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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14356#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1513 fasta sequence
[CTCCTCCTTCCCCTCTCCGCTCGCCTCCGCGATTCCCTTCCCATTTCGCCGCCGATGAAGGGCGGCGGGGGCGCGGCGGCGGCGTCGGCGGCGCCGGGGGACTACGTCTACTTCAAGTCCGTCGTCCCGCTCCACAAGATCTCGATTGGACCGAAATTATGGAGGTACTATGATTTTGGACCAAAGACTGTTCCACCTCTTGTCTGCATCCCAGGAATTGCAGGAACGGCTGATGTGTACTACAAACAGATCATGTCTCTCTCTATGAAGGGTTATCGAGTGATGTCAATTGATGTTCCTCAAGTTTGGAATCACCAGGAATGGATTCATTCATTTGAAAAATTTTTGGACTCCATGAATATCCATCATGTTCATATTTATGGTACATCTCTTGGTGGATTTCTTGCACAAATATTTGCTCAACACCGTCCAAGGAGAGTAAAGTCCTTGGTCCTATCAAATACTTTTCTTGAGACACATAAGTTTGCTGCTGCTACGCCATGGTCTCCTGTTGTTAATTGGACCCCTTCTTTTTTGCTGAAGCGGTACCTATTGACAGGAATCCGAGATGGCCCCCATGAACCGTTTATTGCAGACTCAGTGGATTTTGTTGTGAGTCAGGTTGAGACGCTGTCAAGAGATGATCTCTCATCAAGGTTGATGTTAAATGTTAATGTTGCATCAGTTGGATCATTAATGCTACCTGATTCACTCATCACTATAATGGATACAAACGACTATTCCGCTGTTCCTCAGCAGTTAAAGGACCAAGTGAATGAAAGGTACCCAGGTGCAAGGCGTGCAGTACTAAAGACGGGTGGTGATTTCCCCTTCCTGTCACGTCCTGATGAGGTTAATTTGTACCTTCAGCTACATTTGAGACGAGTTGGAGTAGAACCTAGACCAGATCTGGTCCAAGGTTTCACACGTAATGGCAGTGCTGGGAGCTCAAAGGACCAAAAAGATGGTGGAAACAATTTTGACAATCATCCTGGAGATAATGGTGGCCCTGGTTCAGGGGGTCATGATCATGAGACACAGAATTCTGGATCAGAATCACATGATTCTGATGAATCAATACCAACGAGCACAATGCTTGCCAATACCATTCTAGGTACGGTTAGCTCAACCCTGCAAGCTTCACTATGTGTGCTCTT-GATAC-ATCATTACTATGAGTCTG-CTT-TGTATATTTC-GTCGAGACA-GCCATTGGATGTATGAAGTAGGGAATCACCCCTTTTGCCC-CCATGTAGAGCTCGCTTTGTAGAATATCATCGTGGTACG-AGTGTCATAGCTTCTTTGGAGTGGGTTCTTACTTCGTTGCTGCCAACGGGAAAGGCACATCAACAACCAGGA-AAA-CAACTTCTGTATGTTTGTATATTAGCTCTTGTTTCT-TTATCAATCCTTCTTTTTGTGTTTCTAGGCCTGTAAATTGAATTTGATCTGCCTGAGACATGAATATGATTGCTTAATTTTCTTGTAGTTGCACCATAAAAAGTTGCGTACAAAAAAAAAA]
[+] EMBL AK067281 [CTCCTCCTTCCCCTCTCCGCTCGCCTCCGCGATTCCCTTCCCATTTCGCCGCCGATGAAGGGCGGCGGGGGCGCGGCGGCGGCGTCGGCGGCGCCGGGGGACTACGTCTACTTCAAGTCCGTCGTCCCGCTCCACAAGATCTCGATTGGACCGAAATTATGGAGGTACTATGATTTTGGACCAAAGACTGTTCCACCTCTTGTCTGCATCCAAGGAATTGCAGGAACGGCTGATGTGTACTACAAACAGATCATGTCTCTCTCTATGAAGGGTTATCGAGTGATGTCAATTGATGTTCCTCAAGTTTGGAATCACCAGGAATGGATTCATTCATTTGAAAAATTTTTGGACTCCATGAATATCCATCATGTTCATATTTATGGTACATCTCTTGGTGGATTTCTTGCACAAATATTTGCTCAACACCGTCCAAGGAGAGTAAAGTCCTTGGTCCTATCAAATACTTTTCTTGAGACACATAAGTTTGCTGCTGCTACGCCATGGTCTCCTGTTGTTAATTGGACCCCTTCTTTTTTGCTGAAGCGGTACCTATTGACAGGAATCCGAGATGGCCCCCATGAACCGTTTATTGCAGACTCAGTGGATTTTGTTGTGAGTCAGGTTGAGACGCTGTCAAGAGATGATCTCTCATCAAGGTTGATGTTAAATGTTAATGTTGCATCAGTTGGATCATTAATGCTACCTGATTCACTCATCACTATAATGGATACAAACGACTATTCCGCTGTTCCTCAGCAGTTAAAGGACCAAGTGAATGAAAGGTACCCAGGTGCAAGGCGTGCAGTACTAAAGACGGGTGGTGATTTCCCCTTCCTGTCACGTCCTGATGAGGTTAATTTGTACCTTCAGCTACATTTGAGACGAGTTGGAGTAGAACCTAGACCAGATCTGGTCCAAGGTTTCACACGTAATGGCAGTGCTGGGAGCTCAAAGGACCAAAAAGATGGTGGAAACAATTTTGACAATCATCCTGGAGATAATGGTGGCCCTGGTTCAGGGGGTCATGATCATGAGACACAGAATTCTGGATCAGAATCACATGATTCTGATGAATCAATACCAACGAGCACAATGCTTGCCAATACCATTCTAGGTACGGTTAGCTCAACCCTGCAAGCTTCACTATGTGTGCTCTT GATAC ATCATTACTATGAGTCTG CTT TGTATATTTC GTCGAGACA GCCATTGGATGTATGAAGTAGGGAATCACCCCTTTTGCCC CCATGTAGAGCTCGCTTTGTAGAATATCATCGTGGTACG AGTGTCATAGCTTCTTTGGAGTGGGTTCTTACTTCGTTGCTGCCAACGGGAAAGGCACATCAACAACCAGGA AAA CAACTTCTGTATGTTTGTATATTAGCTCTTGTTTCT TTATCAATCCTTCTTTTTGTGTTTCTAGGCCTGTAAATTGAATTTGATCTGCCTGAGACATGAATATGATTGCTTAATTTTCTTGTAGTTGCACCATAAAAAGTTGCGTA ]
[+] EMBL CB653357 [ CCTTCCCATTTCGCCGCCGATGAAGGGCGGCGGGGGCGCGGCGGCGGCGTCGGCGGCGCCGGGGGACTACGTCTACTTCAAGTCCGTCGTCCCGCTCCACAAGATCTCGATTGGACCGAAATTATGGAGGTACTATGATTTTGGACCAAAGACTGTTCCACCTCTTGTCTGCATCCCAGGAATTGCAGGAACGGCTGATGTGTACTACAAACAGATCATGTCTCTCTCTATGAAGGGTTATCGAGTGATGTCAATTGATGTTCCTCAAGTTTGGAATCACCAGGAATGGATTCATTCATTTGAAAAATTTTTGGACTCCATGAATATCCATCATGTTCATATTTATGGTACATCTCTTGGTGGATTTCTTGCACAAATATTTGCTCAACACCGTCCAAGGAGAGTAAAGTCCTTGGTCCTATCAAATACTTTTCTTGAGACACATAAGTTTGCTGCTGCTACGCCATGGTCTCCTGTTGTTAATTGGACCCCTTCTTTTTTGCTGAAGCGGTACCTATTGACAGGAATCCGAGATGGCCCCCATGAACCGTTTATTGCAGACTCAGTGGATTTTGTTGTGAGTCAGGTTGAGACGCTGTCAAGAGATGATCTCTCATCAAGGTTGATGTTAAATGTTAATGTTGCATCAGTTGGATCATTAATGCTACCTGATTCACTCATCACTATAATGGATACAAACGACTATTCCGCTGTTCCTCAGCAGTTAAAGGACCAAGTGAATGAAAGGTACCCAGGTGCAAGGCGTGCAGTACTAAAGACGGGTGGTGATTTCCCCTTCCTGTCAC ]
[+] EMBL CB653395 [ CCTTCCCCTTTCGCCGCCGATGAAGGGCGGCGGGGGCGCGGCGGCGGCGTCTGCGGCGCCGGGGGACTACGTCTACTTCAAGTCCGTCGTCCCGCTCCACAAGATCTCGATTGGACCGAAATTATGGAGGTACTATGATTTTGGACCAAAGACTGTTCCACCTCTTGTCTGCATCCCAGGAATTGCAGGAACGGCTGATGTGTACTACAAACAGATCATGTCTCTCTCTATGAAGGGTTATCGAGTGATGTCAATTGATGTTCCTCAAGTTTGGAATCACCAGGAATGGATTCATTCATTTGAAAAATTTTTGGACTCCATGAATATCCATCATGTTCATATTTATGGTACATCTCTTGGTGGATTTCTTGCACAAATATTTGCTCAACACCGTCCAAGGAGAGTAAAGTCCTTGGTCCTATCAAATACTTTTCTTGAGACACATAAGTTTGCTGCTGCTACGCCATGGTCTCCTGTTGTTAATTGGACCCCTTCTTTTTTGCTGAAGCGGTACCTATTGACAGGAATCCGAGATGGCCCCCATGAACCGTTTATTGCAGACTCAGTGGATTTTGTTGTGAGTCAGGTTGAGACGCTGTCAAGAGATGATCTCTCATCAAGGTTGA ]
[+] EMBL AU077454 [ GGACCGAAATTATGGAGGTACTATGATTTTGGACCAAAGACTGTTCCACCTCTTGTCTGCATCCCAGGAATTGCAGGAACGGCTGATGTGTACTACAAACAGATCATGTCTCTCTCTATGAAGGGTTATCGAGTGATGTCAATTGATGTTCCTCAAGTTTGGAATCACCAGGAATGGATTCATTCATTTGAAAAATTTTTGGACTCCATGAATATCCATCATGTTCATATTTATGGTACATCTCTTGGTGGATTTCTTGCACAAATATTTGCTCAACACCGTCCAAGGAGAGTAAAGTCCTTGGTCCTATCAAATACTTTTCTTGAGACACATAAGTTTGCTGCTGCTACGCCATGGNCTCCTGTTGTTAATTGGACCCCTTCTTTTTTGCTGAAGCGGTACCTATTGACAGGAATCCGAGATGGCCCCCATGAACCGTTTATTGCAGACTCAGTGGATTTTGTTGTGAGTCAGGTTGAGACGCTGTCAAGAGATGATCTCTCATCAAGGTT ]
[+] EMBL AU077453 [ GTGCAGTACTAAAGACGGGTGGTGATTTCCCCTTCCTGTCACGTCCTGATGAGGTTAATTTGTACCTTCAGCTACATTTGAGACGAGTTGGAGTAGAACCTAGACCAGATCTGGTCCAAGGTTTCACACGTAATGGCAGTGCTGGGAGCTCAAAGGACCAAAAAGATGGTGGAAACAATTTTGACAATCATCCTGGAGATAATGGTGGCCCTGGTTCAGGGGGTCATGATCATGAGACACAGAATTCTGGATCAGAATCACATGATTCTGATGAATCAATACCAACGAGCACAATGCTTGCCAATACCATTCTAGGTACGGTTAGCTCAACCCTGCAAGCTTCACTATGTGTGCTCTT GATAC ATCATTACTATGAGTCTG CTT TGTATATTTC GTCGAGACA GCCATTGGATGTATGAAGTAGGGAATCACCCCTTTTGCCC CCATGTAGAGCTCGCTTTGTAGAATATCATCGTGGTACG AGTGTCATAGCTTCTTTGGAGTGGGTTCTTACTTCGTTGCTGCCAACGGGAAAGGCACATCAACAACCAGGA AAA CAACTTCTGTATGTTTGTATATTAGCTCTTGTTTCT TTATCAATCCTTCTTTTTGTGTTTCTAGGCCTGTAAATTGAATTTGATCTGCCTGAGACATGAATATGATTGCTTAATTTTCTTGTAGTTGCACCATAAAAAGTTGCGTACAAAAAAAAAA]
[+] EMBL BI811406 [ CTCTTGGATACAATCAGTACTATGAGTCCGCCTTGTGTATATTTCGGTCGAGACACGCCCTTGGATGTATGAAATAGGGAATCACCCCGTTGGCCCACCCTGTAGAGCTCGCTTTGTAGAATATCATCGTGGTACG AGTGTCATAGCTTCTTTGGAGTGGGTTCTTACTTCGTTGCTGCCCACGGGAAAGGCACATCAACAACCAGGAGAAACCAACTTCTGTATGTTTGTATATTAGCTCTTGTTTCTGTTATCCATCCTTCTTTTTGTGTTTCTAGGCCTGTAAATTGAATTTGATCT ]
[+] EMBL D42836 [ ACCCCTTNTGCCC CCATGTAGAGCTCGCTNTGTAGAATATCACCGTGGTACGAAGTGTCATAGCTTCTTTGGAGTGGGTTCTTACNACGTTGCTGCCAACGGGAAAGGCACATCAACAACCAGGA AAA CAACTTCTGTATGTTTGTATATTAGCTCTTGTTTCT TTATCAATCCTTCTTTTTGTGTTTCTAGGCCTGTAAATTGAATTTGATCTGCCTGAGACATGAATATGATTGCTTAAT ]
consensusID : consensus_14356#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 799 fasta sequence
[TGTTGTGAGTCAGGTTGAGACGCTGTCAAGAGATGATCTCTCATCAAGGTTGATGTTAAATGTTAATGTTGCATCAGTTGGATCATTAATGCTACCTGATTCACTCATCACTATAATGGATACAAACGACTATTCCGCTGTTCCTCAGCAGTTAAAGGACCAAGTGAATGAAAGGTACCCAGGTGCAAGGCGTGCAGTACTAAAGACGGGTGGTGATTTCCCCTTCCTGTCACGTCCTGATGAGGTTAATTTGTACCTTCAGCTACATTTGAGACGAGTTGGAGTAGAACCTAGACCAGATCTGGTCCAAGGTTTCACACGTAATGGCAGTGCTGGGAGCTCAAAGGACCAAAAAGATGGTGGAAACAATTTTGACAATCATCCTGGAGATAATGGTGGCCCTGGTTCAGGGGGTCATGATCATGAGACACAGAATTCTGGATCAGAATCACATGATTCTGATGAATCAATACCAACGAGCACAATGCTTGCCAATACCATTCTAGAGCTCGCTTTGTAGAATATCATCGTGGTACGAGTGTCATAGCTTCTTTGGAGTGGGTTCTTACTTCGTTGCTGCCAACGGGAAAGGCACATCAACAACCAGGAAAACAACTTCTGTATGTTTGTATATTAGCTCTTGTTTCTTTATCAATCCTTCTTTTTGTGTTTCTAGGCCTGTAAATTGAATTTGATCTGCCTGAGACATGAATATGATTGCTTAATTTTCTTGTAGTTGCACCATAAAAAGTTGCGGACAGTTTCATGATTTCATCCAACTTATTTTTCAAAAAAAGGA]
[-] EMBL CB653358 [TGTTGTGAGTCAGGTTGAGACGCTGTCAAGAGATGATCTCTCATCAAGGTTGATGTTAAATGTTAATGTTGCATCAGTTGGATCATTAATGCTACCTGATTCACTCATCACTATAATGGATACAAACGACTATTCCGCTGTTCCTCAGCAGTTAAAGGACCAAGTGAATGAAAGGTACCCAGGTGCAAGGCGTGCAGTACTAAAGACGGGTGGTGATTTCCCCTTCCTGTCACGTCCTGATGAGGTTAATTTGTACCTTCAGCTACATTTGAGACGAGTTGGAGTAGAACCTAGACCAGATCTGGTCCAAGGTTTCACACGTAATGGCAGTGCTGGGAGCTCAAAGGACCAAAAAGATGGTGGAAACAATTTTGACAATCATCCTGGAGATAATGGTGGCCCTGGTTCAGGGGGTCATGATCATGAGACACAGAATTCTGGATCAGAATCACATGATTCTGATGAATCAATACCAACGAGCACAATGCTTGCCAATACCATTCTAGAGCTCGCTTTGTAGAATATCATCGTGGTACGAGTGTCATAGCTTCTTTGGAGTGGGTTCTTACTTCGTTGCTGCCAACGGGAAAGGCACATCAACAACCAGGAAAACAACTTCTGTATGTTTGTATATTAGCTCTTGTTTCTTTATCAATCCTTCTTTTTGTGTTTCTAGGCCTGTAAATTGAATTTGATCTGCCTGAGACATGAATATGATTGCTTAATTTTCTTGTAGTTGCACCATAAAAAGTTGCGGACAGTTTCATGATTTCATCCAACTTATTTTT ]
[-] EMBL CB653396 [ AGAGATGATCTCTCATCAAGGTTGATGTTAAATGTTAATGTTGCATCAGTTGGATCATTAATGCTACGTGATTCACTCATCACTATAATGGATACAAACGACTATTCCGCTGTTCCTCAGCAGTTAAAGGACCAAGTGAATGAAAGGTACCCAGGTGCAAGGCGTGCAGTACTAAAGACGGGTGGTGATTTCCCCTTCCTGTCACGTCCTGATGAGGTTAATTTGTACCTTCAGCTACATTTGAGACGAGTTGGAGTAGAACCTAGACCAGATCTGGTCCAAGGTTTCACACGTAATGGCAGTGCTGGGAGCTCAAAGGACCAAAAAGATGGTGGAAACAATTTTGACAATCATCCTGGAGATAATGGTGGCCCTGGTTCAGGGGGTCATGATCATGAGACACAGAATTCTGGATCAGAATCACATGATTCTGATGAATCAATACCAACGAGCACAATGCTTGCCAATACCATTCTAGAGCTCGCTTTGTAGAATATCATCGTGGTACGAGTGTCATAGCTTCTTTGGAGTGGGTTCTTACTTCGTTGCTGCCAACGGGAAAGGCACATCAACAACCAGGAAAACAACTTCTGTATGTTTGTATATTAGCTCTTGTTTCTTTATCAATCCTTCTTTTTGTGTTTCTAGGCCTGTAAATTGAATTTGATCTGCCTGAGACATGAATATGATTGCTTAATTTTCTTGTAGTTGCACCATAAAAAGTTGGGGACAGTTTCATGATTTCATCCAACTTATTTTTCAAAAAAAGGA]
[+] EMBL CA882910 [ TACATTTGAGACGAGTTGGAGTAGAACCTAGACCAGATCTGGTCCAAGGTTTCACACGTAATGGCAGTGCTGGGAGCTCAAAGGACCAAAAAGATGGTGGAAACAATTTTGACAATCATCCTGGAGATAATGGTGGCCCTGGTTCAGGGGGTCATGATCATGAGACACAGAATTCTGGATCAGAATCACATGATTCTGATGAATCAATACCAACGAGTACAATGCTTGCCAATAC ]
[+] EMBL CA764665 [ ATCAACAACCAGGAAAACAACTTCTGTATGTTTGTATATTAGCTCTTGTTTCTTTATCAATCCTTCTTTTTGTGTTTCTAGGCCTGTAAATTGAATTTGATCTGCCTGAGACATGAATATGATTGCTTAATTTTCTTGTAGTTGC ]
consensusID : consensus_14356#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 793 fasta sequence
[CCCCCCTCCGCTCGCCTCCGCGATTCCCTTCCCATTTCGCCGCCGATGAAGGGCGGCGGGGGCGCGGCGGCGGCGTCGGCGGCGCCGGGGGACTACGTCTACTTCAAGTCCGTCGTC-CCGCTCCACAAGATCTCGATTGGACCGAAATTATGGAGGTACTATGATTTTGGACCAAAGACTGTTCCACCTCTTGTCTGCATCCCAGGAATTGCAGGAACGGCTGATGTGTACTACAAACAGATCATGTCTCTCTCTATGAAGGGTTATCGAGTGATGTCAATTGATGTTCCTCAAGTTTGGAATCACCAGGAATGGATTCATTCATTTGAAAAATTTTTGGACTCCATGAATATCCATCATGTTCATATTTATGGTACATCTCTTGGTGGATTTCTTGCACAAATATTTGCTCAACACCGTCCAAGGAGAGTAAAGTCCTTGGTCCTATCAAATACTTTTCTTGAGACACATAAGTTTGC-TGCTGCTACGCCAT-GGTCTCCTGTTGTTAATTGGACCCCTTCTTTTTTGCTGAAGCGGTACCTATTGACAGGAATCCGAGATGGCCCCCATGTAGAGCTCGCTTTGTAGAATATCATCGTGGTACGAGTGTCATAGCTTCTTTGGAGTGGGTTCTTACTTCGTTGCTGCCAACGGGAAAGGCACATCAACAACCAGGAAAACAACTTCTGTATGTTTGTATATTAGCTCTTGTTTCTTTATCAATCCTTCTTTTTGTGTTTCTAGGCCTGTAAATTGAATTTGATCTGCCTGAGACATGAATATGATTGCTTTA]
[+] EMBL CB685058 [CCCCCCTCCGCTCGCCTCCGCGATTCCCTTCCCATTTCGCCGCCGATGAAGGGCGGCGGGGGCGCGGCGGCGGCGTCGGCGGCGCCGGGGGACTACGTCTACTTCAAGTCCGTCGTC CCGCTCCACAAGATCTCGATTGGACCGAAATTATGGAGGTACTATGATTTTGGACCAAAGACTGTTCCACCTCTTGTCTGCATCCCAGGAATTGCAGGAACGGCTGATGTGTACTACAAACAGATCATGTCTCTCTCTATGAAGGGTTATCGAGTGATGTCAATTGATGTTCCTCAAGTTTGGAATCACCAGGAATGGATTCATTCATTTGAAAAATTTTTGGACTCCATGAATATCCATCATGTTCATATTTATGGTACATCTCTTGGTGGATTTCTTGCACAAATATTTGCTCAACACCGTCCAAGGAGAGTAAAGTCCTTGGTCCTATCAAATACTTTTCTTGAGACACATAAGTTTGC TGCTGCTACGCCAT GGTCTCCTGTTGTTAATTGGACCCCTTCTTTTTTGCTGAAGCGGTACCTATTGACAGGAATCCGAGATGGCCCCCATGTAGAGCTCGCTTTGTAGAATATCATCGTGGTACGAGTGTCATAGCTTCTTTGGAGTGGGTTCTTACTTCGTTGCTGCCAACGGGAAAGGCACATCAACAACCAGGAAAACAACTTCTGTATGTTTGTATATTAGCTCTTGTTTCTTTATCAATCCTTCTTTTTGTGTTTCTAGGCCTGTAAATTGAATTTGATCTGCCTGAGACATGAATA ]
[+] EMBL C26051 [ ccggcCGTCTCCTCC TCC CCCTCTCCGCTCCACAAGATCTCGATTGGACCGAAATTATGGAGGTACTATGATTTTGGACCAAAGACTGTTCCACCTCTTGTCTGCATCCCAGGAATTGCAGGAACGGCTGATGTGTACTACAAACAGATCATGTCTCTCTCTATGAAGGGTTATCGAGTGATGTCAATTGATGTTCCTCAAGTTTGGAATCACCAGGAATGGATTCATTCATTTGAAAAATTTTTGGACTCCATGAATATCCATCATGTTCATATTTATGGTACATCTCTTGGTGGATTTCTTGCACAAATATTTGCTCAACANCGTCCAAGGAGAGTAAAGTCCTTGGTCCTATCAAATACTTTTCTTGAGACACATAAGTNTGCTTGCTGCTACGGCATGGGTCTNCTGTTGTTAATTGGACC ]
[-] EMBL CB685059 [ TC CCGCTCCACAAGATCTCGATTGGGCCGAAATTATGGAGGTACTATGATTTTGGACCAAAGACTGTTCCACCTCTTGTCTGCATCCCAGGAATTGCAGGAACGGCTGATGTGTACTACAAACAGATCATGTCTCTCTTTATGAAGGGTTATCGAGTGATGTCAATTGATGTTCCTCAAGTTTGGAATCACCAGGAATGGATTCATTCATTTGAAAAATTTTTGGACTCCATGAATATCCATCATGTTCATATTTATGGTACATCTCTTGGTGGATTTCTTGCACAAATATTTGCTCAACCCCGTCCAAGGAGAGTAAAGTCCTTGGTCCTATCAAATACTTTTCTTGAGACACATAAGTTTGC TGCTGCTACGCCAT GGTCTCCTGTTGTTAATTGGACCCCTTCTTTTTTGCTGAAGCGGTACCTATTGACAGGAATCCGAGATGGCCCCCATGTAGAGCTCGCTTTGTAGAATATCATCGTGGTACGAGTGTCATAGCTTCTTTGGAGTGGGTTCTTACTTCGTTGCTGCCAACGGGAAAGGCACATCAACAACCAGGAAAACAACTTCTGTATGTTTGTATATTAGCTCTTGTTTCTTTATCAATCCTTCTTTTTGTGTTTTTAGGCCTGTAAATTGAATTTGATCTGCCTGAGACATGAATATGATTGCTTTA]
consensusID : consensus_14356#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 551 fasta sequence
[AGACAAGGGGTATGGGGGAACCAATTTTGGCAATCATCCTGAAGATAATGGTGGCCCTGGTTCAGGGGGTCATGATCATGAGACACAGAATTCTGGATCAGAATCACATGATTGTGATGAATCAATACCAACGAGCACAATGCTTGCCAATACCATTCTAGGTACGGTTAGCTCAACCCTGCAAGCTTCACTATGTGTGCTCTTGATACATCATTACTATGAGTCTGCTTTGTATATTTCGTCGAGACAGCCATTGGATGTATGAAGTAGGGAATCACCCCTTTTGCCCCCATGTAGAGCTCGCTTTGTAGAATATCATCGTGGTACGAGTGTCATAGCTTCTTTGGAGTGGGTTCTTACTTCGTTGCTGCCAACGGGAAAGGCACATCAACAACCAGGAAAACAACTTCTGTATGTTAAGAATATTAGCTCTTGTTTCTTTATCAATCCTTCTTTTTGTGTTTCTAGGCCTGTAAATTGAATTTGATCTGCCTGAGACATGAATATGATTGCTTAATTTTCTTGTAGTTGCCCCATAAAAAAAAAAAAAA]
[-] EMBL CA759236 [AGACAAGGGGTATGGGGGAACCAATTTTGGCAATCATCCTGAAGATAATGGTGGCCCTGGTTCAGGGGGTCATGATCATGAGACACAGAATTCTGGATCAGAATCACATGATTGTGATGAATCAATACCAACGAGCACAATGCTTGCCAATACCATTCTAGGTACGGTTAGCTCAACCCTGCAAGCTTCACTATGTGTGCTCTTGATACATCATTACTATGAGTCTGCTTTGTATATTTCGTCGAGACAGCCATTGGATGTATGAAGTAGGGAATCACCCCTTTTGCCCCCATGTAGAGCTCGCTTTGTAGAATATCATCGTGGTACGAGTGTCATAGCTTCTTTGGAGTGGGTTCTTACTTCGTTGCTGCCAACGGGAAAGGCACATCAACAACCAGGAAAACAACTTCTGTATGTTAAGAATATTAGCTCTTGTTTCTTTATCAATCCTTCTTTTTGTGTTTCTAGGCCTGTAAATTGAATTTGATCTGCCTGAGACATGAATATGATTGCTTAATTTTCTTGTAGTTGCCCCATAAAAAAAAAAAAAA]
consensusID : consensus_14356#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 352 fasta sequence
[ACCAAAGACTGTTCCACCTCTTGTCTGCATCCCAGGAATTGCAGGAACGCGCTGATGTGTACTACACACAGATCATGTCTCTCTCTATGAAGGTTCCTAGTATCTGCCTTGAGACTAATTTTTTCATACCTGAACTGGGTTTGGGTTTCAGGTTCATGCATACCTACCACAATACCGAAAAGTTTATTATTTGCATTTGTAGGTTGTAGGGCCAAGGTTTTTTTAAAAAAAAACTACAAAAAGCATGGTCAAGGGTCTGTCCTGCGTCCTTGGCTGTTCTCAATCATCTACCAAACAAAAATTCGCTCTCACACAACAGTTTATCTTGACTCTACACCTGAGATCATGAGAC]
[+] EMBL D42452 [ACCAAAGACTGTTCCACCTCTTGTCTGCATCCCAGGAATTGCAGGAACGCGCTGATGTGTACTACACACAGATCATGTCTCTCTCTATGAAGGTTCCTAGTATCTGCCTTGAGACTAATTTTTTCATACCTGAACTGGGTTTGGGTTTCAGGTTCATGCATACCTACCACAATACCGAAAAGTTTATTATTTGCATTTGTAGGTTGTAGGGCCAAGGTTTTTTTAAAAAAAAACTACAAAAAGCATGGTCAAGGGTCTGTCCTGCGTCCTTGGCTGTTCTCAATCATCTACCAAACAAAAATTCGCTCTCACACAACAGTTTATCTTGACTCTACACCTGAGATCATGAGAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14356#1 ------------------------------------------------------------
consensus_14356#3 ------------------------------------------------------------
consensus_14356#0 CTCCTCCTTCCCCTCTCCGCTCGCCTCCGCGATTCCCTTCCCATTTCGCCGCCGATGAAG 60
consensus_14356#2 ------------------------------------------------------------
consensus_14356#4 ------------------------------------------------------------
consensus_14356#1 ------------------------------------------------------------
consensus_14356#3 ------------------------------------------------------------
consensus_14356#0 GGCGGCGGGGGCGCGGCGGCGGCGTCGGCGGCGCCGGGGGACTACGTCTACTTCAAGTCC 120
consensus_14356#2 ------------------------------------------------------------
consensus_14356#4 ------------------------------------------------------------
consensus_14356#1 ------------------------------------------------------------
consensus_14356#3 ------------------------------------------------------------
consensus_14356#0 GTCGTCCCGCTCCACAAGATCTCGATTGGACCGAAATTATGGAGGTACTATGATTTTGGA 180
consensus_14356#2 ------------------------------------------------------------
consensus_14356#4 ------------------------------------------------------------
consensus_14356#1 ------------------------------------------------------------
consensus_14356#3 ------------------------------------------------------------
consensus_14356#0 CCAAAGACTGTTCCACCTCTTGTCTGCATCCCAGGAATTGCAGGAACGGCTGATGTGTAC 240
consensus_14356#2 ------------------------------------------------------------
consensus_14356#4 ------------------------------------------------------------
consensus_14356#1 ------------------------------------------------------------
consensus_14356#3 ------------------------------------------------------------
consensus_14356#0 TACAAACAGATCATGTCTCTCTCTATGAAGGGTTATCGAGTGATGTCAATTGATGTTCCT 300
consensus_14356#2 ------------------------------------------------------------
consensus_14356#4 ------------------------------------------------------------
consensus_14356#1 ------------------------------------------------------------
consensus_14356#3 ------------------------------------------------------------
consensus_14356#0 CAAGTTTGGAATCACCAGGAATGGATTCATTCATTTGAAAAATTTTTGGACTCCATGAAT 360
consensus_14356#2 ------------------------------------------------------------
consensus_14356#4 ------------------------------------------------------------
consensus_14356#1 ------------------------------------------------------------
consensus_14356#3 ------------------------------------------------------------
consensus_14356#0 ATCCATCATGTTCATATTTATGGTACATCTCTTGGTGGATTTCTTGCACAAATATTTGCT 420
consensus_14356#2 ------------------------------------------------------------
consensus_14356#4 ------------------------------------------------------------
consensus_14356#1 ------------------------------------------------------------
consensus_14356#3 ------------------------------------------------------------
consensus_14356#0 CAACACCGTCCAAGGAGAGTAAAGTCCTTGGTCCTATCAAATACTTTTCTTGAGACACAT 480
consensus_14356#2 ------------------------------------------------------------
consensus_14356#4 ------------------------------------------------------------
consensus_14356#1 ------------------------------------------------------------
consensus_14356#3 ------------------------------------------------------------
consensus_14356#0 AAGTTTGCTGCTGCTACGCCATGGTCTCCTGTTGTTAATTGGACCCCTTCTTTTTTGCTG 540
consensus_14356#2 ------------------------------------------------------------
consensus_14356#4 ------------------------------------------------------------
consensus_14356#1 ------------------------------------------------------------
consensus_14356#3 ------------------------------------------------------------
consensus_14356#0 AAGCGGTACCTATTGACAGGAATCCGAGATGGCCCCCATGAACCGTTTATTGCAGACTCA 600
consensus_14356#2 ------------------------------------------CCCCCCTCCGCTCGCCTC 18
consensus_14356#4 ------------------------------------------------------------
consensus_14356#1 --------TGTTGTGAGTCAGGTTGAGACGCTGTCAAGAGATGATCTCTCATCAAGGTTG 52
consensus_14356#3 ------------------------------------------------------------
consensus_14356#0 GTGGATTTTGTTGTGAGTCAGGTTGAGACGCTGTCAAGAGATGATCTCTCATCAAGGTTG 660
consensus_14356#2 CGCGATTCCCTTCCCATTTCGCCGCCGATGAAGGGCGGCGGGGGCGCGGCGGCGGCGTCG 78
consensus_14356#4 ------------------------------------------------------------
consensus_14356#1 ATGTTAAATGTTAATGTTGCATCAGTTGGATCATTAATGCTACCTGATTCACTCATCACT 112
consensus_14356#3 ------------------------------------------------------------
consensus_14356#0 ATGTTAAATGTTAATGTTGCATCAGTTGGATCATTAATGCTACCTGATTCACTCATCACT 720
consensus_14356#2 GCGGCGCCGGGGGACTACGTCTACTTCAAGTCCGTCGTCCCGCTCCACAAGATCTCGATT 138
consensus_14356#4 ------------------------------------------------------------
consensus_14356#1 ATAATGGATACAAACGACTATTCCGCTGTTCC-TCAGCAGTTAAAGGACCAAGTGAATGA 171
consensus_14356#3 ------------------------------------------------------------
consensus_14356#0 ATAATGGATACAAACGACTATTCCGCTGTTCC-TCAGCAGTTAAAGGACCAAGTGAATGA 779
consensus_14356#2 GGACCGAAATTATGGAGGTACTATGATTTTGGACCAAAGACTGTTCCACCTCTTGTCTGC 198
consensus_14356#4 --------------------------------ACCAAAGACTGTTCCACCTCTTGTCTGC 28
consensus_14356#1 AAGGTACCCAGGTGCAAGGCGTGC-AGTACTAAAGACGGGTGGTGATTTCCCCTTCCTGT 230
consensus_14356#3 ------------------------------AGACAAGGGGTATGGGGGAACCAATTTTGG 30
consensus_14356#0 AAGGTACCCAGGTGCAAGGCGTGC-AGTACTAAAGACGGGTGGTGATTTCCCCTTCCTGT 838
consensus_14356#2 ATCCCAGGAATTGCAGGAACGGCT-GATGTGTACTACAAACAGATCATGTCTCTCTCTAT 257
consensus_14356#4 ATCCCAGGAATTGCAGGAACGCGCTGATGTGTACTACACACAGATCATGTCTCTCTCTAT 88
* * * *
consensus_14356#1 CACG--TCCTGATGAG-GTTAATTTGTACCTTCAGCTACATTTGAGACGAGTTGGAGTAG 287
consensus_14356#3 CA-A--TCATCCTGAA-GATAATG-GTGGCCCTGGTTCAGGGGGTCATGATCATGAG--- 82
consensus_14356#0 CACG--TCCTGATGAG-GTTAATTTGTACCTTCAGCTACATTTGAGACGAGTTGGAGTAG 895
consensus_14356#2 GAAG--GGTTATCGAGTGATGTCAATTGATGTTCCTCAAGTTTGGAATCACCAGGAATGG 315
consensus_14356#4 GAAGGTTCCTAGTATCTGCCTTGAGACTAATTTTTTCATACCTGAACTGGGTTTGGGTTT 148
* * * * *
consensus_14356#1 A-ACCTAGACCAGATCTGGTCCAAGGTTTCACA--CGT--AATGG--CAGTGCTGG-GAG 339
consensus_14356#3 --ACACAGAAT---TCTGGATCAGAATCACATGATTGT--GATGAATCAATACCAACGAG 135
consensus_14356#0 A-ACCTAGACCAGATCTGGTCCAAGGTTTCACA--CGT--AATGG--CAGTGCTGG-GAG 947
consensus_14356#2 ATTCATTCATTTGAAAAATTTTTGGACTCCATGAATATCCATCATGTTCATATTTA-TGG 374
consensus_14356#4 CAGGTTCATGCATACCTACCACAATACCGAAAA---GTTTATTAT--TTGCATTTGTAGG 203
* * *
consensus_14356#1 CTCAAAGG--ACCAAAAAGATGGTGGAAACAATTTTGACAATCATCCTGGAGATAATGGT 397
consensus_14356#3 CACAATGCTTGCCAATACCATTCTAGGTACGGTTAGCTCAACCCTGCAAGCTTCACTATG 195
consensus_14356#0 CTCAAAGG--ACCAAAAAGATGGTGGAAACAATTTTGACAATCATCCTGGAGATAATGGT 1005
consensus_14356#2 TACATCTCTTGGTGGATTTCTTGCACAAATATTTGCTCAACACCGTCCAAGGAGAGTAAA 434
consensus_14356#4 TTGTAGGG--CCAAGGTTTTTTTAAAAAAAAACTACAAAAAGCATGGTCAAGGGTCTGTC 261
* * * * * *
consensus_14356#1 GGCCCTGGTTCAGG-GGGTCATGATCATGAGACACAGAATTCTGGATCAGAATCACATGA 456
consensus_14356#3 TGTGCT--CTTGAT-ACATCATTACTATGAGTCTGCTTTGTATATTTCGTCGAGACAGCC 252
consensus_14356#0 GGCCCTGGTTCAGG-GGGTCATGATCATGAGACACAGAATTCTGGATCAGAATCACATGA 1064
consensus_14356#2 GTCCTTGGTCCTATCAAATACTTTTCTTGAGACACATAAGTTTGCTGCTGCTACGCCATG 494
consensus_14356#4 CTGCGTCCTTGGCTGTTCTCAATCATCTACCAAACAAAAATTCGCTCTCACACAACAGT- 320
* * * * *
consensus_14356#1 TTCTGATGAATCAATACCAACGAGCACAATGCTTGCCAATA------------------- 497
consensus_14356#3 ATTGGATGTATGAA-GTAGGGAATCACCCCTTTTGCC----------------------- 288
consensus_14356#0 TTCTGATGAATCAATACCAACGAGCACAATGCTTGCCAATACCATTCTAGGTACGGTTAG 1124
consensus_14356#2 GTCTCCTGTTGTTA-ATTGGACCCCTTCTTTTTTGCTGAAGCG----------------- 536
consensus_14356#4 TTATCTTGACTCTACACCTGAGATCATGAGAC---------------------------- 352
* ** * *
consensus_14356#1 ------------------------------------------------------------
consensus_14356#3 ------------------------------------------------------------
consensus_14356#0 CTCAACCCTGCAAGCTTCACTATGTGTGCTCTTGATACATCATTACTATGAGTCTGCTTT 1184
consensus_14356#2 ------------------------------------------------------------
consensus_14356#4 ------------------------------------------------------------
consensus_14356#1 ---------------------------------------------------------CCA 500
consensus_14356#3 ---------------------------------------------------------CCC 291
consensus_14356#0 GTATATTTCGTCGAGACAGCCATTGGATGTATGAAGTAGGGAATCACCCCTTTTGCCCCC 1244
consensus_14356#2 ----------------------------GTACCTATTGACAGGAATCCGAGATGGCCCCC 568
consensus_14356#4 ------------------------------------------------------------
consensus_14356#1 TTCTAGAGCTCGCTTTGTAGAATATCATCGTGGTACGAGTGTCATAGCTTCTTTGGAGTG 560
consensus_14356#3 ATGTAGAGCTCGCTTTGTAGAATATCATCGTGGTACGAGTGTCATAGCTTCTTTGGAGTG 351
consensus_14356#0 ATGTAGAGCTCGCTTTGTAGAATATCATCGTGGTACGAGTGTCATAGCTTCTTTGGAGTG 1304
consensus_14356#2 ATGTAGAGCTCGCTTTGTAGAATATCATCGTGGTACGAGTGTCATAGCTTCTTTGGAGTG 628
consensus_14356#4 ------------------------------------------------------------
consensus_14356#1 GGTTCTTACTTCGTTGCTGCCAACGGGAAAGGCACATCAACAACCAGGAAAACAACTTCT 620
consensus_14356#3 GGTTCTTACTTCGTTGCTGCCAACGGGAAAGGCACATCAACAACCAGGAAAACAACTTCT 411
consensus_14356#0 GGTTCTTACTTCGTTGCTGCCAACGGGAAAGGCACATCAACAACCAGGAAAACAACTTCT 1364
consensus_14356#2 GGTTCTTACTTCGTTGCTGCCAACGGGAAAGGCACATCAACAACCAGGAAAACAACTTCT 688
consensus_14356#4 ------------------------------------------------------------
consensus_14356#1 GTATGTTT-GTATATTAGCTCTTGTTTCTTTATCAATCCTTCTTTTTGTGTTTCTAGGCC 679
consensus_14356#3 GTATGTTAAGAATATTAGCTCTTGTTTCTTTATCAATCCTTCTTTTTGTGTTTCTAGGCC 471
consensus_14356#0 GTATGTTT-GTATATTAGCTCTTGTTTCTTTATCAATCCTTCTTTTTGTGTTTCTAGGCC 1423
consensus_14356#2 GTATGTTT-GTATATTAGCTCTTGTTTCTTTATCAATCCTTCTTTTTGTGTTTCTAGGCC 747
consensus_14356#4 ------------------------------------------------------------
consensus_14356#1 TGTAAATTGAATTTGATCTGCCTGAGACATGAATATGATTGCTTAATTTTCTTGTAGTTG 739
consensus_14356#3 TGTAAATTGAATTTGATCTGCCTGAGACATGAATATGATTGCTTAATTTTCTTGTAGTTG 531
consensus_14356#0 TGTAAATTGAATTTGATCTGCCTGAGACATGAATATGATTGCTTAATTTTCTTGTAGTTG 1483
consensus_14356#2 TGTAAATTGAATTTGATCTGCCTGAGACATGAATATGATTGCTTTA-------------- 793
consensus_14356#4 ------------------------------------------------------------
consensus_14356#1 CACCATAAAAAGTTGCGGACAGTTTCATGATTTCATCCAACTTATTTTTCAAAAAAAGGA 799
consensus_14356#3 CCCCATAAAAAAAAAAAAAA---------------------------------------- 551
consensus_14356#0 CACCATAAAAAGTTGCGTACAAAAAAAAAA------------------------------ 1513
consensus_14356#2 ------------------------------------------------------------
consensus_14356#4 ------------------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||