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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14374#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 2233 fasta sequence
[ACCATCCGTTTCTGCCAAACCAGCAAATTCGGGGACCCATATATCCGAAGTTCTCTCACATCAACTTCATTATCTTCTGTCCCTAATGGACACAATTGCTGGGGTCATAACATATTGGAGAGGAACTATAGGCCTATGCTATATGGGCCTTCTAGATATAGAGCCTTGGGTGTTAGATCTTTTGCATTGCCTGGTTCTTTGCAGGAAATCCCTTTGGTCAGGAGCACATCACTGGCATTGACTAGGTCATGTGACACTTTACTTGCAAATCCTGCTACTGCGCTTGTGGTTCCTGCAATTGGAATAATTGTCTTTGCTTTATGGGGATTCTTGCCTTTAATGAGGGACATTAGAAACCGTTTCGACCATGGAGGCAACTGGAAGAAAAGCCCTACATACTTAATTTCTACCTCGTACCTTCAACCATTGCTTCTATGGACAGGAGCAACACTTATCTGCAGGGCTTTGGATCCAGTTGTGTTGCCTTCAGCAGCAAGCCAAGCAGTTAAAACACGCCTTGTAACTTTTGTGAGATCATTATCAACTGTCCTGGCTATTGCCTATATTCTGACGAGCTTAATTCAGCAGTTACAGAAATTTCTAATGGACATGCGTAACCCCAATGATTCAAGACGTATGGGATTTGACTTCGCAGTGAAAGCTGTTTACACTGGTATTTGGATTGCTGCTATATCTCTCTTTATGGAGTTGCTGGGTTTCAATACCCAAAAGTGGATTACTGCTGGAGGTTTTGGGACTGTGTTGCTTACACTTGCTGGTCGTGAGATCTTTACAAACTTCCTCTCAAGTGTTATGATCAATGCCACACGTCCATTCGTGGTGAATGAATGGATCAATACAAAGATAGATGGTGTTGAAGTCTCTGGTATTGTTGAGCATGTTGGCTGGTGGTCCCCTACAATCATTAGAGGTGATGATAGAGAAGCTATATACATTCCTAACCATAAGTTCACAGTTTCTATTTTGAGAAATAACACTCAGAGGACCCATTGGCGTATTAAGACCTACCTGGCTTTAAGCCACATGGATGCTGCGAAAATTGGTATAATTGTTGCGGACATGAGAAAAGTGTTGGCAAAGAATCCACATATAGAGCAACAGAGGCTGCATAGGAGAGTATTTTTTGAGAAAATTGATCCAAAAACCCAAGCTCTTATGATTTACATATCATGCTTTGTGAAGACATCTCATTTTGAGGAGTATCTCAATGTCCAGGAAGCTGTTATGTTGGATCTTCTTAGAATAGTCGGCCATCATAGGGCAAGGCTTGCCACCCAGATTCGAACAGTTCAGAAATCTTATGGCAATGCAGACATCGATAACATTCCTTTCGGAGAGGAGATGTATAGTCGTGTACGTGGCCGTCCACTTCTGATTGATACCTCTGCAAGGATTAGCGATGACAAGTCTAAGCCTCGTCCAGCATCGCGTGAAGATCATAAAGTCAAGACA-GTCACTTCTGCAGAGGCTAAGTCAGCTTCAGCTGATAATGCTAGTATAAGCAACTCCGAGAAGCAGGAACAGAAAAAATCAGTACCAGAAGATGGTCGCATGAAGAATAGTAAAAATGATCATGCGACAACAACATCGCCATCTTCTCCATGGTCAGAAAATATGGATCCTATTGCATCAACTTCCAAAACTGGTAAAGGAAAAACTCAAGGAGCTGAGGCCACAGAACGAGAAGGAGATGGCGCTGTCTCTGTTGCTAATTCAAAGAAAGAATCGAGACCCGTCTTTGAAGACAACATTGTTCTGGGTTTAGCTCTTGAGGGATCCAAGA-GGACATTACCAATTGATGACGGAATGAACCCTCATCTATCACTTTCTGAAACTGAG-CAAGACACAGTTG-AGGCTGCTTCATCACCGAAGGATAAGAAAGGTCAAG-AAAAAGGTGACCAGAGGAATCTTGAT-AGGT-GATCTGAGTTTAAACCGATTATTTATGCTATATTTGTCACCAAGCCTACCTTTTTTTTGTGCTTGTGCA-AATGCAATCTGTCAAACCTGTCTATGTCAAAGGTATTGATCGTCGCTGATACTATTCAGGAGACGAACCTCCTCAAATGTACTTCTCAGCCATTTGCTATATTAGGCCTGTAAAATC-ACAAGGCCTCTCCTCTCCGTTGAACATATTATTGTACATATCCTGCAGCCTCTGTAACTATCATGGATAAAGCTGACCTGACCTGTGTTGCCTCTTGCAAAAAGCGGC]
[+] EMBL CB633911 [ACCATCCGTTTCTGCCAAACCAGCAAATTCGGGGACCCATATATCCGAAGTTCTCTCACATCAACTTCATTATCTTCTGTCCCTAATGGACACAATTGCTGGGGTCATAACATATTGGAGAGGAACTATAGGCCTATGCTATATGGGCCTTCTAGATATAGAGCCTTGGGTGTTAGATCTTTTGCATTGCCTGGTTCTTTGCAGGAAATCCCTTTGGTCAGGAGCACATCACTGGCATTGACTAGGTCATGTGACACTTTACTTGCAAATCCTGCTAC ]
[+] EMBL CB626980 [ GTTAGATCTTTTGCATTGCCTGTTTCTTTGCAGGAAATCCCTTTGGTCAAGAGCACATCAGTGGCATTGACTAGGTCATGTGACACTTTACTTGCAAATCCTGCTACTGCGCTTGTGGTTCCTGCAATTGGAATAATTGTCTTTGCTTTATGGGGATTCTTGCCTTTAATGAGGGACATTAGAAACCGTTTCGACCATGGAGGCAACTGGAAGAAAAGCCCTACATACTTAATTTCTACCTCGTACCTTCAACCATTGCTTCTATGGACAGGAGCAACACTTATCTGCAGGGCTTTGGATCCAGTTGTGTTGCCTTCAGCAGCAAGCCAAGCAGTTAAAACACGCCTTGTAACTTTTGTGAGATCATTATCAACTGTCCTGGCTATTGCCTATATTCTGACGAGCTTAATTCAGCAGTTACAGAAATTTCTAATGGACATGCGTAACCCCAATGATTCAAGACGTATGGGATTTGACTTCGCAGTGAAAGCTGTTTACACTGGTATTTGGATTGCTGCTATATCTCTCTTTATGGAGTTGCTGGGTTTCAATACCCAAAAGTGGATTACTGCTGGAGGTTTTGGGACTGTGTTGCTTACACTTGCTGGTCGTGAGATCTTTACAAACTTCCTCTCAAGTGTTATGATCAATGCCACACGTCCATTCGTGGTGAATGAATGGATCAATACAAAGATAGATGGTGTTGAAGTCTCTGGTATTGTTGAGCATGTTGGCTGGTGGTCCCCTACAATCATTAGAGGTGATGATAGAGAAGCTATATACATTCCTAACCATAAGTTCACAGTTTCTATTTTGAGAAAT ACACTCAGAGGACCCATTGGCGTATTAAGACCTACCTGGCTTT AGCC ]
[+] EMBL CB662954 [ CACACGTCCATTCGTGGTGAATGAATGGATCAATACAAAGATAGATGGTGTTGAAGTCTCTGGTATTGTTGAGCATGTTGGCTGGTGGTCCCCTACAATCATTAGAGGTGATGATAGAGAAGCTATATACATTCCTAACCATAAGTTCACAGTTTCTATTTTGAGAAATAACACTCAGAGGACCCATTGGCGTATTAAGACCTACCTGGCTTTAAGCCACATGGATGCTGCGAAAATTGGTATAATTGTTGCGGACATGAGAAAAGTGTTGGCAAAGAATCCACATATAGAGCAACAGAGGCTGCATAGGAGAGTATTTTTTGAGAAAATTGATCCAAAAACCCAAGCTCTTATGATTTACATATCATGCTTTGTGAAGACATCTCATTTTGAGGAGTATCTCAATGTCCAGGAAGCTGTTATGTTGGATCTTCTTAGAATAGTCGGCCATCATAGGGCAAGGCTTGCCACCCAGATTCGAACAGTTCAGAAATCTTATGGCAATGCAGACATCGATAACATTCCTTTCGGAGAGGAGATGTATAGTCGTGTACGTGGCCGTCCACTTCTGATTGATACCTCTGCAAGGATTAGCGATGACAAGTCTAAGCCTCGTCCAGCATCGCGTGAAGATCATAAAGTCAAGACA GTCACTTCTGCAGAGGCTAAGTCAGCTTCAGCTGATAATGCTAGTATAAGCAACTCCGAGAAGCAGGAACAGAAAAAATCAGTACCAGAAGATGGTCGCATGAAGAATAGTAAAAATGATCATGCGACAACAACATCGCCATCTTCTCCATGGTCAGAAAATATGGAT ]
[+] EMBL CB662927 [ CACACGTCCATTCGTGGTGAATGAATGGATCAATACAAAGATAGATGGTGTTGAAGTCTCTGGTATTGTTGAGCATGTTGGCTGGTGGTCCCCTACAATCATTAGAGGTGATGATAGAGAAGCTATATACATTCCTAACCATAAGTTCACAGTTTCTATTTTGAGAAATAACACTCAGAGGACCCATTGGCGTATTAAGACCTACCTGGCTTTAAGCCACATGGATGCTGCGAAAATTGGTATAATTGTTGCGGACATGAGAAAAGTGTTGGCAAAGAATCCACATATAGAGCAACAGAGGCTGCATAGGAGAGTATTTTTTGAGAAAATTGATCCAAAAACCCAAGCTCTTATGATTTACATATCATGCTTTGTGAAGACATCTCATTTTGAGGAGTATCTCAATGTCCAGGAAGCTGTTATGTTGGATCTTCTTAGAATAGTCGGCCATCATAGGGCAAGGCTTGCCACCCAGATTCGAACAGTTCAGAAATCTTATGGCAATGCAGACATCGATAACATTCCTTTCGGAGAGGAGATGTATAGTCGTGTACGTGGCCGTCCACTTCTGATTGATACCTCTGCAAGGATTAGCGATGACAAGTCTAAGCCTCGTCCAGCATCGCGTGAAGATCATAAAGTCAAGACA GTCACTTCTGCAGAGGCTAAGTCAGCTTCAGCTGATAATGCTAGTATAAGCAACTCCGAGAAGCAGGAACAGAAAAAATCAGTACCAGAAGATGGTCGCATGAAGAATAGTAAAAATGATCATGCGACAACAACATCGCCATCTTCTCCATGGTCAGAAA ]
[-] EMBL CB662928 [ ATGTTGGATCTTCTTAGAATAGTCGGCCATCATAGGGCAAGGCTTGCCACCCAGATTCGAACAGTTCAGAAATCTTATGGCAATGCAGACATCGATAACATTCCTTTCGGAGAGGAGATGTATAGTCGTGTACGTGGCCGTCCACTTCTGATTGATACCTCTGCAAGGATTAGCGATGACAAGTTTAAGCCTCGTCCAGCATCGCGTGAAGATCATAAAGTCAAGACA GTCACTTCTGCAGAGGCTAAGTCAGCTTCAGCTGATAATGCTAGTATAAGCAACTCCGAGAAGCAGGAACAGAAAAAATCAGTACCAGAAGATGGTCGCATGAAGAATAGTAAAAATGATCATGCGACAACAACATCGCCATCTTCTCCATGGTCAGAAAATATGGATCCTATTGCATCAACTTCCAAAACTGGTAAAGGAAAAACTCAAGGAGCTGAGGCCACAGAACGAGAAGGAGATGGCGCTGTCTCTGTTGCTAATTCAAAGAAAGAATCGAGACCCGTCTTTGAAGACAACATTGTTCTGGGTTTAGCTCTTGAGGGATCCAAGA GGACATTACCAATTGATGACGGAATGAACCCTCATCTATCACTTTCTGAAACTGAG CAAGACACAGTTG AGGCTGCTTCATCACCGAAGGATAAGAAAGGTCAAG AAAAAGGTGACCAGAGGAATCTTGAT AGGT GATCTGAGTTTAAACCGATTATTTATGCTATATTTGTCACCAAGCCTACC TTTTTTTGTGCTTGTGCA AATGCAATCTGTCAAACCTGTCTATGTCAAAGGTATTGATCGTCGCTGATACT ]
[-] EMBL CB626981 [ ATAGGGCAAGGCTGCCCACCCAGATTCGAACAGTTCAGAAATCTTATGGCAATGCAGACATCGATAACA TCCTTTTGGAGAGGAGATGTATAGTCGTGTACGTGGCCGTCCACTTCTGATTGATACCTCTGCAAGGATTAGCGATGACAAGTCTAAGCCTCGTCCAGCATCGCGTGAAGATCATAAAGTCAAGACA GTCACTTCTGCAGAGGCTAAGTCAGCTTCAGCTGATAATGCTAGTATAAGCAACTCCGAGAAGCAGGAACAGAAAAAATCAGTACCAGAAGATGGTCGCATGAAGAATAGTAAAAATGATCATGCGACAACAACATCGCCATCTTCTCCATGGTCAGAAAATATGGATCCTATTGCATCAACTTCCAAAACTGGTAAAGGAAAAACTCAAGGAGCTGAGGCCACAGAACGAGAAGGAGATGGCGCTGTCTCTGTTGCTAATTCAAAGAAAGAATCGAGACCCGTCTTTGAAGACAACATTGTTCTGGGTTTAGCTCTTGAGGGATCCAAGA GGACATTACCAATTGATGACGGAATGAACCCTCATCTATCACTTTCTGAAACTGAG CAAGACACAGTTG AGGCTGCTTCATCACCGAAGGATAAGAAAGGTCAAG AAAAAGGTGACCAGAGGAATCTTGAT AGGT GATCTGAGTTTAAACCGATTATTTATGCTATATTTGTCACCAAGCCTACCTTTTTTTTGTGCTTGTGCA AATGCAATCTGTCAAACCTGTCTATGTCAAAGGTACTGATCGTCGCTGATACTATTCAGGAGACGAACCTCCTCAAATGTACTTCTCAGCCATTTGCTATATTAGGCCTGTAAAATC ]
[-] EMBL CB680426 [ ACATCGATAACATTCCTTTCGGAGAGGAGATGTATAGTCGTGTACGTGGCCGTCCACTTCTGATTGATACCTCTGCAAGGATTAGCGATGACAAGTCTAAGCCTCGTCCAGCATCGCGTGAAGATCATAAAGTCAAGACA GTCACTTCTGCAGAGGCTAAGTCAGCTTCAGCTGATAATGCTAGTATAAGCAACTCCGAGAAGCAGGAACAGAAAAAATCAGTACCAGAAGATGGTCGCATGAAGAATAGTAAAAATGATCATGCGACAACAACATCGCCATCTTCTCCATGGTCAGAAAATATGGATCCTATTGCATCAACTTCCAAAACTGGTAAAGGAAAAACTCAAGGAGCTGAGGCCACAGAACGAGAAGGAGATGGCGCTGTCTCTGTTGCTAATTCAAAGAAAGAATCGAGACCCGTCTTTGAAGACAACATTGTTCTGGGTTTAGCTCTTGAGGGATCCAAGA GGACATTACCAATTGATGACGGAATGAACCCTCATCTATCACTTTCTGAAACTGAG CAAGACACAGTTG AGGCTGCTTCATCACCGAAGGATAAGAAAGGTCAAG AAAAAGGTGACCAGAGGAATCTTGAT AGGT GATCTGAGTTTAAACCGATTATTTATGCTATATTTGTCACCAAGCCTACCTTTTTTTTGTGCTTGTGCA AATGCAATCTGTCAAACCTGTCTATGTCAAAGGTATTGATCGTCGCTGAT ]
[-] EMBL CB629995 [ TAGTCGTGTACGTGGCCGTCCACTTCTGATTGATACCTCTGCAAGGATTAGCGATGACAAGTCTAAGCCTCGTCCAGCATCGCGTGAAGATCATAAAGTCAAGACA GTCACTTCTGCAGAGGCTAAGTCAGCTTCAGCTGATAATGCTAGTATAAGCAACTCCGAGAAGCAGGAACAGAAAAAATCAGTACCAGAAGATGGTCGCATGAAGAATAGTAAAAATGATCATGCGACAACAACATCGCCATCTTCTCCATGGTCAGAAAATATGGATCCTATTGCATCAACTTCCAAAACTGGTAAAGGAAAAACTCAAGGAGCTGAGGCCACAGAACGAGAAGGAGATGGCGCTGTCTCTGTTGCTAATTCAAAGAAAGAATCGAGACCCGTCTTTGAAGACAACATTGTTCTGGGTTTAGCTCTTGAGGGATCCAAGA GGACATTACCAATTGATGACGGAATGAACCCTCATCTATCACTTTCTGAAACTGAG CAAGACACAGTTG AGGCTGCTTCATCCCCGAAGGATAAGAAAGGTCAAG AAAAAGGTGACCAGAGGAATCTTGAT AGGT GATCTGAGTTTAAACCGATTATTTATGCTATATTTGTCACCAAGCCTACCTTTTTTTTGTGCTTGTGCA AATGCAATCTGTCAAACCTGTCTATGTCAAAGGTACTGATCGTCGCTGATACTATTCAGGAGACGAACCTCCGCAAATGTACTTCTCAG ]
[-] EMBL CB680427 [ ATGACAAGTCTAAGCCTCGTCCAGCATCGCGTGAAGATCATAAAGTCAAGACAGGTCACTTCTGCAGAGGCTAAGTCAGCTTCAGCTGATAATGCTAGTATAAGCAACTCCGAGAAGCAGGAACAGAAAAAATCAGTACCAGAAGATGGTCGCATGAAGAATAGTAAAAATGATCATGCGACAACAACATCGCCATCTTCTCCATGGTCAGAAAATATGGATCCTATTGCATCAACTTCCAAAACTGGTAAAGGAAAAACTCAAGGAGCTGAGGCCACAGAACGAGAAGGAGATGGCGCTGTCTCTGTTGCTAATTCAAAGAAAGAATCGAGACCCGTCTTTGAAGCCACCATTGTTCTGGGTTTAGCTCTTGAGGGATCCAAGA GGACATTACCAATTGATGACGGAATGAACCCTCATCTATCACTTTCTGAAACTGAG CAAGACACAGTTG AGGCTGCTTCATCACCGAAGGATAAGAAAGGTCAAG AAAAAGGTGACCAGAGGAATCTTGAT AGGT GATCTGAGTTTAAACCGATTATTTATGCTATATTTGTCACCAAGCCTACCTTTTTTTTGTGCTTGTGCA AATGCAATCTGTCAAACCTGTCTATGTCAAAGGTATTGATCGTCGCTGATACTATTCAGGAGACGAACCTCCTCAAATGTACTAGGCAGCCATTTGCTATATTAG ]
[+] EMBL AU057840 [ GTCTAAGCCTCGTCCAGCATCGCGTGAAGATCATAAAGTCAAGACA GTCACTTCTGCAGAGGCTAAGTCAGCTTCAGCTGATAATGCTAGTATAAGCAACTCCGAGAAGCAGGAACAGAAAAAATCAGTACCAGAAGATGGTCGCATGAAGAATAGTAAAAATGATCATGCGACAACAACATCGCCATCTTCTCCATGGTCAGAAAATATGGATCCTATTGCATCAACTTCCAAAACTGGTAAAGGAAAAACTCAAGGAGCTGAGGCCACAGAACGAGAAGGAGATGGCGCTGTCTCTGTTGCTAATTCAAAGAAAGAATCGAGACCCGTCTTTGAAGACAACATTGTTCTGGGTTTAGCTCTTGAGGGATCCAAGAGGGACATTACCAATTGATGACGGAATGAACCCTCATCTATCACTTTCTGAAACTGAGCCAAGACACAGTTGAAGGCTGCTTCATCACCGAAGGATAAGAAAGGTCAAGAAAAAAGGTGACCAGAGGAATCTTGATAAGGTGGATCTGAGTTTAAACCGNTTATTTATGCTATATTTGTCACCAAGCCTACCTTTTTTTTGTGCTTGTGCA AATGCAATCTGTCAAACCTGTCTATGTCAAAGGTATTGATCGTCGCTGATACTATTCAGGAGACGAACCTCCTCAAATGGACTTCTCAGCCA TTGCTATATTANGCC ]
[-] EMBL CB630134 [ TCAAGACA GTCACTTCTGCAGAGGCTAAGTCAGCTTCAGCTGATAATGCTAGTATAAGCAACTCCGAGAAGCAGGAACAGAAAAAATCAGTACCAGAAGATGGTCGCATGAAGAATAGTAAAAATGATCATGCGACAACAACATCGCCATCTTCTCCATGGTCAGAAAATATGGATCCTATTGCATCAACTTCCAAAACTGGTAAAGGAAAAACTCAAGGAGCTGAGGCCACAGAACGAGAAGGAGATGGCGCTGTCTCTGTTGCTAATTCAAAGAAAGAATCGAGACCCGTCTTTGAAGACAACATTGTTCTGGGTTTAGCTCTTGAGGGATCCAAGA GGACATTACCAATTGATGACGGAATGAACCCTCATCTATCACTTTCTGAAACTGAG CAAGACACAGTTG AGGCTGCTTCATCACCGAAGGATAAGAAAGGTCAAG AAAAAGGTGACCAGAGGAATCTTGAT AGGT GATCTGAGTTTAAACCGATTATTTATGCTATATTTGTCACCAAGCCTACCTTTTTTTTGTGCTTGTGCA AATGCAATCTGTCAAACCTGTCTATGTCAAAGGTACTGATCGTCGCTGATACTATTCAGGAGACGAACCTCCTCAAATGTACTTCTCAGCCATTTGCTATATTAGGCCGGTAAAATC ACAAGGCCTCTCCTCTCCGTTGAACATATTATTGTACATATCCTGCAGCCTCTGTAACTATCATGGATAAAGCTGACCTGACCTG ]
[+] EMBL BI118832 [ TGGTCGCATGAAGAATAGTAAAAATGATCATGCGACAACAACATCGCCATCTTCTCCATGGTCAGAAAATATGGATCCTATTGCATCAACTTCCAAAACTGGTAAAGGAAAAACTCAAGGAGCTGAGGCCACAGAACGAGAAGGAGATGGCGCTGTCTCTGTTGCTAATTCAAAGAAAGAATCGAGACCCGTCTTTGAAGACAACATTGTTCTGGGTTTAGCTCTTGAGGGATCCAAGA GGACATTACCAATTGATGACGGAATGAACCCTCATCTATCACTTTCTGAAACTGAG CAAGACACAGTTG AGGCTGCTTCATCGCCGAAGGATAAGAAAGGTCAAG AAAAAGGTGACCAGAGGAATCTTGAT AGGT GATCTGAGTTTAAACCGATTATTTATGCTATATTTGTCACCAAGCCTACCTTTTTTTTGTGCTTGTGCA AATGCAATCTGTCAAACCTGTCTATGTCAAAGGTATTGATCGTCGCTGATACTATTCAGGAGACGAACCT ]
[-] EMBL AU225605 [ AATGAACCCTCATCTATCACTTTCTGAAACTGAG CAAGACACAGTTG AGGCTGCTTCATCACCGAAGGATAAGAAAGGTCAAG AAAAAGGTGACCAGAGGAATCTTGAT AGGT GATCTGAGTTTAAACCGATTATTTATGCTATATTTGTCACCAAGCCTACCTTTTTTTTGTGCTTGTGCACAATGCAATCTGTCAAACCTGTCTATGTCAAAGGTATTGATCGTCGCTGATACTATTCAGGAGACGAACCTCCTCAAATGTACTTCTCAGCCATTTGCTATATTAGGCCTGTAAAATCAACAAGGCCTCTCCTCTCCGTTCAACATATTATTGTACATATCCTGCAGCCTCTGTAACAATCCTAGATCAAGCTGACCTGACCTGTGTTGCCTCTTGCAAAAAGCGGC]
consensusID : consensus_14374#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 680 fasta sequence
[GGACATGAGAAAAGTGTTGGCAAAGAATCCACATATAGAGCAACAGAGGCTGCATAGGAGAGTATTTTTTGAGAAAATTGATCCAAAAACCCAAGCTCTTATGGTAAATTCTAATTTCTTACATTGAGTAATTCCCTCTTTTGATCTGAATACTAGTGGAGTTGGTCCTTACCAATGGTCAGTATGGCATGTTTTGGTAGCTAGAACCTTCCAGATCTGCCTTATCCAGAGCCTACTTTTTTTTTTCTTTTGGGTATGGTTTACTGTGTTCTTTATGTGCTGTTGAGCTTGATTCTTGTATCCTGCCAGTAGCTGGTATGTCGTAAGGTGATAATGTCAGTAAATTTTGGGACAGCTGTCAAGTAGTAACTAGGGGCATCAAGGGGACCAGGTAGGTTTGGCTCTAGCTCAGTACATGCTCAAGCTAGCTAGACTGGTTGGGGGTTTGAGCGTGGAGCTTGGCTTGATAACAATACAAATATTTTGGACTTCCAACTCAAGTTTATTCGACCTGTAAGTCACTTGTACATGTGTATTCAAAAAGTTTGCCGACACAGTTTTAGCTTAAGTGCGGAAGGGCTTCAGCTTTCCCTGCAAGGCAGTTTGGGCAGACCTTGTATAGCTTGTCGAACCTGAGCCATTTTTAATCAACCTCACTAAGAACTAACCAATGCACTGTG]
[+] EMBL CF303080 [GGACATGAGAAAAGTGTTGGCAAAGAATCCACATATAGAGCAACAGAGGCTGCATAGGAGAGTATTTTTTGAGAAAATTGATCCAAAAACCCAAGCTCTTATGGTAAATTCTAATTTCTTACATTGAGTAATTCCCTCTTTTGATCTGAATACTAGTGGAGTTGGTCCTTACCAATGGTCAGTATGGCATGTTTTGGTAGCTAGAACCTTCCAGATCTGCCTTATCCAGAGCCTACTTTTTTTTTTCTTTTGGGTATGGTTTACTGTGTTCTTTATGTGCTGTTGAGCTTGATTCTTGTATCCTGCCAGTAGCTGGTATGTCGTAAGGTGATAATGTCAGTAAATTTTGGGACAGCTGTCAAGTAGTAACTAGGGGCATCAAGGGGACCAGGTAGGTTTGGCTCTAGCTCAGTACATGCTCAAGCTAGCTAGACTGGTTGGGGGTTTGAGCGTGGAGCTTGGCTTGATAACAATACAAATATTTTGGACTTCCAACTCAAGTTTATTCGACCTGTAAGTCACTTGTACATGTGTATTCAAAAAGTTTGCCGACACAGTTTTAGCTTAAGTGCGGAAGGGCTTCAGCTTTCCCTGCAAGGCAGTTTGGGCAGACCTTGTATAGCTTGTCGAACCTGAGCCATTTTTAATCAACCTCACTAAGAACTAACCAATGCACTGTG]
consensusID : consensus_14374#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence
[GATGGTCGCCATNAAGAATTCGTAAAAATGATCATGCGACAACAACATCGCCATCTTCTCCATGGTCAGAAAATATGGATCCTATTGCATCAACTTCCAAAACTGGTAAAGGAAAAACTCAAGGAGCTGAGGCCACAGAACGAGAAGGAGATGGCGCTGTCTCTGTTGCTAATTCAAAGAAAGAATCGAGACCCGTCTTTGAAGACAACATTGTTCTGGGTTTAGCNCTTGAGGGATCCCAAGAGGACATTACCAATTGATGACGGAATGAACCCTCATCTATCACTTTCTGAAACTGAGCAAGACACAGTTGAGGCTGCTTCATCACCGAAGGATAAGAAAGGTCAAGAAAAAGGTGACCAGAGGAATCTTGATAGGTGATCTGAGTTTAAACCGATTATTTATGCTATATTTGTCACCAAGCCTACCTTTTTTTTGTGCTTGTGCAAATGCAATCTGTCAAACCTGTCTATGTCAAAGGTATTGATCGTCGCTGATACTATTCAGGAGACGAACCTCCTCAAATGTACTTCTCAGCCATTTGCTATATTAGGCCTGTAAAATCACAAGGCCTCTCCTCTCCGTTCAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU057841 [GATGGTCGCCATNAAGAATTCGTAAAAATGATCATGCGACAACAACATCGCCATCTTCTCCATGGTCAGAAAATATGGATCCTATTGCATCAACTTCCAAAACTGGTAAAGGAAAAACTCAAGGAGCTGAGGCCACAGAACGAGAAGGAGATGGCGCTGTCTCTGTTGCTAATTCAAAGAAAGAATCGAGACCCGTCTTTGAAGACAACATTGTTCTGGGTTTAGCNCTTGAGGGATCCCAAGAGGACATTACCAATTGATGACGGAATGAACCCTCATCTATCACTTTCTGAAACTGAGCAAGACACAGTTGAGGCTGCTTCATCACCGAAGGATAAGAAAGGTCAAGAAAAAGGTGACCAGAGGAATCTTGATAGGTGATCTGAGTTTAAACCGATTATTTATGCTATATTTGTCACCAAGCCTACCTTTTTTTTGTGCTTGTGCAAATGCAATCTGTCAAACCTGTCTATGTCAAAGGTATTGATCGTCGCTGATACTATTCAGGAGACGAACCTCCTCAAATGTACTTCTCAGCCATTTGCTATATTAGGCCTGTAAAATCACAAGGCCTCTCCTCTCCGTTCAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_14374#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 333 fasta sequence
[ATTGATGACGGAATGAACCCTCATCTATCACTTTCTGAAACTGAGCAAGACACAGTTGAGGCTGCTTCATCACCGAAGGATAAGAAAGGTCAAGAAAAAGGTGACCAGAGGAATCTTGATAGGTGATCTGAGTTTAAACCGATTATTTATGCTATATTTGTCACCAAGCCTACCTTTTTTTTGTGCTTGTGCAAATGCAATCTGTCAAACCTGTCTATGTCAAAGGTATTGATCGTCGCTGATACTATTCAGGAGACGAACCTCCTCAAATGTACCTCTCAGCCATTTGCTATATTAGGCCTGTNAAATCAAAAAAAAAAAAAAAAAAAAAGG]
[+] EMBL CA766996 [ATTGATGACGGAATGAACCCTCATCTATCACTTTCTGAAACTGAGCAAGACACAGTTGAGGCTGCTTCATCACCGAAGGATAAGAAAGGTCAAGAAAAAGGTGACCAGAGGAATCTTGATAGGTGATCTGAGTTTAAACCGATTATTTATGCTATATTTGTCACCAAGCCTACCTTTTTTTTGTGCTTGTGCAAATGCAATCTGTCAAACCTGTCTATGTCAAAGGTATTGATCGTCGCTGATACTATTCAGGAGACGAACCTCCTCAAATGTACCTCTCAGCCATTTGCTATATTAGGCCTGTNAAATCAAAAAAAAAAAAAAAAAAAAAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14374#2 ------------------------------------------------------------
consensus_14374#3 ------------------------------------------------------------
consensus_14374#0 ACCATCCGTTTCTGCCAAACCAGCAAATTCGGGGACCCATATATCCGAAGTTCTCTCACA 60
consensus_14374#1 ------------------------------------------------------------
consensus_14374#2 ------------------------------------------------------------
consensus_14374#3 ------------------------------------------------------------
consensus_14374#0 TCAACTTCATTATCTTCTGTCCCTAATGGACACAATTGCTGGGGTCATAACATATTGGAG 120
consensus_14374#1 ------------------------------------------------------------
consensus_14374#2 ------------------------------------------------------------
consensus_14374#3 ------------------------------------------------------------
consensus_14374#0 AGGAACTATAGGCCTATGCTATATGGGCCTTCTAGATATAGAGCCTTGGGTGTTAGATCT 180
consensus_14374#1 ------------------------------------------------------------
consensus_14374#2 ------------------------------------------------------------
consensus_14374#3 ------------------------------------------------------------
consensus_14374#0 TTTGCATTGCCTGGTTCTTTGCAGGAAATCCCTTTGGTCAGGAGCACATCACTGGCATTG 240
consensus_14374#1 ------------------------------------------------------------
consensus_14374#2 ------------------------------------------------------------
consensus_14374#3 ------------------------------------------------------------
consensus_14374#0 ACTAGGTCATGTGACACTTTACTTGCAAATCCTGCTACTGCGCTTGTGGTTCCTGCAATT 300
consensus_14374#1 ------------------------------------------------------------
consensus_14374#2 ------------------------------------------------------------
consensus_14374#3 ------------------------------------------------------------
consensus_14374#0 GGAATAATTGTCTTTGCTTTATGGGGATTCTTGCCTTTAATGAGGGACATTAGAAACCGT 360
consensus_14374#1 ------------------------------------------------------------
consensus_14374#2 ------------------------------------------------------------
consensus_14374#3 ------------------------------------------------------------
consensus_14374#0 TTCGACCATGGAGGCAACTGGAAGAAAAGCCCTACATACTTAATTTCTACCTCGTACCTT 420
consensus_14374#1 ------------------------------------------------------------
consensus_14374#2 ------------------------------------------------------------
consensus_14374#3 ------------------------------------------------------------
consensus_14374#0 CAACCATTGCTTCTATGGACAGGAGCAACACTTATCTGCAGGGCTTTGGATCCAGTTGTG 480
consensus_14374#1 ------------------------------------------------------------
consensus_14374#2 ------------------------------------------------------------
consensus_14374#3 ------------------------------------------------------------
consensus_14374#0 TTGCCTTCAGCAGCAAGCCAAGCAGTTAAAACACGCCTTGTAACTTTTGTGAGATCATTA 540
consensus_14374#1 ------------------------------------------------------------
consensus_14374#2 ------------------------------------------------------------
consensus_14374#3 ------------------------------------------------------------
consensus_14374#0 TCAACTGTCCTGGCTATTGCCTATATTCTGACGAGCTTAATTCAGCAGTTACAGAAATTT 600
consensus_14374#1 ------------------------------------------------------------
consensus_14374#2 ------------------------------------------------------------
consensus_14374#3 ------------------------------------------------------------
consensus_14374#0 CTAATGGACATGCGTAACCCCAATGATTCAAGACGTATGGGATTTGACTTCGCAGTGAAA 660
consensus_14374#1 ------------------------------------------------------------
consensus_14374#2 ------------------------------------------------------------
consensus_14374#3 ------------------------------------------------------------
consensus_14374#0 GCTGTTTACACTGGTATTTGGATTGCTGCTATATCTCTCTTTATGGAGTTGCTGGGTTTC 720
consensus_14374#1 ------------------------------------------------------------
consensus_14374#2 ------------------------------------------------------------
consensus_14374#3 ------------------------------------------------------------
consensus_14374#0 AATACCCAAAAGTGGATTACTGCTGGAGGTTTTGGGACTGTGTTGCTTACACTTGCTGGT 780
consensus_14374#1 ------------------------------------------------------------
consensus_14374#2 ------------------------------------------------------------
consensus_14374#3 ------------------------------------------------------------
consensus_14374#0 CGTGAGATCTTTACAAACTTCCTCTCAAGTGTTATGATCAATGCCACACGTCCATTCGTG 840
consensus_14374#1 ------------------------------------------------------------
consensus_14374#2 ------------------------------------------------------------
consensus_14374#3 ------------------------------------------------------------
consensus_14374#0 GTGAATGAATGGATCAATACAAAGATAGATGGTGTTGAAGTCTCTGGTATTGTTGAGCAT 900
consensus_14374#1 ------------------------------------------------------------
consensus_14374#2 ------------------------------------------------------------
consensus_14374#3 ------------------------------------------------------------
consensus_14374#0 GTTGGCTGGTGGTCCCCTACAATCATTAGAGGTGATGATAGAGAAGCTATATACATTCCT 960
consensus_14374#1 ------------------------------------------------------------
consensus_14374#2 ------------------------------------------------------------
consensus_14374#3 ------------------------------------------------------------
consensus_14374#0 AACCATAAGTTCACAGTTTCTATTTTGAGAAATAACACTCAGAGGACCCATTGGCGTATT 1020
consensus_14374#1 ------------------------------------------------------------
consensus_14374#2 ------------------------------------------------------------
consensus_14374#3 ------------------------------------------------------------
consensus_14374#0 AAGACCTACCTGGCTTTAAGCCACATGGATGCTGCGAAAATTGGTATAATTGTTGCGGAC 1080
consensus_14374#1 ------------------------------------------------------------
consensus_14374#2 ------------------------------------------------------------
consensus_14374#3 ------------------------------------------------------------
consensus_14374#0 ATGAGAAAAGTGTTGGCAAAGAATCCACATATAGAGCAACAGAGGCTGCATAGGAGAGTA 1140
consensus_14374#1 ------------------------------------------------------------
consensus_14374#2 ------------------------------------------------------------
consensus_14374#3 ------------------------------------------------------------
consensus_14374#0 TTTTTTGAGAAAATTGATCCAAAAACCCAAGCTCTTATGATTTACATATCATGCTTTGTG 1200
consensus_14374#1 ------------------------------------------------------------
consensus_14374#2 ------------------------------------------------------------
consensus_14374#3 ------------------------------------------------------------
consensus_14374#0 AAGACATCTCATTTTGAGGAGTATCTCAATGTCCAGGAAGCTGTTATGTTGGATCTTCTT 1260
consensus_14374#1 ------------------------------------------------------------
consensus_14374#2 ------------------------------------------------------------
consensus_14374#3 ------------------------------------------------------------
consensus_14374#0 AGAATAGTCGGCCATCATAGGGCAAGGCTTGCCACCCAGATTCGAACAGTTCAGAAATCT 1320
consensus_14374#1 ------------------------------------------------------------
consensus_14374#2 ------------------------------------------------------------
consensus_14374#3 ------------------------------------------------------------
consensus_14374#0 TATGGCAATGCAGACATCGATAACATTCCTTTCGGAGAGGAGATGTATAGTCGTGTACGT 1380
consensus_14374#1 ------------------------------------------------------------
consensus_14374#2 ------------------------------------------------------------
consensus_14374#3 ------------------------------------------------------------
consensus_14374#0 GGCCGTCCACTTCTGATTGATACCTCTGCAAGGATTAGCGATGACAAGTCTAAGCCTCGT 1440
consensus_14374#1 ------------------------------------------------------------
consensus_14374#2 ------------------------------------------------------------
consensus_14374#3 ------------------------------------------------------------
consensus_14374#0 CCAGCATCGCGTGAAGATCATAAAGTCAAGACAGTCACTTCTGCAGAGGCTAAGTCAGCT 1500
consensus_14374#1 ------------------------------------------------------------
consensus_14374#2 ------------------------------------------------------------
consensus_14374#3 ------------------------------------------------------------
consensus_14374#0 TCAGCTGATAATGCTAGTATAAGCAACTCCGAGAAGCAGGAACAGAAAAAATCAGTACCA 1560
consensus_14374#1 ---GGACATGAGAAAAGTGTTGGCAAAGAATCCACATATAGAGCAACAGAGGCTGCATAG 57
consensus_14374#2 ---GATGGTCGCCATNAAGAATTCGTAAAAATGATCATGCGACAACAACATCGCCATCTT 57
consensus_14374#3 ------------------------------------------------------------
consensus_14374#0 GAAGATGGTCGC-ATGAAGAATA-GTAAAAATGATCATGCGACAACAACATCGCCATCTT 1618
consensus_14374#1 GAGAGTATTTTTTGAGAAAATTG-ATCCAAAAACCCAAGCTCTTATGGTAAATTCTAATT 116
consensus_14374#2 CTCCATGGTCAGAAAATATGGATCCTATTGCATCAACTTCCAAAACTGGTAAAGGAAAAA 117
consensus_14374#3 ------------------------------------------------------------
consensus_14374#0 CTCCATGGTCAGAAAATATGGATCCTATTGCATCAACTTCCAAAACTGGTAAAGGAAAAA 1678
consensus_14374#1 TCTTACATTGAGTAATTCCCTCTTTTGATCTGAATACTAGTGGAGTTGGTCC-----TTA 171
consensus_14374#2 CTCAAGGAGCTGAGGCCACAGAACGAGAAGGAGATGGCGCTGTCTCTGTTGCTAATTCAA 177
consensus_14374#3 ------------------------------------------------------------
consensus_14374#0 CTCAAGGAGCTGAGGCCACAGAACGAGAAGGAGATGGCGCTGTCTCTGTTGCTAATTCAA 1738
consensus_14374#1 CCAATGGTCAGTATGGCATGTTTTGGTAGCTAGAACCTTCCAGATCTGC--CTTATCCAG 229
consensus_14374#2 AGAAAGAATCGAGACCCGTCTTTGA---AGACAACATTGTTCTGGGTTTAGCNCTTGAGG 234
consensus_14374#3 ------------------------------------------------------------
consensus_14374#0 AGAAAGAATCGAGACCCGTCTTTGA---AGACAACATTGTTCTGGGTTTAGCTCTTGAGG 1795
consensus_14374#1 AGCCTACTTTTTTTTTTCTTTTGGGTATGGTTTACTGTGTTCTTTATGT-GCTGTTGAGC 288
consensus_14374#2 --GATCCCAAGAGGACATTACCAATTG--ATGACGGAATGAACCCTCATCTATCACTTTC 290
consensus_14374#3 -----------------------ATTG--ATGACGGAATGAACCCTCATCTATCACTTTC 35
consensus_14374#0 --GATCC-AAGAGGACATTACCAATTG--ATGACGGAATGAACCCTCATCTATCACTTTC 1850
consensus_14374#1 TTGATTCTTGTATCCTGCCAGTAGCTGGTATGTCGTAAGGTGATAATGTCAGTAAATTTT 348
** *** ** ** * ** * * ***
consensus_14374#2 TGAA-ACTGAGCAAGACACAGTTGAGGCTGCTTCATCACCGAAGGATAAGAAAGGTCAAG 349
consensus_14374#3 TGAA-ACTGAGCAAGACACAGTTGAGGCTGCTTCATCACCGAAGGATAAGAAAGGTCAAG 94
consensus_14374#0 TGAA-ACTGAGCAAGACACAGTTGAGGCTGCTTCATCACCGAAGGATAAGAAAGGTCAAG 1909
consensus_14374#1 GGGACAGCTGTCAAGTAGTAACTAGGGG-----CATCA--AGGGGACCAGGTAGGTTTGG 401
* * * **** * * ** ***** *** ** **** *
consensus_14374#2 AAAAAGGTGACCAGAGGAATCTTGATAGGTGATCTGAGTTTAAACCGATTATTTATGCTA 409
consensus_14374#3 AAAAAGGTGACCAGAGGAATCTTGATAGGTGATCTGAGTTTAAACCGATTATTTATGCTA 154
consensus_14374#0 AAAAAGGTGACCAGAGGAATCTTGATAGGTGATCTGAGTTTAAACCGATTATTTATGCTA 1969
consensus_14374#1 CTCTAGCTCAGTACATGC-TCAAGCTAGCTAGACTGGTTGGGGGTTTGAGCGTGGAGCTT 460
** * * * * * ** * *** * *** * * ***
consensus_14374#2 TATTTGTCACCAAGCCTACCTTTTT----TTTGTGCTTGTGCAAATGCAATCTGTCAA-- 463
consensus_14374#3 TATTTGTCACCAAGCCTACCTTTTT----TTTGTGCTTGTGCAAATGCAATCTGTCAA-- 208
consensus_14374#0 TATTTGTCACCAAGCCTACCTTTTT----TTTGTGCTTGTGCAAATGCAATCTGTCAA-- 2023
consensus_14374#1 GGCTTGATAACAATACAAATATTTTGGACTTCCAACTCAAGTTTATTCGACCTGTAAGTC 520
*** * *** * * **** ** ** * ** * * **** *
consensus_14374#2 ACCTGTCTATGT----CAAAGGTATTGATCGTCGCTGATACTATTCAGGAGACGAACCTC 519
consensus_14374#3 ACCTGTCTATGT----CAAAGGTATTGATCGTCGCTGATACTATTCAGGAGACGAACCTC 264
consensus_14374#0 ACCTGTCTATGT----CAAAGGTATTGATCGTCGCTGATACTATTCAGGAGACGAACCTC 2079
consensus_14374#1 ACTTGTACATGTGTATTCAAAAAGTTTGCCGACACAGTTTTAGCTTAAGTGCGGAAGGGC 580
** *** **** ** ** ** * * * * * * * * *** *
consensus_14374#2 CTCAAATGTACTTCTCAGCCATTT-------GCTATATTAGGCCTGTAAAATCACAAGGC 572
consensus_14374#3 CTCAAATGTACCTCTCAGCCATTT-------GCTATATTAGGCCTGTNAAATCAAAA--- 314
consensus_14374#0 CTCAAATGTACTTCTCAGCCATTT-------GCTATATTAGGCCTGTAAAATCACAAGGC 2132
consensus_14374#1 TTCAGCTTTCCCTGCAAGGCAGTTTGGGCAGACCTTGTATAGCTTGTCGAACCTGAGCCA 640
*** * * * * ** ** ** * * * ** *** ** * *
consensus_14374#2 CTCTCCTCTCCGTTCAAAAAAAAAAAAAAAAAAAAAAAA--------------------- 611
consensus_14374#3 ---------------AAAAAAAAAAAAAAAAAGG-------------------------- 333
consensus_14374#0 CTCTCCTCTCCGTTGAACATATTATTGTACATATCCTGCAGCCTCTGTAACTATCATGGA 2192
consensus_14374#1 TTTTTAATCAACCTCACTAAGAACTAACCAATGCACTGTG-------------------- 680
* * *
consensus_14374#2 -----------------------------------------
consensus_14374#3 -----------------------------------------
consensus_14374#0 TAAAGCTGACCTGACCTGTGTTGCCTCTTGCAAAAAGCGGC 2233
consensus_14374#1 -----------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||