These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14379#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 1650 fasta sequence [CGCGGTGACGAGACGACGCGAGTAGTGCGAGGTGGAGAAGACGAGCCGACACCACCACCACCACCACCACCACGAGAGGAGGAAGCCGCGGGTCTCCTCGTCTTCTCCTCTCTCTCTCTCCTCAACCAGCTGTCTCGCGGTCGCCGGCGGCGGTG-AGGGGAGGAAGCGGGGCTGCCTCGCGCGGCGGGAGGTCTCCGGAGAGGGAGGGGTGTCGTGCTGATTTGGGGGGCTGCGGCGGTGTCGGCGGCGATGGGGTGGGCTTCCTGCTGCAAGGGGGTGGACGGGGTTCTACCTGGCCGGAGGAAGAAGAAGAAGGAGACGACATGGCGGATCTTCTCGCTGAAGGAGCTACAGTCAGCGACGAACAATTTCAACTATGACAACAAGC-TTGGTGAGGGTGGGTTTGGCAGCGTCTAC-TGGGGCCAGCTCTGGGATGGATCAC-AGATTGCGG-TGAAAAGGCTCAAGAG-TTGGAGCAACAAAGCTGAAACTGAATTTGCAATTGAGGTGGAGGTTTTGGCGACAGTGAGACACAAGAGCCTGTTGAGCTTACGTGGCTATTGTGCCGAAGGCCAAGAACGCCTGATAGTCTACGATTATATGCCAAACCTGAGCTTGCACTCCCACCTTCATGGACAGCATGCAGCTGAATGCCATCTTGGTTGGGAACGAAGAATGAAGATCGCTATTGATTCTGCAGAAGGGATTGCATATCTTCATCACCAAGCGACACCACATATCATTCATCGGGATATCAAGTCAAGCAATGTTCTGTTGGACAAGAATTTCCAAGCACGGGTTGCCGATTTTGGTTTTGCAAAGCTCATTCCAGATGGTGCAACCCATGTCACTACAAAGGTGAAGGGTACACTCGGTTATCTTGCACCGGAATACGCCATGCTTGGGAAGGCCTCTGAAAGCTGTGATGTCTTCAGCTTTGGAGTACTGCTGCTAGAGCTTGCCAGTGGAAAGAGGCCAGTTGAGAAGCTAAACCCCACTACGAAGCTAACTATCAC-GGAGTGGGCACTTCCACTTGCCCGTGACAAAAAGTT-CAAGGAAATTGCTGATCCAAAG-CT-CAA-GGATGTCTTC-GT-CGAGGCTGAACTG-AAGCGAATGGTGCTTGTT-GGGCTTGCATGCAGTCAGAACAAACAGGAACAGAGGCCGATAATGTCTGAAGTCGTTGAGCTGCTCAAGGGAGAATCTGCTGAGAAGCTTTCCAACTTGGAGAATGATGAGATG-TTCAAGCCTGATCTGACCAGCTCCTTCCAGGACTCATCTCATTCGTCTCATCCTGATAGTTCAGACTGCAT-CACAGAAGAGAAGAACTCAAAAGCAGATACAATAGACGAGGCAGTTGATTCAAGTGAGACAGTACCTTCAGCTAGGTAGTTTGATGCATAGAATTATAAGTTATCTGTCATTCATCAGCAGGAGTTATTGGTTTCCTT-CCGTGGAGCATTGTGTGTTTACCTCTGCATGCGTGTTTATGCCTTGTTTACCGGCAGGTTTGGGTGCTTCCCTTGTCATCTCACAGATATACTTATCTGTGTGTATGGTTAATTGTTACAATCTGTTTTCGGTATGGTTGTACCATGGCTTGTAAAATTCTGCATATCTGGTGCTGATCCAAAGTTAACATGTTGTTCCCAAAAAAAA] [+] EMBL AK068056 [CGCGGTGACGAGACGACGCGAGTAGTGCGAGGTGGAGAAGACGAGCCGACACCACCACCACCACCACCACCACGAGAGGAGGAAGCCGCGGGTCTCCTCGTCTTCTCCTCTCTCTCTCTCCTCAACCAGCTGTCTCGCGGTCGCCGGCGGCGGTG AGGGGAGGAAGCGGGGCTGCCTCGCGCGGCGGGAGGTCTCCGGAGAGGGAGGGGTGTCGTGCTGATTTGGGGGGCTGCGGCGGTGTCGGCGGCGATGGGGTGGGCTTCCTGCTGCAAGGGGGTGGACGGGGTTCTACCTGGCCGGAGGAAGAAGAAGAAGGAGACGACATGGCGGATCTTCTCGCTGAAGGAGCTACAGTCAGCGACGAACAATTTCAACTATGACAACAAGC TTGGTGAGGGTGGGTTTGGCAGCGTCTAC TGGGGCCAGCTCTGGGATGGATCAC AGATTGCGG TGAAAAGGCTCAAGAG TTGGAGCAACAAAGCTGAAACTGAATTTGCAATTGAGGTGGAGGTTTTGGCGACAGTGAGACACAAGAGCCTGTTGAGCTTACGTGGCTATTGTGCCGAAGGCCAAGAACGCCTGATAGTCTACGATTATATGCCAAACCTGAGCTTGCACTCCCACCTTCATGGACAGCATGCAGCTGAATGCCATCTTGGTTGGGAACGAAGAATGAAGATCGCTATTGATTCTGCAGAAGGGATTGCATATCTTCATCACCAAGCGACACCACATATCATTCATCGGGATATCAAGTCAAGCAATGTTCTGTTGGACAAGAATTTCCAAGCACGGGTTGCCGATTTTGGTTTTGCAAAGCTCATTCCAGATGGTGCAACCCATGTCACTACAAAGGTGAAGGGTACACTCGGTTATCTTGCACCGGAATACGCCATGCTTGGGAAGGCCTCTGAAAGCTGTGATGTCTTCAGCTTTGGAGTACTGCTGCTAGAGCTTGCCAGTGGAAAGAGGCCAGTTGAGAAGCTAAACCCCACTACGAAGCTAACTATCAC GGAGTGGGCACTTCCACTTGCCCGTGACAAAAAGTT CAAGGAAATTGCTGATCCAAAG CT CAA GGATGTCTTC GT CGAGGCTGAACTG AAGCGAATGGTGCTTGTT GGGCTTGCATGCAGTCAGAACAAACAGGAACAGAGGCCGATAATGTCTGAAGTCGTTGAGCTGCTCAAGGGAGAATCTGCTGAGAAGCTTTCCAACTTGGAGAATGATGAGATG TTCAAGCCTGATCTGACCAGCTCCTTCCAGGACTCATCTCATTCGTCTCATCCTGATAGTTCAGACTGCAT CACAGAAGAGAAGAACTCAAAAGCAGATACAATAGACGAGGCAGTTGATTCAAGTGAGACAGTACCTTCAGCTAGGTAGTTTGATGCATAGAATTATAAGTTATCTGTCATTCATCAGCAGGAGTTATTGGTTTCCTT CCGTGGAGCATTGTGTGTTTACCTCTGCATGCGTGTTTATGCCTTGTTTACCGGCAGGTTTGGGTGCTTCCCTTGTCATCTCACAGATATACTTATCTGTGTGTATGGTTAATTGTTACAATCTGTTTTCGGTATGGTTGTACCATGGCTTGTAAAATTCTGCATATCTGGTGCTGATCCAAAGTTAACA ] [+] EMBL AK099031 [ CGAGGTGGAGAAGACGAGCCGACACCACCACCACCACCACCACCACGAGAGGAGGAAGCCGCGGGTCTCCTCGTCTTCTCCTCTCTCTCTCTCCTCAACCAGCTGTCTCGCGGTCGCCGGCGGCGGTG AGGGGAGGAAGCGGGGCTGCCTCGCGCGGCGGGAGGTCTCCGGAGAGGGAGGGGTGTCGTGCTGATTTGGGGGGCTGCGGCGGTGTCGGCGGCGATGGGGTGGGCTTCCTGCTGCAAGGGGGTGGACGGGGTTCTACCTGGCCGGAGGAAGAAGAAGAAGGAGACGACATGGCGGATCTTCTCGCTGAAGGAGCTACAGTCAGCGACGAACAATTTCAACTATGACAACAAGC TTGGTGAGGGTGGGTTTGGCAGCGTCTAC TGGGGCCAGCTCTGGGATGGATCAC AGATTGCGG TGAAAAGGCTCAAGAG TTGGAGCAACAAAGCTGAAACTGAATTTGCAATTGAGGTGGAGGTTTTGGCGACAGTGAGACACAAGAGCCTGTTGAGCTTACGTGGCTATTGTGCCGAAGGCCAAGAACGCCTGATAGTCTACGATTATATGCCAAACCTGAGCTTGCACTCCCACCTTCATGGACAGCATGCAGCTGAATGCCATCTTGGTTGGGAACGAAGAATGAAGATCGCTATTGATTCTGCAGAAGGGATTGCATATCTTCATCACCAAGCGACACCACATATCATTCATCGGGATATCAAGTCAAGCAATGTTCTGTTGGACAAGAATTTCCAAGCACGGGTTGCCGATTTTGGTTTTGCAAAGCTCATTCCAGATGGTGCAACCCATGTCACTACAAAGGTGAAGGGTACACTCGGTTATCTTGCACCGGAATACGCCATGCTTGGGAAGGCCTCTGAAAGCTGTGATGTCTTCAGCTTTGGAGTACTGCTGCTAGAGCTTGCCAGTGGAAAGAGGCCAGTTGAGAAGCTAAACCCCACTACGAAGCTAACTATCAC GGAGTGGGCACTTCCACTTGCCCGTGACAAAAAGTT CAAGGAAATTGCTGATCCAAAG CT CAA GGATGTCTTC GT CGAGGCTGAACTG AAGCGAATGGTGCTTGTT GGGCTTGCATGCAGTCAGAACAAACAGGAACAGAGGCCGATAATGTCTGAAGTCGTTGAGCTGCTCAAGGGAGAATCTGCTGAGAAGCTTTCCAACTTGGAGAATGATGAGATG TTCAAGCCTGATCTGACCAGCTCCTTCCAGGACTCATCTCATTCGTCTCATCCTGATAGTTCAGACTGCAT CACAGAAGAGAAGAACTCAAAAGCAGATACAATAGACGAGGCAGTTGATTCAAGTGAGACAGTACCTTCAGCTAGGTAGTTTGATGCATAGAATTATAAGTTATCTGTCATTCATCAGCAGGAGTTATTGGTTTCCTT CCGTGGAGCATTGTGTGTTTACCTCTGCATGCGTGTTTATGCCTTGTTTACCGGCAGGTTTGGGTGCTTCCCTTGTCATCTCACAGATATACTTATCTGTGTGTATGGTTAATTGTTACAATCTGTTTTCGGTATGGTTGTACCATGGCTTGTAAAATTCTGCATATCTGGTGCTGATCCAAAGTTAACA ] [+] EMBL CA755355 [ GCCGACACCACCACCACCACCACCACCACGAGAGGAGGAAGCCGCGGGTCTCCTCGTCTTCTCCTCTCTCTCTCTCCTCAACCAGCTGTCTCGCGGTCGCCGGCGGCGGTG AGGGGAGGAAGCGGGGCTGCCTCGCGCGGCGGGAGGTCTCCGGAGAGGGAGGGGTGTCGTGCTGATTTGGGGGGCTGCGGCGGTGTCGGCGGCGATGGGGTGGGCTTCCTGCTGCAAGGGGGTGGACGGGGTTCTACCTGGCCGGAGGAAGAAGAAGAAGGAGACGACATGGCGGATCTTCTCGCTGAAGGAGCTACAGTCAGCGACGAACAATTTCAACTATGACAACAAGC TTGGTGAGGGTGGGTTTGGCAGCGTCTAC TGGGGCCAGCTCTGGGATGGATCAC AGATTGCGG TGAAAAGGCTCAAGAG TTGGAGCAACAAAGCTGAAACTGAATTTGCAATTGAGGTGGAGGTTTTGGCGACAGTGAGACACAAGAGCCTGTTGAGCTTACGTGGCTATTGTGCCGAAGGCCAAGAACGCCTGATAGGCTACGATTATATGCCAAACCTGAGCTTGCACTCCCACCTTCATGGACAGCATGAAGGTGA ] [+] EMBL C93433 [ CCACCACCACCACGAGAGGAGGAAGCCGCGGGTCTCCTCGTCTTCTCCTCTCTCTCTCTCCTCAACCAGCTGTCTCGCGGTCGCCGGCGG GTNGNAGGGGAGGAAGCGGGGCTGCCTCGCGCGGCGGGAGGTCTCCGGAGAGGGAGGGGTGTCGTGCTGATTTGGGGGGCTGCGGCGGTGTCGGCGGCGATGGGGTGGGCTTCCTGCTGCAAGGGGGTGGACGGGGTTCTACCTGGCCGGA GAAGAAGAAGAAGGAGACGACATGGCGGATCTTCTCGCTGAAGGAGCTACAGTCAGCGACGAACAATTTCAACTATGACAACAAGCTTTNGTGAGGGTTGGTTTNGCAGCGTCTACTTGGGGCCAGCTCTNGGATGGATCACAAGATTGCGGTTNAAAAGGCTCAAGAGTTTGGAGCAACAAAGCTGAAACTna ] [+] EMBL AU058428 [ CCACCACCACGAGAGGAGGAAGCCGCGGGTCTCCTCGTCTTCTCCTCTCTCTCTCTCCTCAACCAGCTGTCTCGCGGTCGCCGGCGGGGGTG AGGGGAGGAAGCGGGGCTGCCTCGCGCGGCGGGAGGTCTCCGGAGAGGGAGGGGTGTCGTGCTGATTTGGGGGGCTGCGGCGGTGTCGGCGGCGATGGGGTGGGCTTCTTGCTGCAAAGGGGTGGACGGGGTTCTACCTNGCCGGAGGAAGAAGAAGAAGGAGACGACATGGCGGATCTTCTCGCTGAAGGAGCTACA TCAGCGACGAACAATTTCAACTATGACAACAA C TTGGTGANGGTGGG TTGGCA CG CTAC TGGGGCCA CTCTGGGAT GATCA ] [+] EMBL AU095049 [ CACCACCACGAGAGGAGGAAGCCGCGGGTCTCCTCGTCTTCTCCTCTCTCTCTCTCCTCAACCAGCTGTCTCGCGGTCGCCGGCGGNGTTG AGGGGAGGAAGCGGGGCTGCCTCGCGCGGCGGGAGGTCTCCGGAGAGGGAGGGGTGTCGTGCTGATTTGGGGGGCTGCGGCGGTGTCGGCGGCGATGGGGTGGGCTTCTTGCTGCAAGGGGGTGGACGGGGTTCTACCTGGCCGGAGGAAGAAGAAGAAGGAGACGACATGGCGGA ] [+] EMBL C22530 [ TCTCGCTGAAGGAGCTACAGTCAGCGACGAACAATTTCAACTATGACAACAAGC TTGGTGAGGGTGGGTTTGGCAGCGTCTAC TGGGGCCAGCTCTGGGATGGATCAC AGATTGCGG TGAAAAGGCTCAAGAG TTGGAGCAACAAAGCTGAAACTGAATTTGCAATTGAGGTGGAGGTTTTGGCGACAGTGAGACACAAGAGCCTGTTGAGCTTACGTGGCTATTGTGCCGAAGG CAAGAACGCCTGATAGTCTACGATTATATGCCAAACCTGAGCTTGCACTCCCACCTTCATGGACAGCATGCAGCTGAATGCCATCTTGGTTGGGAACGAAGAATGAAGATCGCTATTGATTCTGCAGAAGGGATTGCATATCTTCATCACCAAGCGACACCACATATCATTCATCGGGATATCAAGTCAAGCAATGTTCTGTTGGACAA ] [+] EMBL C22536 [ TCTCGCTGAAGGAGCTACAGTCAGCGACGAACAATTTCAACTATGACAACAAGC TTGGTGAGGGTGGGTTTGGCAGCGTCTAC TGGGGCCAGCTCTGGGATGGATCAC AGATTGCGG TGAAAAGGCTCAAGAG TTGGAGCAACAAAGCTGAAACTGAATTTGCAATTGAGGTGGAGGTTTTGGCGACAGTGAGACACAAGAGCCTGTTGAGCTTACGTGGCTATTGTGCCGAAG CAAGAACGCCTGATAGTCTACGATTATATGCCAAACCTGAGCTTGCACTCCCACCTTCATGGACAGCATGCAGCTGAATGCCATCTTGGTTGGGAACGAAGAATGAAGATCGCTATTGATTCTGCAGAAGGGATTGCATATCTTCATCACCAAGCGACACCACATATCATTCATCGGGATATCAAGTCAAGCAATGTTCTGTTGGACAAGAATTT ] [+] EMBL AU030383 [ nGCCCATTTAGGAGCTNANCCCNNCTACGAAGCTAACTATCACNGGNGTGGNCACTTCCACTTGCCCGTGACAAAAGTTT CANGGAAATTGCTGATCCAATN CT CAA GGATNTCTTCNGTNCGAGGCTGANCTGAAAGCGAATGGTGCTTGTT GGGCTTGCATGCAGTCAGAACAAACAGGAACAGAGGCCGATAATGTCTGAAGTCGTTGAGCTGCTCAAGGGAGAATCTGCTGAGAAGCTTTCCAACTTGGAGAATGATGAGATG TTCAAGCCTGATCTGACCAGCTCCTTCCAGGACTCATCTCATTCGTCTCATCCTGATAGTTCAGACTGCAT CACAGAAGAGAAGAACTCAAAAGCAGATACAATAGACGAGGCAGTTGATTCAAGTGAGACAGTACCTTCAGCTAGGTAGTTTGATGCATAGAATTATAAGTTATCTGTCATTCATCAGCAGGAGTTATTGGTTTCCTT CCGTGGAGCATTGTGTGTTTACCTCTGCATGCGTGTTTATGCCTTGTTTACCGGCAGGTTTGGGTGCTTCCCTTGTCATCTCACAGATATACTTATCTGTGTGTATGGTTAATTGTTACAATCTGTTTTCGGTATGGTTGTACCATGGCTTGTAAAATTCTGCATATCTGGTGCTGATCCAAAGTTAACATGTTGTTCCCAAAAAAAA] [+] EMBL AU095082 [ tcCCACTTGCCCTTGACAAAAAGTTCCAAGGAAATTGCTGACCCAAAGCCTCCAAGGGATGTCTTC GT CGAGGCTGAACTG AACCGAATGGTGCTTGTTGGGGCTTGCATGCAGTCAGAACAAACAGGAACAGAGCCCGATAATGTCTGAAGTCGTTGAGCTGCTCAAGGGAGAATCTGCTGAGAAGCTTTCCAACTTGGAGAATGATGAGATG TTCAAGCCTGATCTGACCAGCTCCTTCCAGGACTCATCTCATTCGTCTCATCCTGATAGTTCAGACTGCATCCACAGAAGAGAAGAACTCAAAAGCAGATACAATAGACGAGGCAGTTGATTCAAGTGAGACAGTACCTTCAGCTAGGTAGTTTGATGCATAGAATTATAAGTTATCTGTCATTCATCAGCAGGAGTTATTGGTTTCCTT CCGTGGAGCATTGTGTGTTTACCTCTGCATGCGTGTTTATGCCTTGTTTACCGGCAGGTTTGGGTGCTTCCCTTGTCATCTCACAGATATACTTATCTGTGTGTATGGTTAATTGTTACAATCTGTTTTCGGTATGGTTGTACCATGGCTTGTAAAATTCTGCATATCTGGTGCTGATCCAAAGTTAACATGTTGTTCCCAAAAAAAA] [+] EMBL C22537 [ CAGGAACAGAGGCCGATAATGTCNGAAGTCGTTGAGCTGCTCAAGGGAGAATCTGNTGAGAAGCTTTCCAACTTGGAGAATGATGAGANGTTTCAAGCCTGATNTGACCAGCTCCTTNCAGGACTCATCTCATTCGTCTCATCCNGATAGTTCAGACTGCAT CACAGAAGAGAAGAACTCAAAAGCAGATACAATAGACGAGGCAGTTGATTCAAGTGAGACAGTACCTTCAGCTAGGTAGTTTGATGCATAGAATTATAAGTTATCTGTCATTCATCAGCAGGAGTTATTGGTTTCCTT CCGTGGAGCATTGTGTGTTTACCTCTGCATGCGTGTTTATGCCTTGTTTACCGGCAGGTTTGGGTGCTTCCCTTGTCATCTCACAGATATACTTATCTGTGTGTATGGTTAATTGTTACAATCTGTTTTCGGTATGGTTGTACCATGGCTTGTAAAATTCTGCATATCTGGTGCTGATCCAAGGCCNACATGTTnnca ] [+] EMBL C22531 [ GAACAGAGGCCGATAATGTCTGAAGTCGTTGAGCTGCTCAAGGGAGAATCTGCNGAGAAGCTTTCCAACTTGGAGAATGATGAGATGTTTCAAGCCTGATCTGACCAGCTCCTTCCAGGACTCATCTCATTCGTCTCATCCTGATAGTTCAGACTGCAT CACAGAAGAGAAGAACTCAAAAGCAGATACAATAGACGAGGCAGTTGATTCAAGTGAGACAGTACCTTCAGCTAGGTAGTTTGATGCATAGAATTATAAGTTATCTGTCATTCATCAGCAGGAGTTATTGGTTTCCTT CCGTGGAGCATTGTGTGTTTACCTCTGCATGCGTGTTTATGCCTTGTTTACCGGCAGGTTTGGGTGCTTCCCTTGTCATCTCACAGATATACTTATCTGTGTGTATGGTTAATTGTTACAATCTGTTTTCGGTATGGTTGTACCATGGCTTGTAAAATTCTGCATATNTNGTGCTGATCCAAAG CAACAT ] [+] EMBL OSS1726A [ ACAGAGGCCGATAATGTCTGAAGTCGTTGAGCTGCTCAAGGGAGAATCTGCTGAGAAGCTTTCCAACTTGGAGAATGATGAGATG TTCAAGCCTGATCTGACCAGCTCCTTCCAGGACTCATCTCATTCGTCTCATCCTGATAGTTCAGACTGCAT CACAGAAGAGAAGAACTCAAAAGCAGATACAATAGACGAGGCAGTTGATTCAAGTGAGACAGTACCTTCAGCTAGGTAGTTTGATGCATAGAATTATAAGTTATCTGTCATTCATCAGCAGGAGTTATTGGTTTCCTT CCGTGGAGCATTGTGTGTTTACCTCTGCATGCGTGTTTATGCCTTGTTTACCGGCAGG TTGGGTGCTTNCCTTGTCATCTCACAGATATACTTATCTGTGTG ATGG TAATTGTTACAA ] [+] EMBL OSS1995A [ ACAGAGGCCGATAATGTCTGAAGTCGTTGAGCTGCTCAAGGGAGAATCTGCTGAGAAGCTTTCCAACTTGGAGAATGATGAGATG TTCAAGCCTGATCTGACCAGCTCCTTCCAGGACTCATCTCATTCGTCTCATCCTGATAGTTCAGACTGCAT CACAGAAGAGAAGAACTCAAAAGCAGATACAATAGACGAGGCAGTTGATTCAAGTGAGACAGTACCTTCAGCTAGGTAGTTTGATGCATAGAATTATAAGTTATCTGTCATTCATCAGCAGGAGTTATTGGTTTCCTT CCGTGGAGCATTGTGTGTTTACCTCTGCATGCGTGTTTATGCCTTG ] [+] EMBL AU222495 [ GTTGAGCTGCTCAAGGGAGAATCTGCTGAGAAGCTTTNCAACTTGGAGAATGATGAGATG TTCAAGCCTGATCTGACCAGCTCCTTCCAGGACTCATCTCATTCGTCTCATCCTGATAGTTCAGACTGCAT CACAGAAGAGAAGAACTCAAAAGCAGATACAATAGACGAGGCAGTTGATTCAAGTGAGACAGTACCTTCAGCTAGGTAGTTTGATGCATAGAATTATAAGTTATCTGTCATTCATCAGCAGGAGTTATTGGTTTCCTTNCCGTGGAGCATTGTGTGTTTACCTCTGCATGCGTGTTTATGCCTTGTTTACCGGCAGGTTTGGGTGCTTCCCTTGTCATCTCACAGATATACTTATCTGTGTGTATGGTTAATTGTTACAATCTGTTTTCGGTATGGTTGTACCATGGCTTGTAAAATTCTGCAaaaa ] consensusID : consensus_14379#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 145 fasta sequence [TGCGTGTTTATGCCCTTGTTTGACCGGCACGGTTTGGGTGCTGTGCCCTGGTGCATCTGCACAGATATACTTATCTGGTGTGTGATGGTTAATTGGTTGACATCTGTTTTCGGTATGGTTGGTACCACTGGCTTGTAAAATTCTG] [+] EMBL BI808069 [TGCGTGTTTATGCCCTTGTTTGACCGGCACGGTTTGGGTGCTGTGCCCTGGTGCATCTGCACAGATATACTTATCTGGTGTGTGATGGTTAATTGGTTGACATCTGTTTTCGGTATGGTTGGTACCACTGGCTTGTAAAATTCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14379#0 CGCGGTGACGAGACGACGCGAGTAGTGCGAGGTGGAGAAGACGAGCCGACACCACCACCA 60 consensus_14379#1 ------------------------------------------------------------ consensus_14379#0 CCACCACCACCACGAGAGGAGGAAGCCGCGGGTCTCCTCGTCTTCTCCTCTCTCTCTCTC 120 consensus_14379#1 ------------------------------------------------------------ consensus_14379#0 CTCAACCAGCTGTCTCGCGGTCGCCGGCGGCGGTGAGGGGAGGAAGCGGGGCTGCCTCGC 180 consensus_14379#1 ------------------------------------------------------------ consensus_14379#0 GCGGCGGGAGGTCTCCGGAGAGGGAGGGGTGTCGTGCTGATTTGGGGGGCTGCGGCGGTG 240 consensus_14379#1 ------------------------------------------------------------ consensus_14379#0 TCGGCGGCGATGGGGTGGGCTTCCTGCTGCAAGGGGGTGGACGGGGTTCTACCTGGCCGG 300 consensus_14379#1 ------------------------------------------------------------ consensus_14379#0 AGGAAGAAGAAGAAGGAGACGACATGGCGGATCTTCTCGCTGAAGGAGCTACAGTCAGCG 360 consensus_14379#1 ------------------------------------------------------------ consensus_14379#0 ACGAACAATTTCAACTATGACAACAAGCTTGGTGAGGGTGGGTTTGGCAGCGTCTACTGG 420 consensus_14379#1 ------------------------------------------------------------ consensus_14379#0 GGCCAGCTCTGGGATGGATCACAGATTGCGGTGAAAAGGCTCAAGAGTTGGAGCAACAAA 480 consensus_14379#1 ------------------------------------------------------------ consensus_14379#0 GCTGAAACTGAATTTGCAATTGAGGTGGAGGTTTTGGCGACAGTGAGACACAAGAGCCTG 540 consensus_14379#1 ------------------------------------------------------------ consensus_14379#0 TTGAGCTTACGTGGCTATTGTGCCGAAGGCCAAGAACGCCTGATAGTCTACGATTATATG 600 consensus_14379#1 ------------------------------------------------------------ consensus_14379#0 CCAAACCTGAGCTTGCACTCCCACCTTCATGGACAGCATGCAGCTGAATGCCATCTTGGT 660 consensus_14379#1 ------------------------------------------------------------ consensus_14379#0 TGGGAACGAAGAATGAAGATCGCTATTGATTCTGCAGAAGGGATTGCATATCTTCATCAC 720 consensus_14379#1 ------------------------------------------------------------ consensus_14379#0 CAAGCGACACCACATATCATTCATCGGGATATCAAGTCAAGCAATGTTCTGTTGGACAAG 780 consensus_14379#1 ------------------------------------------------------------ consensus_14379#0 AATTTCCAAGCACGGGTTGCCGATTTTGGTTTTGCAAAGCTCATTCCAGATGGTGCAACC 840 consensus_14379#1 ------------------------------------------------------------ consensus_14379#0 CATGTCACTACAAAGGTGAAGGGTACACTCGGTTATCTTGCACCGGAATACGCCATGCTT 900 consensus_14379#1 ------------------------------------------------------------ consensus_14379#0 GGGAAGGCCTCTGAAAGCTGTGATGTCTTCAGCTTTGGAGTACTGCTGCTAGAGCTTGCC 960 consensus_14379#1 ------------------------------------------------------------ consensus_14379#0 AGTGGAAAGAGGCCAGTTGAGAAGCTAAACCCCACTACGAAGCTAACTATCACGGAGTGG 1020 consensus_14379#1 ------------------------------------------------------------ consensus_14379#0 GCACTTCCACTTGCCCGTGACAAAAAGTTCAAGGAAATTGCTGATCCAAAGCTCAAGGAT 1080 consensus_14379#1 ------------------------------------------------------------ consensus_14379#0 GTCTTCGTCGAGGCTGAACTGAAGCGAATGGTGCTTGTTGGGCTTGCATGCAGTCAGAAC 1140 consensus_14379#1 ------------------------------------------------------------ consensus_14379#0 AAACAGGAACAGAGGCCGATAATGTCTGAAGTCGTTGAGCTGCTCAAGGGAGAATCTGCT 1200 consensus_14379#1 ------------------------------------------------------------ consensus_14379#0 GAGAAGCTTTCCAACTTGGAGAATGATGAGATGTTCAAGCCTGATCTGACCAGCTCCTTC 1260 consensus_14379#1 ------------------------------------------------------------ consensus_14379#0 CAGGACTCATCTCATTCGTCTCATCCTGATAGTTCAGACTGCATCACAGAAGAGAAGAAC 1320 consensus_14379#1 ------------------------------------------------------------ consensus_14379#0 TCAAAAGCAGATACAATAGACGAGGCAGTTGATTCAAGTGAGACAGTACCTTCAGCTAGG 1380 consensus_14379#1 ------------------------------------------------------------ consensus_14379#0 TAGTTTGATGCATAGAATTATAAGTTATCTGTCATTCATCAGCAGGAGTTATTGGTTTCC 1440 consensus_14379#1 ------------------------------------------------------------ consensus_14379#0 TTCCGTGGAGCATTGTGTGTTTACCTCTGCATGCGTGTTTATGCC-TTGTTT-ACCGGCA 1498 consensus_14379#1 -------------------------------TGCGTGTTTATGCCCTTGTTTGACCGGCA 29 ************** ****** ******* consensus_14379#0 -GGTTTGGGTGCTT--CCCTTGT-CATCT-CACAGATATACTTATCTG-TGTGT-ATGGT 1551 consensus_14379#1 CGGTTTGGGTGCTGTGCCCTGGTGCATCTGCACAGATATACTTATCTGGTGTGTGATGGT 89 ************ **** ** ***** ****************** ***** ***** consensus_14379#0 TAATTG-TTACAATCTGTTTTCGGTATGGTTG-TACCA-TGGCTTGTAAAATTCTGCATA 1608 consensus_14379#1 TAATTGGTTGACATCTGTTTTCGGTATGGTTGGTACCACTGGCTTGTAAAATTCTG---- 145 ****** ** ******************** ***** ***************** consensus_14379#0 TCTGGTGCTGATCCAAAGTTAACATGTTGTTCCCAAAAAAAA 1650 consensus_14379#1 ------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||