cluster # 14316

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Oryza sativa
cluster # 14316 cluster # 14316 Sequences # 16 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_14316#0 length = 702 sequences # 12
consensus_14316#1 length = 375 sequences # 2

consensus_14316#2 length = 359 sequences # 1
consensus_14316#3 length = 214 sequences # 1

consensusID : consensus_14316#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 702
fasta sequence

                              [CATGGGACTGAAGGAGTAGAAAAAGGCTGGTCCCGTTTCTCACTTCGCAACACTAGGCTTTTTGCCCGAAGCGACTCGACTCTACACCCCTC-----ACCCTACCCTACCCTAGCAACGAGGCGGCCATGGCGGACGAGGAGCACGAGGTGTACGGACAGGAGATCCCCCTCGACGGGGAGGACGTCGACATGGGCGCCCCCGGCGACG-AG-GCCGCCAAGATGCAGGAGCTCGACGAGATGAAGCGGAGGCTCAAGGAGATGGAGGAGGAGGCCAACGCGCTCCGCGAGATGCAGACCAAGGTCGCCAAGGAGATGCAAGGTCTGGATCCTAATGCGTCCTCATCTGAATC-AAAAGAGGAAATGGACGCTCGGTCGGTATATGTTGGAAACG-TTGACTATGCATGCACCCCAGAGGAAG-TCCAGCAGCA-TTTTAATTCCTGTGGAACGGTCAACAGGGTGACAATCCTGACAGACAAGTTTGGGCAACCAAAAGGTTTCGCTTATGTTGAATTCCTTGAAGTAGAAGCTGTTCAGGAAGC-TGTT-AAGTTGAACGAATCAGAAC-TGCATGGTCGCCAAATCAAGGTGGCGCC-AAAGAGGACTAACGTCCCTGGGATGAAACATCCCCGCGGAGCAAAGGATCGGGGGTCATCCCTATTTGAAGGCATATGGACACCATTTTACAATTCCTATGGGTTTGGTTCCCCAA]

[+] EMBL CF310081             [CATGGGACTGAAGGAGTAGAAAAAGGCTGGTCCCGTTTCTCACTTCGCAACACTAGGCTTTTTGCCCGAAGCGACTCGACTCTACACCCCTC     ACCCTACCCTACCCTAGCAACGAGGCGGCCATGGCGGACGAGGAGCACGAGGTGTACGGACAGGAGATCCCCCTCGACGGGGAGGACGTCGACATGGGCGCCCCCGGCGACG AG GCCGCCAAGATGCAGGAGCTCGACGAGATGAAGCGGAGGCTCAAGGAGATGGAGGAGGAGGCCAACGCGCTCCGCGAGATGCAGACCAAGGTCGCCAAGGAGATGCAAGGTCTGGATCCTAATGCGTCCTCATCTGAATC AAAAGAGGAAATGGACGCTCGGTCGGTATATGTTGGAAACG TTGACTATGCATGCACCCCAGAGGAAG TCCAGCAGCA TTTTAATTCCTGTGGAACGGTCAACAGGGTGACAATCCTGACAGACAAGTTTGGGCAACCAAAAGGTTTCGCTTATGTTGAATTCCTTGAAGTAGAAGCTGTTCAGGAAGC TGTT AAGTTGAACGAATCAGAAC TGCATGG                                                                                                                                          ]
[+] EMBL AK060429             [                           TGGTCCCGTTTCTCACTTCGCAACACTAGGCTTTTTGCCCGAAGCGACTCGACTCTACACCCCTC     ACCCTACCCTACCCTAGCAACGAGGCGGCCATGGCGGACGAGGAGCACGAGGTGTACGGACAGGAGATCCCCCTCGACGGGGAGGACGTCGACATGGGCGCCCCCGGCGACG AG GCCGCCAAGATGCAGGAGCTCGACGAGATGAAGCGGAGGCTCAAGGAGATGGAGGAGGAGGCCAACGCGCTCCGCGAGATGCAGACCAAGGTCGCCAAGGAGATGCAAGGTCTGGATCCTAATGCGTCCTCATCTGAATC AAAAGAGGAAATGGACGCTCGGTCGGTATATGTTGGAAACG TTGACTATGCATGCACCCCAGAGGAAG TCCAGCAGCA TTTTAATTCCTGTGGAACGGTCAACAGGGTGACAATCCTGACAGACAAGTTTGGGCAACCAAAAGGTTTCGCTTATGTTGAATTCCTTGAAGTAGAAGCTGTTCAGGAAGC TGTT AAGTTGAACGAATCAGAAC TGCATGGTCGCCAAATCAAGGTGGCGCC AAAGAGGACT                                                                                                          ]
[+] EMBL CF319364             [                            GGTCCCGTTTCTCACTTCGCAACACTAGGCTTTTTGCCCGAAGCGACTCGACTCTACACCCCTC     ACCCTACCCTACCCTAGCAACGAGGCGGCCATGGCGGACGAGGAGCACGAGGTGTACGGACAGGAGATCCCCCTCGACGGGGAGGACGTCGACATGGGCGCCCCCGGCGACG AG GCCGCCAAGATGCAGGAGCTCGACGAGATGAAGCGGAGGCTCAAGGAGATGGAGGAGGAGGCCAACGCGCTCCGCGAGATGCAGACCAAGGTCGCCAAGGAGATGCAAGGTCTGGATCCTAATGCGTCCTCATCTGAATC AAAAGAGGAAATGGACGCTCGGTCGGTATATGTTGGAAACG TTGACTATGCATGCACCCCAGAGGAAG TCCAGCAGCA TTTTAATTCCTGTGGAACGGTCAACAGGGTGACAATCCTGACAGACAAGTTTGGGCAACCAAAAGGTTTCGCTTATGTTGAATTCCTTGAAGTAGAAGCTGTTCAGGAAGC TGTT AAGTTGAACGAATCAGAAC TGCATGGTCGCCAAATCAA                                                                                                                              ]
[+] EMBL AK099019             [                               CCCGTTTCTCACTTCGCAACACTAGGCTTTTTGCCCGAAGCGACTCGACTCTACACCCCTC     ACCCTACCCTACCCTAGCAACGAGGCGGCCATGGCGGACGAGGAGCACGAGGTGTACGGACAGGAGATCCCCCTCGACGGGGAGGACGTCGACATGGGCGCCCCCGGCGACG AG GCCGCCAAGATGCAGGAGCTCGACGAGATGAAGCGGAGGCTCAAGGAGATGGAGGAGGAGGCCAACGCGCTCCGCGAGATGCAGACCAAGGTCGCCAAGGAGATGCAAGGTCTGGATCCTAATGCGTCCTCATCTGAATC AAAAGAGGAAATGGACGCTCGGTCGGTATATGTTGGAAACG TTGACTATGCATGCACCCCAGAGGAAG TCCAGCAGCA TTTTAATTCCTGTGGAACGGTCAACAGGGTGACAATCCTGACAGACAAGTTTGGGCAACCAAAAGGTTTCGCTTATGTTGAATTCCTTGAAGTAGAAGCTGTTCAGGAAGC TGTT AAGTTGAACGAATCAGAAC TGCATGGTCGCCAAATCAAGGTGGCGCC AAAGAGGACT                                                                                                          ]
[+] EMBL BE230351             [                                 CGTTTCTCACTTCGCAACACTAGGCTTTTTGCCCGAAGCGACTCGACTCTACACCCCTC     ACCCTACCCTACCCTAGCAACGAGGCGGCCATGGCGGACGAGGAGCACGAGGTGTACGGACAGGAGATCCCCCTCGACGGGGAGGACGTCGACATGGGCGCCCCCGGCGACG AG GCCGCCAAGATGCAGGAGCTCGACGAGATGAAGCGGAGGCTCAAGGAGATGGAGGAGGAGGCCAACGCGCTCCGCGAGATGCAGACCAAGGTCGCCAAGGAGATGCAAGGTCTGGATCCTAATGCGTCCTCATCTGAATC AAAAGAGGAAATGGACGCTCGGTCGGTATATGTTGGAAACG TTGACTATGCATGCACCCCAGAGGAAG TCCAGCAGCA TTTTAATTCCTGTGGAACGGTCAACAGGGTGACAATCCTGACAGACAAGTTTGGGCAACCAAAAGGGTTCGCTTATGTTGAATTCCTTGAAGTAGAAACTG TCAGGAA C TGTT AAGTTGAACGAATCA AAC TGCATGGT                                                                                                                                         ]
[+] EMBL C74041               [                                        CACTTCGCAACACTAGGCTTTTTGCCCGAAGCGACTCGACTCTACACCCCTC     ACCCTACCCTACCCTAGCAACGAGGCGGCCATGGCGGACGAGGAGCACGAGGTGTACGGACAGGAGATCCCCCTCGACGGGGAGGACGTCGACATGGGCGCCCCCGGCGACG AG GCCGCCAAGATGCAGGAGCTCGACGAGATGAAGCGGAGGCTCAAGGAGATGGAGGAGGAGGCCAACGCGCTCCG GAGATGCAGACCAAGGTCGCCAAGGAGATGCAAGGTCTGGATCCTAATGCGTCCTCATCTNAATC AAAAGAGGAAATGGACGCTCGGTCGGTATATGTTTGAAACG TTG CTATGCATTCAACCCAGAGGAAG TCCAGCANCA  TTTAATTCCTGTNG ACCGTCAACAGGGTG CAATCCT NCAG CAAGTTTTGG AACCAAAAGNTTc                                                                                                                                                                                                                     ]
[+] EMBL AU032261             [                                         ACTTCGCAACACTAGGCTTTTTGCCCGANGCGACTCGACTCTACACCCCTC     ACCCTACCCTACCCTAGCAACGAGGCGGCCATGGCGGACGAGGAGCACGAGGTGTACGGACAGGAGATCCCCCTCGACGGGGAGGACGTCGACATGGGCGCCCCCGGCGACG AG GCCGCCAAGATGCAGGAGCTCGACGAGATGAAGCGGAGGCTCAAGGAGATGGAGGAGGAGGCCAACGCGCTCCG GAGATGCAGACCAAGGTCGCCAAGGAGATGCNANGTCTGGATCCTAATGCGTCCTCATCTGAATCAAAAAGANGAAATTGACGCTCGGTCGGTATATGTTGGAAACGTTTGACTATNCATGCACCCCAGAGGAAGTTCCAGCAGCATTTTTAATT                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU184238             [                                          CTTCGCAACACTAGGCTTTTTGCCCGAAGCGACTCGACTCTACACCCCTC     ACCCTACCCTACCCTAGCAACGAGGCGGCCATGGCGGACGAGGAGCACGAGGTGTACGGACAGGAGATCCCCCTCGACGGGGAGGACGTCGACATGGGCGCCCCCGGCGACG AG GCCGCCAAGATGCAGGAGCTCGACGAGATGAAGCGGAGGCTCAAGGAGATGGAGGAGGAGGCCAACGCGCTCCGCGAGATGCAGACCAAGGTCGCCAAGGAGATGCAAGGTCTGGATCCTAATGCGTCCTCATCTGAATC AAAAGAGGAAATGGACGCTCGGTCGGTATATGTTGGAAACG TTGACTATGCATGCACCCCAGAGGAAG TCCAGCAGCA TTTTAATTCCTGTGGAACGGTCAACAGGGTGACAATCCTGACAGACAAGTTTGGGCAACCAAAAGG                                                                                                                                                                                                                        ]
[+] EMBL AU162531             [                                          CTTCGCAACACTAGGCTTTTTGCCCGAAGCGACTNGACTCTACACCCCTC     ACCCTACCCTACCCTAGCAACGAGGCGGCCATGGCGGACGAGGAGCACGAGGTGTACGGACAGGAGANCCCCCTCGACGGGGAGGACGTCGACATGGGCGCTCCCGGCGACG AG GCCGCNAAGATGCAGGAGCTCGACGAGATGAAGCGGAGGCTCAAGGAGATGGAGGAGGAGGCCAACGCGCTCNGCNAGATGCAGACCAAGGTCGCCAANGAGAT CAAGGTCTGGATCCTAATGCGTCCTC                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL C27051               [                                                                         ACTCGACTCTACACCCCTC     ACCCTACCCTACCCTAGCAACGAGGCGGCCATGGCGGACGAGGAGCACGAGGTGTACGGACAGGAGATCCCCCTCGACGGGGAGGACGTCGACATGGGCGCCCCCG  GACGTAGNGCCGCCAAGATGCAGGAGCTCGACGAGATGAAGCGGAGGCTCAAGGAGATGGANGAGGAGGCCAACGCGCTC  CGAGATNCAGACCAAGGTCGCCAAGGAGATGCAAGGTCTGGNTCCTAATGCGTCCTCATCTGAATC AAAAGAGGAAATGGACGCTCGGTCGGTATATGTTGGAAACG TTGACTATGCATTCACCCCAGAG                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BE230290             [                                                                                 CTACACCCCTCACCCTACCCTACCCTACCCTAGCAACGCGGCGGCCATGGCGGACGAGGAGCACGAGGTGTACGGACAGGAGATCCCCCTCGACGGGGAGGACGTCGACATGGGCGCCCCCGGCGACG AG GCCGCCAAGATGCAGGAGCTCGACGAGATGAAGCGGAGGCTCAAGGAGATGGAGGAGGAGGCCAACGCGCTCCGCGAGATGCAGACCAAGGTCGCCAAGGAGATGCAAGGTCTGGATCCTAATGCGTCCTCATCTGAATC AAAAGAGGAAATGGACGCTCGGTCGGTATATGTTGGAAACG TTGACTATGCATGCACCCCAGAGGAAG TCCAGCAGCA TTTTAATTCCTGTGGAACGGTCAACAGGGTGACAATCCTGACAGACAAGTTTGGGCAACCAAAAGGTTTCGCTTATGTTGAATTCCTTGAAGTAGAAGCTGTTCAAGAAGC TGTTAAAGTTGAACGAATCAAAAC TGCATGGTCGCCAAATCAAGGGGGCGCCAAAAAAGGACTAACGTCCCTGGGATGAAACATCCCCGCGGAGCAAAGGATCGGGGGTCATCCCTATTTGAAGGCATATGGACACCATTTTACAATTCCTATGGGTTTGGTTCCCCAA]
[+] EMBL BE230343             [                                                                                 CTACACCCCTCACCCTACCCTACCCTACCCTAGCAACGCGGCGGCCATGGCGGACGAGGAGCACGAGGTGTACGGACAGGAGATCCCCCTCGACGGGGAGGACGTCGACATGGGCGCCCCCGGCGACG AG GCCGCCAAGATGCAGGAGCTCGACGAGATGAAGCGGAGGCTCAAGGAGATGGAGGAGGAGGCCAACGCGCTCCGCGAGATGCAGACCAAGGTCGCCAAGGAGATGCAAGGTCTGGATCCTAATGCGTCCTCATCTGAATC AAAAGAGGAAATGGACGCTCGGTCGGTATATGTTGGAAACG TTGACTATGCATGCACCCCAGAGGAAG TCCAGCAGCA TTTTAATTCCTGTGGAACGGTCAACAGGGTGACAATCCTGACAGACAAGTTTGGGCAACCAAAAGGTTTCGCTTATGTTGAATTCCTTGAAGTAGAAGCTGTTCAGGAAGCTTGTT  AGTTGAACGAATCAAAACTTGCNTGGTCGCCAAATCAAGGTGGCGCC AAAGAGGACTA                                                                                                         ]




>consensus_14316#0
CATGGGACTGAAGGAGTAGAAAAAGGCTGGTCCCGTTTCTCACTTCGCAACACTAGGCTT
TTTGCCCGAAGCGACTCGACTCTACACCCCTCACCCTACCCTACCCTAGCAACGAGGCGG
CCATGGCGGACGAGGAGCACGAGGTGTACGGACAGGAGATCCCCCTCGACGGGGAGGACG
TCGACATGGGCGCCCCCGGCGACGAGGCCGCCAAGATGCAGGAGCTCGACGAGATGAAGC
GGAGGCTCAAGGAGATGGAGGAGGAGGCCAACGCGCTCCGCGAGATGCAGACCAAGGTCG
CCAAGGAGATGCAAGGTCTGGATCCTAATGCGTCCTCATCTGAATCAAAAGAGGAAATGG
ACGCTCGGTCGGTATATGTTGGAAACGTTGACTATGCATGCACCCCAGAGGAAGTCCAGC
AGCATTTTAATTCCTGTGGAACGGTCAACAGGGTGACAATCCTGACAGACAAGTTTGGGC
AACCAAAAGGTTTCGCTTATGTTGAATTCCTTGAAGTAGAAGCTGTTCAGGAAGCTGTTA
AGTTGAACGAATCAGAACTGCATGGTCGCCAAATCAAGGTGGCGCCAAAGAGGACTAACG
TCCCTGGGATGAAACATCCCCGCGGAGCAAAGGATCGGGGGTCATCCCTATTTGAAGGCA
TATGGACACCATTTTACAATTCCTATGGGTTTGGTTCCCCAA

consensusID : consensus_14316#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 375
fasta sequence

                              [CTTCGCAACACTAGGCTTTTTGCCCGAAGCGACTCGACTCTACACCCCTCACCCTACCCTACCCTAGCAACGAGGCGGCCATGGCGGACGAGGAGCACGAGGTGTACGGACAGGAGATCCCCCTCGACGGGGAGGACGTCGACATGGGCGCCCCCGGCGACGAGGCCGCCAAGATGCAGGAGCTCGACGAGATGAAGCGGAGGCTCAAGGAGATGGAGGAGGAGGCCAACGCGCTCCGGAGATGCAGACCAAGGTCGCCAAGGAGATGCAAGGTCTTGGATCCTAATGCGTCCTCATCTTGAATCAAAAGAGGAAATTGACCGTTCGGTCGGTATATNTTTGGAAACGGTAGTCTTCTGTCATCAAGTCTTTGAA]

[+] EMBL C72265               [CTTCGCAACACTAGGCTTTTTGCCCGAAGCGACTCGACTCTACACCCCTCACCCTACCCTACCCTAGCAACGAGGCGGCCATGGCGGACGAGGAGCACGAGGTGTACGGACAGGAGATCCCCCTCGACGGGGAGGACGTCGACATGGGCGCCCCCGGCGACGAGGCCGCCAAGATGCAGGAGCTCGACGAGATGAAGCGGAGGCTCAAGGAGATGGAGGAGGAGGCCAACGCGCTCCGGAGATGCAGACCAAGGTCGCCAAGGAGATGCAAGGTCTTGGATCCTAATGCGTCCTCATCTTGAATCAAAAGAGGAAATTGACCGTTCGGTCGGTATATNTTTGGAAACGGTAGTCTTCTGTCATCAAGTCTTTGAA]
[+] EMBL AU062719             [                                         ACACCNNTCACCNTACCCTACCCTAGCAACGAGGCGGCCATGGCGGACGAGGAGCACGAGGTGTACGGACAGGAGATCCCCNTCGACGGGGAGGACGTCGACATGGGCGCCCCCGGCGACGAGGCCGCCAAGATGCAGGAGCTCGACGAGATGAAGCGGAGGNTCAAGGAGATGGAGGAGGAGGCCAACGCGCTNCGGAGATGCAGACCAAGGTCGCCAAGGAGA                                                                                                             ]




>consensus_14316#1
CTTCGCAACACTAGGCTTTTTGCCCGAAGCGACTCGACTCTACACCCCTCACCCTACCCT
ACCCTAGCAACGAGGCGGCCATGGCGGACGAGGAGCACGAGGTGTACGGACAGGAGATCC
CCCTCGACGGGGAGGACGTCGACATGGGCGCCCCCGGCGACGAGGCCGCCAAGATGCAGG
AGCTCGACGAGATGAAGCGGAGGCTCAAGGAGATGGAGGAGGAGGCCAACGCGCTCCGGA
GATGCAGACCAAGGTCGCCAAGGAGATGCAAGGTCTTGGATCCTAATGCGTCCTCATCTT
GAATCAAAAGAGGAAATTGACCGTTCGGTCGGTATATNTTTGGAAACGGTAGTCTTCTGT
CATCAAGTCTTTGAA

consensusID : consensus_14316#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 359
fasta sequence

                              [TGCAGGAGCTCGACGAGATGAAGCGGAGGCTCAAGGAGATGGAGGAGGAGGCCAACGCGCTCCGCGAGATGCGGACCAAGGTCGCCAAGGAGGGGCAAGGTTTGGATCCTAAAGGGTCCTCATTTGAATCAAAAAAGGAAATGGACGCTCGGTCGGTATATGTTGGAAACGGTAGTTTGCTGTCATCAAGTCTTTGAAATCAAAATTTTGGGGCCTGGTTGAATTTCAGGACAAGTTATAGTGTTAGCTTAGTGGGGGAAGAAAAATATCCTCCAAAGAAAAGAAAAAGAAAAAGAAAAAAAGGAAAGATTTTGAAAAAAAAATTTAAAAAGGAAAAAGAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CF302931             [TGCAGGAGCTCGACGAGATGAAGCGGAGGCTCAAGGAGATGGAGGAGGAGGCCAACGCGCTCCGCGAGATGCGGACCAAGGTCGCCAAGGAGGGGCAAGGTTTGGATCCTAAAGGGTCCTCATTTGAATCAAAAAAGGAAATGGACGCTCGGTCGGTATATGTTGGAAACGGTAGTTTGCTGTCATCAAGTCTTTGAAATCAAAATTTTGGGGCCTGGTTGAATTTCAGGACAAGTTATAGTGTTAGCTTAGTGGGGGAAGAAAAATATCCTCCAAAGAAAAGAAAAAGAAAAAGAAAAAAAGGAAAGATTTTGAAAAAAAAATTTAAAAAGGAAAAAGAAAAAAAAAAAAAAAAAAAA]




>consensus_14316#2
TGCAGGAGCTCGACGAGATGAAGCGGAGGCTCAAGGAGATGGAGGAGGAGGCCAACGCGC
TCCGCGAGATGCGGACCAAGGTCGCCAAGGAGGGGCAAGGTTTGGATCCTAAAGGGTCCT
CATTTGAATCAAAAAAGGAAATGGACGCTCGGTCGGTATATGTTGGAAACGGTAGTTTGC
TGTCATCAAGTCTTTGAAATCAAAATTTTGGGGCCTGGTTGAATTTCAGGACAAGTTATA
GTGTTAGCTTAGTGGGGGAAGAAAAATATCCTCCAAAGAAAAGAAAAAGAAAAAGAAAAA
AAGGAAAGATTTTGAAAAAAAAATTTAAAAAGGAAAAAGAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_14316#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 214
fasta sequence

                              [CTACACCCCTCACCCTACCCTACCCTACCCTAGCAGCGCGGCGGCCATGGCGGGACAGAGGAGCACGAGGTGTACGGACAGGAGATCCCCCTCTACGGAGAGGACAGTCTGACATGGGCCGCCCCCGGCAACTAGGCCAGATAACATGCAGAGAGCTCTACTAGATGAATGGGAGGCTCAGGGAGATGGACGAGGAATCCAACGCACTGCCATA]

[+] EMBL BE230121             [CTACACCCCTCACCCTACCCTACCCTACCCTAGCAGCGCGGCGGCCATGGCGGGACAGAGGAGCACGAGGTGTACGGACAGGAGATCCCCCTCTACGGAGAGGACAGTCTGACATGGGCCGCCCCCGGCAACTAGGCCAGATAACATGCAGAGAGCTCTACTAGATGAATGGGAGGCTCAGGGAGATGGACGAGGAATCCAACGCACTGCCATA]




>consensus_14316#3
CTACACCCCTCACCCTACCCTACCCTACCCTAGCAGCGCGGCGGCCATGGCGGGACAGAG
GAGCACGAGGTGTACGGACAGGAGATCCCCCTCTACGGAGAGGACAGTCTGACATGGGCC
GCCCCCGGCAACTAGGCCAGATAACATGCAGAGAGCTCTACTAGATGAATGGGAGGCTCA
GGGAGATGGACGAGGAATCCAACGCACTGCCATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14316#0      CATGGGACTGAAGGAGTAGAAAAAGGCTGGTCCCGTTTCTCACTTCGCAACACTAGGCTT 60
consensus_14316#3      ------------------------------------------------------------
consensus_14316#1      ------------------------------------------CTTCGCAACACTAGGCTT 18
consensus_14316#2      ------------------------TGCAGGAGCTCGACGAGATGAAGCGGAGGCTCAAGG 36
                                                                                   

consensus_14316#0      TTTGCCCGAAGCGACTCGACTCTACACCCCTCACCCTACCCTACCCTAGCAACGAGGCGG 120
consensus_14316#3      ----------------CTACACCCCTCACCCTACCCTACCCTACCCTAGCAGCGCGGCGG 44
consensus_14316#1      TTTGCCCGAAGCGACTCGACTCTACACCCCTCACCCTACCCTACCCTAGCAACGAGGCGG 78
consensus_14316#2      AGATGGAGGAGGAGGCCAACGCGCTCCGCGAGATGCGGACCAAGGTCGCCAAGGAGG-GG 95
                                       * ** *    * *   *  *   ** *      **  * ** **

consensus_14316#0      CCATGGCGGAC-----GAGGAGCACGAGGTGTACGGACAGGAGATCCCCCTCGACGGGGA 175
consensus_14316#3      CCATGGCGGGAC---AGAGGAGCACGAGGTGTACGGACAGGAGATCCCCCTCTACGGAGA 101
consensus_14316#1      CCATGGCGGAC-----GAGGAGCACGAGGTGTACGGACAGGAGATCCCCCTCGACGGGGA 133
consensus_14316#2      CAAGGTTTGGATCCTAAAGGGTCCTCATTTGAATCAAAAAAGGAAATGGACGCTCGGTCG 155
                       * * *   *        ***  *   *  ** *   * *   **          ***   

consensus_14316#0      GGACG--TCGACATGGGC-GCCCCCGGCGACGAGGCC------GCCAAGATGCAG-GAGC 225
consensus_14316#3      GGACAGTCTGACATGGGCCGCCCCCGGCAACTAGGCCA-----GATAACATGCAGAGAGC 156
consensus_14316#1      GGACG--TCGACATGGGC-GCCCCCGGCGACGAGGCC------GCCAAGATGCAG-GAGC 183
consensus_14316#2      GTATATGTTGGAAACGGTAGTTTGCTGTCATCAAGTCTTTGAAATCAAAATTTTGGGGCC 215
                       * *      *  *  **  *    * *  *  * * *         ** **   * *  *

consensus_14316#0      TCGACGAGATGAAGCGGAGGCT-CAAGG--AGATGGAGGAGGAGGCCAACGCGCTCCGCG 282
consensus_14316#3      TCTACTAGATGAATGGGAGGCT-CAGGG--AGATGGACGAGGAATCCAACGCACTGCCAT 213
consensus_14316#1      TCGACGAGATGAAGCGGAGGCT-CAAGG--AGATGGAGGAGGAGGCCAACGCGCT-CCGG 239
consensus_14316#2      TGGTTGAATTTCAGGACAAGTTATAGTGTTAGCTTAGTGGGGGAAGAAAAATATCCTCCA 275
                       *     *  *  *    * * *  *  *  ** *    * **     **           

consensus_14316#0      AGATGCAGACCAAGGTCGCCAAGGAGATGCAAGGTCT-GGATCCTAATGCGTCCTCATCT 341
consensus_14316#3      A----------------------------------------------------------- 214
consensus_14316#1      AGATGCAGACCAAGGTCGCCAAGGAGATGCAAGGTCTTGGATCCTAATGCGTCCTCATCT 299
consensus_14316#2      AAGAAAAGAAAAAGAAAAAGAAAAAAAGGAAAGATTTTGAAAAAAAAATTTAAAAAGGAA 335
                       *                                                           

consensus_14316#0      -GAATCAAAAGAGGAAATGGAC-GCTCGGTCGGTATATGTTGGAAACGTTGACTATGCAT 399
consensus_14316#3      ------------------------------------------------------------
consensus_14316#1      TGAATCAAAAGAGGAAATTGACCGTTCGGTCGGTATATNTTTGGAAACGGTAGTCTTCTG 359
consensus_14316#2      AAAGAAAAAAAAAAAAAAAAAAAA------------------------------------ 359
                                                                                   

consensus_14316#0      GCACCCCAGAGGAAGTCCAGCAGCATTTTAATTCCTGTGGAACGGTCAACAGGGTGACAA 459
consensus_14316#3      ------------------------------------------------------------
consensus_14316#1      TCATCAAGTCTTTGAA-------------------------------------------- 375
consensus_14316#2      ------------------------------------------------------------
                                                                                   

consensus_14316#0      TCCTGACAGACAAGTTTGGGCAACCAAAAGGTTTCGCTTATGTTGAATTCCTTGAAGTAG 519
consensus_14316#3      ------------------------------------------------------------
consensus_14316#1      ------------------------------------------------------------
consensus_14316#2      ------------------------------------------------------------
                                                                                   

consensus_14316#0      AAGCTGTTCAGGAAGCTGTTAAGTTGAACGAATCAGAACTGCATGGTCGCCAAATCAAGG 579
consensus_14316#3      ------------------------------------------------------------
consensus_14316#1      ------------------------------------------------------------
consensus_14316#2      ------------------------------------------------------------
                                                                                   

consensus_14316#0      TGGCGCCAAAGAGGACTAACGTCCCTGGGATGAAACATCCCCGCGGAGCAAAGGATCGGG 639
consensus_14316#3      ------------------------------------------------------------
consensus_14316#1      ------------------------------------------------------------
consensus_14316#2      ------------------------------------------------------------
                                                                                   

consensus_14316#0      GGTCATCCCTATTTGAAGGCATATGGACACCATTTTACAATTCCTATGGGTTTGGTTCCC 699
consensus_14316#3      ------------------------------------------------------------
consensus_14316#1      ------------------------------------------------------------
consensus_14316#2      ------------------------------------------------------------
                                                                                   

consensus_14316#0      CAA 702
consensus_14316#3      ---
consensus_14316#1      ---
consensus_14316#2      ---