cluster # 14320

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 14320 cluster # 14320 Sequences # 16 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_14320#0 length = 1309 sequences # 10
consensus_14320#1 length = 696 sequences # 2

consensus_14320#2 length = 605 sequences # 3
consensus_14320#3 length = 425 sequences # 1

consensusID : consensus_14320#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1309
fasta sequence

                              [GCAGCGAACCACTCCCAAAACGCCACCAAAACCCTCCTCTCCCCACCTCCGCCGCCGCCGACATGGCCGTCGTCCACCGCCTCCTCCGCCGCGGCCTCTCCGCCGCCTCTCCCCTCCCCTCTCTTCAGGAGCTCGGGAGGCGTCCGGCGAGCTCGTCGGCGGCGGCGGCGGGGGACGCGGCGGCTGAGCTGCGGGGCGCGCGGGAGGACGTCAAGCAGCTGCTCAAGTCCACCTCCTGCCATCCCATCCTGGTTCGGTTAGGGTGGCATGATGCTGGTACTTATGACAAGAACATTACTGAATGGCCAAAGTGTGGTGGTGCCAATGGTAGCTTGAGATTCGAAATTGAGTTAAAACATGCGGCTAATGCAGGTCTTGTGAATGCTTTGAAGCTGATCCAGCCCATCAAAGACAAGCATGCAGGTGTCACTTATGCAGATCTGTTTCAGCTCGCCAGTGCTACAGCCATTGAGGAAGCCGGTGGCCCCAAGATCCCCATGATCTATGGAA-GGG-TTGATGTTGCTGCCCCTGAACAATGCCCGCCAGAGGGGAGACTTCCTGCTGCTGGCCCTCCTTCACCTGCGGAACATCTACGAGAAGTATTCTATAGAATGGGCCTGAGTGACAAGGAAATTGTTGCATTGTCAGGAGCTCATACACTTGGACGATCTAGACCAGAGCGCAGTGGATGGGGCAAACCAGAAACTAAATACACTAAAAACGGACCTGGTGCACCTGGAGGGCAATCTTGGACATCACAGTGGCTGAAGTTTGATAATAGCTACTTCAAGGACATCAAAGAACGCCGAGATGAGGACCTTCTAGTTCTGCCTACTGATGCTGTGCTCTTTGAGGACTCATCATTCAAGATCTATGCTGAAAAGTACGCCGCAGATCAGGATGCATTTTTTGAAGACTATGCTGAAGCTCATGCCAAACTGAGCAATCTCGGAGCAAAGTTTGATCCTCCAAAGGGTATTTCACTGGAATAAGTGGCGTCTGCTGCCGATGAGCTGCATTTTGGCGAATGAACAAGACGATACCCTGTTTCTTCTTGCTACTATAGAGCATATTATGGTTTTATTACCGATCCAGAAATTTAATCCATTGA-TCGGCAAA-TGTGATGTTGGTGTTTTGTATTGAGTTGTGCTCTCCATTAGAAATAAAAATAGCGGTGGCCATTTTCGTTTCCAGGACCAAACATTTTGGCACATTACAATACAATGTTTTAGATGATGTCTGCATTGAGCTCTTACACAGGATGATCAAAATATATGACATAATTTATTACTGAAAAAAAAAAAAAAAA]

[+] EMBL AK061107             [GCAGCGAACCACTCCCAAAACGCCACCAAAACCCTCCTCTCCCCACCTCCGCCGCCGCCGACATGGCCGTCGTCCACCGCCTCCTCCGCCGCGGCCTCTCCGCCGCCTCTCCCCTCCCCTCTCTTCAGGAGCTCGGGAGGCGTCCGGCGAGCTCGTCGGCGGCGGCGGCGGGGGACGCGGCGGCTGAGCTGCGGGGCGCGCGGGAGGACGTCAAGCAGCTGCTCAAGTCCACCTCCTGCCATCCCATCCTGGTTCGGTTAGGGTGGCATGATGCTGGTACTTATGACAAGAACATTACTGAATGGCCAAAGTGTGGTGGTGCCAATGGTAGCTTGAGATTCGAAATTGAGTTAAAACATGCGGCTAATGCAGGTCTTGTGAATGCTTTGAAGCTGATCCAGCCCATCAAAGACAAGCATGCAGGTGTCACTTATGCAGATCTGTTTCAGCTCGCCAGTGCTACAGCCATTGAGGAAGCCGGTGGCCCCAAGATCCCCATGATCTATGGAA GGG TTGATGTTGCTGCCCCTGAACAATGCCCGCCAGAGGGGAGACTTCCTGCTGCTGGCCCTCCTTCACCTGCGGAACATCTACGAGAAGTATTCTATAGAATGGGCCTGAGTGACAAGGAAATTGTTGCATTGTCAGGAGCTCATACACTTGGACGATCTAGACCAGAGCGCAGTGGATGGGGCAAACCAGAAACTAAATACACTAAAAACGGACCTGGTGCACCTGGAGGGCAATCTTGGACATCACAGTGGCTGAAGTTTGATAATAGCTACTTCAAGGACATCAAAGAACGCCGAGATGAGGACCTTCTAGTTCTGCCTACTGATGCTGTGCTCTTTGAGGACTCATCATTCAAGATCTATGCTGAAAAGTACGCCGCAGATCAGGATGCATTTTTTGAAGACTATGCTGAAGCTCATGCCAAACTGAGCAATCTCGGAGCAAAGTTTGATCCTCCAAAGGGTATTTCACTGGAATAAGTGGCGTCTGCTGCCGATGAGCTGCATTTTGGCGAATGAACAAGACGATACCCTGTTTCTTCTTGCTACTATAGAGCATATTATGGTTTTATTACCGATCCAGAAATTTAATCCATTGA TCGGCAAA TGTGATGTTGGTGTTTTGTATTGAGTTGTGCTCTCCATTAGAAATAAAAATAGCGGTGGCCATTTTCGTTTCCAGGACCAAACATTTTGGCACATTACAATACAATGTTTTAGATGATGTCTGCATTGAGCTCTTACACAGGATGATCAAAATATATGACATAA                          ]
[+] EMBL CA753572             [      AACCACTCCCAAAACGCCACCAAAACCCTCCTCTCCCCACCTCCGCCGCCGCCGACATGGCCGTCGTCCACCGCCTCCTCCGCCGCGGCCTCTCCGCCGCCTCTCCCCTCCCCTCTCTTCAGGAGCTCGGGAGGCGTCCGGCGAGCTCGTCGGCGGCGGCGGCGGGGGACGCGGCGGCTGAGCTGCGGGGCGCGCGGGAGGACGTCAAGCAGCTGCTCAAGTCCACCTCCTGCCATCCCATCCTGGTTCGGTTAGGGTGGCATGATGCTGGTACTTATGACAAGAACATTACTGAATGGCCAAAGTGTGGTGGTGCCAATGGTAGCTTGAGATTCGAAATTGAGTTAAAACATGCGGCTAATGCAGGTCTTGTGAATGCTTTGAAGCTGATCCAGCCCATCAAAGACAAGCATGCAGGTGTCACTTATGCAGATCTGTNTCAGCTCGCCAGTGCTACAGCCATTGAGGAAGCCGGTGGCCCCAAGATCCCCATGATCTATGGAA GGG TTGATGTGGCTGCCCC  AATGGTGCCCCCCAGA GGGAGAC TCCTGCTGCTGGCCCTCCTTCA CTGCCGAACAT TCCCAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AK099201             [          ACTCCCAAAACGCCACCAAAACCCTCCTCTCCCCACCTCCGCCGCCGCCGACATGGCCGTCGTCCACCGCCTCCTCCGCCGCGGCCTCTCCGCCGCCTCTCCCCTCCCCTCTCTTCAGGAGCTCGGGAGGCGTCCGGCGAGCTCGTCGGCGGCGGCGGCGGGGGACGCGGCGGCTGAGCTGCGGGGCGCGCGGGAGGACGTCAAGCAGCTGCTCAAGTCCACCTCCTGCCATCCCATCCTGGTTCGGTTAGGGTGGCATGATGCTGGTACTTATGACAAGAACATTACTGAATGGCCAAAGTGTGGTGGTGCCAATGGTAGCTTGAGATTCGAAATTGAGTTAAAACATGCGGCTAATGCAGGTCTTGTGAATGCTTTGAAGCTGATCCAGCCCATCAAAGACAAGCATGCAGGTGTCACTTATGCAGATCTGTTTCAGCTCGCCAGTGCTACAGCCATTGAGGAAGCCGGTGGCCCCAAGATCCCCATGATCTATGGAA GGG TTGATGTTGCTGCCCCTGAACAATGCCCGCCAGAGGGGAGACTTCCTGCTGCTGGCCCTCCTTCACCTGCGGAACATCTACGAGAAGTATTCTATAGAATGGGCCTGAGTGACAAGGAAATTGTTGCATTGTCAGGAGCTCATACACTTGGACGATCTAGACCAGAGCGCAGTGGATGGGGCAAACCAGAAACTAAATACACTAAAAACGGACCTGGTGCACCTGGAGGGCAATCTTGGACATCACAGTGGCTGAAGTTTGATAATAGCTACTTCAAGGACATCAAAGAACGCCGAGATGAGGACCTTCTAGTTCTGCCTACTGATGCTGTGCTCTTTGAGGACTCATCATTCAAGATCTATGCTGAAAAGTACGCCGCAGATCAGGATGCATTTTTTGAAGACTATGCTGAAGCTCATGCCAAACTGAGCAATCTCGGAGCAAAGTTTGATCCTCCAAAGGGTATTTCACTGGAATAAGTGGCGTCTGCTGCCGATGAGCTGCATTTTGGCGAATGAACAAGACGATACCCTGTTTCTTCTTGCTACTATAGAGCATATTATGGTTTTATTACCGATCCAGAAATTTAATCCATTGA TCGGCAAA TGTGATGTTGGTGTTTTGTATTGAGTTGTGCTCTCCATTAGAAATAAAAATAGCGGTGGCCATTTTCGTTTCCAGGACCAAACATTTTGGCACATTACAATACAATGTTTTAGATGATGTCTGCATTGAGCTCTTACACAGGATGATCAAAATATATGACATAA                          ]
[+] EMBL AU164319             [                    CGCCACCAAAACCCTCCTCTCCCCACCTCCGCCGCCGCCGACATGGCCGTCGTCCACCGTCTCCTCCGCCGCGGCCTCTCCGCCGCCTCTCCCCTCCCCTCTCTTCAGGAGCTCGGGAGGCGTCCGGCGAGCTCGTCGGCGGCGGCGGCGGGGGACGCGGCGGCTGAGCTGCGGGGCGCGCGGGAGGACGTCAAGCAGCTGCTCAAGTCCACCTCCTGCCATCCCATCCTGGTTCGGTTAGGGTGGCATGATGCTGGTACTTATGACAAGAACATTACTGAATNGCCAAAGTGTGGTGGTGCCAATGGTAACTTnaaga                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CF325246             [                                                                                                                                                                                        TGAGCTGCGGGGCGCGCGGGAGGACGTCAAGCAGCTGCTCAAGTCCACCTCCTGCCATCCCATCCTGGTTCGGTTAGGGTGGCATGATGCTGGTACTTATGACAAGAACATTACTGAATGGCCAAAGTGTGGTGGTGCCAATGGTAGCTTGAGATTCGAAATTGAGTTAAAACATGCGGCTAATGCAGGTCTTGTGAATGCTTTGAAGCTGATCCAGCCCATCAAAGACAAGCATGCAGGTGTCACTTATGCAGATCTGTTTCAGCTCGCCAGTGCTACAGCCATTGAGGAAGCCGGTGGCCCCAAGATCCCCATGATCTATGGAA GGGTTTGATGTTGCTGCCCCTGAACAATGCCCGCCAGAGGGGAGACTTCCTGCTGCTGGCCCTCCTTCACCTGCGGAACATCTACGAGAAGTATTCTATAGAATGGGCCTGAGTGACAAGGAAATTGTTGCATTGTCAGGAGCTCATACACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CF325222             [                                                                                                                                                                                        TGAGCTGCGGGGCGCGCGGGAGGACGTCAAGCAGCTGCTCAAGTCCACCTCCTGCCATCCCATCCTGGTTCGGTTAGGGTGGCATGATGCTGGTACTTATGACAAGAACATTACTGAATGGCCAAAGTGTGGTGGTGCCAATGGTAGCTTGAGATTCGAAATTGAGTTAAAACATGCGGCTAATGCAGGTCTTGTGAATGCTTTGAAGCTGATCCAGCCCATCAAAGACAAGCATGCAGGTGTCACTTATGCAGATCTGTTTCAGCTCGCCAGTGCTACAGCCATTGAGGAAGCCGGTGGCCCCAAGATCCCCATGATCTATGGAAGGGG TTGATGTTGCTGCCCCTGAACAATGCCCGCCAGAGGGGAGACTTCCTGCTGCTGGCCCTCCTTCACCTGCGGAACATCTACGAGAAGTATTCTATAGAATGGGCCTGAGTGACAAGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BI797996             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TAATAGCTACTTCAAGGACATCAAAGAACGCCGAGATGAGGACCTTCTAGTTCTGCCTACTGATGCTGTGCTCTTTGAGGACTCATCATTCAAGATCTATGCTGAAAAGTACGCCGCAGATCAGGATGCATTTTTTGAAGACTATGCTGAAGCTCATGCC AACTGAGCAATCTCGGAGCAAAGTTTGATCCTCC AAGGGTATTTCACTGGAATAAGTGGCGTCTGCTGCCGATGAGCTGCATTTTGGCGAATGAACAAGACGATACCCTGTTTCTTCTTGCTACTATAGAGCATATTATGGTTTTATTACCGATCCAGAAATTTAATCCATTGACTCGGCAAACTGTGATGTTGGTGTTTTGTATTGAGTTGTGCTCTCCATTAGAAATAAAAATAGCGGTGGCCATTTTCGTTTCCAGGACCAAACATTTTGGCACATTACAATACAATGTTTTAGATGATGTCTGCATTGAGCTCTTACACAGGATGATC AAATATATGACATAATTTATTACTGAAAAAAA         ]
[+] EMBL BE040319             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AGGACATCAAAGAACGCCGAGATGAGGACCTTCTAGTTCTGCCTACTGATGCTGTGCTCTTTGAGGACTCATCATTCAAGATCTATGCTGAAAAGTACGCCGCAGATCAGGATGCATTTTTTGAAGACTATGCTGAAGCTCATGCCAAACTGAGCAATCTCGGAGCAAAGTTTGATCCTCCAAAGGGTATTTCACTGGAATAAGTGGCGTCTGCTGCCGATGAGCTGCATTTTGGCGAATGAACAAGACGATACCCTGTTTCTTCTTGCTACTATAGAGCATATTCTGGTTTTATTACCGATCCAGAAATTTAATCCATTGA TCGGCAAA TGTGATGTTGGTGTTTTGTATTGAGTTGTGCTCTCCATTAGAAATAAAAATAGCGGTGGCCATTTTCGTTTCCAGGACCAAACATTTTGGCACATTACAATACAATGTTTTAGATGATGTCTGCATTGAGCTCTTACACAGGATGATCAAAATATATGACATAATTTATTACTGAAAAAAAAAAAAAAAA]
[+] EMBL AU173022             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AAGTACGCCGCAGATCAGGATGCATTTTTTGAAGACTATGCTGAAGCTCATGCCAAACTGAGCAATCTCGGAGCAAAGTTTGATCCTCCAAAGGGTATTTCACTGGAATAAGTGGCGTCTGCTGCCGATGAGCTGCATTTTGGCGAATGAACAAGACGATACCCTGTTTNTTCTTGCTACTATAGAGCATATTATGGTTTTATTACCGATCCAGAAATTTAATCCATTGA TCGGCAAA TGTGATGTTGGTGTTTTGTATTGAGTTGTGCTCTCCATTANAAATAAAAATAGCGGTGGCCATTTTCGTTTCCAGGACCAAACATTTTGGCACATTACAATACAATGTTTTAGATGATGTCTGCATTGAGCTCTTACACAGGATGATCAAAATATATGACATAATTTNTTA   AAAAAAAAAAAAAAAA]
[+] EMBL AU095912             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CATTTTGGCNCATTACAATACAATGTTTTAGATGATGTCTGCATTGAGCTCTTACACAGGATGATCAAAATATATGACATAATTTATTACTGAnnnn           ]




>consensus_14320#0
GCAGCGAACCACTCCCAAAACGCCACCAAAACCCTCCTCTCCCCACCTCCGCCGCCGCCG
ACATGGCCGTCGTCCACCGCCTCCTCCGCCGCGGCCTCTCCGCCGCCTCTCCCCTCCCCT
CTCTTCAGGAGCTCGGGAGGCGTCCGGCGAGCTCGTCGGCGGCGGCGGCGGGGGACGCGG
CGGCTGAGCTGCGGGGCGCGCGGGAGGACGTCAAGCAGCTGCTCAAGTCCACCTCCTGCC
ATCCCATCCTGGTTCGGTTAGGGTGGCATGATGCTGGTACTTATGACAAGAACATTACTG
AATGGCCAAAGTGTGGTGGTGCCAATGGTAGCTTGAGATTCGAAATTGAGTTAAAACATG
CGGCTAATGCAGGTCTTGTGAATGCTTTGAAGCTGATCCAGCCCATCAAAGACAAGCATG
CAGGTGTCACTTATGCAGATCTGTTTCAGCTCGCCAGTGCTACAGCCATTGAGGAAGCCG
GTGGCCCCAAGATCCCCATGATCTATGGAAGGGTTGATGTTGCTGCCCCTGAACAATGCC
CGCCAGAGGGGAGACTTCCTGCTGCTGGCCCTCCTTCACCTGCGGAACATCTACGAGAAG
TATTCTATAGAATGGGCCTGAGTGACAAGGAAATTGTTGCATTGTCAGGAGCTCATACAC
TTGGACGATCTAGACCAGAGCGCAGTGGATGGGGCAAACCAGAAACTAAATACACTAAAA
ACGGACCTGGTGCACCTGGAGGGCAATCTTGGACATCACAGTGGCTGAAGTTTGATAATA
GCTACTTCAAGGACATCAAAGAACGCCGAGATGAGGACCTTCTAGTTCTGCCTACTGATG
CTGTGCTCTTTGAGGACTCATCATTCAAGATCTATGCTGAAAAGTACGCCGCAGATCAGG
ATGCATTTTTTGAAGACTATGCTGAAGCTCATGCCAAACTGAGCAATCTCGGAGCAAAGT
TTGATCCTCCAAAGGGTATTTCACTGGAATAAGTGGCGTCTGCTGCCGATGAGCTGCATT
TTGGCGAATGAACAAGACGATACCCTGTTTCTTCTTGCTACTATAGAGCATATTATGGTT
TTATTACCGATCCAGAAATTTAATCCATTGATCGGCAAATGTGATGTTGGTGTTTTGTAT
TGAGTTGTGCTCTCCATTAGAAATAAAAATAGCGGTGGCCATTTTCGTTTCCAGGACCAA
ACATTTTGGCACATTACAATACAATGTTTTAGATGATGTCTGCATTGAGCTCTTACACAG
GATGATCAAAATATATGACATAATTTATTACTGAAAAAAAAAAAAAAAA

consensusID : consensus_14320#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 696
fasta sequence

                              [CCCCCCCCAAACCCTTCCTCTCCCCTCGACTCCGGCGCCGACATGGCCGTCGTGCACCGCATCCTCCGCCGCGGGCTCTCCGCCGCCTCTCCCCTCCCTTCTCTCCGCGGCCTCCTCCTCGTCTCCCCTCAGGAGCTCGGCAGGCGTCCGGCGAGCTCGTCGTCGTCGGCGGCGGCGGCTGCGGGGGACGTGGAGGCTGAGCTGCGCGCCGCGCGGGAGGACGTCAGGCAGCTGCTCAAGTCCAACCCCTGCCATCCCATCCTGGTTCGGTTAGGGTGGCATGACGCTGGCACTTACGATAAGAACATCACTGAATGGCCAAAGTGTGGTGGTGCGAATGGTAGCTTGAGATTTGGAGTTGAGTTAGTACATGCAGCTAACAAAGGTCTTCTGAAGGCGTTATTCTTGGTCATTCCCATCAAGAGCAAGTATGCAGGTGTCACTTATGCAGATATATTTCAACTTGCCAGTGCTACAGCCATTGAGGAAGCCGGTGGCCCCAAGATCCCCATGATCTATGGAAGGGCTGATGTTGCTGATGGTGAAGAATGCCCACCTGAGGGGAGACTTCCTGCTGCTGACCAACCTTCACCTGCTGAACACTTGCGAGAAGTATTCTACAGAATGGGCCTGAGTGACAAGGAAATTGTTGCGTTGTCAGGAGCTCATACACTTGGTCGAGCTAGACCAGAGCGT]

[+] EMBL AK073910             [CCCCCCCCAAACCCTTCCTCTCCCCTCGACTCCGGCGCCGACATGGCCGTCGTGCACCGCATCCTCCGCCGCGGGCTCTCCGCCGCCTCTCCCCTCCCTTCTCTCCGCGGCCTCCTCCTCGTCTCCCCTCAGGAGCTCGGCAGGCGTCCGGCGAGCTCGTCGTCGTCGGCGGCGGCGGCTGCGGGGGACGTGGAGGCTGAGCTGCGCGCCGCGCGGGAGGACGTCAGGCAGCTGCTCAAGTCCAACCCCTGCCATCCCATCCTGGTTCGGTTAGGGTGGCATGACGCTGGCACTTACGATAAGAACATCACTGAATGGCCAAAGTGTGGTGGTGCGAATGGTAGCTTGAGATTTGGAGTTGAGTTAGTACATGCAGCTAACAAAGGTCTTCTGAAGGCGTTATTCTTGGTCATTCCCATCAAGAGCAAGTATGCAGGTGTCACTTATGCAGATATATTTCAACTTGCCAGTGCTACAGCCATTGAGGAAGCCGGTGGCCCCAAGATCCCCATGATCTATGGAAGGGCTGATGTTGCTGATGGTGAAGAATGCCCACCTGAGGGGAGACTTCCTGCTGCTGACCAACCTTCACCTGCTGAACACTTGCGAGAAGTATTCTACAGAATGGGCCTGAGTGACAAGGAAATTGTTGCGTTGTCAGGAGCTCATACACTTGGTCGAGCTAGACCAGAGCGT]
[+] EMBL CB685741             [   CCCCCAAAACCTTCCTCTCCCCTGGAGTCCGGCGCCGACATGGCCGTCGCGCACCGCATCCTCCGCCGCGGGCTCTCCGCCGCCTCTCCCCTCCCTTCTCTCCGCGGCCTCCTCCTCGTCTCCCCTCAGGAGCTCGGCAGGCGTCCGGCGAGCTCGTCGTCATCGGCGGCGGCGGGTGCGGGGGACGTGGAGGATGAGCTGCGCGCCGCGCGGGAGGACGTCAGGCAGCTGCTCAAGTCCAACCCCTGCCATCCCATCCTGGTTCGGTTAGGGTGGCATGACGCTGGCACTTACCATAAGAACGGCACTGAATGGCCAAAGTGAGGGGGTGCGAATGGTAGCTTGACATTTGGAGCTGAGTTAAAACATGCAGCTAACACAGGTCTTCTGAAGGCGTTATTCTTGGTCATTCCCATCACGAGCAAGCATGCAGGTGTCACTTATGCAAATATATTTCc                                                                                                                                                                                                                                           ]




>consensus_14320#1
CCCCCCCCAAACCCTTCCTCTCCCCTCGACTCCGGCGCCGACATGGCCGTCGTGCACCGC
ATCCTCCGCCGCGGGCTCTCCGCCGCCTCTCCCCTCCCTTCTCTCCGCGGCCTCCTCCTC
GTCTCCCCTCAGGAGCTCGGCAGGCGTCCGGCGAGCTCGTCGTCGTCGGCGGCGGCGGCT
GCGGGGGACGTGGAGGCTGAGCTGCGCGCCGCGCGGGAGGACGTCAGGCAGCTGCTCAAG
TCCAACCCCTGCCATCCCATCCTGGTTCGGTTAGGGTGGCATGACGCTGGCACTTACGAT
AAGAACATCACTGAATGGCCAAAGTGTGGTGGTGCGAATGGTAGCTTGAGATTTGGAGTT
GAGTTAGTACATGCAGCTAACAAAGGTCTTCTGAAGGCGTTATTCTTGGTCATTCCCATC
AAGAGCAAGTATGCAGGTGTCACTTATGCAGATATATTTCAACTTGCCAGTGCTACAGCC
ATTGAGGAAGCCGGTGGCCCCAAGATCCCCATGATCTATGGAAGGGCTGATGTTGCTGAT
GGTGAAGAATGCCCACCTGAGGGGAGACTTCCTGCTGCTGACCAACCTTCACCTGCTGAA
CACTTGCGAGAAGTATTCTACAGAATGGGCCTGAGTGACAAGGAAATTGTTGCGTTGTCA
GGAGCTCATACACTTGGTCGAGCTAGACCAGAGCGT

consensusID : consensus_14320#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 605
fasta sequence

                              [CCGCTGAAAATGGGCCTGGTGCTCCTGGAGGGCAATCTTGGACATCTGAGTGGCTCAAGTTTGACAACAGCTACTTCAAGGAAATCAAAGAACGCCGAGATGAGGATCTTCTAGTTCTCCCTACTGATGCTGTGCTCTTTGAGGACTCATCATTCAAGATCCATGCTGAAAAGTATGCTGAGGATCAGGATGCATTTTTCGAAGACTATGCTGAAGCTCATGCCAAACT-GAGCAATCTTGGGGCAAAGTTTGATCC-TCCAAAGGGTATTTCAC-TTGAATAGCTGGCGTCAGCTGCCGATGAACTGCATTTTGGCGAGTGATAAACAAGATAATACCTTGTTTGTTCTTGCTACTATAGAGCATATTCTGGTTTTACTACCCATCCAGAAATTTAACTTATTGTAAATGTGATGCTGGTGCTGTGTATTGAGCTGTGTTACTGCTTGCCAAAAAATCTATTGTACTATATTATAAAGATAGCTCGAAAAAGAGCAACCAAATTTGTTCAGGTCAACAATTAGATGCATCACACCCTCAGTTAGATAATACTAGGTTTTTATATAACGAAAAGGGTAATGTGAATTGTGAGTTCCTAAAAAAAAAAA]

[+] EMBL AU030079             [CCGCTGAAAATGGGCCTGGTGCNCCTGGNGGGCAATCTTGGACATCTGAGTGGCTCAAGTTTGACAACAGCTCCTTCAAGGAAATCAANGAACGCCGAGATGAGGATCTTCTNGTTCTCCCTACTGATGCTGTGCTCTTTGAGGACTCATCATTCAAGATCCATGCTGAAAAGTATGCTGAGGATCNGGATGCATTTTTCGAAGACTATGCTGAAGCTCATGCCAAACT GAGCAATCTTGGGGCAAAGTTTGATCC TCCAAAGGGTATTTCAC TTGAATAGCTGGCGTCAGCTGCCGATGAACTGCATTTTGGCGAGTGATAAACAAGATAATACCTTGTTTGTTCTTGCTACTATAGAGCATATTCTGGTTTTACTACCCATCCAGAAATTTAACTTATTGTAAATGTGATGCTGGTGCTGTGTATTGAGCTGTGTTACTGCTTGCCAAAAAA                                                                                                                                                       ]
[-] EMBL CB685742             [          TGGGCCTGGTGCTCCTGGAGGGCAATCTTGGACATCTGAGTGGCTCAAGTTTGACAACAGCTACTTCAAGGAAATCAAAGAACGCCGAGATGAGGATCTTCTAGTTCTCCCTACTGATGCTGTGCTCTTTGAGGACTCATCATTCAAGATCCATGCTGAAAAGTATGCTGAGGATCAGGATGCATTTTTCGAAGACTATGCTGAAGCTCATGCCAAACT GAGCAATCTTGGGGCAAAGTTTGATCC TCCAAAGGGTATTTCAC TTGAATAGCTGGCGTCAGCTGCCGATGAACTGCATTTTGGCGAGTGATAAACAAGATAATCCCTTGTTTGTTCTTGCTACTATAGAGCATATTCTGGTTTTACTACCCATCCAGAAATTTAACTTATTGTAAATGTGATGCTGGTGCTGTGTATTGAGCTGTGTTACTGCTTGCCATCTTATCTATTGTACTATATTATAAAGATAGCTCGAAAAAGAGCAACCAAATTTGTTCAGGTCAACAATTAGATGCATCACACCCTCAGTTAGATAATACTAGGTTTTTATATAACGAAAAGGGTAATGTGAATTGTGAGTTCCTAAAAAAAAAAA]
[+] EMBL AU030078             [            GGCCTGGTGCTCCTGGAGGGCAATCTTGGACATCTGAGTGGCTCAAGTTTGACAACAGCTACTTCAAGGAAATCAAAGAACNCCGAGATGAGGATCTTCTAGTTCTCCCTACTGATGCTGTGCTCTTTGAGGACTCATCATTCAAGATCCATGCTGAAAAGTATGCTGAGGATCAGGATGCATTTTTCGAAGACTATGCTGAAGCTCATGCCAAACTGGAGCAATCTTGGGGCAAAGTTTGATCCGCCCAAAGGGTATTTCACTTTGAATANCTGGCGTCACTTGCCGATG ACTGgca                                                                                                                                                                                                                                                                                                         ]




>consensus_14320#2
CCGCTGAAAATGGGCCTGGTGCTCCTGGAGGGCAATCTTGGACATCTGAGTGGCTCAAGT
TTGACAACAGCTACTTCAAGGAAATCAAAGAACGCCGAGATGAGGATCTTCTAGTTCTCC
CTACTGATGCTGTGCTCTTTGAGGACTCATCATTCAAGATCCATGCTGAAAAGTATGCTG
AGGATCAGGATGCATTTTTCGAAGACTATGCTGAAGCTCATGCCAAACTGAGCAATCTTG
GGGCAAAGTTTGATCCTCCAAAGGGTATTTCACTTGAATAGCTGGCGTCAGCTGCCGATG
AACTGCATTTTGGCGAGTGATAAACAAGATAATACCTTGTTTGTTCTTGCTACTATAGAG
CATATTCTGGTTTTACTACCCATCCAGAAATTTAACTTATTGTAAATGTGATGCTGGTGC
TGTGTATTGAGCTGTGTTACTGCTTGCCAAAAAATCTATTGTACTATATTATAAAGATAG
CTCGAAAAAGAGCAACCAAATTTGTTCAGGTCAACAATTAGATGCATCACACCCTCAGTT
AGATAATACTAGGTTTTTATATAACGAAAAGGGTAATGTGAATTGTGAGTTCCTAAAAAA
AAAAA

consensusID : consensus_14320#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 425
fasta sequence

                              [ACGCCACCAAAACCCTCCTCTCCCCACCTCCGCCGCCGCCGACATGGCCGTCGTCCACCGNCTCCTCCGCCGCGGCCTCTCCGCCGCCTCTCCCCTCCCCTCTCTTCAGGAGCTCGGGAGGCGTCCGGNGAGCTCGTCGGCGGCGGCGGCGGGGGACGCGGCGGCTGAGCTGCGGGGCGCGCGGGAGGACGTCAAGCAGTTGNTCAAGTCCACCTCCTGCCATCCCATCCTGGTTCGGTAGGGTGGATGATGTTGGTACTTATGACAAGACATTANTGATTGGCAAAGTGTNGTGGTGCAATNGTAGTTTAGATTCGAATTGAGTTAAANATCGNTNATGAAGGTTTTGTNATNTTTTAAGTATCCAGCATAAAGAAAGATAAGGTTAATNTTAAGTTTTTTAAGTTGCAGTTNAACATTGGAAG]

[+] EMBL OSS11611A            [ACGCCACCAAAACCCTCCTCTCCCCACCTCCGCCGCCGCCGACATGGCCGTCGTCCACCGNCTCCTCCGCCGCGGCCTCTCCGCCGCCTCTCCCCTCCCCTCTCTTCAGGAGCTCGGGAGGCGTCCGGNGAGCTCGTCGGCGGCGGCGGCGGGGGACGCGGCGGCTGAGCTGCGGGGCGCGCGGGAGGACGTCAAGCAGTTGNTCAAGTCCACCTCCTGCCATCCCATCCTGGTTCGGTAGGGTGGATGATGTTGGTACTTATGACAAGACATTANTGATTGGCAAAGTGTNGTGGTGCAATNGTAGTTTAGATTCGAATTGAGTTAAANATCGNTNATGAAGGTTTTGTNATNTTTTAAGTATCCAGCATAAAGAAAGATAAGGTTAATNTTAAGTTTTTTAAGTTGCAGTTNAACATTGGAAG]




>consensus_14320#3
ACGCCACCAAAACCCTCCTCTCCCCACCTCCGCCGCCGCCGACATGGCCGTCGTCCACCG
NCTCCTCCGCCGCGGCCTCTCCGCCGCCTCTCCCCTCCCCTCTCTTCAGGAGCTCGGGAG
GCGTCCGGNGAGCTCGTCGGCGGCGGCGGCGGGGGACGCGGCGGCTGAGCTGCGGGGCGC
GCGGGAGGACGTCAAGCAGTTGNTCAAGTCCACCTCCTGCCATCCCATCCTGGTTCGGTA
GGGTGGATGATGTTGGTACTTATGACAAGACATTANTGATTGGCAAAGTGTNGTGGTGCA
ATNGTAGTTTAGATTCGAATTGAGTTAAANATCGNTNATGAAGGTTTTGTNATNTTTTAA
GTATCCAGCATAAAGAAAGATAAGGTTAATNTTAAGTTTTTTAAGTTGCAGTTNAACATT
GGAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14320#1      -------------------CCCCCCCCAAACCCTTCCTCTCCCC-TCGACTCCG-GCGCC 39
consensus_14320#3      -------------------ACGCCACCAAAACCCTCCTCTCCCCACCTCCGCCG-CCGCC 40
consensus_14320#0      GCAGCGAACCACTCCCAAAACGCCACCAAAACCCTCCTCTCCCCACCTCCGCCG-CCGCC 59
consensus_14320#2      -----------------------------------CCGCTGAAAATGGGCCTGGTGCTCC 25
                                                          ** **         *   *  * **

consensus_14320#1      GACATGGCCGTCGTGCACCGCATCCTCCGCCGCGGGCTCTCCGCCGCCTCTCCCCTCCCT 99
consensus_14320#3      GACATGGCCGTCGTCCACCGNCTCCTCCGCCGCGGCCTCTCCGCCGCCTCTCCCCTCCCC 100
consensus_14320#0      GACATGGCCGTCGTCCACCGCCTCCTCCGCCGCGGCCTCTCCGCCGCCTCTCCCCTCCCC 119
consensus_14320#2      TGGAGGGCAATCTTGGAC-ATCTGAGTGGCTCAAGTTTGACAACAGCTACTTCAAGGAAA 84
                          * ***  ** *  **    *     **    *  *  *  * **  ** *       

consensus_14320#1      TCTCTCCGCGGCCTCCTCCTCGTCTCCCCTCAGGAGCTCGGCAGGCGTCCGGCGAGCTCG 159
consensus_14320#3      TCTCT------------------------TCAGGAGCTCGGGAGGCGTCCGGNGAGCTCG 136
consensus_14320#0      TCTCT------------------------TCAGGAGCTCGGGAGGCGTCCGGCGAGCTCG 155
consensus_14320#2      TCAAAGAACG-------------CCGAGATGAGGATCTTCTAGTTCTCCCTACTGATGCT 131
                       **                           * **** **       *  **        * 

consensus_14320#1      TCGTCGTCGGCGGCGGCGGCTGCGGGGGACGTGGAGGCTGAGCTGCGCGCCGCGCGGGAG 219
consensus_14320#3      TCG---------GCGGCGGCGGCGGGGGACGCGGCGGCTGAGCTGCGGGGCGCGCGGGAG 187
consensus_14320#0      TCG---------GCGGCGGCGGCGGGGGACGCGGCGGCTGAGCTGCGGGGCGCGCGGGAG 206
consensus_14320#2      GTGC--------TCTTTGAGGACTCATCATTCAAGATCCATGCTGAAAAGTATGCTGAGG 183
                         *          *   *    *     *        *   ****        ** *  *

consensus_14320#1      GACGTCAGGCAGCTGCTCAAGTCCAACCCCTGCCATCCCATCCTGGTTCGGTTAGGGTGG 279
consensus_14320#3      GACGTCAAGCAGTTGNTCAAGTCCACCTCCTGCCATCCCATCCTGGTTCGGT-AGGGTGG 246
consensus_14320#0      GACGTCAAGCAGCTGCTCAAGTCCACCTCCTGCCATCCCATCCTGGTTCGGTTAGGGTGG 266
consensus_14320#2      ATCAGGATGCATTTTTCGAAGACTA--TGCTGAAGCTCATGCCAAACTGAGCAATCTTGG 241
                         *   * ***  *    *** * *    ***     *   **    *  *  *   ***

consensus_14320#1      CATGACGCTGGCACTTACGATAAGAACATCACT-GAATGGCCAAAGTGTGGTGGTG-CGA 337
consensus_14320#3      -ATGATGTTGGTACTTATGACAAGA-CATTANT-GATTGGC-AAAGTGTNGTGGTG-C-A 300
consensus_14320#0      CATGATGCTGGTACTTATGACAAGAACATTACT-GAATGGCCAAAGTGTGGTGGTG-CCA 324
consensus_14320#2      GGCAAAGTTTGATCCTCCAAAGGGTATTTCACTTGAATAGCTGGCGTCAGCTGCCGATGA 301
                           * * * *  * *   *   *    * * * ** * **    **    **  *   *

consensus_14320#1      ATGGTAGCTTGA-GATTTGGAGTTGAGTTAGTACATGCAGCTAACAAAGGTCTTCTGAAG 396
consensus_14320#3      ATNGTAGTTT-A-GATTCGAA-TTGAGTTAA---ANATCGNTNATGAAGGTTTTGTNA-- 352
consensus_14320#0      ATGGTAGCTTGA-GATTCGAAATTGAGTTAAAACATGCGGCTAATGCAGGTCTTGTGAAT 383
consensus_14320#2      ACTGCATTTTGGCGAGTGATAAACAAGATAAT--ACCTTGTTTGTTCTTGCTACTATAGA 359
                       *  * *  **   ** *   *    ** **    *    * *       *       *  

consensus_14320#1      GCGTTATTCTTGGTCA--TTCCCATCAAGAGCAAGTATGCAGGTGTCA--CTTATGCAGA 452
consensus_14320#3      ----TNTTTTAAGTAT--CCAGCATAAAGAAAGATAAGGTTAATNTTAAGTTTTTTAAGT 406
consensus_14320#0      GCTTTGAAGCTGATCC--AGCCCATCAAAGACAAGCATGCAGGTGTCA--CTTATGCAGA 439
consensus_14320#2      GCA-TATTCTGGTTTTACTACCCATCCAGAA-ATTTAACTTATTGTAAATGTGATGCTGG 417
                           *        *        ***  *        *      * * *   *  *   * 

consensus_14320#1      TATATTTCAAC-TTGCCAGTGCTACAGCCATTGAGGAAGCCGGTGGCCCCAAGATCCCCA 511
consensus_14320#3      TGCAGTTNAACATTGGAAG----------------------------------------- 425
consensus_14320#0      TCTGTTTCAGC-TCGCCAGTGCTACAGCCATTGAGGAAGCCGGTGGCCCCAAGATCCCCA 498
consensus_14320#2      TGCTGTGTATT--GAGCTGTGTTACTGCTTGCCAAAAAATCTATTGTACTAT-ATTATAA 474
                       *    *  *         *                                         

consensus_14320#1      TGATCTATGGAAGGGCTGATGTTGCTGATGGTGAAGAATGCCCACCTGAGGGGAGACTTC 571
consensus_14320#3      ------------------------------------------------------------
consensus_14320#0      TGATCTATGGAAGGGTTGATGTTGCTGCCCCTGAACAATGCCCGCCAGAGGGGAGACTTC 558
consensus_14320#2      AGATAGCTCGAAAAAGAGCAACCAAATTTGTTCAGG--TCAACAATTAGATGCATCACAC 532
                                                                                   

consensus_14320#1      CTGCTGCTGACCAACCTTCACCTGCTGAACACTTGCGAGAAGTATTCTACAGAATGGGCC 631
consensus_14320#3      ------------------------------------------------------------
consensus_14320#0      CTGCTGCTGGCCCTCCTTCACCTGCGGAACATCTACGAGAAGTATTCTATAGAATGGGCC 618
consensus_14320#2      CCTCAGTTAGATAATACTAGGTTTTTATATA---ACGAAAAGGGTAATGTGAATTGTGAG 589
                                                                                   

consensus_14320#1      TGAGTGACAAGGAAATTGTTGCGTTGTCAGGAGCTCATACACTTGGTCGAGCTAGACCAG 691
consensus_14320#3      ------------------------------------------------------------
consensus_14320#0      TGAGTGACAAGGAAATTGTTGCATTGTCAGGAGCTCATACACTTGGACGATCTAGACCAG 678
consensus_14320#2      TTCCTAAAAAAAAAAA-------------------------------------------- 605
                                                                                   

consensus_14320#1      AGCGT------------------------------------------------------- 696
consensus_14320#3      ------------------------------------------------------------
consensus_14320#0      AGCGCAGTGGATGGGGCAAACCAGAAACTAAATACACTAAAAACGGACCTGGTGCACCTG 738
consensus_14320#2      ------------------------------------------------------------
                                                                                   

consensus_14320#1      ------------------------------------------------------------
consensus_14320#3      ------------------------------------------------------------
consensus_14320#0      GAGGGCAATCTTGGACATCACAGTGGCTGAAGTTTGATAATAGCTACTTCAAGGACATCA 798
consensus_14320#2      ------------------------------------------------------------
                                                                                   

consensus_14320#1      ------------------------------------------------------------
consensus_14320#3      ------------------------------------------------------------
consensus_14320#0      AAGAACGCCGAGATGAGGACCTTCTAGTTCTGCCTACTGATGCTGTGCTCTTTGAGGACT 858
consensus_14320#2      ------------------------------------------------------------
                                                                                   

consensus_14320#1      ------------------------------------------------------------
consensus_14320#3      ------------------------------------------------------------
consensus_14320#0      CATCATTCAAGATCTATGCTGAAAAGTACGCCGCAGATCAGGATGCATTTTTTGAAGACT 918
consensus_14320#2      ------------------------------------------------------------
                                                                                   

consensus_14320#1      ------------------------------------------------------------
consensus_14320#3      ------------------------------------------------------------
consensus_14320#0      ATGCTGAAGCTCATGCCAAACTGAGCAATCTCGGAGCAAAGTTTGATCCTCCAAAGGGTA 978
consensus_14320#2      ------------------------------------------------------------
                                                                                   

consensus_14320#1      ------------------------------------------------------------
consensus_14320#3      ------------------------------------------------------------
consensus_14320#0      TTTCACTGGAATAAGTGGCGTCTGCTGCCGATGAGCTGCATTTTGGCGAATGAACAAGAC 1038
consensus_14320#2      ------------------------------------------------------------
                                                                                   

consensus_14320#1      ------------------------------------------------------------
consensus_14320#3      ------------------------------------------------------------
consensus_14320#0      GATACCCTGTTTCTTCTTGCTACTATAGAGCATATTATGGTTTTATTACCGATCCAGAAA 1098
consensus_14320#2      ------------------------------------------------------------
                                                                                   

consensus_14320#1      ------------------------------------------------------------
consensus_14320#3      ------------------------------------------------------------
consensus_14320#0      TTTAATCCATTGATCGGCAAATGTGATGTTGGTGTTTTGTATTGAGTTGTGCTCTCCATT 1158
consensus_14320#2      ------------------------------------------------------------
                                                                                   

consensus_14320#1      ------------------------------------------------------------
consensus_14320#3      ------------------------------------------------------------
consensus_14320#0      AGAAATAAAAATAGCGGTGGCCATTTTCGTTTCCAGGACCAAACATTTTGGCACATTACA 1218
consensus_14320#2      ------------------------------------------------------------
                                                                                   

consensus_14320#1      ------------------------------------------------------------
consensus_14320#3      ------------------------------------------------------------
consensus_14320#0      ATACAATGTTTTAGATGATGTCTGCATTGAGCTCTTACACAGGATGATCAAAATATATGA 1278
consensus_14320#2      ------------------------------------------------------------
                                                                                   

consensus_14320#1      -------------------------------
consensus_14320#3      -------------------------------
consensus_14320#0      CATAATTTATTACTGAAAAAAAAAAAAAAAA 1309
consensus_14320#2      -------------------------------