These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14368#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1744 fasta sequence [TGCTCCCGCCTCGCGTCCTCTCCGCCCCGCTCCGCTCGCCGGCGAGCCGCCGCCGCCGCCCCAGCCCCACACCCTCGTCGGCGCGTCGCCTACCGGTGGCCATCTTCGCCCACTCCCGCGCCTTGTCCTGTAGCCGAAGTGCGGCAATGATTGACTGCCCGCGGCTGCTCCTGGCGGCCGCGCGCGCCTCTCCGTACCCCAGCTCCGCCGCTCACCGGAGGGTCTGCACCGCCGGAGTCCCTCCCGTACCCGTATATTGCCGTGTCAGCCACCGCCGCAGGTCCTCCGTTCCTGTGCAATCTGCATCCTCTGGGTCAGGAAGCCAATCAAGCGTTGCAGAAAGTTCGGAGGCTACCGAATGGGCCATGCAGGATTTCTACGCTTTGCGGAAGGATGTCGAGCTGGCTGTAGCGCGCGTCAGTGAAGTCAGGCAGTCTGCTGGTTTGGATCAGCTTGAGGAGGAAATCGCTTCGCTCGAGAAGAAATCTGCAGATAGTTCCTTGTGGGATGATCCTT-CCAA-GGCACAGGAGATAC-TTGTTGCTCTGACAG-AGGTCAAAGACAGAGTCAAGCTTCTCAACGATTTGAAG-TTGCAGGTTG-AAGAAGCTGAGACCATTGTAAAGCTTACTGAGGAGTTAGATTCCATAGATACTGGCCTTCTTGAAGAAGCCTCAAAGATCATAAAGGCATTAAACAAAGCACTAGATAACTTTGAGATGACACAGCTTCTTTCTGGACCTTATGACAAGGAAGGTGCTGTGATTAATATTACTGCAGGTGCTGGTGGCACCGA-TGCCCAGGATTGGGC-TGACATGTTACTGAGGATGTATGTTAGGTGGGGAGAGAAGCAGCGGTACAAGACAAGAGTGGTTGAGAAATCCCCTGGTGAAGAAGCTGGAATAAAATCAGCTACCATTGAATTAGAAGGAAGATATGCCTATGGGTATCTCTCTGGGGAGAAAGGGACACACAGAATTGTTCGTCAGTCCCCATTCAATGCTAAAGGGCTTAGGCAGACAAGCTTTGCTGGTGTTGAAGTAATGCCTCTACTGCCAGAAGAGTCCATGGATGTAGAAATACCCGAAGAGGATCTGGAGATAAGCTTCACTAGAGCAGGCGGCAAAGGAGGCCAGAATGTGAACAAGGTGGAGACGGCTGTTCGCATGGTCCATATACCCACGGGCATCGCTGTTCGTTGCACAGAGGAGAGGAGCCA-GTTGGCCAACAAGATAAAGGCCCTGAGCCGGCTGAAGGCGAAGCTGCTGGTGATCGCCGAGGAGCAGCGGGCGTCGGAGATCAAGCAGATCCGCGGCGACGCGGTGAAGGCGGAGTGGGGGCAGCAGATCCGCAACTACGTCTTCCACCCCTACAAGCTCGTCAAGGACGTCCGCACCGCCTGCGAGACGTCGGACATCACCGGCGTCATGGACGGCGAGCTGGACACCTTCATCAGAGCCTACCTCAAGTACAAGCTCTCTGCCGCTGCTGAGGAGCAAAGCGT-CAAGTGACAGATTTGCATCCAGTGTCCGATGCAACAACCGTGCTTGTGCTATAGGCGCAGAATTTTGATGCAGAGCAAGAACCCCATCACGTAGTAAGCTTGTAAGAATAGCCTGAAATTAACCGTGCAGAATTCGGTTTGCTTGGCTCTACTAAGCACCCAAATTTTATTTTGGGGCTTCATGTATTAGTGGATATATTAATTTCATTTCTACCCAATATATATAAGCCTCTCACCTGCCAAACG] [+] EMBL CA754180 [TGCTCCCGCCTCGCGTCCTCTCCGCCCCGCTCCGCTCGCCGGCGAGCCGCCGCCGCCGCCCCAGCCCCACACCCTCGTCGGCGCGTCGCCTACCGGTGGCCATCTTCGCCCACTCCCGCGCCTTGTCCTGTAGCTGAAGTGCGGCAATGATTGACTGCCCGCGGCTGCTCCTGGCGGCCGCGCGCGCCTCTCCGTACCCCAGCTCCGCCGCTCACCGGAGGGTCTGCACCGCCGGAGTCCCTCCCGTACCCGTCTACTGCCGTGTCAGCCACCGCCGCAGGTCCTCCGTTCCTGTGCAATCTGCATCCTCTGGGTCAGGAGGCCAATCGAGCGTTGCAGAAAGTTCGGAGGCTACCGAATGGGCCATGCAGGATTTCTACGCTTTGCGGAAGGATGTCGAGCTGGCTCTAGCGCGTGTCGGTGAAGTCAGGCAGTCTGCTGGTTTGGATCAGCTTGAGGAGGA ] [+] EMBL AK065606 [ CTCGCCTCCTCTCCGCCCCGCTCCGCTCGCCGGCGAGCCGCCGCCGCCGCCCCAGCCCCACACCCTCGTCGGCGCGTCGCCTACCGGTGGCCATCTTCGCCCACTCCCGCTCCATGTCCTGTAGCCGAAGTGCGGCAATGATTGACTGCCCGCGGCTGCTCCTGGCGGCCGCGCGCGCCTCTCCGTACCCCAGCTCCGCCGCTCACCGGAGGGTCTGCACCGCCGGAGTCCCTCCCGTACCCGTATATTGCCGTGTCAGCCACCGCCGCAGGTCCTCCGTTCCTGTGCAATCTGCATCCTCTGGGTCAGGAAGCCAATCAAGCGTTGCAGAAAGTTCGGAGGCTACCGAATGGGCCATGCAGGATTTCTACGCTTTGCGGAAGGATGTCGAGCTGGCTGTAGCGCGCGTCAGTGAAGTCAGGCAGTCTGCTGGTTTGGATCAGCTTGAGGAGGAAATCGCTTCGCTCGAGAAGAAATCTGCAGATAGTTCCTTGTGGGATGATCCTT CCAA GGCACAGGAGGTAC TTGTTGCTCTGACAG AGGTCAAAGACAGAGTCAAGCTTCTCAACGATTTGAAG TTGCAGGTTG AAGAAGCTGAGACCATTGTAAAGCTTACTGAGGAGTTAGATTCCATAGATACTGGCCTTCTTGAAGAAGCCTCAAAGATCATAAAGGCATTAAACAAAGCACTAGATAACTTTGAGATGACACAGCTTCTTTCTGGACCTTATGACAAGGAAGGTGCTGTGATTAATATTACTGCAGGTGCTGGTGGCACCGA TGCCCAGGATTGGGC TGACATGTTACTGAGGATGTATGTTAGGTGGGGAGAGAAGCAGCGGTACAAGACAAGAGTGGTTGAGAAATCCCCTGGTGAAGAAGCTGGAATAAAATCAGCTACCATTGAATTAGAAGGAAGATATGCCTATGGGTATCTCTCTGGGGAGAAAGGGACACACAGAATTGTTCGTCAGTCCCCATTCAATGCTAAAGGGCTTAGGCAGACAAGCTTTGCTGGTGTTGAAGTAATGCCTCTACTGCCAGAAGAGTCCATGGATGTAGAAATACCCGAAGAGGATCTGGAGATAAGCTTCACTAGAGCAGGCGGCAAAGGAGGCCAGAATGTGAACAAGGTGGAGACGGCTGTTCGCATGGTCCATATACCCACGGGCATCGCTGTTCGTTGCACAGAGGAGAGGAGCCA GTTGGCCAACAAGATAAAGGCCCTGAGCCGGCTGAAGGCGAAGCTGCTGGTGATCGCCGAGGAGCAGCGGGCGTCGGAGATCAAGCAGATCCGCGGCGACGCGGTGAAGGCGGAGTGGGGGCAGCAGATCCGCAACTACGTCTTCCACCCCTACAAGCTCGTCAAGGACGTCCGCACCGCCTGCGAGACGTCGGACATCACCGGCGTCATGGACGGCGAGCTGGACACCTTCATCAGAGCCTACCTCAAGTACAAGCTCTCTGCCGCTGCTGAGGAGCAAAGCGT CAAGTGACAGATTTGCATCCAGTGTCCGATGCAACAACCGTGCTTGTGCTATAGGCGCAGAATTTTGATGCAGAGCAAGAACCCCATCACGTAGTAAGCTTGTAAGAATAGCCTGAAATTAACCGTGCAGAATTCGGTTTGCTTGGCTCTACTAAGCACCCAAATTTTATTTTGGGGCTTCATGTATTAGTGGATATATTAATTTCATTTCTACCCAATATATATAAGCCTCTCACCTGCC ] [+] EMBL CB657758 [ CCTGTAGCCGAAGTGCGGCAATGATTGACTGCCCGCGGCTGCTCCTGGCGGCCGCGCGCGCCTCTCCGTACCCCAGCTCCGCCGCTCACCGGAGGGTCTGCACCGCCGGAGTCCCTCCCGTACCCGTATATTGCCGTGTCAGCCACCGCCGCAGGTCCTCCGTTCCTGTGCAATCTGCATCCTCTGGGTCAGGAAGCCAATCAAGCGTTGCAGAAAGTTCGGAGGCTACCGAATGGGCCATGCAGGATTTCTACGCTTTGCGGAAGGATGTCGAGCTGGCTGTAGCGCGCGTCAGTGAAGTCAGGCAGTCTGCTGGTTTGGATCAGCTTGAGGAGGAAATCGCTTCGCTCGAGAAGAAATCTGCAGATAGTTCCTTGTGGGATGATCCTT CCAA GGCACAGGAGATAC TTGTTGCTCTGACAG AGGTCAAAGACAGAGTCAAGCTTCTCAACGATTTGAAG TTGCAGGTTG AAGAAGCTGAGACCATTGTAAAGCTTACTGAGGAGTTAGATTCCATAGATACTGGCCTTCTTGAAGAAGCCTCAAAGATCATAAAGGCATTAAACAAAGCACTAGATAACTTTGAGATGACACAGCTTCTTTCTGGACCTTATGACAAGGAAGGTGCTGTGATTAATATTACTGCAGGTGCTGGTGGCACCGA TGCCCAGGATTGGGC TGACATGTTACTGAGGATGTATGTTANGTGGGGAGAGAAGCAGCGGTACAAGACAAGAGTGGTTGAGAAATCCCCTGGTGAAGAAGCTGGAATAAA ] [-] EMBL BI807243 [ ctCGAGGATACT CTAAAGGGCG GCGCG CTCT CGTACCCCAG T CG CG TCACCGGAGGGTCTG ACCG CGGAGTCCCTCCCGTA CCGTATATTGCCGTGTCAGCCACCG CG AGGTCCTCCGTTCCTGTGCAATCTGCATCCTCTGGGTCAGGAAGCCAATCAAGCGTTGCAGAAAGTTCGGAGGCTACCGAATGGGCCATGCAGGATTTCTACGCTTTGCGGAAGGATGTCGAGCTGGCTGTAGCGCGCGTCAGTGAAGTCAGGCAGTCTGCTGGTTTGGATCAGCTTGAGGAGGAAATCGCTTCGCTCGAGAAGAAATCTGCAGATAGTTCCTTGTGGGATGATCCTTACCAAGGGCACAGGAGATACTTTGTTGCTCTGACAGNAGGTCANNGACAGAGTCAAGCTTCTCAACGATTTGAAGTTTGCAGGTTGAAAGAAGCTGAGACCATTGTAAAGCTTACTGAGGAGTTAGATTCCATAGATACTGGCCTTCTTGAAGAAGCCTCAAAGATCATAAAGGCAT ] [+] EMBL OSS12202A [ GACCATTGTAAAGCTTACTGAGGAGTTAGATTCCATAGATACTGGCCTTCTTGAAGAAGCCTCAAACATCATAAAGGCATTAAACAAAGCACTAGATAACTTTGAGATGACACAGCTTCTTTCTGGACCTTATGACAAGGAAGGTGCTGTGATTAATATTACTGCAGGTGCTGGTGGCACCGANTGCCCAGGATTGGGC TGACATGTTACTGAGGATGTATGTTAGGTGGGGAGAGAAGCAGCGGTACAAGACAAGAGTGGTTGAGAAATCCCCTGGTGAAGAAGCTGGAATAAAATCAGCTACCATTGAATTAGAAGGAAGATATGCCTATGGGTATCTCTCTGG ] [+] EMBL OSS12275A [ GACCATTGTAAAGCTTACTGAGGAGTTAGATTCCATAGATACTGGCCTTCTTGAAGAAGCCTCAAACATCATAAAGGCATTAAACAAAGCACTAGATAACTTTGAGATGACACAGCTTCTTTCTGGACCTTATGACAAGGAAGGTGCTGTGATTAATATTACTGCAGGTGCTGGTGGCACCGA TGCCCAGGATTGGGCTTGACATGTTACTGAGGATGTATGTTAGGTGGGGAGAGAAGCAGCGGTACAAGACAAGAGTGGTTGAGAAATCCCCTGGTGAAGAAGCTGGATTAAAATCAGCTACCATTGAATTAGAAGG AGGTATTCCTATGG ] [-] EMBL CB657759 [ ATGCCTATGGGTATCTCTCTGGGGAGAAAGGGACACACAGAATTGTTCGTCAGTCCCCATTCAATGCTAAAGGGCTTAGGCAGACAAGCTTTGCTGGTGTTGAAGTAATGCCTCTACTGCCAGAAGAGTCCATGGATGTAGAAATACCCGAAGAGGATCTGGAGATAAGCTTCACTAGAGCAGGCGGCAAAGGAGGCCAGAATGTGAACAAGGTGGAGACGGCTGTTCGCATGGTCCATATACCCACGGGCATCGCTGTTCGTTGCACAGAGGAGAGGAGCCA GTTGGCCAACAAGATAAAGGCCCTGAGCCGGCTGAAGGCGAAGCTGCTGGTGATCGCCGAGGAGCAGCGGGCGTCGGAGATCAAGCAGATCCGCGGCGACGCGGTGAAGGCGGAGTGGGGGCAGCAGATCCGCAACTACGTCTTCCACCCCTACAAGCTCGTCAAGGACGTCCGCACCGCCTGCGAGACGTCGGACATCACCGGCGTCATGGACGGCGAGCTGGACACCTTCATCAGAGCCTACCTCAAGTACAAGCTCTCTGCCGCTGCTGAGGAGCAAAGCGT CAAGTGACAGATTTGCATCCAGTGTCCGATGCAACAACCGTGCTTGTGCTATAGGCGCAGAATTTTGATGCAGAGCAAGAACCCCATCACGTAGTAAGCTTGTAAGAATAGCCTGAAATTAACCGTGCAGAATTCGGTTTGCTTGGCTCTACTAAGCACCCAAATTTTATTTTGGGGCTTCATGTATTAGTGGATATATTAATTTCATTT ] [+] EMBL AU088682 [ ACTGCCAGAAGAGTCCATGGATGTAGAAATACCCGAAGAGGATCTGGAGATAA CTTCACTAGAGCAGNCGGCAAAGGAGGCCAGAATGTGAACAAGGTGGAGACGGCTGTTCGCATGGTCCATATACCCACGGGCATCGCTGTTCGTTGCACAGAGGAGAGGAGCCA GTTGGCCAACAAGATAAAGGCCCTGAGCCGGCTGAAGGCGAAGCTGCTGGTGATCGCCGAGGAGCAGCGGGCGTCGGAGATCAAGCAGATCCGCGGCGACGCGGTGAAGGCGGAGTGGGGGCAGCAGATCCGCAA TACGTCTTCCACCCCTACAAGCTCGTCAAGGACGTCCGCACCGCCTGCGAGACGTCGGACATCACCGGCGTCATGGACGGCGAGCTGGACACCTTCATCAGAGCCTACCTCAAGTACAAGCTCTCTGCCGCTGCTGAGGAGCAAAGCGT CAAGTGACAGATTTGCATCCAGTGTCCGATGCAACAACCGTGCTTGTGCTATAGGCGCAGAATTTTGATGCAGAGCAAGAACCCCATCACGTAGTAAGCTTGTAAGAATAGCCTGAAATTAACCGTGCAGAATTCGGTTTGCTTGGCTCTACTAAGCACCCAAATTTTATTTTGGGGCTTCATGTATTAGTGGATATATTAATTTCATTTCTACCCAATATATATAAGCCTCTCAaaaaaaaa ] [+] EMBL CB679512 [ ACAGAGGAGAGGAGCCACGTTGGCCAACAAGATAAAGGCCCTGAGCCGGCTGAAGGCGAAGCTGCTGGTGATCGCCGAGGAGCAGCGGGCGTCGGAGATCAAGCAGATCCGCGGCGACGCGGTGAAGGCGGAGTGGGGGCAGCAGATCCGCAACTACGTCTTCCACCCCTACAAGCTCGTCAAGGACGTCCGCACCGCCTGCGAGACGTCGGACATCACCGGCGTCATGGACGGCGAGCTGGACACCTTCATCAGAGCCTACCTCAAGTACAAGCTCTCTGCCGCTGCTGAGGAGCAAAGCGT CAAGTGACAGATTTGCATCCAGTGTCCGATGCAACAACCGTGCTTGTGCTATAGGCGCAGAATTTTGATGCAGAGCAAGAACCCCATCACGTAGTAAGCTTGTAAGAATAGCCTGAAATTAACCGTGCAGAATTCGGTTTGCTTGGCTCTACTAAGCACCCAAATTTTATTTTGGGGCTTCATGTATTAGTGGATATATTAATTTCATTTCTACCCAATATATATAAGCCTCTCACCTGCCTGACG] [+] EMBL AU096121 [ GATCGCCGAGGAGCAGC GGCGTCGGA ATCAAGCAGATCCGCGGCGACGCGTTGAAGCCGGA TGGGGGCAGCAGATCCGCAA TACGTCTTCCACCCNTACAAGCTCGTCAAGGACGTCCGCACCGCTTGCGAGACGTCGGACATCACCGGCGTCATGGACGGCGAGCTGGACA CTTCATCAGAGCCTACCTCAAGTACAAGCTNTCTGCCGCTGCTGAGGAGCAAAGCGTCCAAGTGACAGATTTGCATCCAGTGTCCGATGCAACAACCGTGCTTGTGCTATAGGCGCAGAATTTTGATGCAGAGCAAGAACCCCATCACGTAGTAAGCTTGTAAGAATAGCCTGAAATTAACCGTGCAGAATTCGGTTTGCTTGGCTCTACTAAGCACCCAAATTTTATTTTGGGGCTTCATGTATTAGTGGATATATTAATTTCATTTCTACCCAATATATATAAGCCTCTCAaaaaaaaa ] [+] EMBL CF196752 [ AGCAGATCCGCGGCGACGCGGTGAAGGCGGAGTGGGGGCAGCAGATCCGCAACTACGTCTTCCACCCCTACAAGCTCGTCAAGGACGTCCGCACCGCCTGCGAGACGTCGGACATCACCGGCGTCATGGACGGCGAGCTGGACACCTTCATCAGAGCCTACCTCAAGTACAAGCTCTCTGCCGCTGCTGAGGAGCAAAGCGT CAAGTGACAGATTTGCATCCAGTGTCCGATGCAACAACCGTGCTTGTGCTATAGGCGCAGAATTTTGATGCAGAGCAAGAACCCCATCACGTAGTAAGCTTGTAAGAATAGCCTGAAATTAACCGTGCAGAATTCGGTTTGCTTGGCTCTACTAAGCACCCAAATTTTATTTTGGGGCTTCATGTATTAGTGGATATATTAATTTCATTTCTACCCAAaaaaaaa ] consensusID : consensus_14368#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 700 fasta sequence [GAAGAGGATCTGGAGATAAGCTTCACTAGAGCAGGCGGCAAAGGAGGCCAGAATGTGAACAAGGTGGAGACGGCTGTTCGCATGGTCCATATTCCCACGGGCATCGCTGTTCGTTGCACAGAGGAGAGGAGCCAGTTGGCCAACAAGATAAAGGCCCTGAGCCGGCTGAAGGCGAAGCTGCTGGTGATCGCCGAGGAGCAGCGCGCGTCGGAGATCAAGCAGATCCGCGGCGACGCGGTGAAGGCGGAGTGGGGGCAGCAGATCCGCAACTACGTCTTCCACCCCTACAAGCTCGTCAAGGACGTCCGCACCGCCTGCGAGACGTCGGACATCACCGGCGTCATGGACGGCGAGCTGGACACCTTCATCAGAGCCTACCTCAAGTACAAGCTCTCTGCCGCTGCTGAGGAGCAAAGCGTCAAGTGACAGATTTGCATCCAGTGTCCGATGCAACAAGCCAACAACCAATGCTTGTGCTATAGGCGCAGAATTTTGACGCAGAGCAAGAACCCCATCACGTAGTAAGATTGTAAGAATAGCCTGGAATTAACCGTGTGCTTGTGCTATAGGTGCAGAATTCGTTTTGCTTCTCAACTAAGCACCCAAAATTTATTTTGGGGCTTCATGTATTAGTGGATATATTAATTTCATTTCTACCCAATATATATAAGCCTCTCACCTGCCTGAAAAAAAAAAAAAA] [-] EMBL CB622916 [GAAGAGGATCTGGAGATAAGCTTCACTAGAGCAGGCGGCAAAGGAGGCCAGAATGTGAACAAGGTGGAGACGGCTGTTCGCATGGTCCATATTCCCACGGGCATCGCTGTTCGTTGCACAGAGGAGAGGAGCCAGTTGGCCAACAAGATAAAGGCCCTGAGCCGGCTGAAGGCGAAGCTGCTGGTGATCGCCGAGGAGCAGCGCGCGTCGGAGATCAAGCAGATCCGCGGCGACGCGGTGAAGGCGGAGTGGGGGCAGCAGATCCGCAACTACGTCTTCCACCCCTACAAGCTCGTCAAGGACGTCCGCACCGCCTGCGAGACGTCGGACATCACCGGCGTCATGGACGGCGAGCTGGACACCTTCATCAGAGCCTACCTCAAGTACAAGCTCTCTGCCGCTGCTGAGGAGCAAAGCGTCAAGTGACAGATTTGCATCCAGTGTCCGATGCAACAAGCCAACAACCAATGCTTGTGCTATAGGCGCAGAATTTTGACGCAGAGCAAGAACCCCATCACGTAGTAAGATTGTAAGAATAGCCTGGAATTAACCGTGTGCTTGTGCTATAGGTGCAGAATTCGTTTTGCTTCTCAACTAAGCACCCAAAATTTATTTTGGGGCTTCATGTATTAGTGGATATATTAATTTCATTTCTACCCAATATATAT ] [-] EMBL CA763264 [ AGGCGGCAAAGGAGGCCAAAATGTGAACAAGGTGGAGACGGCTGTTCGCATGGTCCATATTCCCACGGGGATCGCTGTTCGTTGCACAGAGGAGAGGAGCCAGTTGGCCAACAAGATAAAGGCCCTGAGCCGGCTGAAGGCGAAGCTGCTGGTGATCCCCGAGGAGCAGCGCGCGTCGGAGATCAAGCAGATCCCCGGCGACGCGGTGAAGGCGGAGCGGGGGCAGCAGATCCGCAANTACGTCTTCCACCCCTACAAGCTCGTCAAGGACGTCCGCACCGCCTGCGAGACGTCGGACATCACCGGCGTCATGGACGGCGAGCTGGACACCTTCATCAGAGCCTACCTCAAGTACAAGCTCTCTGCCGCTGCTGAGGAGCAAAGCGTCAAGTGACAGATTTGCATCCAGTGTCCGATGCAACAAGCCAACAACCAATGCTTGTGCTATAGGCGCAGAATTTTGACGCAGAGCAAGAACCCCATCACGTAGTAAGATTGTAAGAATAGCCTGGAATTAACCGTGTGCTTGTGCTATAGGTGCAGAATTCGTTTTGCTTTTCAACTAAGCACCCAAAATTTATTTTGGGGCTTCATGTATTAGTGGATATATTAATTTCATTTCTACCCAATATATATAAGCCTCTCACCTGCCTGAAAAAAAAAAAAAA] [+] EMBL CB096625 [ CTGTTCGCATGGTCCATATTCCCACGGGCATCGCTGTTCGTTGCACAGAGGAGAGGAGCCAGTTGGCCAACAAGATAAAGGCCCTGAGCCGGCTGAAGGCGAAGCTGCTGGTGATCGCCGAGGAGCAGCGCGCGTCGGAGATCAAGCAGATCCGCGGCGACGCGGTGAAGGCGGAGTGGGGGCAGCAGATCCGCAACTACGTCTTCCACCCCTACAAGCTCGTCAAGGACGTCCGCACCGCCTGCGAGACGTCGGACATCACCGGCGTCATGGACGGCGAGCTGGACACCTTCATCAGAGCCTACCTCAAGTACAAGCTCTCTGCCGCTGCTGAGGAGCAAAGCGTCAAGTGACAGATTTGCATCCAGTGTCCGATGCAACAAGCCAACAACCAATGCTTGTGCTATAGGCGCAGAATTTTGACGCAGAGCAAGAACCCCATCACGTAGTAAGATTGTAAGAATAGCCTGGAATTAACCGTGTGCTTGTGCTATAGGTGCAGAATTCGTTTTGCTTCTCAACTAAGCACCCAAAATTTATTTTGGGGCTTCATGTATTAGTGGATATATTAATTTCATTTCTACCCAATATATATAAGCCTCTCACCTGCC ] consensusID : consensus_14368#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 660 fasta sequence [GCTCCTTCCCTTGTAGCTGAAGTGCGGTAATGATTGACTGCCCGCGGCTGCTCCTGGCGGCCGCGCGCGCCTCTCCGTACCCCCGCTCCGCCGCTCACCGGAGGGTCTGCACTGCCGGAGTCCCTCCCGTACCCGTTTATTGCCGTGTCAGCCGCCGCCGCAGGTCCTCCGTTCCTGTGCAATCTGCATCCTCTGGGTCAGGAGGCCAATCGAGCGTTGCAGAAAGTTCGGAGGCTACCGAATGGGCCATGCAGGATTTCTACGCTTTGCGGAAGGATGTCGAGCTGGCTCTAGCGCGTGTCGGTGAAGTCAGGCAGTCTGCTGGTTTGGATCAGCTTGAGGAGGAAATCGCTTCGCTCGAGAAGAAATCTGCAGATAGTTCCTTGTGGGATGATCCTTCCAAGGCACAAGAGATACTTGTTGCTCTGACAGAGGTCAAAGATAGAGTCAAGCTTCTCAACGATTTGAAGTCGCAGGTTTAACCAACTCGATATTCTTCTCCACCCATACTAGAGATGATACAGAATGATGTAGAATTCTAATTGTTATTATACTATAGCTATATATATTGAAATGATTGTTTAATACCTCCTATAGTAAATTAGTAATTCTCATTATTATAATGTGGATTTGCCGCGTTCATAAATGATAGGATACAAG] [+] EMBL CB622915 [GCTCCTTCCCTTGTAGCTGAAGTGCGGTAATGATTGACTGCCCGCGGCTGCTCCTGGCGGCCGCGCGCGCCTCTCCGTACCCCCGCTCCGCCGCTCACCGGAGGGTCTGCACTGCCGGAGTCCCTCCCGTACCCGTTTATTGCCGTGTCAGCCGCCGCCGCAGGTCCTCCGTTCCTGTGCAATCTGCATCCTCTGGGTCAGGAGGCCAATCGAGCGTTGCAGAAAGTTCGGAGGCTACCGAATGGGCCATGCAGGATTTCTACGCTTTGCGGAAGGATGTCGAGCTGGCTCTAGCGCGTGTCGGTGAAGTCAGGCAGTCTGCTGGTTTGGATCAGCTTGAGGAGGAAATCGCTTCGCTCGAGAAGAAATCTGCAGATAGTTCCTTGTGGGATGATCCTTCCAAGGCACAAGAGATACTTGTTGCTCTGACAGAGGTCAAAGATAGAGTCAAGCTTCTCAACGATTTGAAGTCGCAGGTTTAACCAACTCGATATTCTTCTCCACCCATACTAGAGATGATACAGAATGATGTAGAATTCTAATTGTTATTATACTATAGCTATATATATTGAAATGATTGTTTAATACCTCCTATAGTAAATTAGTAATTCTCATTATTATAATGTGGATTTGCCGCGTTCATAAATGATAGGATACAAG] consensusID : consensus_14368#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 256 fasta sequence [AGTGCCTTAATGATTGACTGCCCGCGGCTGCTCCTGGCGGCCGCGCGCGCCTCTCCGTACCCCAGCTCCGCCGCTCACCGGAGGGTCTGCACTGCCGGAGTCCCTCCCGTACCCGTTTATTGCCGTGTCAGCCGCCGCCGCAGGCTACCGAATGGGCCATGCAGGATTTCTACGCTTTGCGGAAGGATGTCGAGCTGGCTCTAGCGCGTGTCGGTGAAGTCAGGCAGTCTGCTGGTTTGGATCAGCTTGAGGAGGA] [+] EMBL CB618897 [AGTGCCTTAATGATTGACTGCCCGCGGCTGCTCCTGGCGGCCGCGCGCGCCTCTCCGTACCCCAGCTCCGCCGCTCACCGGAGGGTCTGCACTGCCGGAGTCCCTCCCGTACCCGTTTATTGCCGTGTCAGCCGCCGCCGCAGGCTACCGAATGGGCCATGCAGGATTTCTACGCTTTGCGGAAGGATGTCGAGCTGGCTCTAGCGCGTGTCGGTGAAGTCAGGCAGTCTGCTGGTTTGGATCAGCTTGAGGAGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14368#2 ------------------------------------------------------------ consensus_14368#3 ------------------------------------------------------------ consensus_14368#0 TGCTCCCGCCTCGCGTCCTCTCCGCCCCGCTCCGCTCGCCGGCGAGCCGCCGCCGCCGCC 60 consensus_14368#1 ------------------------------------------------------------ consensus_14368#2 ---------------------------------------------------------GCT 3 consensus_14368#3 ------------------------------------------------------------ consensus_14368#0 CCAGCCCCACACCCTCGTCGGCGCGTCGCCTACCGGTGGCCATCTTCGCCCACTCCCGCG 120 consensus_14368#1 ---------------------------------------------GAAGAGGATCTGGAG 15 consensus_14368#2 CCTTCCCTTGTAGCTGAAGTGCGGTAATGATTGACTGCCCGCGGCT--GCTCCTGGCGGC 61 consensus_14368#3 -----------------AGTGCCTTAATGATTGACTGCCCGCGGCT--GCTCCTGGCGGC 41 consensus_14368#0 CCTTGTCCTGTAGCCGAAGTGCGGCAATGATTGACTGCCCGCGGCT--GCTCCTGGCGGC 178 consensus_14368#1 ATAAGCTTCACTAGAGCAG-GCGGCAAAGGAGGCCAGAATGTGAACAAGGTGGAGACGGC 74 ** ** ** * * * * * * * * * **** consensus_14368#2 CGCGCGCGCCTCTCCGTACCCCC----GCTCCGCCGCTCACCGGA-GGGTCTGCACTGCC 116 consensus_14368#3 CGCGCGCGCCTCTCCGTACCCCA----GCTCCGCCGCTCACCGGA-GGGTCTGCACTGCC 96 consensus_14368#0 CGCGCGCGCCTCTCCGTACCCCA----GCTCCGCCGCTCACCGGA-GGGTCTGCACCGCC 233 consensus_14368#1 TGTTCGCATGG-TCCATATTCCCACGGGCATCGCTGTTCGTTGCACAGAGGAGAGGAGCC 133 * *** *** ** ** ** *** * ** * * * * *** consensus_14368#2 GG--AGTCCCTCCCGTACCCGTTTATTGCCGTGTCA-GCCGCCGCCGCAGGTCCTCCGTT 173 consensus_14368#3 GG--AGTCCCTCCCGTACCCGTTTATTGCCGTGTCA-GCCGCCGCCGCAGG--------- 144 consensus_14368#0 GG--AGTCCCTCCCGTACCCGTATATTGCCGTGTCA-GCCACCGCCGCAGGTCCTCCGTT 290 consensus_14368#1 AGTTGGCCAACAAGATAAAGGCCCTGAGCCGGCTGAAGGCGAAGCTGCTGGTGATC-GCC 192 * * * ** * **** * * * * ** ** ** consensus_14368#2 CCTGTGCAATCTGCATCCTCTGGGTCAGGAGGCCAATCGAGCGTTGCAGAAAGTTCGGAG 233 consensus_14368#3 ------------------------------------------------------------ consensus_14368#0 CCTGTGCAATCTGCATCCTCTGGGTCAGGAAGCCAATCAAGCGTTGCAGAAAGTTCGGAG 350 consensus_14368#1 GAGGAGCAGCGCGCGTCGG--AGATCAAGCAGATCCGCG-GCGACGCGGTGAAGGCGGAG 249 consensus_14368#2 GCTACCGAATGGGCCATGCAGGATTTCTACGCTTTGCGGAAGGATGTCGAGCTGGCTCTA 293 consensus_14368#3 -CTACCGAATGGGCCATGCAGGATTTCTACGCTTTGCGGAAGGATGTCGAGCTGGCTCTA 203 consensus_14368#0 GCTACCGAATGGGCCATGCAGGATTTCTACGCTTTGCGGAAGGATGTCGAGCTGGCTGTA 410 consensus_14368#1 TGGGGGCAGCAGATCCGCAACTACGTCTTCCACCCCTACAAGCTCGTCAAGGACGTCCGC 309 * * * * * *** * *** *** ** * consensus_14368#2 GCGCGTGTCGGTGAAGTCAGGCAGT-CTGCTGGTTTGGATCAGCTTGAGGAGGAAATCGC 352 consensus_14368#3 GCGCGTGTCGGTGAAGTCAGGCAGT-CTGCTGGTTTGGATCAGCTTGAGGAGGA------ 256 consensus_14368#0 GCGCGCGTCAGTGAAGTCAGGCAGT-CTGCTGGTTTGGATCAGCTTGAGGAGGAAATCGC 469 consensus_14368#1 AC-CGCCTGCGAGACGTCGGACATCACCGGCGTCATGGA-CGGC--GAGCTGGACACC-- 363 * ** * * ** *** * ** * * * **** * ** *** *** consensus_14368#2 TTCGCTCGAGAAGAAATCTGCAGATAGTTCCTTGTGGGATGATCCTTCCAAGGCA-CAAG 411 consensus_14368#3 ------------------------------------------------------------ consensus_14368#0 TTCGCTCGAGAAGAAATCTGCAGATAGTTCCTTGTGGGATGATCCTTCCAAGGCA-CAGG 528 consensus_14368#1 TTCATCAGAGCCTACCTCAAGTACAAGCTCTCTGCCGCTGCTGAGGAGCAAAGCGTCAAG 423 consensus_14368#2 AGATACTTGTTGCTCTGACAGAGGTCAAAGATAGAGTCAAGCTTCTCAACGATTTGAAGT 471 consensus_14368#3 ------------------------------------------------------------ consensus_14368#0 AGATACTTGTTGCTCTGACAGAGGTCAAAGACAGAGTCAAGCTTCTCAACGATTTGAAGT 588 consensus_14368#1 TGACAGATTTGCATCCAGTGTCCGATGCAACAAGCCAACAACCAATGCTTGTGCTATAGG 483 consensus_14368#2 CGCAGGTTTAACCAACTCGATATTCTTCTCCACCCATACTAGAGAT-GATACAGAATGAT 530 consensus_14368#3 ------------------------------------------------------------ consensus_14368#0 TGCAGGTTGAAGAAGCTGAGACCATTGTAAAGCTTACTGAGGAGTTAGATTCCATAGATA 648 consensus_14368#1 CGCAGAATTTTGACGCAGAGCAAGAACCCCATCACGTAGTAAGATTGTA---AGAATAGC 540 consensus_14368#2 GTAGAATTCTAATTGTTATTATACTATAGCTATATATATTGAAATGATTGTTTAATA--C 588 consensus_14368#3 ------------------------------------------------------------ consensus_14368#0 CTGGCCTTCTTGAAGAAGCCTCAAAGATCATAAAGGCATTAAACAAAGCACTAGATA--A 706 consensus_14368#1 CTGGAATTAACCGTGTGCTTGTGCTATAGGTGCAGAATTCGTTTTGCTTCTCAACTAAGC 600 consensus_14368#2 CTCCTATAGTAAATTAGTAATTCTCATTATTATAATGTGGATTTGCCGCGTTCATAAATG 648 consensus_14368#3 ------------------------------------------------------------ consensus_14368#0 CTTTGAGA-TGACACAGCTTCTTTCTGGACCTTATGACAAGGAAGGTGCTGTGATTAATA 765 consensus_14368#1 ACCCAAAATTTATTTTGGGGCTTCATGTATTAGTGGATATATTAATTTCATTTCTACCCA 660 consensus_14368#2 ATAGGATACAAG------------------------------------------------ 660 consensus_14368#3 ------------------------------------------------------------ consensus_14368#0 TTACTGCAGGTGCTGGTGGCACCGATGCCCAGGATTGGGCTGACATGTTACTGAGGATGT 825 consensus_14368#1 ATA-TATATAAGCCTCTCACCTGCCTGAAAAAAAAAAAAAA------------------- 700 consensus_14368#2 ------------------------------------------------------------ consensus_14368#3 ------------------------------------------------------------ consensus_14368#0 ATGTTAGGTGGGGAGAGAAGCAGCGGTACAAGACAAGAGTGGTTGAGAAATCCCCTGGTG 885 consensus_14368#1 ------------------------------------------------------------ consensus_14368#2 ------------------------------------------------------------ consensus_14368#3 ------------------------------------------------------------ consensus_14368#0 AAGAAGCTGGAATAAAATCAGCTACCATTGAATTAGAAGGAAGATATGCCTATGGGTATC 945 consensus_14368#1 ------------------------------------------------------------ consensus_14368#2 ------------------------------------------------------------ consensus_14368#3 ------------------------------------------------------------ consensus_14368#0 TCTCTGGGGAGAAAGGGACACACAGAATTGTTCGTCAGTCCCCATTCAATGCTAAAGGGC 1005 consensus_14368#1 ------------------------------------------------------------ consensus_14368#2 ------------------------------------------------------------ consensus_14368#3 ------------------------------------------------------------ consensus_14368#0 TTAGGCAGACAAGCTTTGCTGGTGTTGAAGTAATGCCTCTACTGCCAGAAGAGTCCATGG 1065 consensus_14368#1 ------------------------------------------------------------ consensus_14368#2 ------------------------------------------------------------ consensus_14368#3 ------------------------------------------------------------ consensus_14368#0 ATGTAGAAATACCCGAAGAGGATCTGGAGATAAGCTTCACTAGAGCAGGCGGCAAAGGAG 1125 consensus_14368#1 ------------------------------------------------------------ consensus_14368#2 ------------------------------------------------------------ consensus_14368#3 ------------------------------------------------------------ consensus_14368#0 GCCAGAATGTGAACAAGGTGGAGACGGCTGTTCGCATGGTCCATATACCCACGGGCATCG 1185 consensus_14368#1 ------------------------------------------------------------ consensus_14368#2 ------------------------------------------------------------ consensus_14368#3 ------------------------------------------------------------ consensus_14368#0 CTGTTCGTTGCACAGAGGAGAGGAGCCAGTTGGCCAACAAGATAAAGGCCCTGAGCCGGC 1245 consensus_14368#1 ------------------------------------------------------------ consensus_14368#2 ------------------------------------------------------------ consensus_14368#3 ------------------------------------------------------------ consensus_14368#0 TGAAGGCGAAGCTGCTGGTGATCGCCGAGGAGCAGCGGGCGTCGGAGATCAAGCAGATCC 1305 consensus_14368#1 ------------------------------------------------------------ consensus_14368#2 ------------------------------------------------------------ consensus_14368#3 ------------------------------------------------------------ consensus_14368#0 GCGGCGACGCGGTGAAGGCGGAGTGGGGGCAGCAGATCCGCAACTACGTCTTCCACCCCT 1365 consensus_14368#1 ------------------------------------------------------------ consensus_14368#2 ------------------------------------------------------------ consensus_14368#3 ------------------------------------------------------------ consensus_14368#0 ACAAGCTCGTCAAGGACGTCCGCACCGCCTGCGAGACGTCGGACATCACCGGCGTCATGG 1425 consensus_14368#1 ------------------------------------------------------------ consensus_14368#2 ------------------------------------------------------------ consensus_14368#3 ------------------------------------------------------------ consensus_14368#0 ACGGCGAGCTGGACACCTTCATCAGAGCCTACCTCAAGTACAAGCTCTCTGCCGCTGCTG 1485 consensus_14368#1 ------------------------------------------------------------ consensus_14368#2 ------------------------------------------------------------ consensus_14368#3 ------------------------------------------------------------ consensus_14368#0 AGGAGCAAAGCGTCAAGTGACAGATTTGCATCCAGTGTCCGATGCAACAACCGTGCTTGT 1545 consensus_14368#1 ------------------------------------------------------------ consensus_14368#2 ------------------------------------------------------------ consensus_14368#3 ------------------------------------------------------------ consensus_14368#0 GCTATAGGCGCAGAATTTTGATGCAGAGCAAGAACCCCATCACGTAGTAAGCTTGTAAGA 1605 consensus_14368#1 ------------------------------------------------------------ consensus_14368#2 ------------------------------------------------------------ consensus_14368#3 ------------------------------------------------------------ consensus_14368#0 ATAGCCTGAAATTAACCGTGCAGAATTCGGTTTGCTTGGCTCTACTAAGCACCCAAATTT 1665 consensus_14368#1 ------------------------------------------------------------ consensus_14368#2 ------------------------------------------------------------ consensus_14368#3 ------------------------------------------------------------ consensus_14368#0 TATTTTGGGGCTTCATGTATTAGTGGATATATTAATTTCATTTCTACCCAATATATATAA 1725 consensus_14368#1 ------------------------------------------------------------ consensus_14368#2 ------------------- consensus_14368#3 ------------------- consensus_14368#0 GCCTCTCACCTGCCAAACG 1744 consensus_14368#1 ------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||