGGAGCCGGTGTGGGCGTCGACGGCGCTAAAGACGTCGTCGAGGAGGTAGACGTCGGCGTCCTGGTAGACGGCGCGGGCGAGCTGGATGCGCTGCTTCTGCCCGCCGCTCAGGTTGATGCCGCGCTCCCCGATCTCCGTCTGGTCCCCGAACTCCATCATCTCCAGGTCCTTGTCCAGGGAGCACACCCGGATCGCCTCCCTGTACCGCTCCCGCTGCATCCCCCGCCCGAACAGGATGTTCTCCTCGATCGTCCCGTTCTGGATCCACGCCGTCTGCGCGGCACGAGG]
[-] EMBL CB633975 [CGACCCGCTTCAGCTGTACTCTGATGATGAAATTTGGCAGGCCTTGGAACGTTGTCAGCTGAAAGATGCAGTGACTTCAAAACCCGAGAAGCTTGATGCATCAGTTGTCGACAACGGCGAGAACTGGAGTGTTGGGCAGAGGCAGTTGCTGTGCCTTGGCCGAGTGATGCTGAAGCACAGCAGGATACTGTTCATGGACGAGGCCACTGCTTCAGTGGATTCNNAAACCCCCACCACCCCCACGCCTCCGTCATGTACTGCCTGTACACCGTGAAGCTCACGTGCCCGCTCGCCCGCTCCTCCGCCTTGATCAGCCGCGACGACGCCTTCGCCGTCTTGATGTCGCCGTTCGACGACGCGCTCTCCCTCTCCTTGGGCGCGGACGACGGCTGGCGGGAGAGCGGCAGGTTGCCCGCGGGCGACGGCGAAGGACCGGGCGCGGCGCTCTCGACGAGCTCCATGGAGGACTCGTGGGCCGCGACGAGCGCGGCGAAGTCGGTGCCGGTGCGGAGGAGGTCGTGGTAGCGGCCGGACTGGGCGACGGCGCCGTCGCGCATGACGTAGATGGCGTGGGCGTTGCGGAGGAAGTCGAGCTGGTGAGTGACGAGGAGGACGGTCTTGTCCCTGAGGGCGCCGCGGACGCAGTCGCGGAAGATGTCGGAGCCGGTGTGGGCGTCGACGGCGCTAAAGACGTCGTCGAGGAGGTAGACGTCGGCGTCCTGGTAGACGGCGCG ]
[-] EMBL CB633903 [ CCTGTACACCGTGAAGCTCACGTGCCCGCTCGCCCGCTCCTCCGCCTTGATCAGCCGCGACGACGCCTTCGCCGTCTTGATGTCGCCGTTCGACGACGCGCTCTCCCTCTCCTTGGGCGCGGACGACGGCTGGCGGGAGAGCGGCAGGTTGCCCGCGGGCGACGGCGAAGGACCGGGCGCGGCGCTCTCGACGAGCTCCATGGAGGACTCGTGGGCCGCGACGAGCGCGGCGAAGTCGGTGCCGGTGCGGAGGAGGTCGTGGTAGCGGCCGGACTGGGCGACGGCGCCGTCGCGCATGACGTAGATGGCGTGGGCGTTGCGGAGGAAGTCGAGCTGGTGAGTGACGAGGAGGACGGTCTTGTCCCTGAGGGCGCCGCGGACGCAGTCGCGGAAGATGTCGGAGCCGGTGTGGGCGTCGACGGCGCTAAAGACGTCGTCGAGGAGGTAGACGTCGGCGTCCTGGTAGACGGCGCGGGCGAGCTGGATGCGCTGCTTCTGCCCGCCGCTCAGGTTGATGCCGCGCTCCCCGATCTCCGTCTGGTCCCCGAACTCCATCATCTCCAGGTCCTTGTCCAGGGAGCACACCCGGATCGCCTCCCTGTACCGCTCCCGCTGCATCCCCCGCCCGAACAGGATGTTCTCCTCGATCGTCCCGTTCTGGATCCACGCCGTCTGCGCGGCACGAGG]
consensusID : consensus_14299#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 208 fasta sequence
[GCCAAGTGAAAAGACTTTCAATAGAATGCCACTGAGACACAGTGTTGCGGAGAAAAAAAAGAATGCCCCTGAGACACAGATGGCAATGAAATGAATCATGAAGGGTTTGAGGGCTTGTAACTTGTTAGTCTTGAATATATATGTCCAACCCAAACCATATTGATAAATCTATTGAAGATTTGAAGGCGAGTTATTTGCAAAAAAAAAA]
[+] EMBL BI810433 [GCCAAGTGAAAAGACTTTCAATAGAATGCCACTGAGACACAGTGTTGCGGAGAAAAAAAAGAATGCCCCTGAGACACAGATGGCAATGAAATGAATCATGAAGGGTTTGAGGGCTTGTAACTTGTTAGTCTTGAATATATATGTCCAACCCAAACCATATTGATAAATCTATTGAAGATTTGAAGGCGAGTTATTTGCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14299#0 GGTGCTCGCCGTGTCCGTGGCGTGGCAGGGCTCCACCATGGCCGCCGACTACTGGCTCGC 60
consensus_14299#2 ------------------------------------------------------------
consensus_14299#1 ------------------------------------------------------------
consensus_14299#0 CTACCAGACCTCCGGCGACGCGTTCCGGCCCGCCCTCTTCATCAAGGTGTACGCCATCAT 120
consensus_14299#2 ------------------------------------------------------------
consensus_14299#1 ------------------------------------------------------------
consensus_14299#0 CGCCGCCGTGTCCGTGGTGATCGTCACGGTGAGGTCCCTCCTCGTCGCCACCATCGGCCT 180
consensus_14299#2 ------------------------------------------------------------
consensus_14299#1 ------------------------------------------------------------
consensus_14299#0 CGACACCGCCAACATCTTCTTCAGGCAGGTCCTCAGCACCATCCTCCACGCCCCCATGTC 240
consensus_14299#2 ------------------------------------------------------------
consensus_14299#1 ------------------------------------------------------------
consensus_14299#0 CTTCTTCGACACCACCCCCTCCGGCAGGATCCTCACCAGGGCGTCATCGGACCAGACGAA 300
consensus_14299#2 ------------------------------------------------------------
consensus_14299#1 ------------------------------------------------------------
consensus_14299#0 CGTGGATCTGTTGTTGCCGTTCTTCGTGTGGATGAGCGTTTCCATGTACATCACGGTGAT 360
consensus_14299#2 ------------------------------------------------------------
consensus_14299#1 ------------------------------------------------------------
consensus_14299#0 AGGCGTGGTGATCATGACGTGTCAGGTGGCCTGGCCTTCGGTCGTCCTCGTCGTACCCTT 420
consensus_14299#2 ------------------------------------------------------------
consensus_14299#1 ------------------------------------------------------------
consensus_14299#0 GCTCATGCTCAACCTCTGGTTCCGGAAATACTACATCTCGACGTCGAGGGAGCTGACCAG 480
consensus_14299#2 ------------------------------------------------------------
consensus_14299#1 ------------------------------------------------------------
consensus_14299#0 GCTGGAGTCGATCACCAAGGCTCCCGTGATCCACCACTTCTCGGAGACGGTGCAGGGCGT 540
consensus_14299#2 ------------------------------------------------------------
consensus_14299#1 ------------------------------------------------------------
consensus_14299#0 CATGGTGATCAGGTGCTTCCAGAAGCAGGACAACTTCTTCCACGAGAACCTCAGCCGCCT 600
consensus_14299#2 ------------------------------------------------------------
consensus_14299#1 ------------------------------------------------------------
consensus_14299#0 CAACGCCAGCCTCAAGATGGACTTCCACAACAATGCAGCCAACGAGTGGCTCGGCCTGCG 660
consensus_14299#2 ------------------------------------------------------------
consensus_14299#1 ------------------------------------------------------------
consensus_14299#0 GCTGGAGCTCATCGGAAGCCTTGTCCTCTGCGTCACCGCCTTGCTCATGGTCACGTTGCC 720
consensus_14299#2 ------------------------------------------------------------
consensus_14299#1 ------------------------------------------------------------
consensus_14299#0 GTCCAACATCGTCCTTCCAGAGTATGTCGGTTTGTCGCTCTCGTATGGCCTGTCACTTAA 780
consensus_14299#2 ------------------------------------------------------------
consensus_14299#1 ------------------------------------------------------------
consensus_14299#0 CTCGGTGATGTTCTGGGCCATTTGGTTGAGTTGCAATATTGAAAACAAAATGGTCTCAGT 840
consensus_14299#2 ------------------------------------------------------------
consensus_14299#1 ------------------------------------------------------------
consensus_14299#0 TGAGAGGATAAAGCAGTTCACGAACATCCCATCTGAGGCAGAATGGAGGATCAAGGAGAC 900
consensus_14299#2 ------------------------------------------------------------
consensus_14299#1 ------------------------------------------------------------
consensus_14299#0 TGCTCCCTCTGCAAACTGGCCACACAAAGGCGACATCGATATCATTGATCTCAAGTTTCG 960
consensus_14299#2 ------------------------------------------------------------
consensus_14299#1 ------------------------------------------------------------
consensus_14299#0 GTACAGGCACAACACTCCCCTAGTGCTGAAGGGCATCACGCTAAGCATACACGGAGGGGA 1020
consensus_14299#2 ------------------------------------------------------------
consensus_14299#1 ------------------------------------------------------------
consensus_14299#0 GAAGATTGGTGTGGTTGGGAGAACTGGCAGTGGGAAATCGACGCTGATCCAGGCATTGTT 1080
consensus_14299#2 ------------------------------------------------------------
consensus_14299#1 ------------------------------------------------------------
consensus_14299#0 CAGAATAGTTGAGCCTTCTGAGGGGAAGATAATCATCGACGGCATCGACATCTGCACGCT 1140
consensus_14299#2 ------------------------------------------------------------
consensus_14299#1 ------------------------------------------------------------
consensus_14299#0 AGGGCTCCATGATCTGAGGTCTCGGNTCGGCATTATCCCTCAGGAGCCTGTCCTCTTCGA 1200
consensus_14299#2 ------------------------------------------------------------
consensus_14299#1 ------------------------------------------------------------
consensus_14299#0 AGGGACGATTCGAAGCAACATCGACCCGCTTCAGCTGTACTCTGATGATGAAATTTGGCA 1260
consensus_14299#2 ------------------------------------------------------------
consensus_14299#1 ---------------------CGACCCGCTTCAGCTGTACTCTGATGATGAAATTTGGCA 39
consensus_14299#0 GGCCTTGGAACGTTGTCAGCTGAAAGATGCAGTGACTTCAAAACCCGAGAAGCTTGATGC 1320
consensus_14299#2 ------------------------------------------------------------
consensus_14299#1 GGCCTTGGAACGTTGTCAGCTGAAAGATGCAGTGACTTCAAAACCCGAGAAGCTTGATGC 99
consensus_14299#0 ATCAGTTGTCGACAACGGCGAGAACTGGAGTGTTGGGCAGAGGCAGTTGCTGTGCCTTGG 1380
consensus_14299#2 ------------------------------------------------------------
consensus_14299#1 ATCAGTTGTCGACAACGGCGAGAACTGGAGTGTTGGGCAGAGGCAGTTGCTGTGCCTTGG 159
consensus_14299#0 CCGAGTGATGCTGAAGCACAGCAGGATACTGTTCATGGACGAGGCCACTGCTTCAGTGGA 1440
consensus_14299#2 ------------------------------------------------------------
consensus_14299#1 CCGAGTGATGCTGAAGCACAGCAGGATACTGTTCATGGACGAGGCCACTGCTTCAGTGGA 219
consensus_14299#0 TTCCCGAACCGATGCCGTGATTCAGAAGATCATCCGGGAAGAGTTCTCAGCCTGCACCAT 1500
consensus_14299#2 ------------------------------------------------------------
consensus_14299#1 TTCNNAAACCCCCACCACC-CCCACGCCTCCGTCATGTACTGCCTGTACACCGTGAAGCT 278
consensus_14299#0 CATCAGCATCGCGCACAGGATACCGACGGTCATGGACTGCGACAGAGTCCTGGTCATC-- 1558
consensus_14299#2 ------------------------------------------------------------
consensus_14299#1 CACGTGCCCGCTCGCCCGCTCCTCCGCCTTGATCAGCCGCGACGACGCCTTCGCCGTCTT 338
consensus_14299#0 GATGCCGGC-CTAGCGAAGGAATTTGACAGTCCTGCAAACCTGATCGAAAGGCCATCACT 1617
consensus_14299#2 ------------------------------------------------------------
consensus_14299#1 GATGTCGCCGTTCGACGACGCGCTCTCCCTCTCCTTGGGCGCGGACGACGGCTGGCGGGA 398
consensus_14299#0 GTTTGGAGCATTGGTTCAAGAGTACGCAACCCGGTCATCCGATATATAACTAATGATGAG 1677
consensus_14299#2 ------------------------------------------------------------
consensus_14299#1 GAGCGGCAGGTTGCCCGCGGGCGACGGCGAAGGACCGGGCGCGGCGCTCTCGACGAGCTC 458
consensus_14299#0 ATGAGCTGATTTTTGACTCAGAATTTGGGAGGAAATAAGGGCGACGGATGGCCACCCAAG 1737
consensus_14299#2 ------------------------------------------------------------
consensus_14299#1 CATGGAGGACTCGTGGGCCGCGACGAGCGCGGCGAAGTCGGTGCCGGT--GCGGAGGAGG 516
consensus_14299#0 CTGATCTAGTGCTCTCTCCACACTGTGA-GATGCTTTTCAATTTTTATGAGCAGTGAGCC 1796
consensus_14299#2 ------------------------------------------------------------
consensus_14299#1 TCGTGGTAGCGGCCGGACTGGGCGACGGCGCCGTCGCGCATGACGTAGATGGCGTGGGCG 576
consensus_14299#0 TGTGAGTAGTAAGTAGCGTGAGAAGGCACCAGGAAAAGAAATACGAAAAAAAAAACGCAG 1856
consensus_14299#2 ------------------------------------------------------------
consensus_14299#1 TTGCGGAGGAAGTCGAGCTGGTGAGTGACGAGGAGGACGGTCTTGTCCCTGAGGGCGCCG 636
consensus_14299#0 --------GTTTCGGTGTATTGTTTAGCACGTGTTCAGCGCGTGCACTGTGAAAGCTATG 1908
consensus_14299#2 ------------------------------------------------------------
consensus_14299#1 CGGACGCAGTCGCGGAAGATGTCGGAGCCGGTGTGGGCGTCGACGGCGCTAAAGACGTCG 696
consensus_14299#0 ATGCTTTGTGTAACAACGATGAGATG--AAGTTAATTCAATTAATATATTGTTACCGTGG 1966
consensus_14299#2 ------------------GCCAAGTG--AAAAGACTT---TCAATAGAATGCCACTGAGA 37
consensus_14299#1 TCGAGGAGGTAGACGTCGGCGTCCTGGTAGACGGCGCGGGCGAGCTGGATGC-GCTGCTT 755
** * * ** * *
consensus_14299#0 AAAATTTTCAGTCAAAATTAAAGGAGACTTCATAAATCCCTAGACCGTGTTGGAGAAAAA 2026
consensus_14299#2 CACAGTGTTGCGGAGAAAAAAAAGA--------ATGCCCCT-----------GAGACACA 78
consensus_14299#1 CTGCCCGCCGCTCAGGTTGATGCCGCGCTCCCCGATCTCCGTCTGGTCCCCGAACTCCAT 815
* * ** *
consensus_14299#0 AAAATCCCTAGACCGATGCATAAATAATCATAAGGTTTAGGCTTGTAACTTGTTAGTCTT 2086
consensus_14299#2 GATGGCAATGAAATGAATCATGAAGGGTT-TGAGG-----GCTTGTAACTTGTTAGTCTT 132
consensus_14299#1 CATCTCCAGGTCCTTGTCCAGGGAGCACACCCGGA-------TCGCCTCCCTGTACCGCT 868
* * ** * * * * * ** *
consensus_14299#0 GAATATATATGTCCA-CCCAAACCATATTGATAAATCTATTGAA--GATTTGAAGGCGAG 2143
consensus_14299#2 GAATATATATGTCCAACCCAAACCATATTGATAAATCTATTGAA--GATTTGAAGGCGAG 190
consensus_14299#1 CCCGCTGCATCCCCCGCCCGAACAGGATGTTCTCCTCGATCGTCCCGTTCTGGATCCACG 928
* ** ** *** *** ** ** ** * * * ** * * *
consensus_14299#0 TTATTTGCAAGGTAAAAAAAAAAAGA 2169
consensus_14299#2 TTATTTGCAAAAAAAAAA-------- 208
consensus_14299#1 CCGTCTGCGCGGCACGAGG------- 947
* *** * *
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||