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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14332#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 569 fasta sequence
[AATCCTCTTTTCCCAGAAGAAGAAAAAAGAAGGGCTGCGACTCATTCGAACCGCGCATCTCGTCTCGTCGAAGCGAGCGAAACCACACGCGGCGCGTCGATCCCAACACCACCAACGCAACCCC-TA-CCCATG-GCGGCGGCGGGCGG-C-GGCGGCGCGGGGG-C-GGCCGGAG-GCGGGAAGGTGTCGTTCA-AGA--TCATCCTCACC-TCCGACCCCAAGCTCCCCTTCAAAG-TGTTTAGCGTGCCCGAGGC-GGCGCCG-TTCA-CC-GCGGTGCTCAAGTTCGCCGCCGAGGAGTTCAAGGTCCCGCCCC-AGACCAGCGCCATCATCACC-AACGATGGAGTTGGCATC-AACCCACAGCAAAGTGCAGGCAATGTGTTTCTAAAGCATGGCTCAGAGTTGCGCCTCATTCCCCGCGATAGAG-TTGGAGCATTGGCTGCGCCTTTCTAGATTCTATAGTTATAA-TTGA-GAAACTTAACA-GAATAAAGTC-GATGTT--GGGTGCTTGCTTGC-TTGTAT-AATGTGACAAGTTGATGATAATTTATCGACAGTTTACCTGGTATTTTCAAAAAAAATGCCGGCTG]
[+] EMBL AK059165 [AATCCTCTTTTCCCAGAAGAAGAAAAAAGAAGGGCTGCGACTCATTCGAACCGCGCATCTCGTCTCGTCGAAGCGAGCGAAACCACACGCGGCGCGTCGATCCCAACACCACCAACGCAACCCC TA CCCATG GCGGCGGCGGGCGG C GGCGGCGCGGGGG C GGCCGGAG GCGGGAAGGTGTCGTTCA AGA TCATCCTCACC TCCGACCCCAAGCTCCCCTTCAAAG TGTTTAGCGTGCCCGAGGC GGCGCCG TTCA CC GCGGTGCTCAAGTTCGCCGCCGAGGAGTTCAAGGTCCCGCCCC AGACCAGCGCCATCATCACC AACGATGGAGTTGGCATC AACCCACAGCAAAGTGCAGGCAATGTGTTTCTAAAGCATGGCTCAGAGTTGCGCCTCATTCCCCGCGATAGAG TTGGAGCATTGGCTGCGCCTTTCTAGATTCTATAGTTATAA TTGA GAAACTTAACA GAATAAAGTC GATGTT GGGTGCTTGCTTGC TTGTAT AATGTGACAAGTTGATGATAATTTATCGACAGTTTACCTGGTATTTTCAACATGTTTGCCGGCTG]
[+] EMBL BE230337 [ GAAGAAGAAAAAAGAAGGGCTGCGACTCATTCGAACCGCGCATCTCGTCTCGTCGAAGCGAGCGAAACCACACGCGGCGCGTCGATCCCAACACCACCAACGCAACCCC TA CCCATG GCGGCGGCGGGCGG C GGCGGCGCGGGGG CTGGCCGGAG GCGGGAAGGTGTCGTTCA AGA TCATCCTCACC TCCGACCCCAAGCTCCCCTTCAAAG TGTTTAGCGTGCCCGAGGC GGCGCCG TTCA CC GCGGTGCTCAAGTTCGCCGCCGAGGAGTTCAAGGTCCCGCCCC AGACCAGCGCCATCATCACC AACGATGGAGTTGGCATC AACCCACAGCAAAGTGCAGGCAATGTGTTTCTAAAGCATGGCTCAGAGTTGCGCCTCATTCCCCGCGATAGAG TTGGAGCATTGGCTGCGCCTTTCTAGATTCTATAGTTATAA TTGA GAAACTTAACA GAATAAAGTC GATGTT GGGTGCTTGCTTGC TTGTAT AATGGGACAAGTTGATGATAATTTATCGACAGGTTACC ]
[+] EMBL AU166189 [ GTCGAAGCGAGCGAAACCACACGCGGCG GTCGATCCCAACACCACCAACGCAACCCC TA CCCATG GCGGCGGCGGGCGG C GGCGGCGCGGGGG C GGCCGGAG GGGNGAAGGTGTCGTTCA AGA TCATCCTCACC TCCGACCCCAAGCTCCCCTTCAAAG TGTTTAGCGTGCCCGAGGC GGCGCGT TTCA CC GCGGTGCTCAAGTTCGCCGCCGAGGAGTTCAAGGTCCCGCCCC AGACCAGCGCCATCATCACC AACGATGGAGTTTGCATC AACCCACAGCAAAGTGCANGC ATGTGTTTCTTAAGCATTGCTCAGAGTTTCG CTNATT ]
[+] EMBL AU078228 [ TCGAAGCGAGCGAAACCACACGCGGCGC TCGATCCCAACACCACCAACGCAACCCC TA CCCATG GCGGCGGCGGGCGG C GGCGGCGCGGGGG C GGCCGGAG NGGNGAAGGTGTCGTTCA AGA TCATCCTCACC TCCGACCCCAAGCTCCCCTTCAAAG TGTTTAGCGTGCCCGAGGC GGCGCCGTTTCA CC GCGGTGCTCAAGTTCGCCGCCGAGGAGTTCAAGGTCCCGCCCC AGACCAGCGCCATCATCACC AACGATGGAGTTGGCATC AACCCACAGCAAAGTGCAGGCAATGTGTTTCTAAAG ATGGCTCAGAGTTGCG CTCATTNCCCGCGATAGAG TTGGA NATTNGCTGCG CTTTCTAGATTCTATAG TATAA TTGA G AACTT ACA GAAT AAGTC GATGTT G ]
[+] EMBL AU162225 [ GAAACCACACGCGGCGCGTCGATCCCAACACCACCAACGCAACCCC TA CCCATG GCGGCGGCGGGCGG C GGCGGCGCGGGGG C GGCCGGAG GCGGGAAGGTGTCGTTCA AGA TCATCCTCACC TCCGACCCCAAGCTCCCCTTCAAAG TGTTTAGCGTGCCCNAGGC GGCGCCG TTCA CC GCGGTGCTCAAGTTCGCCGCCGAGGAGTTCAAGGTCCCGCCCC AGACCAGCGCCATCATCACC AACGATGGAGTTGGCATC AACCCACAGCAAAGTGCAGGCAATGTGTTTNTAAAGCATGGCTCANAGTTGCGCCTCATTCCCCGCGATANAG TTGGAGCATTGGCTGCGCCTTTNTAGATTCTATAGTTATAA TTGA GAAACTTAACA GAATAAAGTC GATGTT GGGTGCTTGCTTGC TTGTAT AATGTGACAAGTTGATGATAATTTATCGNCAGTTTACCTGGTAAAAAAAAAAAAAAaaaaaaaaa]
[+] EMBL OSC988 [ AAACCACACGCGGCG GTCGATCCCAACACCACCAACGCAACCCC TA CCCATG GCGGCGGCGGGCGG C GGCGGCGCGGGGG C GGCCGGAG GGGAAGGTGTCGTTCA AGA TCATCCTCACC TCCGACCCCAAGCTCCCCTTCAAAG TGTTTAGCGTGCCCGAGGC GGCGCCN NTCA CC GCGGTGCTCAAGTTCGCCGCCGAGGAGTTCAAGGTCCCGCCCC AGACCAGCGCCATCATCACC AACGATGGAGTTGGCATC AACCCACAGCAAAGTGCAGGCAATGTGTTTCTAAAGCATGGCTCAGAGTTGCGCCTCATTTCCCGCGATAGAGTTTGGAGCATTNGCTNCG CTTTCTAGATTCTATAGTTATAATTTGAGGAAACTTAACAGGANTAAAGTCGGATGTTTGGGGTGCTTNCTTGCTTTGTATAAATGTGACAAG ]
[+] EMBL OS0531A [ ACACGCGGCGC TCGATCCCAACACCACCAACGCAACCCC TA CCCATG GCGGCGGCGGGCGG C GGCGGCGCGGGGG C GGCCGGAG GGGAAGGTGTCGTTCA AGA TCATCCTCACC TCCAACCCCAAGCTCCCCTTCAAAG TGTTTAGCGTGCCCGAGGC GGCGCCT NTCA CC GCGGTGCTCAAGTTCGCCGNCGAGGAGTTCAAGGTCCCGGCCC AGACCAGCGNCATCATCACC AACGATGGAGTTGGCATC AACCCACAGCAAAGTGCAGGCAATGTGTTTCTAAAGCATGGCTCAGAGTTGCG CTNATTnca ]
[+] EMBL BE039802 [ CACGCGGCGCGTCGATCCCAACACCACCAACGCAACCCC TA CCCATG GCGGCGGCGGGCGG C GGCGGCGCGGGGG C GGCCGGAG GCGGGAAGGTGTCGTTCA AGA TCATCCTCACC TCCGACCCCAAGCTCCCCTTCAAAG TGTTTAGCGTGCCCGAGGC GGCGCCG TTCA CC GCGGTGCTCAAGTTCGCCGCCGAGGAGTTCAAGGTCCCGCCCC AGACCAGCGCCATCATCACC AACGATGGAGTTGGCATC AACCCACAGCAAAGTGCAGGCAATGTGTTTCTAAAGCATGGCTCAGAGTTGCGCCTCATTCCCCGCGATAGAG TTGGAGCATTGGCTGCGCCTTTCTAGATTCTATAGTTATAA TTGA GAAACTTAACA GAATAAAGTC GATGTT GGGTGCTTGCTTGC TTGTAT AATGTGACAAGTTGATGATAATTTATCGACAGTTTACCTGGTATTTTCAAAAAAAA ]
[+] EMBL AU058166 [ ACCACCAACGAAACCCC TA CCCATG GCGGCGGCGGGCGG C GGCGGCGCGGGGG C GNCCGGAG GCGGGAAGGTGTCGTTCA AGA TCATCCTCACC TCCGACCCCAAGCTCCCCTTCAAAG TGTTTAGCGTGCCCGAGGC GGCGCCG TTCA CC GCGGTGCTCAAGTTCGCCGCCGAGGNGTTCAAGGTCCCGCCCC AGACCAGCGCCATCATCACC AACGATGGAGTTGGCATC AACCCACAGCAAAGTGCAGGCAATGTGTTTCTAAAGCATGGCTCAGAGTTGCGCCTCATTCCCCGCGATAGAG TTGGAGCATTTG TGCGCCTTTCTAGATTCTATAGTTATAA TTGA GAAACTTAACA GAATAAAGTC GATGTT GGGTGCTTGCTTGC TTGTAT AATGTGACAAGTTGATGATAATTTATCGACAGTTTACCTGGTATTTTCAAAAAA ]
[+] EMBL AU030009 [ CAACGCAACCCCNTA CCCATG GCGGCGGCGGGCGG CGGGCGGCNCGGGGG C GGCCGGAG GCGGGAAGGTGTCGTTCA AGA TCATCCTCACC TCCGACCCCAAGCTCCCCTTCAAAG TGTTTAGCGTGCCCGAGGC GGCGCCG TTCA CC GCGGTGCTCAAGTTCGCCGCCGAGGAGTTCAAGGTCCCGCCCC AGACCAGCGCCATCATCACC AACGATGGAGTTGGCATC AACCCACAGCAAAGTGCAGGCAATGTGTTTCTAAAGCATGGCTCAGAGTTGCGCCTCATTCCCCGCGATAGAG TTGGAGCATTG TGCGCCTTTCTAGATTCTATAGTTATAA TTGA GAAACTTAACA GAATAAAGTC GATGTT GGGTGCTTGCTTGC TTGTAT AATGTGACAAGTTGATGATAATTTATCGACAGTTTACCTGGTAaaaaaa ]
[+] EMBL BI797710 [ cctgACGCAACCCC TATCCCATGTTCGGCGGCGGGCGGTC GGCGGCGCGGGGGTC GGCCGGAGTGCGGGAAGGTGTCGTTCACAGATGTCATCCTCACCGTCCGACCCCAAGCTCCCCTTCAAAG TGTTTAGCGTGCCCGAGGCAGGCGCCG TTCA CCAGCGGTGCTCAAGTTCGCCGCCGAGGAGTTCAAGGTCCCGCCCCAAGACCAGCGCCATCATCACCAAACGATGGAGTTGGCATCAAACCCACAGCAAAGTGCAGGCAATGTGTTTCTAAAGCATGGCTCAGAGTTGCGCCTCATTCCCCGCGATAGAG TTGGAGCATTGGCTGCGCCTTTCTAGAAACTATAGTTATAA TTGA GAAACTTAACA GAATAAAGTC GATGTT GGGTGCTTGCTTGC TTGTAT AATGTGACAAGTTGATGATAATTTATCGACAGTTTACCTGGTATTTTCAAAAAAAA ]
[+] EMBL BI795546 [ CATCCTCACC TCCGACCCCAAGCTCCCCTTCAAAG TGTTTAGCGTGCCCGAGGC GGC CCG TTCA CC GCGGTGCTCAAGTTCGCCGCCGAGGAGTTCAAGGTCCCGCCCC AGACCAGCGCCATCATCACC AACGATGGAGTTGGCATC AACCCACAGCAAAGTGCA GCAATGTGTTTCTAAAGCATGGCTCAGAGTTGCGCCTCATTCCCCGCGATAGAG TTGGAGCATTGGCTGCGCCTTTCTAGAAACTATAGTTATAA TTGA GAAACTTAACA GAATAAAGTC GATGTT GGGTGCTTGCTTGC TTGTAT AATGTGAC AGTTGATGATAATTTATCGAC GTTTACCTGGTATTTTCAAAAA ]
[+] EMBL AU163916 [ CAAGCTCCCCTTCAAAG TGTTTAGCGTGCCCGAGG GGCGCTN TNCA CC GCGGTGCTCAAGTTCGCCGCCGAGGAGTTCAAGGTCCCGCCCC AGACCAGCGCCATCATCACC AACGATGGAGTTGGCATC AACCCACAGCAAAGTGCAGGCAATGTGTTTCTAAAGCATGGCTCAGAGTTGCGCCTCATTCCCCGCGATAGAG TTGGAGCATTGGCTGCGCTNTTCTAGATTCTATAGTTATAA TTGA GAAACTTAACA GAATAAAGTC GATGTT GGGTGCTTGCTTGC TTGTAT AATGTGACAAGTTGATGATAATTTATCGACAGTTTACCTGGGATTT ]
[+] EMBL OSC05315 [ CTTCAAAGTTGTTTANCGTGCCCGAGNC GCCGCCG TTCACCC GCGGTGCTCAAGTTCGCCGCCGAGGAGTTCAAGGTCCCGCCCC AGACCAGCGCCATCATCACC AACGATGGAGTTGGCATC AACCCACAGCAAAGTGCAGGCAATGTGTTTCTAAAGCATGGCTCANAGTTGCGCCTCATTCCCCGCGATAGAG TTGGAGCANTTGCTGCGCCTTTCTAGATTCTATAGTTATAA TTGA GAAACTTAACA GAATAAAGTC GATGTT GGGTGCTTGCTTGC TTGTAT AATGTGACAAGTTGATGATAATTTATCGANAGTTTACNTGGTA AAAAAAA ]
consensusID : consensus_14332#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 423 fasta sequence
[ATTGGCCGGCCGCGGGCCGCCGCCGGCCCCGGGGGCGCCGGAGCCGGGGAAAGTTCCTTCAAAGATCATCCCTCACCCTCCGACCCCAAGCTCCCCTTCAAAGTGTTTAGCGTGCCCGAGCGGCCCGTTCACCGCGGTGCTCAAGTTCCCCCGAGGAGTTCAAGGTCCCGCCCCAGACCAGCGCCATCATCACCAACGATGGAGTTGGCATCAACCCACAGCAAGTCAGCAATGTGTTTCTAAACATGGCTCAGAGTTGCCCTCATTCCCCGCGATAGAGTTGGACATTGGCTGCCCTTTCTAGAAACTATAGTTATAATTGAGAAACTTAACAGAATAAAGTCGATGTTGGGTGCTTGCTTGCTTGTATAATGTGACAAGTTGATGATAACCTATCGACAGTTTACCTGGTATTTTCACAAA]
[+] EMBL BI798276 [ATTGGCCGGCCGCGGGCCGCCGCCGGCCCCGGGGGCGCCGGAGCCGGGGAAAGTTCCTTCAAAGATCATCCCTCACCCTCCGACCCCAAGCTCCCCTTCAAAGTGTTTAGCGTGCCCGAGCGGCCCGTTCACCGCGGTGCTCAAGTTCCCCCGAGGAGTTCAAGGTCCCGCCCCAGACCAGCGCCATCATCACCAACGATGGAGTTGGCATCAACCCACAGCAAGTCAGCAATGTGTTTCTAAACATGGCTCAGAGTTGCCCTCATTCCCCGCGATAGAGTTGGACATTGGCTGCCCTTTCTAGAAACTATAGTTATAATTGAGAAACTTAACAGAATAAAGTCGATGTTGGGTGCTTGCTTGCTTGTATAATGTGACAAGTTGATGATAACCTATCGACAGTTTACCTGGTATTTTCACAAA]
consensusID : consensus_14332#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 376 fasta sequence
[CGAAGCGAGCGAACCACACGCGGCGCGTCGATCCCAACACCACCAACGCAACCCATACCCATGGCGGCGGCGGCCGGCGGCGGCGCGGGGGCGGCCGGAGGCGGGAAGGTGTCGTTCAAGATCATCCTCACCTCCGACCCCAAGCTCCCCTTCAAAGTGTTTAGCGTGCCCGAGGCGGCGCCGTTCACCGCGGTGCTCAAGTTCGCCGCCGAGGNNTTCAAGGTCCCGCCCCANNCCNNNGCCATCATCACCAACGATGGAGTTGGCATCAACCCACACCAAAGTGCAGNCAATGTGTTTCTAAAGCATGGCTNNNNNTNNNNNCNCATTCCNNNNNNTANNNNTGGAGCATTGGCTGNNNCNTTCTAGATTCTAN]
[+] EMBL CF196795 [CGAAGCGAGCGAACCACACGCGGCGCGTCGATCCCAACACCACCAACGCAACCCATACCCATGGCGGCGGCGGCCGGCGGCGGCGCGGGGGCGGCCGGAGGCGGGAAGGTGTCGTTCAAGATCATCCTCACCTCCGACCCCAAGCTCCCCTTCAAAGTGTTTAGCGTGCCCGAGGCGGCGCCGTTCACCGCGGTGCTCAAGTTCGCCGCCGAGGNNTTCAAGGTCCCGCCCCANNCCNNNGCCATCATCACCAACGATGGAGTTGGCATCAACCCACACCAAAGTGCAGNCAATGTGTTTCTAAAGCATGGCTNNNNNTNNNNNCNCATTCCNNNNNNTANNNNTGGAGCATTGGCTGNNNCNTTCTAGATTCTAN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14332#0 AATCCTCTTTTCCCAGAAGAAGAAAAAAGAAGGGCTGCGACTCATTCGAACCGCGCATCT 60
consensus_14332#1 ------------------------------------------------------------
consensus_14332#2 ------------------------------------------------------------
consensus_14332#0 CGTCTCGTCGAAGCGAGCGAAACCACACGCGGCGCGTCGATCCCAACACCACCAACGCAA 120
consensus_14332#1 ------------------------------------------------------------
consensus_14332#2 ---------CGAAGCGAGCGAACCACACGCGGCGCGTCGATCCCAACACCACCAACGCAA 51
consensus_14332#0 CCCCTACCCATGGCGGCGGCGGGCGGCGGC-GGCGCGGGGGCGGCCGGAGGCGGGAAGGT 179
consensus_14332#1 -------ATTGGCCGGCCGCGGGCCGCCGCCGGCCCCGGGGGCGCCGGAGCCGGGGAAAG 53
consensus_14332#2 CCCATACCCATGGCGGCGGCGGCCGGCGGC-GGCGCGGGGGCGGCCGGAGGCGGGAAGGT 110
* **** **** * ** ** *** * **** ******* **** *
consensus_14332#0 GTCGTTCAA-GATCATCC-TCACC-TCCGACCCCAAGCTCCCCTTCAAAGTGTTTAGCGT 236
consensus_14332#1 TTCCTTCAAAGATCATCCCTCACCCTCCGACCCCAAGCTCCCCTTCAAAGTGTTTAGCGT 113
consensus_14332#2 GTCGTTCAA-GATCATCC-TCACC-TCCGACCCCAAGCTCCCCTTCAAAGTGTTTAGCGT 167
** ***** ******** ***** ***********************************
consensus_14332#0 GCCCGAGGCGGCGCCGTTCACCGCGGTGCTCAAGTTCGCCGCCGAGGAGTTCAAGGTCCC 296
consensus_14332#1 GCCCGAG-CGGC-CCGTTCACCGCGGTGCTCAAGTTCCC--CCGAGGAGTTCAAGGTCCC 169
consensus_14332#2 GCCCGAGGCGGCGCCGTTCACCGCGGTGCTCAAGTTCGCCGCCGAGGNNTTCAAGGTCCC 227
******* **** ************************ * ****** ***********
consensus_14332#0 GCCCCAGACCAGCGCCATCATCACCAACGATGGAGTTGGCATCAACCCACAGCAAAGTGC 356
consensus_14332#1 GCCCCAGACCAGCGCCATCATCACCAACGATGGAGTTGGCATCAACCCACAGCAA---GT 226
consensus_14332#2 GCCCCANNCCNNNGCCATCATCACCAACGATGGAGTTGGCATCAACCCACACCAAAGTGC 287
****** ** ************************************** *** *
consensus_14332#0 AGGCAATGTGTTTCTAAAGCATGGCTCAGAGTTGCGCCTCATTCCCCGCGATAGAGTTGG 416
consensus_14332#1 CAGCAATGTGTTTCTAAA-CATGGCTCAGAGTTGC-CCTCATTCCCCGCGATAGAGTTGG 284
consensus_14332#2 AGNCAATGTGTTTCTAAAGCATGGCTNNNNNTNNNNNCNCATTCCNNNNNNTANNNNTGG 347
*************** ******* * * ****** ** ***
consensus_14332#0 AGCATTGGCTGCGCCTTTCTAGATTCTATAGTTATAATTGAGAAACTTAACAGAATAAAG 476
consensus_14332#1 A-CATTGGCTGC-CCTTTCTAGAAACTATAGTTATAATTGAGAAACTTAACAGAATAAAG 342
consensus_14332#2 AGCATTGGCTGNNNCNTTCTAGATTCTAN------------------------------- 376
* ********* * ******* ***
consensus_14332#0 TCGATGTTGGGTGCTTGCTTGCTTGTATAATGTGACAAGTTGATGATAATTTATCGACAG 536
consensus_14332#1 TCGATGTTGGGTGCTTGCTTGCTTGTATAATGTGACAAGTTGATGATAACCTATCGACAG 402
consensus_14332#2 ------------------------------------------------------------
consensus_14332#0 TTTACCTGGTATTTTCAAAAAAAATGCCGGCTG 569
consensus_14332#1 TTTACCTGGTATTTTCACAAA------------ 423
consensus_14332#2 ---------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||