These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14332#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 569 fasta sequence [AATCCTCTTTTCCCAGAAGAAGAAAAAAGAAGGGCTGCGACTCATTCGAACCGCGCATCTCGTCTCGTCGAAGCGAGCGAAACCACACGCGGCGCGTCGATCCCAACACCACCAACGCAACCCC-TA-CCCATG-GCGGCGGCGGGCGG-C-GGCGGCGCGGGGG-C-GGCCGGAG-GCGGGAAGGTGTCGTTCA-AGA--TCATCCTCACC-TCCGACCCCAAGCTCCCCTTCAAAG-TGTTTAGCGTGCCCGAGGC-GGCGCCG-TTCA-CC-GCGGTGCTCAAGTTCGCCGCCGAGGAGTTCAAGGTCCCGCCCC-AGACCAGCGCCATCATCACC-AACGATGGAGTTGGCATC-AACCCACAGCAAAGTGCAGGCAATGTGTTTCTAAAGCATGGCTCAGAGTTGCGCCTCATTCCCCGCGATAGAG-TTGGAGCATTGGCTGCGCCTTTCTAGATTCTATAGTTATAA-TTGA-GAAACTTAACA-GAATAAAGTC-GATGTT--GGGTGCTTGCTTGC-TTGTAT-AATGTGACAAGTTGATGATAATTTATCGACAGTTTACCTGGTATTTTCAAAAAAAATGCCGGCTG] [+] EMBL AK059165 [AATCCTCTTTTCCCAGAAGAAGAAAAAAGAAGGGCTGCGACTCATTCGAACCGCGCATCTCGTCTCGTCGAAGCGAGCGAAACCACACGCGGCGCGTCGATCCCAACACCACCAACGCAACCCC TA CCCATG GCGGCGGCGGGCGG C GGCGGCGCGGGGG C GGCCGGAG GCGGGAAGGTGTCGTTCA AGA TCATCCTCACC TCCGACCCCAAGCTCCCCTTCAAAG TGTTTAGCGTGCCCGAGGC GGCGCCG TTCA CC GCGGTGCTCAAGTTCGCCGCCGAGGAGTTCAAGGTCCCGCCCC AGACCAGCGCCATCATCACC AACGATGGAGTTGGCATC AACCCACAGCAAAGTGCAGGCAATGTGTTTCTAAAGCATGGCTCAGAGTTGCGCCTCATTCCCCGCGATAGAG TTGGAGCATTGGCTGCGCCTTTCTAGATTCTATAGTTATAA TTGA GAAACTTAACA GAATAAAGTC GATGTT GGGTGCTTGCTTGC TTGTAT AATGTGACAAGTTGATGATAATTTATCGACAGTTTACCTGGTATTTTCAACATGTTTGCCGGCTG] [+] EMBL BE230337 [ GAAGAAGAAAAAAGAAGGGCTGCGACTCATTCGAACCGCGCATCTCGTCTCGTCGAAGCGAGCGAAACCACACGCGGCGCGTCGATCCCAACACCACCAACGCAACCCC TA CCCATG GCGGCGGCGGGCGG C GGCGGCGCGGGGG CTGGCCGGAG GCGGGAAGGTGTCGTTCA AGA TCATCCTCACC TCCGACCCCAAGCTCCCCTTCAAAG TGTTTAGCGTGCCCGAGGC GGCGCCG TTCA CC GCGGTGCTCAAGTTCGCCGCCGAGGAGTTCAAGGTCCCGCCCC AGACCAGCGCCATCATCACC AACGATGGAGTTGGCATC AACCCACAGCAAAGTGCAGGCAATGTGTTTCTAAAGCATGGCTCAGAGTTGCGCCTCATTCCCCGCGATAGAG TTGGAGCATTGGCTGCGCCTTTCTAGATTCTATAGTTATAA TTGA GAAACTTAACA GAATAAAGTC GATGTT GGGTGCTTGCTTGC TTGTAT AATGGGACAAGTTGATGATAATTTATCGACAGGTTACC ] [+] EMBL AU166189 [ GTCGAAGCGAGCGAAACCACACGCGGCG GTCGATCCCAACACCACCAACGCAACCCC TA CCCATG GCGGCGGCGGGCGG C GGCGGCGCGGGGG C GGCCGGAG GGGNGAAGGTGTCGTTCA AGA TCATCCTCACC TCCGACCCCAAGCTCCCCTTCAAAG TGTTTAGCGTGCCCGAGGC GGCGCGT TTCA CC GCGGTGCTCAAGTTCGCCGCCGAGGAGTTCAAGGTCCCGCCCC AGACCAGCGCCATCATCACC AACGATGGAGTTTGCATC AACCCACAGCAAAGTGCANGC ATGTGTTTCTTAAGCATTGCTCAGAGTTTCG CTNATT ] [+] EMBL AU078228 [ TCGAAGCGAGCGAAACCACACGCGGCGC TCGATCCCAACACCACCAACGCAACCCC TA CCCATG GCGGCGGCGGGCGG C GGCGGCGCGGGGG C GGCCGGAG NGGNGAAGGTGTCGTTCA AGA TCATCCTCACC TCCGACCCCAAGCTCCCCTTCAAAG TGTTTAGCGTGCCCGAGGC GGCGCCGTTTCA CC GCGGTGCTCAAGTTCGCCGCCGAGGAGTTCAAGGTCCCGCCCC AGACCAGCGCCATCATCACC AACGATGGAGTTGGCATC AACCCACAGCAAAGTGCAGGCAATGTGTTTCTAAAG ATGGCTCAGAGTTGCG CTCATTNCCCGCGATAGAG TTGGA NATTNGCTGCG CTTTCTAGATTCTATAG TATAA TTGA G AACTT ACA GAAT AAGTC GATGTT G ] [+] EMBL AU162225 [ GAAACCACACGCGGCGCGTCGATCCCAACACCACCAACGCAACCCC TA CCCATG GCGGCGGCGGGCGG C GGCGGCGCGGGGG C GGCCGGAG GCGGGAAGGTGTCGTTCA AGA TCATCCTCACC TCCGACCCCAAGCTCCCCTTCAAAG TGTTTAGCGTGCCCNAGGC GGCGCCG TTCA CC GCGGTGCTCAAGTTCGCCGCCGAGGAGTTCAAGGTCCCGCCCC AGACCAGCGCCATCATCACC AACGATGGAGTTGGCATC AACCCACAGCAAAGTGCAGGCAATGTGTTTNTAAAGCATGGCTCANAGTTGCGCCTCATTCCCCGCGATANAG TTGGAGCATTGGCTGCGCCTTTNTAGATTCTATAGTTATAA TTGA GAAACTTAACA GAATAAAGTC GATGTT GGGTGCTTGCTTGC TTGTAT AATGTGACAAGTTGATGATAATTTATCGNCAGTTTACCTGGTAAAAAAAAAAAAAAaaaaaaaaa] [+] EMBL OSC988 [ AAACCACACGCGGCG GTCGATCCCAACACCACCAACGCAACCCC TA CCCATG GCGGCGGCGGGCGG C GGCGGCGCGGGGG C GGCCGGAG GGGAAGGTGTCGTTCA AGA TCATCCTCACC TCCGACCCCAAGCTCCCCTTCAAAG TGTTTAGCGTGCCCGAGGC GGCGCCN NTCA CC GCGGTGCTCAAGTTCGCCGCCGAGGAGTTCAAGGTCCCGCCCC AGACCAGCGCCATCATCACC AACGATGGAGTTGGCATC AACCCACAGCAAAGTGCAGGCAATGTGTTTCTAAAGCATGGCTCAGAGTTGCGCCTCATTTCCCGCGATAGAGTTTGGAGCATTNGCTNCG CTTTCTAGATTCTATAGTTATAATTTGAGGAAACTTAACAGGANTAAAGTCGGATGTTTGGGGTGCTTNCTTGCTTTGTATAAATGTGACAAG ] [+] EMBL OS0531A [ ACACGCGGCGC TCGATCCCAACACCACCAACGCAACCCC TA CCCATG GCGGCGGCGGGCGG C GGCGGCGCGGGGG C GGCCGGAG GGGAAGGTGTCGTTCA AGA TCATCCTCACC TCCAACCCCAAGCTCCCCTTCAAAG TGTTTAGCGTGCCCGAGGC GGCGCCT NTCA CC GCGGTGCTCAAGTTCGCCGNCGAGGAGTTCAAGGTCCCGGCCC AGACCAGCGNCATCATCACC AACGATGGAGTTGGCATC AACCCACAGCAAAGTGCAGGCAATGTGTTTCTAAAGCATGGCTCAGAGTTGCG CTNATTnca ] [+] EMBL BE039802 [ CACGCGGCGCGTCGATCCCAACACCACCAACGCAACCCC TA CCCATG GCGGCGGCGGGCGG C GGCGGCGCGGGGG C GGCCGGAG GCGGGAAGGTGTCGTTCA AGA TCATCCTCACC TCCGACCCCAAGCTCCCCTTCAAAG TGTTTAGCGTGCCCGAGGC GGCGCCG TTCA CC GCGGTGCTCAAGTTCGCCGCCGAGGAGTTCAAGGTCCCGCCCC AGACCAGCGCCATCATCACC AACGATGGAGTTGGCATC AACCCACAGCAAAGTGCAGGCAATGTGTTTCTAAAGCATGGCTCAGAGTTGCGCCTCATTCCCCGCGATAGAG TTGGAGCATTGGCTGCGCCTTTCTAGATTCTATAGTTATAA TTGA GAAACTTAACA GAATAAAGTC GATGTT GGGTGCTTGCTTGC TTGTAT AATGTGACAAGTTGATGATAATTTATCGACAGTTTACCTGGTATTTTCAAAAAAAA ] [+] EMBL AU058166 [ ACCACCAACGAAACCCC TA CCCATG GCGGCGGCGGGCGG C GGCGGCGCGGGGG C GNCCGGAG GCGGGAAGGTGTCGTTCA AGA TCATCCTCACC TCCGACCCCAAGCTCCCCTTCAAAG TGTTTAGCGTGCCCGAGGC GGCGCCG TTCA CC GCGGTGCTCAAGTTCGCCGCCGAGGNGTTCAAGGTCCCGCCCC AGACCAGCGCCATCATCACC AACGATGGAGTTGGCATC AACCCACAGCAAAGTGCAGGCAATGTGTTTCTAAAGCATGGCTCAGAGTTGCGCCTCATTCCCCGCGATAGAG TTGGAGCATTTG TGCGCCTTTCTAGATTCTATAGTTATAA TTGA GAAACTTAACA GAATAAAGTC GATGTT GGGTGCTTGCTTGC TTGTAT AATGTGACAAGTTGATGATAATTTATCGACAGTTTACCTGGTATTTTCAAAAAA ] [+] EMBL AU030009 [ CAACGCAACCCCNTA CCCATG GCGGCGGCGGGCGG CGGGCGGCNCGGGGG C GGCCGGAG GCGGGAAGGTGTCGTTCA AGA TCATCCTCACC TCCGACCCCAAGCTCCCCTTCAAAG TGTTTAGCGTGCCCGAGGC GGCGCCG TTCA CC GCGGTGCTCAAGTTCGCCGCCGAGGAGTTCAAGGTCCCGCCCC AGACCAGCGCCATCATCACC AACGATGGAGTTGGCATC AACCCACAGCAAAGTGCAGGCAATGTGTTTCTAAAGCATGGCTCAGAGTTGCGCCTCATTCCCCGCGATAGAG TTGGAGCATTG TGCGCCTTTCTAGATTCTATAGTTATAA TTGA GAAACTTAACA GAATAAAGTC GATGTT GGGTGCTTGCTTGC TTGTAT AATGTGACAAGTTGATGATAATTTATCGACAGTTTACCTGGTAaaaaaa ] [+] EMBL BI797710 [ cctgACGCAACCCC TATCCCATGTTCGGCGGCGGGCGGTC GGCGGCGCGGGGGTC GGCCGGAGTGCGGGAAGGTGTCGTTCACAGATGTCATCCTCACCGTCCGACCCCAAGCTCCCCTTCAAAG TGTTTAGCGTGCCCGAGGCAGGCGCCG TTCA CCAGCGGTGCTCAAGTTCGCCGCCGAGGAGTTCAAGGTCCCGCCCCAAGACCAGCGCCATCATCACCAAACGATGGAGTTGGCATCAAACCCACAGCAAAGTGCAGGCAATGTGTTTCTAAAGCATGGCTCAGAGTTGCGCCTCATTCCCCGCGATAGAG TTGGAGCATTGGCTGCGCCTTTCTAGAAACTATAGTTATAA TTGA GAAACTTAACA GAATAAAGTC GATGTT GGGTGCTTGCTTGC TTGTAT AATGTGACAAGTTGATGATAATTTATCGACAGTTTACCTGGTATTTTCAAAAAAAA ] [+] EMBL BI795546 [ CATCCTCACC TCCGACCCCAAGCTCCCCTTCAAAG TGTTTAGCGTGCCCGAGGC GGC CCG TTCA CC GCGGTGCTCAAGTTCGCCGCCGAGGAGTTCAAGGTCCCGCCCC AGACCAGCGCCATCATCACC AACGATGGAGTTGGCATC AACCCACAGCAAAGTGCA GCAATGTGTTTCTAAAGCATGGCTCAGAGTTGCGCCTCATTCCCCGCGATAGAG TTGGAGCATTGGCTGCGCCTTTCTAGAAACTATAGTTATAA TTGA GAAACTTAACA GAATAAAGTC GATGTT GGGTGCTTGCTTGC TTGTAT AATGTGAC AGTTGATGATAATTTATCGAC GTTTACCTGGTATTTTCAAAAA ] [+] EMBL AU163916 [ CAAGCTCCCCTTCAAAG TGTTTAGCGTGCCCGAGG GGCGCTN TNCA CC GCGGTGCTCAAGTTCGCCGCCGAGGAGTTCAAGGTCCCGCCCC AGACCAGCGCCATCATCACC AACGATGGAGTTGGCATC AACCCACAGCAAAGTGCAGGCAATGTGTTTCTAAAGCATGGCTCAGAGTTGCGCCTCATTCCCCGCGATAGAG TTGGAGCATTGGCTGCGCTNTTCTAGATTCTATAGTTATAA TTGA GAAACTTAACA GAATAAAGTC GATGTT GGGTGCTTGCTTGC TTGTAT AATGTGACAAGTTGATGATAATTTATCGACAGTTTACCTGGGATTT ] [+] EMBL OSC05315 [ CTTCAAAGTTGTTTANCGTGCCCGAGNC GCCGCCG TTCACCC GCGGTGCTCAAGTTCGCCGCCGAGGAGTTCAAGGTCCCGCCCC AGACCAGCGCCATCATCACC AACGATGGAGTTGGCATC AACCCACAGCAAAGTGCAGGCAATGTGTTTCTAAAGCATGGCTCANAGTTGCGCCTCATTCCCCGCGATAGAG TTGGAGCANTTGCTGCGCCTTTCTAGATTCTATAGTTATAA TTGA GAAACTTAACA GAATAAAGTC GATGTT GGGTGCTTGCTTGC TTGTAT AATGTGACAAGTTGATGATAATTTATCGANAGTTTACNTGGTA AAAAAAA ] consensusID : consensus_14332#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 423 fasta sequence [ATTGGCCGGCCGCGGGCCGCCGCCGGCCCCGGGGGCGCCGGAGCCGGGGAAAGTTCCTTCAAAGATCATCCCTCACCCTCCGACCCCAAGCTCCCCTTCAAAGTGTTTAGCGTGCCCGAGCGGCCCGTTCACCGCGGTGCTCAAGTTCCCCCGAGGAGTTCAAGGTCCCGCCCCAGACCAGCGCCATCATCACCAACGATGGAGTTGGCATCAACCCACAGCAAGTCAGCAATGTGTTTCTAAACATGGCTCAGAGTTGCCCTCATTCCCCGCGATAGAGTTGGACATTGGCTGCCCTTTCTAGAAACTATAGTTATAATTGAGAAACTTAACAGAATAAAGTCGATGTTGGGTGCTTGCTTGCTTGTATAATGTGACAAGTTGATGATAACCTATCGACAGTTTACCTGGTATTTTCACAAA] [+] EMBL BI798276 [ATTGGCCGGCCGCGGGCCGCCGCCGGCCCCGGGGGCGCCGGAGCCGGGGAAAGTTCCTTCAAAGATCATCCCTCACCCTCCGACCCCAAGCTCCCCTTCAAAGTGTTTAGCGTGCCCGAGCGGCCCGTTCACCGCGGTGCTCAAGTTCCCCCGAGGAGTTCAAGGTCCCGCCCCAGACCAGCGCCATCATCACCAACGATGGAGTTGGCATCAACCCACAGCAAGTCAGCAATGTGTTTCTAAACATGGCTCAGAGTTGCCCTCATTCCCCGCGATAGAGTTGGACATTGGCTGCCCTTTCTAGAAACTATAGTTATAATTGAGAAACTTAACAGAATAAAGTCGATGTTGGGTGCTTGCTTGCTTGTATAATGTGACAAGTTGATGATAACCTATCGACAGTTTACCTGGTATTTTCACAAA] consensusID : consensus_14332#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 376 fasta sequence [CGAAGCGAGCGAACCACACGCGGCGCGTCGATCCCAACACCACCAACGCAACCCATACCCATGGCGGCGGCGGCCGGCGGCGGCGCGGGGGCGGCCGGAGGCGGGAAGGTGTCGTTCAAGATCATCCTCACCTCCGACCCCAAGCTCCCCTTCAAAGTGTTTAGCGTGCCCGAGGCGGCGCCGTTCACCGCGGTGCTCAAGTTCGCCGCCGAGGNNTTCAAGGTCCCGCCCCANNCCNNNGCCATCATCACCAACGATGGAGTTGGCATCAACCCACACCAAAGTGCAGNCAATGTGTTTCTAAAGCATGGCTNNNNNTNNNNNCNCATTCCNNNNNNTANNNNTGGAGCATTGGCTGNNNCNTTCTAGATTCTAN] [+] EMBL CF196795 [CGAAGCGAGCGAACCACACGCGGCGCGTCGATCCCAACACCACCAACGCAACCCATACCCATGGCGGCGGCGGCCGGCGGCGGCGCGGGGGCGGCCGGAGGCGGGAAGGTGTCGTTCAAGATCATCCTCACCTCCGACCCCAAGCTCCCCTTCAAAGTGTTTAGCGTGCCCGAGGCGGCGCCGTTCACCGCGGTGCTCAAGTTCGCCGCCGAGGNNTTCAAGGTCCCGCCCCANNCCNNNGCCATCATCACCAACGATGGAGTTGGCATCAACCCACACCAAAGTGCAGNCAATGTGTTTCTAAAGCATGGCTNNNNNTNNNNNCNCATTCCNNNNNNTANNNNTGGAGCATTGGCTGNNNCNTTCTAGATTCTAN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14332#0 AATCCTCTTTTCCCAGAAGAAGAAAAAAGAAGGGCTGCGACTCATTCGAACCGCGCATCT 60 consensus_14332#1 ------------------------------------------------------------ consensus_14332#2 ------------------------------------------------------------ consensus_14332#0 CGTCTCGTCGAAGCGAGCGAAACCACACGCGGCGCGTCGATCCCAACACCACCAACGCAA 120 consensus_14332#1 ------------------------------------------------------------ consensus_14332#2 ---------CGAAGCGAGCGAACCACACGCGGCGCGTCGATCCCAACACCACCAACGCAA 51 consensus_14332#0 CCCCTACCCATGGCGGCGGCGGGCGGCGGC-GGCGCGGGGGCGGCCGGAGGCGGGAAGGT 179 consensus_14332#1 -------ATTGGCCGGCCGCGGGCCGCCGCCGGCCCCGGGGGCGCCGGAGCCGGGGAAAG 53 consensus_14332#2 CCCATACCCATGGCGGCGGCGGCCGGCGGC-GGCGCGGGGGCGGCCGGAGGCGGGAAGGT 110 * **** **** * ** ** *** * **** ******* **** * consensus_14332#0 GTCGTTCAA-GATCATCC-TCACC-TCCGACCCCAAGCTCCCCTTCAAAGTGTTTAGCGT 236 consensus_14332#1 TTCCTTCAAAGATCATCCCTCACCCTCCGACCCCAAGCTCCCCTTCAAAGTGTTTAGCGT 113 consensus_14332#2 GTCGTTCAA-GATCATCC-TCACC-TCCGACCCCAAGCTCCCCTTCAAAGTGTTTAGCGT 167 ** ***** ******** ***** *********************************** consensus_14332#0 GCCCGAGGCGGCGCCGTTCACCGCGGTGCTCAAGTTCGCCGCCGAGGAGTTCAAGGTCCC 296 consensus_14332#1 GCCCGAG-CGGC-CCGTTCACCGCGGTGCTCAAGTTCCC--CCGAGGAGTTCAAGGTCCC 169 consensus_14332#2 GCCCGAGGCGGCGCCGTTCACCGCGGTGCTCAAGTTCGCCGCCGAGGNNTTCAAGGTCCC 227 ******* **** ************************ * ****** *********** consensus_14332#0 GCCCCAGACCAGCGCCATCATCACCAACGATGGAGTTGGCATCAACCCACAGCAAAGTGC 356 consensus_14332#1 GCCCCAGACCAGCGCCATCATCACCAACGATGGAGTTGGCATCAACCCACAGCAA---GT 226 consensus_14332#2 GCCCCANNCCNNNGCCATCATCACCAACGATGGAGTTGGCATCAACCCACACCAAAGTGC 287 ****** ** ************************************** *** * consensus_14332#0 AGGCAATGTGTTTCTAAAGCATGGCTCAGAGTTGCGCCTCATTCCCCGCGATAGAGTTGG 416 consensus_14332#1 CAGCAATGTGTTTCTAAA-CATGGCTCAGAGTTGC-CCTCATTCCCCGCGATAGAGTTGG 284 consensus_14332#2 AGNCAATGTGTTTCTAAAGCATGGCTNNNNNTNNNNNCNCATTCCNNNNNNTANNNNTGG 347 *************** ******* * * ****** ** *** consensus_14332#0 AGCATTGGCTGCGCCTTTCTAGATTCTATAGTTATAATTGAGAAACTTAACAGAATAAAG 476 consensus_14332#1 A-CATTGGCTGC-CCTTTCTAGAAACTATAGTTATAATTGAGAAACTTAACAGAATAAAG 342 consensus_14332#2 AGCATTGGCTGNNNCNTTCTAGATTCTAN------------------------------- 376 * ********* * ******* *** consensus_14332#0 TCGATGTTGGGTGCTTGCTTGCTTGTATAATGTGACAAGTTGATGATAATTTATCGACAG 536 consensus_14332#1 TCGATGTTGGGTGCTTGCTTGCTTGTATAATGTGACAAGTTGATGATAACCTATCGACAG 402 consensus_14332#2 ------------------------------------------------------------ consensus_14332#0 TTTACCTGGTATTTTCAAAAAAAATGCCGGCTG 569 consensus_14332#1 TTTACCTGGTATTTTCACAAA------------ 423 consensus_14332#2 --------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||