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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14372#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1290 fasta sequence
[TATTGGAGCAAAACCATTTCCTTCTCTCCTGCCTCCTTGGGCTCATCTCTCTCTCTCTCACTCTTCTCCCTCTTCTCACCACCAGACGCCATCAAACCCCTACCTCCCGCGGCGGCGGCGGCGGCGGCGGCCGGCGGCGAGCTCCGGACAGACAGAGGAGGGCGCGA-CGGAGAGGGCGAGGAGGGAAGGAGGGAGGGAGGCGACAGGCATGGGGACCCTCGGGC-GCGCGATCTACACGGTGGGG-AAGTGGAT-CCGCGGCACGGGGCAGGCCATGGACCGCCTCGGATCCACCAT-CCAGGGCGGCCTCCGCGTCGAGGAGCAGCTTTCAAGGCATCGCACGATCATGAACATA-TTTGAGAAAGAGCCCAGAGTCCACAAGGATGTTTTTGTTGCTCCCAGTGCAGCTGTGATTGGCGATG-TTGAGATCGGACATGGA-TCCTCAATCTGGTACGGCTCCATTTTAAGAGGTGATGTCAAC-AGCATTCA-TATTGGATCTGGATCAAATATACAAGACAATTCCCTTGTACATG-TTGCAAAAGCTAACATCAGCGGGAAGGTTCTCCCAACCATAATTGGAAACAATGTTACAATAGGTCATAGTGCTGTTCTGCA-CGCATGCACCGTCGAGGA-TGAAGCTTTTGTTGGTATGGGTGCCACTCTGCTTGATGGAGTGGTCGTTGAAAAGCACAGCATGGTTGGTGCAGGATCGCTTGTTAAGCAGAACACAAGGATTCCTTCTGGAGAGGTCTGGGTCGGTAATCCTGCCAAGTTCCTAAGAAAGCTTACTGAAGAGGAGATAGCGTTCATTGCTCAGTCAGCAACGAACTACATCAATCTGGCCCAAGTCCATGCTGCCGAGAATTCCAAGACCTTCGACGAGATCGAGCTCGAGAAGATGCTGAGGA-A-AAAGTATGCCCACAAAGACGAGGAGTATGATTCGATGCTCGGCGTGGTCCGTGAGATC-CCGCCGGAGCTCATCCTCCCGGACAACATCCTCCCAAACAAGGCTCAGAAGGCTGTTGCTCACTGAATGTTTTGTCAAGCTCCCGCTTGGGAAAAGCTTGGTTTTTTTGTTACGTGTTTTGACCTGGAACAACATTTGACACATGTCTTTTGATCTCATTGTCTGTTTTTCAAGCCCAATAAGAATTTGGGTCGAGCATTGTTTTAGGATCGACCATATACAGTACCTCTCTTTGCATTACAATGAAGAGCAGTTAATTTGGGTCACTTTTTACATCTTTA-CTGAAGTAGAAACGCGTCCTCTGTCTGTGACAGTTTTTTTAAAAA]
[+] EMBL AU064007 [TATTGGAGCAAAACCATTTCCTTCTCTCCTGCCTCCTTGGGCTCATCTCTCTCTCTCTCACTCTTCTCCCTCTTCTCACCACCAGACGCCATCAAACCCCTACCTCCCGCGGCGGCGGCGGCGGCGGCGGCCGGCGGCGAGCTCCGGACAGACAGAGGAGGGCGCGA CGGAGANGGCGAGGAGGGAAGGAGGGAGGGAGGCGACAGGCATGGGGACCCTCGGGC GCGCGATCTACACGGTGGGG AAGTGGAT CCGCGGCACGGGGCANGCCATGGACCGCCTCGGATNCAACAT CCAAGGCGGCCTCCGCGTCGAa ]
[+] EMBL AK058974 [ ATCTCTCTCTCTCTCACTCTTCTCCCTCTTCTCACCACCAGACGCCATCAAACCCCTACCTCCCGCGGCGGCGGCGGCGGCGGCGGCCGGCGGCGAGCTCCGGACAGACAGAGGAGGGCGCGAGCGGAGAGGGCGAGGAGGGAAGGAGGGAGGGAGGCGACAGGCATGGGGACCCTCGGGC GCGCGATCTACACGGTGGGG AAGTGGAT CCGCGGCACGGGGCAGGCCATGGACCGCCTCGGATCCACCAT CCAGGGCGGCCTCCGCGTCGAGGAGCAGCTTTCAAGGCATCGCACGATCATGAACATA TTTGAGAAAGAGCCCAGAGTCCACAAGGATGTTTTTGTTGCTCCCAGTGCAGCTGTGATTGGCGATG TTGAGATCGGACATGGA TCCTCAATCTGGTACGGCTCCATTTTAAGAGGTGATGTCAAC AGCATTCA TATTGGATCTGGATCAAATATACAAGACAATTCCCTTGTACATG TTGCAAAAGCTAACATCAGCGGGAAGGTTCTCCCAACCATAATTGGAAACAATGTTACAATAGGTCATAGTGCTGTTCTGCA CGCATGCACCGTCGAGGA TGAAGCTTTTGTTGGTATGGGTGCCACTCTGCTTGATGGAGTGGTCGTTGAAAAGCACAGCATGGTTGGTGCAGGATCGCTTGTTAAGCAGAACACAAGGATTCCTTCTGGAGAGGTCTGGGTCGGTAGTCCTGCCAAGTTCCTAAGAAAGCTTACTGAAGAGGAGATAGCGTTCATTGCTCAGTCAGCAACGAACTACATCAATCTGGCCCAAGTCCATGCTGCCGAGAATTCCAAGACCTTCGACGAGATCGAGCTCGAGAAGATGCTGAGGA A AAAGTATGCCCACAAAGACGAGGAGTATGATTCGATGCTCGGCGTGGTCCGTGAGATC CCGCCGGAGCTCATCCTCCCGGACAACATCCTCCCAAACAAGGCTCAGAAGGCTGTTGCTCACTGAATGTTTTGTCAAGCTCCCGCTTGGGAAAAGCTTGGTTTTTTTGTTACGTGTTTTGACCTGGAACAACATTTGACACATGTCTTTTGATCTCATTGTCTGTTTTTCAAGCCCAATAAGAATTTGGGTCGAGCATTGTTTTAGGATCGACCATATACAGTACCTCTCTTTGCATTACAATGAAGAGCAGTT ]
[+] EMBL AK103904 [ CTCTCTCTCTCTCACTCTTCTCCCTCTTCTCACCACCAGACGCCATCAAACCCCTACCTCCCGCGGCGGCGGCGGCGGCGGCGGCCGGCGGCGAGCTCCGGACAGACAGAGGAGGGCGCGAGCGGAGAGGGCGAGGAGGGAAGGAGGGAGGGAGGCGACAGGCATGGGGACCCTCGGGC GCGCGATCTACACGGTGGGG AAGTGGAT CCGCGGCACGGGGCAGGCCATGGACCGCCTCGGATCCACCAT CCAGGGCGGCCTCCGCGTCGAGGAGCAGCTTTCAAGGCATCGCACGATCATGAACATA TTTGAGAAAGAGCCCAGAGTCCACAAGGATGTTTTTGTTGCTCCCAGTGCAGCTGTGATTGGCGATG TTGAGATCGGACATGGA TCCTCAATCTGGTACGGCTCCATTTTAAGAGGTGATGTCAAC AGCATTCA TATTGGATCTGGATCAAATATACAAGACAATTCCCTTGTACATG TTGCAAAAGCTAACATCAGCGGGAAGGTTCTCCCAACCATAATTGGAAACAATGTTACAATAGGTCATAGTGCTGTTCTGCA CGCATGCACCGTCGAGGA TGAAGCTTTTGTTGGTATGGGTGCCACTCTGCTTGATGGAGTGGTCGTTGAAAAGCACAGCATGGTTGGTGCAGGATCGCTTGTTAAGCAGAACACAAGGATTCCTTCTGGAGAGGTCTGGGTCGGTAATCCTGCCAAGTTCCTAAGAAAGCTTACTGAAGAGGAGATAGCGTTCATTGCTCAGTCAGCAACGAACTACATCAATCTGGCCCAAGTCCATGCTGCCGAGAATTCCAAGACCTTCGACGAGATCGAGCTCGAGAAGATGCTGAGGA A AAAGTATGCCCACAAAGACGAGGAGTATGATTCGATGCTCGGCGTGGTCCGTGAGATC CCGCCGGAGCTCATCCTCCCGGACAACATCCTCCCAAACAAGGCTCAGAAGGCTGTTGCTCACTGAATGTTTTGTCAAGCTCCCGCTTGGGAAAAGCTTGGTTTTTTTGTTACGTGTTTTGACCTGGAACAACATTTGACACATGTCTTTTGATCTCATTGTCTGTTTTTCAAGCCCAATAAGAATTTGGGTCGAGCATTGTTTTAGGATCGACCATATACAGTACCTCTCTTTGCATTACAATGAAGAGCAGTTAATTTGGGTCACTTTTTACATCTTTA CTGAAGTAGAAACGCGTCC ]
[+] EMBL C72188 [ TCTCACTCTTCTCCCTCTTCTCACCACCAGACGCCATCAAACCCCTACCTCCCGCGGCGGCGGCGGCGGCGGCGGCCGGCGGCGAGCTCCGGACAGACAGAGGAGGGCGCGA CGGAGAGGGCGAGGAGGGAAGGAGGGAGGGAGGCGACAGGCATGGGGACCCTCGGGC GCGCGATCTACACGGTGGGG AAGTGGAT CCGCGGCACGGGGCAGGCCATGGACCGCCTCGGATCCACCAT CCAGGGCGGCCTCCGCGTCGAGGAGCAGCTTTCAAGGCATCGCACGATCATGAACATA TTTGAGAAAGAGCCCAGAGTCCACAAGGATGTTTTTGTTGCTTCCAGTGCAANTGTGATTTGCGATG TTGAGATCGG CATGGA TCCTCAATCTTGTACGGNTCCATTTTAAGAGG ]
[+] EMBL AU166567 [ GAGGCGACAGGCATGGGGACCCTCGGGCNGCGCGATCTACACGGTGGGGAAAGTGGATCCCGCGGCACGGGGCAGGCCATGGACCGCCTCGGATCCACCATCCCAGGGCGGCCTCCGCGTCGAGGAGCAGCTTTCAAGGCATCGCACGATCATGAACATATTTTGAGAAAGAGCCCAGAGTCCACAAGGATGTTTTTNTTGCTCCCANTGCAACTGTGATTGGCGATGTTTGAGATCGGACATGGATTCCTTAATCTGGTACGGGTTCATTTTAAGAGGNGATGTCAACAAGCATTCATTTTTGGATCTGGATCAAATATACAAGACAATTCCCTTGNACATGTTTGCAAAAGCTTACATCAGCGGGAAAGGTCTTCCAACCATAATTGGAAACAATG ]
[-] EMBL CA759039 [ CCATAA TGGAAACAATGTT CAATAGGTNATAGTGCTGTTCTGCA CGCATGNACNGTCGAGGA TGAAGC TTTGTTGGTATGGGTGCCACTCTGCTTGATGGAGTGGTCG TGAAAAGCACAGCATGGTTGGTGCAGGATCGCTTGTTAAGCAGAACACAAGGATTCCTTCTGGAGAGGTCTGGGTCGGTAATCCTGCCAAGTTCCTAAGAAAGCTTACTGAAGAGGAGATAGCGTTCATTGCTCAGTCAGCAACGAACTACATCAATCTGGCCCAAGTCCATGCTGCCGAGAATTCCAAGACCTTCGACGAGATCGAGCTCGAGAAGATGCTGAGGA A AAAGTATGCCCACAAAGACGAGGAGTATGATTCGATGCTTGGCGTGGTCCGTGAGATT CCGCCGGAGCTCATCCTCCCGGACAACATCCTTCCAAACAAGGCTTAGAAGGCTGTTGCTCACTGAATGTTTTGTCAAGCTCCCGCTTGGGAAAAGCTTGGTTTTTTTGTTACGTGTTTTGACCTGGAACAACATTTGACACATGTCTTTTGATCTCATTGTCTGTTTTTCAAGCCCAATAAGAATTTGGGTCGAGCATTGTTTTAGGATCGACCATATACAGTACCTCTCTTTGCATTACAATGAAGAGCAGTTAATTTGGGTCACTTTTTACATCTTTA CTGAAAAAAAAAaa ]
[+] EMBL AU082386 [ TAGTGCTGTTCTGCACCGCATGCACCNTCGAGGATTGAA CTTTTGTTGGTATGGNTGCCACTCTGCTTGATGGAGTGGTCGTTGAAAAGCACAGCATGNTTGNTGCAGGATCGCTTGTTAAGCAGAACACAAGGATTCCTTCTGGAGAGGTCTGGGTCGGTAATCCTGCCAAGTTCCTAAGAAAGCTTACTGAAGAGGAGATAGCGTTCATTGCTCAGTCAGCAACGAACTACATCAATCTGGCCCAAGTCCATGCTGCCGAGAATTCCAAGACCTTCGACGAGATCGAGCTCGAGAAGATGCTGAGGA A AAAGTATGCCCACAAAGACGAGGAGTATGATTCGATGCTCGGCGTGGTCCGTGAGATC CCGCCGGAGCTCATCCTCCCGGACAACATCCTCCCAAACAAGGCTCAGAAGGCTGTTGCTCACTGAATGTTTTGTCAAGCTCCCGCTTGGGAAAAGCTTGGTTTTTTTGTTACGTGTTTTGACCTGGAACAACATTTGACACATGTCTTTTGATCTCATTGTCTGTTTTTCAAGCCCAATAAGAATTTGGGTCGAGCATTGTTTTAGGATCGACCATATACAGTACCTCTCTTTGCATTACAATGAAGAGCAGTTAATTTGGGTCACTTTTTACATCTTTA CTGAAGTAGAAACGCGTCCTCTGTCTGTGACAGTTTTTTTAAAAA]
[+] EMBL BI806276 [ anTGTAGAGGAGATAGCGTTCATTGCTCAGTCAGCAACGANCTACATCAATCTGGCCCAAGTCCATGCTGCCGACAATTCCAAGACCTTCGACGAGATCGAGCTCGAGAAGATGCTGAGGANATAATGTATTCCCNC AAGACGAGGAGTATGATTCGATGCTCGGCGTGGTCCGTGAGATCTCCGCCGGAGCTCATCCTCCCGGACAACATCCTCCC AACAAGGCTCAGAAGGCTGTTGCTCACTGAATGTTTTGTCAAGCTCCCGCTTGGGAAAAGCTTGGTTTTTTTGTTACGTGTTTTGACCTGGAACAACATTTGACACATGTCTTTTGATCTCATTGTCTGTTTTTCAAGCCC ATAAGAATTTGGGTCGAGCATTGTTTTAGGATCGACCATATACAGTACCTCTCTTTGCATTAC ATGAAGAGC GTTAATTTGGGTCACTTTTTACATCTTTACCTGAAGTAGAAACGCGTCCTCTGTCNGTGAaaaaaaaaa ]
[+] EMBL AU166566 [ GAGATAGCGTTCATTGCTCAGTCAGCAACGAACTACATCAATCTGGCCCAAGTCCATGCTGCCGAGAATTCCAAGACCTTNGACGAGATCGAGCTCGAGAAGATGCTGAGGA A AAAGTATGCCCACAAAGACGAGGAGTATGATTCGATGCTCGGCGTGGTCCGTGAGATC CCGCCGGAGCTCATCCTCCCGGACAACATCCTCCCAAACAAGGCTCAGAAGGCTGTTGCTCACTGAATGTTTTGTCAAGCTCCCGCTTGGGAAAAGCTTGGTTTTTTTGTTACGTGTTTTGACCTGGAACAACATTTGACACATGTCTTTTGATCTCATTGTCTGTTTTTCAAGCCCAATAAGAATTTGGGTCGAGCATTGTTTTAGGATCGACCATATACAGTACCTCTCTTTGCATTACAATGAAGAGCAGTTAATTTaaaaaaaa ]
[+] EMBL AU174163 [ ATTGCTCAGTCAGCAACGAACTACATCAATCTGGCCCAAGTCCATGCTGCCGAGAATTCCAAGACCTTCGACGAGATCGAGCTCGAGAAGATGCTGAGGA A AAAGTATGCCCACAAAGACGAGGAGTATGATTCGATGCTCGGCGTGGTCCGTGAGATC CCGCCGGAGCTCATCCTCCCGGACAACATCCTCCCAAACAAGGCTCAGAAGGCTGTTGCTCACTGAATGTTTTGTCAAGCTCCCGCTTGGGAAAAGCTTGGTTTTTTTGTTACGTGTTTTGACCTGGAACAACATTTGACACATGTCTTTTGATCTCATTGTCTGTTTTTCAAGCCCAATAAGAATTTGGGTCGAGCATTGTTTTAGGATCGACCATATACAGTACCTCTCTTTGCATTACAATGAAGAGCAGTTAATTTGGGTCAaaaaa ]
[+] EMBL BI796271 [ gggTTCGATGCTCGGCGTGGTCCGTGAGATC CCGCCGGAGCTCATCCTCCCGGACAACATCCTCCC AACAAGGCTCAGAAGGCTGTTGCTCACTGAATGTTTTGTCAAGCTCCCGCTTGGGAAAAGCTTGGTTTTTTTGTTACGTGTTTTGACCTGGAACAACATTTGACACATGTCTTTTGATCTCATTGTCTGTTTTTCAAGCCCAATAAGAATTTGGGTCGAGCATTGTTTTAGGATCGACCATATACAGTACCTCTCTTTGCATTAC ATGAAGAGCAGTTAATTTGGGTCACTTTTTACAaaaa ]
consensusID : consensus_14372#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1136 fasta sequence
[TCTCACCTCGGCGGCGGGCGGCGGCCGGCGGCGAGGTCCGGACAGCGGAGGGAGCAAGCGGGGAGGACGAGGCATGGGGACCCTGGGGCGGGCGATCTACACGGCGGGGAAGTGGATCCGCGGCACGGGGCAGGCCATGGACCGCCTCGGATCCACCATCCAGGGCGGCCTCCGCGTCGACGAGCAGCTGCCAAGGCATCGCACAATCATGAACATATTTGAGAAAGAGCCCAGAATCCACAAGGATGTTTTTGTTGCTCCCAGTGCAGCTGTGATTGGTGATATTGAGATTGGACATGGATCCTCAATCTGGTATGGCTCCATTTTAAGAGGTGATGTCAACAGCATTCATATTGGAGTTGGAACAAATATACAAGACAATTCCCTTGTACATGTTTCAAAAGCTAATATCAGTGGGAAGGTTCTCCCAACCATAATTGGAAACAGTGTTACAATAGGTCACAGTGCTGTTCTACACGCATGCATCGTCGAGGATGAAGCTTTTGTTGGTATGGGTGCCACTCTGCTTGATGGAGTGGTGGTTGAAAAGCACAGCATGGTTGGTGCAGGATCCCTTGTAAAGCAAAACACCAGGATTCCTTCTGGAGAGGTCTGGGTTGGTAATCCTGCCAAGTTCCTAAGAAAGCTTACTGAAGAGGAGATGGCGTTCATTGCACAGTCAGCAACAAACTATATCAATTTGGCTCAAGTCCACGCAGCCGAGAATGCCAAGACCTTCGATGAGATTGAGCTCGAGAAGATGCTGAGGAAGAAGTTTGCGCACAAAGACGAGGAGTACGATTCGATGCTCGGCGTGGTCCGTGAGATCCCACCAGAGCTTATCCTCCCGGACAGTATCCTCCCAAACAAGGCTCAAAAAGCTGTTGCTCACTGAGTGTTTTCTTAAAGCTCCCGCTTGGGAAGCTTTGCTGTTATTACATGTTGACTTGTTTATGACAGTTTTGTCTGTCCGTAGAGGAAAAGGAAGTCAATTGGTTCCCCTGCTTTTGACTTGCTTGCTTGATAGATGTGAAGTTCAAGTTATTTGATACTAAATAGCTGTAGTGTGAAAAAGTCAGTGAGCTCAGAAAGTAGAAATTTTGAGGATTTTCGTGGGTGCAGAACTAATTTATGCA]
[+] EMBL AK060158 [TCTCACCTCGGCGGCGGGCGGCGGCCGGCGGCGAGGTCCGGACAGCGGAGGGAGCAAGCGGGGAGGACGAGGCATGGGGACCCTGGGGCGGGCGATCTACACGGCGGGGAAGTGGATCCGCGGCACGGGGCAGGCCATGGACCGCCTCGGATCCACCATCCAGGGCGGCCTCCGCGTCGACGAGCAGCTGCCAAGGCATCGCACAATCATGAACATATTTGAGAAAGAGCCCAGAATCCACAAGGATGTTTTTGTTGCTCCCAGTGCAGCTGTGATTGGTGATATTGAGATTGGACATGGATCCTCAATCTGGTATGGCTCCATTTTAAGAGGTGATGTCAACAGCATTCATATTGGAGTTGGAACAAATATACAAGACAATTCCCTTGTACATGTTTCAAAAGCTAATATCAGTGGGAAGGTTCTCCCAACCATAATTGGAAACAGTGTTACAATAGGTCACAGTGCTGTTCTACACGCATGCATCGTCGAGGATGAAGCTTTTGTTGGTATGGGTGCCACTCTGCTTGATGGAGTGGTGGTTGAAAAGCACAGCATGGTTGGTGCAGGATCCCTTGTAAAGCAAAACACCAGGATTCCTTCTGGAGAGGTCTGGGTTGGTAATCCTGCCAAGTTCCTAAGAAAGCTTACTGAAGAGGAGATGGCGTTCATTGCACAGTCAGCAACAAACTATATCAATTTGGCTCAAGTCCACGCAGCCGAGAATGCCAAGACCTTCGATGAGATTGAGCTCGAGAAGATGCTGAGGAAGAAGTTTGCGCACAAAGACGAGGAGTACGATTCGATGCTCGGCGTGGTCCGTGAGATCCCACCAGAGCTTATCCTCCCGGACAGTATCCTCCCAAACAAGGCTCAAAAAGCTGTTGCTCACTGAGTGTTTTCTTAAAGCTCCCGCTTGGGAAGCTTTGCTGTTATTACATGTTGACTTGTTTATGACAGTTTTGTCTGTCCGTAGAGGAAAAGGAAGTCAATTGGTTCCCCTGCTTTTGACTTGCTTGCTTGATAGATGTGAAGTTCAAGTTATTTGATACTAAATAGCTGTAGTGTGAAAAAGTCAGTGAGCTCAGAAAGTAGAAATTTTGAGGATTTTCGTGGGTGCAGAACTAATTTATGCA]
[+] EMBL CB000217 [ GGGGAGGACGAGGCATGGGGACCCTGGGGCGGCCTATCTACACGGCGGGGAAGTGGATCCGCGGCACGGGGCAGGCCATGGACCGCCTCGGATCCACCATCCAGGGCGGCCTCCGCGTCGACGAGCAGCTGCCAAGGCATCGCACAATCATGAACATATTTGAGAAAGAGCCCAGAATCCACAAGGATGTTTTTGTTGCTCCCAGTGCAGCTGTGATTGGTGATATTGAGATTGGACATGGATCCTCAATCTGGTATGGCTCCATTTTAAGAGGTGATGTCAACAGCATTCATATTGGAGTTGGAACAAATATACAAGACAATTCCCTTGTACATGTTTCAAAAGCTAATATCAGTGGGAAGGTTCTCCCAACCATAATTGGAAACAGTGTTACAATAGGTCACAGTGCTGTTCTACACGCATGCATCGTCGAGGATGAAGCTTTTGTTGGTATGGGTGCCACTCTGCTTGATGGAGTGGTGGTTGAAAAGCACAGCATGGTTGGTGCAGGATCCCTTGTAAAGCAAAACACCAGGATTCCTTCTGGAGAGGTCTGGGTTGGTAATCCTGCCAAGTTCCTAAGAAAGCTTACTGAAGAGGAGATGGCGTTCATTGCACAGTCAGCAACAAACTATATCAATTTGGCTCAAGTCCACGCACCCGAGAATGCCCAGACCTTCGATGAGATTG ]
consensusID : consensus_14372#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 646 fasta sequence
[TTCTCAGACACTGATATACGATGCTTACAATCGTTCTTTGTTCCACAACATATCTAATCGTTTGGATAATGGAATTGAGTGATTCCAAGGTAGAGGTTTAGTCTACATATTTATTTTTCCAAAGAACAATTACTTTAAAGTTACAATGCATTGATGACATATTTACATGAATCTGTGTAGTTTTTCTTTCCTTATTTCAAAACCTGTAATTGGGGACTGGAGGATAACCAAAGTACCAAACAACGCTGCATGTTTATACTGATGTCCATATTTTACGTTCCATGCTATTGCTATGAACAGCTGCGAGACTTGAATATCTTTTGGTATTTATATTGTATATAACTTAATATATTACATGACTTTATTGAACCATATGGTTTCTTGACACTGCTAGGTCTGGGTCGGTAATCCTGCCAAGTTCCTAAGAAAGCTTACTGAAGAGGAGATAGCGTTCATTGCTCAGTCAGCAACGAACTACATCAATCTGGCCCAAGTCCATGCTGCCGAGAATTCCAAGACCTTCGACGAGATCGAGCTCGAGAAGATGCTGAGGAAAAAGTATGCCCACAAAGACGAGGAGTATGATTCGATGCTCGGCGTGGTCCGTGAGATCCCGCCGGAGCTCATCCTCCCGGACAACATCCTC]
[-] EMBL CB638506 [TTCTCAGACACTGATATACGATGCTTACAATCGTTCTTTGTTCCACAACATATCTAATCGTTTGGATAATGGAATTGAGTGATTCCAAGGTAGAGGTTTAGTCTACATATTTATTTTTCCAAAGAACAATTACTTTAAAGTTACAATGCATTGATGACATATTTACATGAATCTGTGTAGTTTTTCTTTCCTTATTTCAAAACCTGTAATTGGGGACTGGAGGATAACCAAAGTACCAAACAACGCTGCATGTTTATACTGATGTCCATATTTTACGTTCCATGCTATTGCTATGAACAGCTGCGAGACTTGAATATCTTTTGGTATTTATATTGTATATAACTTAATATATTACATGACTTTATTGAACCATATGGTTTCTTGACACTGCTAGGTCTGGGTCGGTAATCCTGCCAAGTTCCTAAGAAAGCTTACTGAAGAGGAGATAGCGTTCATTGCTCAGTCAGCAACGAACTACATCAATCTGGCCCAAGTCCATGCTGCCGAGAATTCCAAGACCTTCGACGAGATCGAGCTCGAGAAGATGCTGAGGAAAAAGTATGCCCACAAAGACGAGGAGTATGATTCGATGCTCGGCGTGGTCCGTGAGATCCCGCCGGAGCTCATCCTCCCGGACAACATCCTC]
consensusID : consensus_14372#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence
[CATCGCACGATCATGAACATATTTGAGAAAGAGCCCAGAGTCCACAAGGATGTTTTTGTTGCTCCCAGTGCAGCTGTGATTGGCGATGTTGAGATCGGACATGGATCCTCAATCTGGTACGGCTCCATTTTAAGAGGTAAGCTCTTTGTCAATAAACACTAGTATTGATACATGTGCTACTAATAAGCATGGGCTTTGTCTTGATAATTATATATCTCACCTTTCTTCTTGGCAACAAGTATGTTTACTGTGCATTTTGTTTTCAGAGTAAACTTGCTTCTAACTGCACTTCATCTATTGCTATGGTATATAGAAAACTGACATAACTGCCAGTTGTCAGGAGATGCACAGTTTTATCAAAGCACACCATGTTTTCATTGTTAGACTCTCAATCGACACTTCGCATGAAACTTCAGTTTTTTACCTTTATTCGACGAAGTGTCAATCAAGGTTTATCCTACCGCTAGTAGACTATTTACTGACCTCCGGCAGTAGCACGATTACCGCAACAAATTCGTATTCCAAATTTTGAACTCCCTGCAGTAATACACGGTTACGTGCGGTAACCACTGTGTGTCGAAGCTGGAAGAAAAAGAATGCAGGAAAAATTG]
[+] EMBL CB638505 [CATCGCACGATCATGAACATATTTGAGAAAGAGCCCAGAGTCCACAAGGATGTTTTTGTTGCTCCCAGTGCAGCTGTGATTGGCGATGTTGAGATCGGACATGGATCCTCAATCTGGTACGGCTCCATTTTAAGAGGTAAGCTCTTTGTCAATAAACACTAGTATTGATACATGTGCTACTAATAAGCATGGGCTTTGTCTTGATAATTATATATCTCACCTTTCTTCTTGGCAACAAGTATGTTTACTGTGCATTTTGTTTTCAGAGTAAACTTGCTTCTAACTGCACTTCATCTATTGCTATGGTATATAGAAAACTGACATAACTGCCAGTTGTCAGGAGATGCACAGTTTTATCAAAGCACACCATGTTTTCATTGTTAGACTCTCAATCGACACTTCGCATGAAACTTCAGTTTTTTACCTTTATTCGACGAAGTGTCAATCAAGGTTTATCCTACCGCTAGTAGACTATTTACTGACCTCCGGCAGTAGCACGATTACCGCAACAAATTCGTATTCCAAATTTTGAACTCCCTGCAGTAATACACGGTTACGTGCGGTAACCACTGTGTGTCGAAGCTGGAAGAAAAAGAATGCAGGAAAAATTG]
consensusID : consensus_14372#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 178 fasta sequence
[GATCTCATTGTCTGTTTTTNAAGCCCAATAAGAATTTGGGTCGAGCNTTGTTTTAGGCTCGACCATNTNCAGTACCTCTCTTTGCATTNCAATGAAGNGCAGTTAATTTGGGTCNAAAANNNCCNCNCANNAANAANNANCNACNANACNAAAAACNAAAAANANNAANNANAAAAAA]
[+] EMBL AU082389 [GATCTCATTGTCTGTTTTTNAAGCCCAATAAGAATTTGGGTCGAGCNTTGTTTTAGGCTCGACCATNTNCAGTACCTCTCTTTGCATTNCAATGAAGNGCAGTTAATTTGGGTCNAAAANNNCCNCNCANNAANAANNANCNACNANACNAAAAACNAAAAANANNAANNANAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14372#0 TATTGGAGCAAAACCATTTCCTTCTCTCCTGCCTCCTTGGGCTCATCTCTCTCTCTCTCA 60
consensus_14372#4 ------------------------------------------------------------
consensus_14372#1 ------------------------------------------------------------
consensus_14372#2 ------------------------------------------------------------
consensus_14372#3 ------------------------------------------------------------
consensus_14372#0 CTCTTCTCCCTCTTCTCACCACCAGACGCCATCAAACCCCTACCTCCCGCGGCGGCGGCG 120
consensus_14372#4 ------------------------------------------------------------
consensus_14372#1 ------------------------------------------------------------
consensus_14372#2 ------------------------------------------------------------
consensus_14372#3 ------------------------------------------------------------
consensus_14372#0 GCGGCGGCGGCCGGCGGCGAGCTCCGGACAGACAGAGGAGGGCGCGACGGAGAGGGCGAG 180
consensus_14372#4 ------------------------------------------------------------
consensus_14372#1 ---------------TCTCACCTCGGCGGCGGGCGGCGGCCGGCGGCGAGGTCCGGACAG 45
consensus_14372#2 ------------------------------------------------------------
consensus_14372#3 ------------------------------------------------------------
consensus_14372#0 GAGGGAAGGAGGGAGGGAGGCGACAGGCATGGGGACCCTCGGGCGCGCGATCTACACGGT 240
consensus_14372#4 ------------------------------------------------------------
consensus_14372#1 CGGAGGGAGCAAGCGGGGAGGACGAGGCATGGGGACCCTGGGGCGGGCGATCTACACGGC 105
consensus_14372#2 ------------------------------------------------------------
consensus_14372#3 ------------------------------------------------------------
consensus_14372#0 GGGGAAGTGGATCCGCGGCACGGGGCAGGCCATGGACCGCCTCGGATCCACCATCCAGGG 300
consensus_14372#4 ------------------------------------------------------------
consensus_14372#1 GGGGAAGTGGATCCGCGGCACGGGGCAGGCCATGGACCGCCTCGGATCCACCATCCAGGG 165
consensus_14372#2 ------------------------------------------------------------
consensus_14372#3 ------------------------------------------------------------
consensus_14372#0 CGGCCTCCGCGTCGAGGAGCAGCTTTCAAGGCATCGCACGATCATGAACATATTTGAGAA 360
consensus_14372#4 ------------------------------------------------------------
consensus_14372#1 CGGCCTCCGCGTCGACGAGCAGCTGCCAAGGCATCGCACAATCATGAACATATTTGAGAA 225
consensus_14372#2 ---------------------------------------------------TTCTCAGAC 9
consensus_14372#3 -------------------------------CATCGCACGATCATGAACATATTTGAGAA 29
consensus_14372#0 AGAGCCCAGAGTCCACAAGGATGTTTTTGTTGCTCCCAGTGCAGCTGTGATTGGCGATGT 420
consensus_14372#4 ------------------------------------------------------------
consensus_14372#1 AGAGCCCAGAATCCACAAGGATGTTTTTGTTGCTCCCAGTGCAGCTGTGATTGGTGATAT 285
consensus_14372#2 ACTGATATACGATGCTTACAATCGTTCTTTGTTCCACAACATATCTAATCGTTTGGATAA 69
consensus_14372#3 AGAGCCCAGAGTCCACAAGGATGTTTTTGTTGCTCCCAGTGCAGCTGTGATTGGCGATGT 89
consensus_14372#0 TGAGATCGGACATGGATCCTCAATCTGGTACGGCTCCATTTTAAGAGGTGATGTCAACAG 480
consensus_14372#4 ------------------------------------------------------------
consensus_14372#1 TGAGATTGGACATGGATCCTCAATCTGGTATGGCTCCATTTTAAGAGGTGATGTCAACAG 345
consensus_14372#2 TGGAATTGAGT---GATTCCAAGGTAGAGGTTTAGTCTACATATTTATTTTTCCAAAGAA 126
consensus_14372#3 TGAGATCGGACATGGATCCTCAATCTGGTACGGCTCCATTTTAAGAGGTAAGCTCTTTGT 149
consensus_14372#0 CATTCATATTGGATCTGGATCAAATATACAAGACAATTCCCTTGTACATGTTGCAAAAGC 540
consensus_14372#4 ------------------------------------------------------------
consensus_14372#1 CATTCATATTGGAGTTGGAACAAATATACAAGACAATTCCCTTGTACATGTTTCAAAAGC 405
consensus_14372#2 CAATTACTTTAAAGTTACAATGCATTGATGACATATTTACATGAATCTGTGTAGTTTTTC 186
consensus_14372#3 CAAT-AAACACTAGTATTGATACATGTGCTACTAATAAGCATGGGCTTTGTCTTGATAAT 208
consensus_14372#0 TAACATCAGCGGGAAGGTTCTCCCAACCATAATTGGAAACAATGTTACAATAGGTCATAG 600
consensus_14372#4 ------------------------------------------------------------
consensus_14372#1 TAATATCAGTGGGAAGGTTCTCCCAACCATAATTGGAAACAGTGTTACAATAGGTCACAG 465
consensus_14372#2 TTTCCTTATTTCAAAACCTGTAATTGGGGACTGGAGGATAACCAAAGTACCAAACAACGC 246
consensus_14372#3 TATA--TATCTCACCTTTCTTCTTGGCAACAAGTATGTTTACTGTGCATTTTGTTTTCAG 266
consensus_14372#0 TGCTGTTCTGCACGCATGCACCGTCGAGGATGAAGCTTTTGTTGGTATGGGT-GCCACTC 659
consensus_14372#4 ------------------------------------------------------------
consensus_14372#1 TGCTGTTCTACACGCATGCATCGTCGAGGATGAAGCTTTTGTTGGTATGGGT-GCCACTC 524
consensus_14372#2 TGCATGTTTATACTGATGTCCATATTTTACGTTCCATGCTATTGCTATGAACAGCTGCGA 306
consensus_14372#3 AGTAAACTTGCTTCTAACTGCACTTCATCTATTGCTATGGTATATAGAAAACTGACATAA 326
consensus_14372#0 TGCTTGATGGAGTGGTCGTTGAAAAGCACAGCATGGTTGGTGCAGGATCGCTTGTTAAGC 719
consensus_14372#4 ------------------------------------------------------------
consensus_14372#1 TGCTTGATGGAGTGGTGGTTGAAAAGCACAGCATGGTTGGTGCAGGATCCCTTGTAAAGC 584
consensus_14372#2 GACTTGAATATCTTTTGGTATTTATATTGTATATAACTTAATATATTACATGACTTTATT 366
consensus_14372#3 CTGCCAGTTGTCAGGAGATGCACAGTTTTATCAAAGCACACCATGTTTTCATTGTTAGAC 386
consensus_14372#0 AGAACACAAGGATTCCTTCTGGAG---AGGTCTGGGTCGGTAATCCTGCCAAGTTCCTAA 776
consensus_14372#4 ------------------------------------------------------------
consensus_14372#1 AAAACACCAGGATTCCTTCTGGAG---AGGTCTGGGTTGGTAATCCTGCCAAGTTCCTAA 641
consensus_14372#2 GAACCATATGGTTTCTTGACACTGCT-AGGTCTGGGTCGGTAATCCTGCCAAGTTCCTAA 425
consensus_14372#3 TCTCAATCGACACTTCGCATGAAACTTCAGTTTTTTACCTTTATTCGACGAAGTGTCAAT 446
consensus_14372#0 GAAAGCTTACTGAAGAGGAGATAG--CGTTCATTG--CTCAGTCAGCAACG-AACTACAT 831
consensus_14372#4 ------------------------------------------------------------
consensus_14372#1 GAAAGCTTACTGAAGAGGAGATGG--CGTTCATTG--CACAGTCAGCAACA-AACTATAT 696
consensus_14372#2 GAAAGCTTACTGAAGAGGAGATAG--CGTTCATTG--CTCAGTCAGCAACG-AACTACAT 480
consensus_14372#3 CAAGGTTTATCCTACCGCTAGTAGACTATTTACTGACCTCCGGCAGTAGCACGATTACCG 506
consensus_14372#0 CAATCTGGCCCAAGTCCATGCTGCCGAGAATTCCAAGACCTTCGACGAGATCGAGCTCGA 891
consensus_14372#4 ------------------------------------------------------------
consensus_14372#1 CAATTTGGCTCAAGTCCACGCAGCCGAGAATGCCAAGACCTTCGATGAGATTGAGCTCGA 756
consensus_14372#2 CAATCTGGCCCAAGTCCATGCTGCCGAGAATTCCAAGACCTTCGACGAGATCGAGCTCGA 540
consensus_14372#3 CAACAAATTCGTATTCCAAATTTT---GAACTCCCTGCAGTAATACACGGTTACGTGCGG 563
consensus_14372#0 GAAGATGCTGAGGAAAAAGTATGCCCACAAAGACGAGGAGTATGATTCGATGCTCGGCGT 951
consensus_14372#4 ------------------------------------------------------------
consensus_14372#1 GAAGATGCTGAGGAAGAAGTTTGCGCACAAAGACGAGGAGTACGATTCGATGCTCGGCGT 816
consensus_14372#2 GAAGATGCTGAGGAAAAAGTATGCCCACAAAGACGAGGAGTATGATTCGATGCTCGGCGT 600
consensus_14372#3 TAACCACTGTGTGTCGAAGCTGGAAGAAAAAGAATGCAGGAAAAATTG------------ 611
consensus_14372#0 GGTCCGTGAGATCCCGCCGGAGCTCATCCTCCCGGACAACATCCTCCCAAACAAGGCTCA 1011
consensus_14372#4 ------------------------------------------------------------
consensus_14372#1 GGTCCGTGAGATCCCACCAGAGCTTATCCTCCCGGACAGTATCCTCCCAAACAAGGCTCA 876
consensus_14372#2 GGTCCGTGAGATCCCGCCGGAGCTCATCCTCCCGGACAACATCCTC-------------- 646
consensus_14372#3 ------------------------------------------------------------
consensus_14372#0 GAAGGCTGTTGCTCACTGAATGTTTTGTCAAGCTCCCGCTTGGGAAAAGCTTGGTTTTTT 1071
consensus_14372#4 ------------------------------------------------------------
consensus_14372#1 AAAAGCTGTTGCTCACTGAGTGTTTTCTTAAAGCTCCCGCTTGGGAAGCTTTGCTGTTAT 936
consensus_14372#2 ------------------------------------------------------------
consensus_14372#3 ------------------------------------------------------------
consensus_14372#0 TGTTACGTGTTTTGACCTGGAACAACATTTGACACATGTCTTTTGATCTCATTGTCTGTT 1131
consensus_14372#4 --------------------------------------------GATCTCATTGTCTGTT 16
consensus_14372#1 TACATGTTGACTTG-------------------------TTTATGACAGTTTTGTCTGTC 971
consensus_14372#2 ------------------------------------------------------------
consensus_14372#3 ------------------------------------------------------------
consensus_14372#0 TTTCAAGCCCAATAAGAATTTGGGTCGAGCAT-TGTTTTAGGATCGACCATATACAGTAC 1190
consensus_14372#4 TTTNAAGCCCAATAAGAATTTGGGTCGAGCNT-TGTTTTAGGCTCGACCATNTNCAGTAC 75
consensus_14372#1 CGTAGAGG--AAAAGGAAGTCAATTGGTTCCCCTGCTTTTGACTTGCTTGCTTGATAGAT 1029
consensus_14372#2 ------------------------------------------------------------
consensus_14372#3 ------------------------------------------------------------
consensus_14372#0 CTCTCTTTGCATTACAATGAAGAGCAGTTAATTTGG-GTCACTTTTTACATCTTTACT-G 1248
consensus_14372#4 CTCTCTTTGCATTNCAATGAAGNGCAGTTAATTTGG-GTCNAAAANNNCCNCNCANNAAN 134
consensus_14372#1 GTGAAGTTCAAGTTATTTGATACTAAATAGCTGTAGTGTGAAAAAGTCAGTGAGCTCAGA 1089
consensus_14372#2 ------------------------------------------------------------
consensus_14372#3 ------------------------------------------------------------
consensus_14372#0 AAGTAGAAACGCGTCCTCTGTCTGTGACAGTTTTTTTAAAAA----- 1290
consensus_14372#4 AANNANCNACNANACNAAAAACNAAAAANANNAANNANAAAAAA--- 178
consensus_14372#1 AAGTAGAAATTTTGAGGATTTTCGTGGGTGCAGAACTAATTTATGCA 1136
consensus_14372#2 -----------------------------------------------
consensus_14372#3 -----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||