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Oryza sativa
cluster # 14342 cluster # 14342       Sequences # 16       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14342#0 length = 603 sequences # 7  
consensus_14342#1 length = 313 sequences # 9  

consensusID : consensus_14342#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 603
fasta sequence
                              [TTTTTTTTTTTTTTTTTTTTTT---GTTTAAATGCGGGTCTATCATTCCGTCATCATCAAGAGTTAACTTATGCAGGATTTCTCCATTACAAAGTATACTCGGAAGATAATAGGGAAGTACGACATGAAAGTGGTCTGATTTCTACTTATCAAGTTCACAAAAATTGAGATCACATGGTTTCTATACAATGGTTTCTTCCATGCGACAATATAGAAAAATAGCAATCATAGCACTAGGAAAGCCGATAGCAAGATTGTACAGTTAGCAACGACTTCATAGTCCTCATAAAATGACCAGCTTCACTGCCTGAAATGATCATCATTGCCACGAGAATTCCTCCATTGCTCCGATAGCTCCTCCCTCACTTCTTTAGCTTTGGACGATAGATTCTCAAGAGACTTGTTGGTCCTCACAGCAAATCTCTGGAAGGTA-CGGTTGTTGGCGAGCCCCTCGACGATGAACTCGTTGACGACGTAGCTGAGCACCCTCCCGAACAGGTTCCCGCCGCCGGCCATGGCGAAGAGCAGGAGGAAGCTTCCAGAGAGAAGGCGGGGGTGG-GAGGGGA--TTTTGC-TATTATTAACCGGAGCGGGCGCTTGCCCCCCTTG]

[+] EMBL CA760208             [TTTTTTTTTTTTTTTTTTTTTTAACGTTTAAATGCGGGTCTATCATTCCGTCATCATCAAGAGTTAACTTATGCAGGATTTCTCCATTACAAAGTATACTCGGAAGATAATAGGGAAGTACGACATGAAAGGGGTCTGATTTCTACTTATCAAGTTCACAAAAATTGAGATCACATGGTTTCTATACAATGGTTTCTTCCATGCGACAATATAGAAAAATAGCAATCATAGCACTAGGAAAGCCGATAGCAAGATTGTACAGTTAGCAACGACTTCATAGTCCTCATAAAATGACCAGCTTCACTGCCTGAAATGATCATCATTGCCACGAGAATTCCTCCATTGCTCCAATAGCTCCTCCCTCACTTCTTTAGCTTTGGACGATAGATTCTCAAGAGACTTGTTGGTCCTCACAGCAAATCTCTGGAAGGTACCGGTTGTTGGCGAGCCCCTCGACAATAAACTCGTTGACGACNTANCTGAGCACCCTCCCAAACAGGTTCCCGCCGCCGGCCATGGCAAAAAGCAGGAGGAAGCTTCCAAAGAGAAGGC GGGGTGGAGGGGGGAATTTTTGCTTATTATTAACCGGA CGGGCGCTTGCCCCCCTTG]
[-] EMBL CA998900             [             TTTTTTTTT   GTTTAAATGCGGGTCTATCATTCCGTCATCATCAAGAGTTAACTTATGCAGGATTTCTCCATTACAAAGTATACTCGGAAGATAATAGGGAAGTACGACATGAAAGTGGTCTGATTTCTACTTATCAAGTTCACAAAAATTGAGATCACATGGTTTCTATACAATGGTTTCTTCCATGCGACAATATAGAAAAATAGCAATCATAGCACTAGGAAAGCCGATAGCAAGATTGTACAGTTAGCAACGACTTCATAGTCCTCATAAAATGACCAGCTTCACTGACTGAAATGATCATCATTGCCACGAGAATTCCTCCATTGCTCCGATAGCTCCTCCCTCACTTCTTTAGCTTTGGACGATAGATTCTCAAGAGACTTGTTGGTCCTCACAGCAAATCTCTGGAAGGTA CGGTTGTTGGCGAGCCCCTCGACGATGAACTCGTTGACGACGTAGCT                                                                                                                                  ]
[-] EMBL BI799936             [                TTTTTT   TTTTAAATGCGGGTCTATCATTCCGTCATCATCAAGAGTTAACTTATGCAGGATTTCTCCATTACAAAGTATACTCGGAAGATAATAGGGAAGTACGACATGAAAGTGGTCTGATTTCTACTTATCAAGTTCACAAAAATTGAGATCACATGGTTTCTATACAA GGTTTCTT                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL AK121759             [                                TGCGGGTCTATCATTCCGTCATCATCAAGAGTTAACTTATGCAGGATTTCTCCATTACAAAGTATACTCGGAAGATAATAGGGAAGTACGACATGAAAGTGGTCTGATTTCTACTTATCAAGTTCACAAAAATTGAGATCACATGGTTTCTATACAATGGTTTCTTCCATGCGACAATATAGAAAAATAGCAATCATAGCACTAGGAAAGCCGATAGCAAGATTGTACAGTTAGCAACGACTTCATAGTCCTCATAAAATGACCAGCTTCACTGCCTGAAATGATCATCATTGCCACGAGAATTCCTCCATTGCTCCGATAGCTCCTCCCTCACTTCTTTAGCTTTGGACGATAGATTCTCAAGAGACTTGTTGGTCCTCACAGCAAATCTCTGGAAGGTA CGGTTGTTGGCGAGCCCCTCGACGATGAACTCGTTGACGACGTAGCTGAGCACCCTCCCGAACAGGTTCCCGCCGCCGGCCATGGCGAAGAGCAGGAGGAAGCTTCCAGAGAGAAGGCGGGGGTGG GAGGGGA  TTTTGC TATTATTAACCGGAGCGG                ]
[+] EMBL BI305888             [                                                  TCATCATCAAGAGTTAACTTATGCAGGATTTCTCCATTACAAAGTATACTCGGAAGATAATAGGGAAGTACGACATGAAAGTGGTCTGATTTCTACTTATCAAGTTCACAAAAATTGAGATCACATGGTTTCTATACAATGGTTTCTTCCATGCGACAATATAGAAAAATAGCAATCATAGCACTAGGAAAGCCGATTGCAAGATTGTACAGTTAGCAACGACTTCATAGTCCTCATAAAATGACCAGCTTCACTGCCTGAAATGATCATC                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BI305745             [                                                  TCATCATCAAGAGTTAACTTATGCAGGATTTCTCCATTACAAAGTATACTCGGAAGATAATAGGGAAGTACGACATGAAAGTGGTCTGATTTCTACTTATCAAGTTCACAAAAATTGAGATCACATGGTTTCTATACAATGGTTTCTTCCATGCGACAATATAGAAAAATAGCAATCATAGCACTAGGAAAGCCGATAGCAAGATTGTACAGTTAGCAACGACTTCATAGTCCTCATAAAATGACCAGCTTCACTGCCTGAAATGATCATC                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CF313864             [                                                            GAGTTAACTTATGCAGGATTTCTCCATTACANAGTATACTCGGAAGATAATAGGGAAGTACGACATGAAAGTGGTCTGATTTCTACTTATCAAGTTCACAAAAATTGAGATCACATGGTTTCTATACAATGGTTTCTTCCATGCGACAATATAGAAAAATAGCAATCATAGCACTAGGAAAGCCGATAGCAAGATTGTACAGTTAGCAACGACTTCATAGTCCTCATAAAATGACCAGCTTCACTGCCTGAAATGATCATCATTGCCACGAGAATTCCTCCATTGCTCCGATAGCTCCTCCCTCACTTCTTTAGCTTTGGACGATAGATTCTCAAGAGACTTGTTGGTCCTCACAGCAAATCTCTGGAAGGTA CGGTTGTTGGCGAGCCCCTCGACGATGAACTCGTTGACGACGTAGCTGAGCACCCTCCCGAACAGGTTCCCGCCGCCGGCCATGGCGAAGAGCAGGAGGAAGCTTCCAGAGAGAAGGCGGGGGTGG GAGGGGA  TTTTGC TATTATTAACCGGAGCGG                ]


>consensus_14342#0 TTTTTTTTTTTTTTTTTTTTTTGTTTAAATGCGGGTCTATCATTCCGTCATCATCAAGAG TTAACTTATGCAGGATTTCTCCATTACAAAGTATACTCGGAAGATAATAGGGAAGTACGA CATGAAAGTGGTCTGATTTCTACTTATCAAGTTCACAAAAATTGAGATCACATGGTTTCT ATACAATGGTTTCTTCCATGCGACAATATAGAAAAATAGCAATCATAGCACTAGGAAAGC CGATAGCAAGATTGTACAGTTAGCAACGACTTCATAGTCCTCATAAAATGACCAGCTTCA CTGCCTGAAATGATCATCATTGCCACGAGAATTCCTCCATTGCTCCGATAGCTCCTCCCT CACTTCTTTAGCTTTGGACGATAGATTCTCAAGAGACTTGTTGGTCCTCACAGCAAATCT CTGGAAGGTACGGTTGTTGGCGAGCCCCTCGACGATGAACTCGTTGACGACGTAGCTGAG CACCCTCCCGAACAGGTTCCCGCCGCCGGCCATGGCGAAGAGCAGGAGGAAGCTTCCAGA GAGAAGGCGGGGGTGGGAGGGGATTTTGCTATTATTAACCGGAGCGGGCGCTTGCCCCCC TTG



consensusID : consensus_14342#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 313
fasta sequence
                              [TAGG-AC--ACCAACGAAC-GTTTAAATGCGGGTCTATCATTCC-GTCATCATCAAGAGTTAACTTATGCA-GGATTTCTCC--A-TTACA-AA-GTATA-C-TC--GGAAG-ATAAT-A-GGGAAGTACGACA-T-G-AAA-GTGGTCTGATTTCTACTTATCAA-GTTCACAAAAATTGAGATCACAT-GGTTTCTATACAA-GGGTTTCTTCCAT-GCGACAATATAGAAAAATAGCAATCATAGCACTAGGAAAGCCGATAGCAAGATTGTACAGTTAGCAACGACTTCATAGTCCTCATAAAATGACCAGCTTCACTGCCTGAAATGATCATCA]

[+] EMBL CB965517             [TAGGAACAAACCAACGAACNGTTTAAATGCGGGTCTATCATTCC GTCATCATCAAGAGTTAACTTATGCA GGATTTCTCC  ANTTACACAAGGTATA C TCCNGGAAG ATAAT AGGGGAAGTACGACA T G AAA GGGGTCTGATTTCTACTTATCAA GTTCACAAAAATTGAGATCACAT GGTTTCTATACAA GGGTTTCTTCCAT GCGACAATATAGAAAAATAGCAATCATAGCACTAGGAAAGCCGATAGCAAGATTGTACAGTTAGCAACGACTTCATAGTCCTCATAAAATGACCAGCTTCACTGCCTGAAATGATCATC ]
[+] EMBL CB966518             [TAGG AC  ACCAACGAAC GTTTAAATGCGGGTCTATCATTCC GTCATCATCAAGAGTTAACTTATGCA GGATTTCTCC  A TTACA AA GTATACC TC  GGAAG ATAAT A GGGAAGTACGACA T G AAA GGGGTCTGATTTCTACTTATCAA GTTCACAAAAATTGAGATCACATGGGTTTCTATACAAGGGGTTTCTTCCATGGCGACAATATAGAAAAATAGCAATCATAGCACTAGGAAAGCCGATAGCAAGATGGTACAGTTAGCAACGACTTCATAGTCCTCATAAAATGACCAGCTTCACTGCCTGAAATGATCATC ]
[+] EMBL BI306496             [TAGG AC  ACCCACGAAC GTTTAAATGCGGGTCTATCATTCC GTCATCATCAAAAGTTAACTTATGCA GGATTTCTCC  A TTACA AA GTTTA C TC  GGAAA ATAAT A GGGAAGTCCCACA T G AAA GGGGGCTGATTTCTACTTATCAA GTTCACAAAAATTGAAATCACAT GGTTTCTATACAA TGGTTTCTTCCAT GCCACAATTTAAAAAAATAGCAATCATAGCCCTAGGAAAGCCCATAGCAAAATTGTACAGTTAGCAACCACTTCATAGTCCTCATAAAATGACCAGCTTCACTGCCTGAAATGATCATCA]
[+] EMBL CB967345             [TAGG AC  ACCAACGAAC GTTTAAATGCGGGTCTATCATTCC GTCATCATCAAGAGTTAACTTATGCA GGATTTCTCC  A TTACA AA GTATA C TC  GGAAG ATAAT A GGGAAGTACGACA T G AAA GTGGTCTGATTTCTACTTATCAA GTTCACAAAAATGGAGATCACAT GGTTTCTATACAA GGGTTTCTTCCAT GCGACAATATAGAAAAATAGCAATCATAGCACTAGGAAAGCCGATAGCAAGATGGTACAGTTAGCAACGACTTCATAGTCCTCATAAAATGACCAGCTTCACTGCCTGAAATGATCATC ]
[+] EMBL BU673540             [TAGG AC  ACCAACGAAC GTTTAAATGCGGGTCTATCATTCC GTCATCATCAAGAGTTAACTTATGCA GGATTTCTCC  A TTACA AA GTATA C TC  GGAAG ATAAT A GGGAAGTACGACA T G AAA GTGGTCTGATTTCTACTTATCAA GTTCACAAAAATTGAGATCACAT GGTTTCTATACAA GGGTTTCTTCCAT GCGACAATATAGAAAAATAGCAATCATAGCACTAGGAAAGCCGATAGCAAGATTGTACAGTTAGCAACGACTTCATAGTCCTCATAAAATGACCAGCTTCACTGCCTGAAATGATCATC ]
[+] EMBL CB966262             [TAGG AC  ACCAACGAAC GTTTAAATGCGGGTCTATCATTCC GTCATCATCAAGAGTTAACTTATGCA GGATTTCTCC  A TTACA AA GTATA C TC  GGAAG ATAAT A GGGAAGTACGACA T G AAA GTGGTCTGATTTCTACTTATCAA GTTCACAAAAATTGAGATCACAT GGTTTCTATACAA GGGTTTCTTCCAT GCGACAATATAGAAAAATAGCAATCATAGCACTAGGAAAGCCGATAGCAAGATTGTACAGTTAGCAACGACTTCATAGTCCTCATAAAATGACCAGCTTCACTGCCTGAAATGATCATC ]
[+] EMBL BU673215             [TAGG AC  ACCAACGAAC GTTTAAATGCGGGTCTATCATTCC GTCATCATCAAGAGTTAACTTATGCACGGATTTCTCCCNA TTACA AA GTATA CNTC  GGAAG ATAATCA GGGAAGTACGACA T GCCAA GTGGTC                                                                                                                                                                                              ]
[+] EMBL BU673320             [   G AC  ACCAACGAAC GTTTAAATGCGGGTCTATCATTCCGGTCATCATCAAGAGTTAACTTATGCA GGATTTCTCC  A TTACA AA GTATA C TC  GGAAG ATAAT A GGGAAGTACGACA TGG AAAGGTGGTCTGATTTCTACTTATCAAGGTTCACAAAAATGGAGATCACATGGGTTTCTATACAAGGGGTTTCTTCCATGGCGACAATATta                                                                                                            ]
[+] EMBL CB967316             [                                 TCTATCATTCC GTCATCATCAAGAGTTAACTTATGCA GGATTTCTCC  A TTACA AA GTATA C TCN GGAAGAATAAT A GGGAAGTACGACAGT G AAA GTGGTCg                                                                                                                                                                                             ]


>consensus_14342#1 TAGGACACCAACGAACGTTTAAATGCGGGTCTATCATTCCGTCATCATCAAGAGTTAACT TATGCAGGATTTCTCCATTACAAAGTATACTCGGAAGATAATAGGGAAGTACGACATGAA AGTGGTCTGATTTCTACTTATCAAGTTCACAAAAATTGAGATCACATGGTTTCTATACAA GGGTTTCTTCCATGCGACAATATAGAAAAATAGCAATCATAGCACTAGGAAAGCCGATAG CAAGATTGTACAGTTAGCAACGACTTCATAGTCCTCATAAAATGACCAGCTTCACTGCCT GAAATGATCATCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14342#0      TTTTTTTTTTTTTTTTTTTTTTGTTTAAATGCGGGTCTATCATTCCGTCATCATCAAGAG 60
consensus_14342#1      ------TAGGACACCAACGAACGTTTAAATGCGGGTCTATCATTCCGTCATCATCAAGAG 54
                             *               **************************************

consensus_14342#0      TTAACTTATGCAGGATTTCTCCATTACAAAGTATACTCGGAAGATAATAGGGAAGTACGA 120
consensus_14342#1      TTAACTTATGCAGGATTTCTCCATTACAAAGTATACTCGGAAGATAATAGGGAAGTACGA 114
                       ************************************************************

consensus_14342#0      CATGAAAGTGGTCTGATTTCTACTTATCAAGTTCACAAAAATTGAGATCACATGGTTTCT 180
consensus_14342#1      CATGAAAGTGGTCTGATTTCTACTTATCAAGTTCACAAAAATTGAGATCACATGGTTTCT 174
                       ************************************************************

consensus_14342#0      ATACAATGGTTTCTTCCATGCGACAATATAGAAAAATAGCAATCATAGCACTAGGAAAGC 240
consensus_14342#1      ATACAAGGGTTTCTTCCATGCGACAATATAGAAAAATAGCAATCATAGCACTAGGAAAGC 234
                       ****** *****************************************************

consensus_14342#0      CGATAGCAAGATTGTACAGTTAGCAACGACTTCATAGTCCTCATAAAATGACCAGCTTCA 300
consensus_14342#1      CGATAGCAAGATTGTACAGTTAGCAACGACTTCATAGTCCTCATAAAATGACCAGCTTCA 294
                       ************************************************************

consensus_14342#0      CTGCCTGAAATGATCATCATTGCCACGAGAATTCCTCCATTGCTCCGATAGCTCCTCCCT 360
consensus_14342#1      CTGCCTGAAATGATCATCA----------------------------------------- 313
                       *******************                                         

consensus_14342#0      CACTTCTTTAGCTTTGGACGATAGATTCTCAAGAGACTTGTTGGTCCTCACAGCAAATCT 420
consensus_14342#1      ------------------------------------------------------------
                                                                                   

consensus_14342#0      CTGGAAGGTACGGTTGTTGGCGAGCCCCTCGACGATGAACTCGTTGACGACGTAGCTGAG 480
consensus_14342#1      ------------------------------------------------------------
                                                                                   

consensus_14342#0      CACCCTCCCGAACAGGTTCCCGCCGCCGGCCATGGCGAAGAGCAGGAGGAAGCTTCCAGA 540
consensus_14342#1      ------------------------------------------------------------
                                                                                   

consensus_14342#0      GAGAAGGCGGGGGTGGGAGGGGATTTTGCTATTATTAACCGGAGCGGGCGCTTGCCCCCC 600
consensus_14342#1      ------------------------------------------------------------
                                                                                   

consensus_14342#0      TTG 603
consensus_14342#1      ---
                          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)