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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14391#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1594 fasta sequence
[GCAAAGCTCCTTCCTTCTCCTCTGTCTCCTCCTCTCTAGAGAGAGAAACAGAAAAAAGGAGGAGACTAGGGCTCTGCTCCTCCCCCTGCGCCGGTTGGTCGGAGCTCTGCCTCCTCCTGATTCTGCTGTCCCCTCCCCTCCCCGATCCACCTCCTCCTCCATCTCCTTCTCCTCCCGCCGATCCGATGCGTCATCACTAGCCTCCCCTCCCGCGCTTCCACCAACCACTGCCCCTCCACCCTCACCTCGTGGTTTGGTAATTTGGTTGGCCGCTTGTCCCCTTCCATCCACCGATCCACCTTCCCGTTGCTGCGGGGATGGCCGTCGTCGAGACCTCCGCCGACCACGCCGCGCCTCCGCCGCCCGAGGGGGACGCCGGGGAGAGGGAGATGCGGGATCTGGAGGACCTGCTCTCCAAGCTCAACCCCATGGCCGAGGAGTTCGTCCCGCCTTCCCTCGCCGCCGCCTCCCCCACCGCCTACGCCTACTACCCCACCCCCACCCCCTCCCACGTCTTCCCCGCCGTCGATGGCCTCGCCGGACCCCGACCCAGGAAGAAGGGCGGAGGAGGAGGTGGAGGAGGAGGGTTCGGTGGCCAGGGCCACGCCGGGAAGCGCCGGATGAACAGCCGCACCAGCATGGCGCAGCGCGACGAGGTCATCCGCCGCACCGTCTACGTCTCCGACATCGATCACCAGGTCACTGAAGAGCAATTGGCAGCACTATTTATCAACTGTGGACAGGTTGTGGACTGTCGTATGTGTGGGGATCCGAATTCTGTTCTTCGTTTTGCTTTCATAGAGTTCACTGATGAGGAGAGTGCAAGGGCTGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGTCCGATGATGAGCGTGAGATGTGTGCAAGGACTATTTACTGCACAAACATTGACAAGAAGGTCTCTCAGGCAGATGTGAAATTGTTCTTCG-AGTCGATATGTGGAGAGGTATATCGGCTGAGGTTGCTTGGTGACTACCATCATTCTACTCGCATTGCCTTTGTGGAGTTTGTGATGGCTGAAAGTGCCACTGCTGCTCTCAACTGCAGTGGTGTCATACTGGGTTCCTTGCCAATAAGGGTGAGCCCCTCAAAGACTCCCGTGCGTCCCCGTGCACCTCGCCAGCTGATGCACTAGGTGTTGTAGGTACAGGAGGTGCTGATGGCACTGCTTATATATAGAGATAGACATATATGAAAGAGAAGTTACGATATATGTCTTTTGTTTTATCTGCTCGGCCTTCTTTTTACTGTACCGTTAGTAAGTATCTACACTTGCAACGGAGGGGGGAAACCGTTACCGGGTTTGGTCTTTTTCTTTTTTACCTTGCACATAGCGCTTCTTAGAAGCGGGCCTGACGCTTTTGTCCTTGATGCAGCA-AGGCAAAACTCCTGGACTTTTGTCGCTGTTCA-GTTGTTTGCTGTGTCTTGTTTGCTA-CTGAGAACCTGATGAACTCGTTACCTGAAAATGGAGACTTATCGTTATGCTGTACAAAAAAAAAAAGA]
[+] EMBL AU094037 [GCAAAGCTCCTTCCTTCTCCTCTGTCTCCTCCTCTCTAGAGAGAGAAACAGAAAAAAGGAGGAGACTAGGGCTCTGCTCCTCCCCCTGCGCCGGTTGGTCGGAGCTCTGCCTCCTCCTGATTCTGCTGTCCCCTCCCCTCCCCGATCCACCTCCTCCTCCATCTCCTTCTCCTCCCGCNGATCCGATGCGTCATCACTAGCCTCCCCTCCCGCGCTTCCACCAACCACTGCCCCTCCACCCTCACCTCGTGGTTTGGTAATTTGGTTGGCCGCTTGTCCCCTTCCATCCACCGATCCACCTTCCCGTTGCTGCGGGGATGGCCG ]
[+] EMBL AK103042 [ AAAGCTCCTTCCTTCTCCTCTGTCTCCTCCTCTCTAGAGAGAGAAACAGAAAAAAGGAGGAGACTAGGGCTCTGCTCCTCCCCCTGCGCCGGTTGGTCGGAGCTCTGCCTCCTCCTGATTCTGCTGTCCCCTCCCCTCCCCGATCCACCTCCTCCTCCATCTCCTTCTCCTCCCGCCGATCCGATGCGTCATCACTAGCCTCCCCTCCCGCGCTTCCACCAACCACTGCCCCTCCACCCTCACCTCGTGGTTTGGTAATTTGGTTGGCCGCTTGTCCCCTTCCATCCACCGATCCACCTTCCCGTTGCTGCGGGGATGGCCGTCGTCGAGACCTCCGCCGACCACGCCGCGCCTCCGCCGCCCGAGGGGGACGCCGGGGAGAGGGAGATGCGGGATCTGGAGGACCTGCTCTCCAAGCTCAACCCCATGGCCGAGGAGTTCGTCCCGCCTTCCCTCGCCGCCGCCTCCCCCACCGCCTACGCCTACTACCCCACCCCCACCCCCTCCCACGTCTTCCCCGCCGTCGATGGCCTCGCCGGACCCCGACCCAGGAAGAAGGGCGGAGGAGGAGGTGGAGGAGGAGGGTTCGGTGGCCAGGGCCACGCCGGGAAGCGCCGGATGAACAGCCGCACCAGCATGGCGCAGCGCGACGAGGTCATCCGCCGCACCGTCTACGTCTCCGACATCGATCACCAGGTCACTGAAGAGCAATTGGCAGCACTATTTATCAACTGTGGACAGGTTGTGGACTGTCGTATGTGTGGGGATCCGAATTCTGTTCTTCGTTTTGCTTTCATAGAGTTCACTGATGAGGAGAGTGCAAGGGCTGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGTCCGATGATGAGCGTGAGATGTGTGCAAGGACTATTTACTGCACAAACATTGACAAGAAGGTCTCTCAGGCAGATGTGAAATTGTTCTTCG AGTCGATATGTGGAGAGGTATATCGGCTGAGGTTGCTTGGTGACTACCATCATTCTACTCGCATTGCCTTTGTGGAGTTTGTGATGGCTGAAAGTGCCACTGCTGCTCTCAACTGCAGTGGTGTCATACTGGGTTCCTTGCCAATAAGGGTGAGCCCCTCAAAGACTCCGGTGCGTCCCCGTGCACCTCGCCAGCTGATGCACTAGGTGTTGTAGGTACAGGAGGTGCTGATGGCACTGCTTATATATAGAGATAGACATATATGAAAGAGAAGTTACGATATATGTCTTTTGTTTTATCTGCTCGGCCTTCTTTTTACTGTACCGTTAGTAAGTATCTACACTTGCAACGGAGGGGGGAAACCGTTACCGGGTTTGGTCTTTTTCTTTTTTACCTTGCACATAGCGCTTCTTAGAAGCGGGCCTGACGCTTTTGTCCTTGATGCAGCA AGGCAAAACTCCTGGACTTTTGTCGCTGTTCA GTTGTTTGCTGTGTCTTGTTTGCTA CTGAGAACCTGATGAACTCGTTACCTGAAAATGGAGACTTATC ]
[+] EMBL C27229 [ AGCTCCTTCCTTCTCCTCTGTCTCCTCCTCTCTAGAGAGAGAAACAGAAAAAAGGAGGAGACTAGGGCTCTGCTCCTCCCCCTGCGCCGGTTGGTCGGAGCTCTGCCTCCTCCTGATTCTGCTGTCCCCTCCCCTCCCCGATCCACCTCCTCCTCCATCTGCTTCTCCTCCCGCCGATCCGATGCGTCATCACTAGCCTCCCCTCCCGCGCTTCCACCAACCACTGCCCCTCCACCCTCACCTCGTGGTTTGGTAATTTGGTTGGCCGCTTGTCCCCTTCCATCCACCGATCCACCTTCCCGTTGCTGCGGGGATGGCCGTCGTCGAG ]
[+] EMBL CB648792 [ GAGACTCGTTCTCTGCTCCTCCCCCTGCGCCGGTTGGTCGGAGCTCTGCCTCCTCCTGATTCTGCTGTCCCCTCCCCTCCCCGATCCACCTCCTCCTCCATCTCCTTCTCCTCCCGCCGATCCGATGCGTCATCACTAGCCTCCCCTCCCGCGCTTCCACCAACCACTGCCCCTCCACCCTCACCTCGTGGTTTGGTAATTTGGTTGGCCGCTTGTCCCCTTCCATCCACCGATCCACCTTCCCGTTGCTGCGGGGATGGCCGTCGTCGAGACCTCCGCCGACCACGCCGCGCCTCCGCCGCCCGAGGGGGACGCCGGGGAGAGGGAGATGCGGGATCTGGAGGACCTGCTCTCCAAGCTCAACCCCATGGCCGAGGAGTTCGTCCCGCCTTCCCTCGCCGCCGCCTCCCCCACCGCCTACGCCTACTACCCCACCCCCACCCCCTCCCACGTCTTCCCCGCCGTCGATGGCCTCGCCGGACCCCGACCCAGGAAGAAGGGCGGAGGAGGAGGTGGAGGAGGAGGGTTCGGTGGCCAGGGCCACGCCGGGAAGCGCCGGATGAACAGCCGCACCAGCATGGCGCAGCGCGACGAGGTCATCCGCCGCACCGTCTACTTCTCCGACATCGATCACCAAGTCACTGAAGAGCAATTGGCAGCACTATTTATCAACTGTGGACAGGTTGTGGACTGTCGTATGTGTGGGGATCCc ]
[+] EMBL CB677336 [ GCCTCCTCCTGATTCTGCTGTCCCCTCCCCTCCCCGATCCACCTCCTCCTCCATCTCCTTCTCCTCCCGCCGATCCGATGCGTCATCACTAGCCTCCCCTCCCGCGCTTCCACCAACCACTGCCCCTCCACCCTCACCTCGTGGTTTGGTAATTTGGTTGGCCGCTTGTCCCCTTCCATCCACCGATCCACCTTCCCGTTGCTGCGGGGATGGCCGTCGTCGAGACCTCCGCCGACCACGCCGCGCCTCCGCCGCCCGAGGGGGACGCCGGGGAGAGGGAGATGCGGGATCTGGAGGACCTGCTCTCCAAGCTCAACCCCATGGCCGAGGAGTTCGTCCCGCCTTCCCTCGCCGCCGCCTCCCCCACCGCCTACGCCTACTACCCCACCCCCACCCCCTCCCACGTCTTCCCCGCCGTCGATGGCCTCGACGGACCCCGACCCATGAAGAAGGGCGGAGGAGGAGGTGGAGGAGGAGGGTTCGGTGGGCAAGGCCACGCCGGGAAGCGCCGGATGAACAGCCGCACCTGCATGGCGCAGCACGACGAG ]
[+] EMBL CA758606 [ TCCACCTCCTCCTCCATCTCCTTCTCCTCCCGCCGATCCGATGCGTCATCACTAGCCTCCCCTCCCGCGCTTCCACCAACCACTGCCCCTCCACCCTCACCTCGTGGTTTGGTAATTTGGTTGGCCGCTTGTCCCCTTCCATCCACCGATCCACCTTCCCGTTGCTGCGGGGATGGCCGTCGATGAGACCTTCGTCGACCACGCCGTGCCTACGTCGACCGTGGGGGACGCCGGGG ]
[-] EMBL CB648793 [ GATCCGAATTCTGTTCTTCGTTTTGCTTTCATAGAGTTCACTGATGAGGAGAGTGCAAGGGCTGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGTCCGATGATGAGCGTGAGATGTGTGCAAGGACTATTTACTGCACAAACATTGACAAGAAGGTCTCTCAGGCAGATGTGAAATTGTTCTTCG AGTCGATATGTGGAGAGGTATATCGGCTGAGGTTGCTTGGTGACTACCATCATTCTACTCGCATTGCCTTTGTGGAGTTTGTGATGGCTGAAAGTGCCACTGCTGCTCTCAACTGCAGTGGTGTCATACTGGGTTCCTTGCCAATAAGGGTGAGCCCCTCAAAGACTCCCGTGCGTCCCCGTGCACCTCGCCAGCTGATGCACTAGGTGTTGTAGGTACAGGAGGTGCTGATGGCACTGCTTATATATAGAGATAGACATATATGAAAGAGAAGTTACGATATATGTCTTTTGTTTTATCTGCTCGGCCTTCTTTTTACTGTCCCGTTAGTAAGTATCTACACTTGCAACGGAGGGGGGAAACCGTTACCGGGTTTGGTCTTTTTCTTTTTTACCTTGCACATAGCGCTTCTTAGAAGCGGGCCTGACGCTTTTGTCCTTGATGCAGCA AGGCAAAACTCCTGGACTTTTGTCGCTGTTCA GTTGTTTGCTGTGTCTTGTTTGCTA CTGAGAACCTGATGAACTCGTTCCCTGAAAATGGAGACTTATCGTTATGCTGTCCAAAAAAAAAAAG ]
[-] EMBL CB651841 [ TTCTGTTCTTCGTTTTGCTTTCATAGAGTTCACTGATGAGGAGAGTGCAAGGGCTGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGTCCGATGATGAGCGTGAGATGTGTGCAAGGACTATTTACTGCACAAACATTGACAAGAAGGTCTCTCAGGCAGATGTGAAATTGTTCTTCG AGTCGATATGTGGAGAGGTATATCGGCTGAGGTTGCTTGGTGACTACCATCATTCTACTCGCATTGCCTTTGTGGAGTTTGTGATGGCTGAAAGTGCCACTGCTGCTCTCAACTGCAGTGGTGTCATACTGGGTTCCTTGCCAATAAGGGTGAGCCCCTCAAAGACTCCCGTGCGTCCCCGTGCACCTCGCCAGCTGATGCACTAGGTGTTGTAGGTACAGGAGGTGCTGATGGCACTGCTTATATATAGAGATAGACATATATGAAAGAGAAGTTACGATATATGTCTTTTGTTTTATCTGCTCGGCCTTCTTTTTACTGTACCGTTAGTAAGTATCTACACTTGCAACGGAGGGGGGAAACCGTTACCGGGTTTGGTCTTTTTCTTTTTTACCTTGCACATAGCGCTTCTTAGAAGCGGGCCTGACGCTTTTGTCCTTGATGCAGCA AGGCAAAACTCCTGGACTTTTGTCGCTGTTCA GTTGTTTGCTGTGTCTTGTTTGCTA CTGAGAACCTGATGAACTCGTTACCTGAAAATGGAGACTTATCGTT ]
[+] EMBL AU094038 [ nGTGAAATTGTTCTTCGAAGTCGATATGTGGAGAGGTATATCGGCTGAGGTTGCTTGGTGA TACCATCATTCTACTCGNATTGCCTTTGTGGAGTTTGTGATGGCTGAAAGTNCAACTGCTGCTCTCAACTGCAGTGGTGTCATACTGGGTTCCTTGCCAATAAGGGTGAGCCCCTCAAAGACTCCCGTGCGTCCCCGTGCACCTCGCCAGNTGATGCACTAGGTGTTGTAGGTACAGGAGGTGCTGATGGCACTGCTTATATATAGAGATAGACATATATGAAAGAGAAGTTACGATATATGTCTTTTGTTTTATCTGCTCGGCCTTCTTTTTACTGTACCGTTAGTAAGTATCTACACTTGCAACGGAGGGGGGAAACCGTTACCGGGTTTGGTCTTTTTCTTTTTTACCTTGCACATAGCGCTTCTTAGAAGCGGGCCTGACGCTTTTGTCCTTGATGCAGCA AGGNAAAANTCCTGGACTTTTGTCGCTGTTCA GTTGTTTGCTGTGTCTTGTTTGCTA CTGAGAACCTGATGAACTCGTTACCTGAAAATGGAGACTTATCGTTATGCTGTACAAAAAAAAAAAaa]
[+] EMBL BM420218 [ ATTCTACTCGCATTGCCTTTGTGGAGTTTGTGATGGCTGAAAGTGCCACTGCTGCTCTCAACTGCAGTGGTGTCATACTGGGTTCCTTGCCAATAAGGGTGAGCCCCTCAAAGACTCCCGTGCGTCCCCGTGCACCTCGCCAGCTGATGCACTAGGTGTTGTAGGTACAGGAGGTGCTGATGGCACTGCTTATATATAGAGATAGACATATATGAAAGAGAAGTTACGATATATGTCTTTTGTTTTATCTGCTCGGCCTTCTTTTTACTGTACCGTTAGTAAGTATCTACACTTGCAACGGAGGGGGGAAACCGTTACCGGGTTTGGTCTTTTTCTTTTTTACCTTGCACATAGCGCTTCTTAGAAGCGGGCCTGACGCTTTTGTCCTTGATGCAGCA AGGC AAACTCCTGGACTTTTGTCGCTGTTCA GTTGTTTGCTGTGTCTTGTTTGCTA CTGAGAACCTGATGAACTCGTTACCTGAAAATGGAGACTTATCGTTATGCTGTAAAAAAA ]
[+] EMBL AU166840 [ TTGCCAATAAGGGTGAGCCCCTCAAAGACTCCCGTGCGTCCCCGTGCACCTCGCCAGCTGATGCACTAGGTGTTGTAGGTACAGGAGGTGCTGATGGCACTGCTTATATATAGAGATAGACATATATGAAAGAGAAGTTCCGATATATGTCTTTTGTTTTATCTGCTCGGCCTTCTTTTTACTGTACCGTTAGTAAGTATCTACACTTGCAACGGAGGGGGGAAACCGTTACCGGGTTTGGTCTTTTTCTTTTTTACCTTGCACATAGCGCTTNTTANAANCGGGCCTGACGCTTTTGTCCTTGATGCAGCA AGGCAAAACTCCTGGACTTTTGTCGCTGTTCA GTTGTTTGCTGTGTCTTGTTTGCTA CTGAGAACCTGATGAACTCGTTACCTGAAAATGGAGACTTATCGTTATGCTGTAAAAAAAAAAAA ]
[+] EMBL CA764551 [ ACCGNTACCGGGTTTGGTCTTTCTCTTTTTTACCTTGCACATAGCGCTTNTTAGNAGCGGGCCTGACGCTTTTGTCCTTGATGCAGNA AGGCAAAACTCCTGGACTTTTGTCGCTGTTCA GTTGTTTGCTGTGTCTTGNTTGCTA CTGACAACCTGATGAACTCNTTACCTGAAAATGGAGACTTATCGNTATGCTGTACAttng ]
[+] EMBL BM421550 [ CTTGCACATAGCGCTTCTTAGAAGCGGGCCTGACGCTTTTGTCCTTGATGCAGCACAGGCCAAACTCCTGGACTTTTGTCCCTGTTCACGTTGTTT CTGTGTCTTGTTTGCTACCTGAGAACCTGATGAACTCGTTACCTGAAAATGGAGACTTATCGTTATGCTGTACCAAAAAAAAAA ]
consensusID : consensus_14391#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1186 fasta sequence
[TCTAGAGAGAGAAACAGAAAAAAGGAGGAGACTAGGGCTCTGCTCCTCCCCCTGCGCCGGTTGGTCGGAGCTCTGCCTCCTCCTGATTCTGCTGTCCCCTCCCCTCCCCGATCCACCTCCTCCTCCCACGTCTTCCCCGCCGTCGATGGCCTCGCCGGACCCCGACCCAGGAAGAAGGGCGGAGGAGGAGGTGGAGGAGGAGGGTTCGGTGGCCAGGGCCACGCCGGGAAGCGCCGGATGAACAGCCGCACCAGCATGGCGCAGCGCGACGAGGTCATCCGCCGCACCGTCTACGTCTCCGACATCGATCACCAGGTCACTGAAGAGCAATTGGCAGCACTATTTATCAACTGTGGACAGGTTGTGGACTGTCGTATGTGTGGGGATCCGAATTCTGTTCTTCGTTTTGCTTTCATAGAGTTCACTGATGAGGAGAGTGCAAGGGCTGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGTCCGATGATGAGCGTGAGATGTGTGCAAGGACTATTTACTGCACAAACATTGACAAGAAGGTCTCTCAGGCAGATGTGAAATTGTTCTTCGAGTCGATATGTGGAGAGGTATATCGGCTGAGGTTGCTTGGTGACTACCATCATTCTACTCGCATTGCCTTTGTGGAGTTTGTGATGGCTGAAAGTGCCACTGCTGCTCTCAACTGCAGTGGTGTCATACTGGGTTCCTTGCCAATAAGGGTGAGCCCCTCAAAGACTCCCGTGCGTCCCCGTGCACCTCGCCAGCTGATGCACTAGGTGTTGTAGGTACAGGAGGTGCTGATGGCACTGCTTATATATAGAGATAGACATATATGAAAGAGAAGTTACGATATATGTCTTTTGTTTTATCTGCTCGGCCTTCTTTTTACTGTACCGTTAGTAAGTATCTACACTTGCAACGGAGGGGGGAAACCGTTACCGGGTTTGGTCTTTTTCTTTTTTACCTTGCACATAGCGCTTCTTAGAAGCGGGCCTGACGCTTTTGTCCTTGATGCAGCAAGGCAAAACTCCTGGACTTTTGTCGCTGTTCAGTTGTTTGCTGTGTCTTGTTTGCTACTGAGAACCTGATGAACTCGTTACCTGAAAATGGAGACTTATC]
[+] EMBL AK061804 [TCTAGAGAGAGAAACAGAAAAAAGGAGGAGACTAGGGCTCTGCTCCTCCCCCTGCGCCGGTTGGTCGGAGCTCTGCCTCCTCCTGATTCTGCTGTCCCCTCCCCTCCCCGATCCACCTCCTCCTCCCACGTCTTCCCCGCCGTCGATGGCCTCGCCGGACCCCGACCCAGGAAGAAGGGCGGAGGAGGAGGTGGAGGAGGAGGGTTCGGTGGCCAGGGCCACGCCGGGAAGCGCCGGATGAACAGCCGCACCAGCATGGCGCAGCGCGACGAGGTCATCCGCCGCACCGTCTACGTCTCCGACATCGATCACCAGGTCACTGAAGAGCAATTGGCAGCACTATTTATCAACTGTGGACAGGTTGTGGACTGTCGTATGTGTGGGGATCCGAATTCTGTTCTTCGTTTTGCTTTCATAGAGTTCACTGATGAGGAGAGTGCAAGGGCTGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGTCCGATGATGAGCGTGAGATGTGTGCAAGGACTATTTACTGCACAAACATTGACAAGAAGGTCTCTCAGGCAGATGTGAAATTGTTCTTCGAGTCGATATGTGGAGAGGTATATCGGCTGAGGTTGCTTGGTGACTACCATCATTCTACTCGCATTGCCTTTGTGGAGTTTGTGATGGCTGAAAGTGCCACTGCTGCTCTCAACTGCAGTGGTGTCATACTGGGTTCCTTGCCAATAAGGGTGAGCCCCTCAAAGACTCCCGTGCGTCCCCGTGCACCTCGCCAGCTGATGCACTAGGTGTTGTAGGTACAGGAGGTGCTGATGGCACTGCTTATATATAGAGATAGACATATATGAAAGAGAAGTTACGATATATGTCTTTTGTTTTATCTGCTCGGCCTTCTTTTTACTGTACCGTTAGTAAGTATCTACACTTGCAACGGAGGGGGGAAACCGTTACCGGGTTTGGTCTTTTTCTTTTTTACCTTGCACATAGCGCTTCTTAGAAGCGGGCCTGACGCTTTTGTCCTTGATGCAGCAAGGCAAAACTCCTGGACTTTTGTCGCTGTTCAGTTGTTTGCTGTGTCTTGTTTGCTACTGAGAACCTGATGAACTCGTTACCTGAAAATGGAGACTTATC]
[+] EMBL CB651840 [ CGTCGACTTCCTCGCCGGACCCCGACCCAGGAAGAAGGGCGGAGGAGGAGGTGGAGGAGGAGGGTTCGGTGGCCAAGGCCACGCCGGGAAGCGCCGGATGAACAGCCGCACCAGCATGGCGCAGCGCGACGAGGTCATCCGCCGCACCGTCTACGTCTCCGACATCGATCACCAGGTCACTGAAGAGCAATTGGCAGCACTATTTATCAACTGTGGACAGGTTGTGGACTGTCGTATGTGTGGGGATCCGAATTCTGTTCTTCGTTTTGCTTTCATAGAGTTCACTGATGAGGAGAGTGCAAGGGCTGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGTCCGATGATGAGCGTGAGATGTGTGCAAGGACTATTTACTGCACAAACATTGACAAGAAGGTCTCTCAGGCAGATGTGAAATTGTTCTTCGAGTCGATATGTGGAGAGGTATATCGGCTGAGGTTGCTTGGTGACTACCATCATTCTACTCGCATTGCCTTTGTGGAGTTTGTGATGGCTGAAAGTGCCACTGCTGCTCTCAACTGCAGTGGTGTCATACTGGGTTCCTTGCCAATAAGGGTGAGCCCCTCAAAGACTCCCGTGCGTCCCCGTGCACCTCGCCAGCTGATGCACTATGTGTTGTATGTACAAGAGGTGCTGATGGCACTGCTTATATATAGAGATAGACATATATGAAAGAGAAGTTACGATATATGTCTTTTGTTTT ]
consensusID : consensus_14391#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 377 fasta sequence
[GCTNCTTNCTTNTNCTCTGTCTCCTCCTCTCTAGAGAGAGTAAACAGAAAAAAGGAGGAGACTANGGNTCTGCTNCTCCCCCTGCGCCGGNTGGTCGGGATCTCTGCNTCCTACTGATTATGGTGAGAGGCTAGGCCTNNNGGATCCAACTCCTCCTCCATCTCCTTCTCCTCCCGCCGATCCGATGCGTCATCACTAGCCTCCCCTCCCGCGCTTCCACCAACCACTGCCCCTCCACCCTCACCTCGTGGTTTGGTAATTTGGTTGGCCGCTTGTCCCCTTCCATCCACCGATCCACCTTCCCGTTGCTGCGGGGATGGCCGTCGTCGAGACCTCCGCCGACCACGCCGNGCCTCCGCCGNCCGAGGGGGACGCCG]
[+] EMBL AU181853 [GCTNCTTNCTTNTNCTCTGTCTCCTCCTCTCTAGAGAGAGTAAACAGAAAAAAGGAGGAGACTANGGNTCTGCTNCTCCCCCTGCGCCGGNTGGTCGGGATCTCTGCNTCCTACTGATTATGGTGAGAGGCTAGGCCTNNNGGATCCAACTCCTCCTCCATCTCCTTCTCCTCCCGCCGATCCGATGCGTCATCACTAGCCTCCCCTCCCGCGCTTCCACCAACCACTGCCCCTCCACCCTCACCTCGTGGTTTGGTAATTTGGTTGGCCGCTTGTCCCCTTCCATCCACCGATCCACCTTCCCGTTGCTGCGGGGATGGCCGTCGTCGAGACCTCCGCCGACCACGCCGNGCCTCCGCCGNCCGAGGGGGACGCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14391#0 GCAAAGCTCCTTCCTTCTCCTCTGTCTCCTCCTCTCTAGAGAGAG-AAACAGAAAAAAGG 59
consensus_14391#2 -----GCTNCTTNCTTNTNCTCTGTCTCCTCCTCTCTAGAGAGAGTAAACAGAAAAAAGG 55
consensus_14391#1 ----------------------------------TCTAGAGAGAG-AAACAGAAAAAAGG 25
*********** **************
consensus_14391#0 AGGAGACTAGGGCTCTGCTCCTCCCCCTGCGCCGGTTGGTCGGAG-CTCTGCCTCCTCCT 118
consensus_14391#2 AGGAGACTANGGNTCTGCTNCTCCCCCTGCGCCGGNTGGTCGGGATCTCTGCNTCCTACT 115
consensus_14391#1 AGGAGACTAGGGCTCTGCTCCTCCCCCTGCGCCGGTTGGTCGGAG-CTCTGCCTCCTCCT 84
********* ** ****** *************** ******* ****** **** **
consensus_14391#0 GATTCTGCTGTCC--CCTCCCCTCCCCGATCCACCTCCTCCTCCATCTCCTTCTCCTCC- 175
consensus_14391#2 GATTATGGTGAGAGGCTAGGCCTNNNGGATCCAACTCCTCCTCCATCTCCTTCTCCTCC- 174
consensus_14391#1 GATTCTGCTGTCC--CCTCCCCTCCCCGATCCACCTCCTCCTCCCACGTCTTCCCCGCCG 142
**** ** ** * *** ****** ********** * **** ** **
consensus_14391#0 ----------CGCCGA--TCCGATGCGTCATCACTAGC---------------------- 201
consensus_14391#2 ----------CGCCGA--TCCGATGCGTCATCACTAGC---------------------- 200
consensus_14391#1 TCGATGGCCTCGCCGGACCCCGACCCAGGAAGAAGGGCGGAGGAGGAGGTGGAGGAGGAG 202
***** **** * * * **
consensus_14391#0 --CTCCCCTCCCGCGCTTCCACC---AACCACTGCCCCTCCACCCTCACCT-CGTGGTTT 255
consensus_14391#2 --CTCCCCTCCCGCGCTTCCACC---AACCACTGCCCCTCCACCCTCACCT-CGTGGTTT 254
consensus_14391#1 GGTTCGGTGGCCAGGGCCACGCCGGGAAGCGCCGGATGAACAGCCGCACCAGCATGGCGC 262
** ** * * ** ** * * * ** ** **** * ***
consensus_14391#0 GGTA--ATTTGGTTGGCCGCTTGTCCCCTTCCATCCACCG-ATCCACCTTCCCGTTGCTG 312
consensus_14391#2 GGTA--ATTTGGTTGGCCGCTTGTCCCCTTCCATCCACCG-ATCCACCTTCCCGTTGCTG 311
consensus_14391#1 AGCGCGACGAGGTCATCCGCCGCACCGTCTACGTCTCCGACATCGATCACCAGGTCACTG 322
* * *** **** ** * * ** * *** * * * ** ***
consensus_14391#0 CGGGGA---TGGCCGTCGTCGAGACCTCCGCCGACCACGCCGCGCCTCCGCCGCCCGAGG 369
consensus_14391#2 CGGGGA---TGGCCGTCGTCGAGACCTCCGCCGACCACGCCGNGCCTCCGCCGNCCGAGG 368
consensus_14391#1 AAGAGCAATTGGCAGCACTATTTATCAACTGTGGACAGGTTGTGGA-CTGTCGTATGTGT 381
* * **** * * * * * * ** * * * * * ** * *
consensus_14391#0 GGGACGCCGGGGAGAGGGAGATGCGGGATCTGGAGGACCTGCTCTCCAAGCTCAACCCCA 429
consensus_14391#2 GGGACGCCG--------------------------------------------------- 377
consensus_14391#1 GGGGATCCGAATTCTGTTCTTCGTTTTGCTTTCATAGAGTTCACTGATGAGGAGAGTGCA 441
*** ***
consensus_14391#0 TGGCCGAGGAGTTCGTCCCGCCTTCCCTCGCCGCCGCCTCCCCCACCGCCTACGCCTACT 489
consensus_14391#2 ------------------------------------------------------------
consensus_14391#1 AGGGCTGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCA 501
consensus_14391#0 ACCCCACCCCCACCCCCTCCCACGTCTTCCCCGCCGTCGATGGCCTCGCCGGACCCCGAC 549
consensus_14391#2 ------------------------------------------------------------
consensus_14391#1 TCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGTCCGATGATGAGCGT 561
consensus_14391#0 CCAGGAAGAAGGGCGGAGGAGGAGGTGGAGGAGGAGGGTTCGGTGGCCAGGGCCACGCCG 609
consensus_14391#2 ------------------------------------------------------------
consensus_14391#1 GAGATGTGTGCAAGGACTATTTACTGCACAAACATTGACAAGAAGGTCTCTCAGGCAGAT 621
consensus_14391#0 GGAAGCGCCGGATGAACAGCCGCACCAGCATGGCGCAGCGCGACGAGGTCATCCGCCGCA 669
consensus_14391#2 ------------------------------------------------------------
consensus_14391#1 GTGAAATTGTTCTTCGAGTCGATATGTGGAGAGGTATATCGGCTGAGGTTGCTTGGTGAC 681
consensus_14391#0 CCGTCTACGTCTCCGACATCGATCACCAGGTCACTGAAGAGCAATTGGCAGCACTATTTA 729
consensus_14391#2 ------------------------------------------------------------
consensus_14391#1 TACCATCATTCTACTCGCATTGCCTTTGTGGAGTTTGTGATGGCTGAAAGTGCCACTGCT 741
consensus_14391#0 TCAACTGTGGACAGGTTGTGGACTGTCGTATGTGTGGGGATCCGAATTCTGTTCTTCGTT 789
consensus_14391#2 ------------------------------------------------------------
consensus_14391#1 GCTCTCAACTGCAGTGGTGTCATACTGGGTTCCTTGCCAATAAGGGTGAGCCCCTCAAAG 801
consensus_14391#0 TTGCTTTCATAGAGTTCACTGATGAGGAGAGTGCAAGGGCTGCTCTAAATTTGTCGGGAA 849
consensus_14391#2 ------------------------------------------------------------
consensus_14391#1 ACTCCCGTGCGTCCCCGTGCACCTCGCCAGCTGATGCACTAGGTGTTGTAGGTACAGGAG 861
consensus_14391#0 CCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTA 909
consensus_14391#2 ------------------------------------------------------------
consensus_14391#1 GTGCTGATGGCACTGCTTATATATAGAGATAGACATATATGAAAGAGAAGTTACGATATA 921
consensus_14391#0 ACCCAACATTTCTGCCCAGGTCCGATGATGAGCGTGAGATGTGTGCAAGGACTATTTACT 969
consensus_14391#2 ------------------------------------------------------------
consensus_14391#1 TGTCTTTTGTTTTATCTGCTCGGCCTTCTTTTTACTGTACCGTTAGTAAGTATCTACACT 981
consensus_14391#0 GCACAAACATTGACAAGAAGGTCTCTCAGGCAGATGTGAAATTGTTCTTCGAGTCGATAT 1029
consensus_14391#2 ------------------------------------------------------------
consensus_14391#1 TGCAACGGAGGGGGGAAACCGTTACCGGGTTTGGTCTTTTTCTTTTTTACCTTGCACATA 1041
consensus_14391#0 GTGGAGAGGTATATCGGCTGAGGTTGCTTGGTGACTACCATCATTCTACTCGCATTGCCT 1089
consensus_14391#2 ------------------------------------------------------------
consensus_14391#1 GCGCTTCTTAGAAGCGGGCCTGACGCTTTTGTCCTTGATGCAGCAAGGCAAAACTCCTGG 1101
consensus_14391#0 TTGTGGAGTTTGTGATGGCTGAAAGTGCCACTGCTGCTCTCAACTGCAGTGGTGTCATAC 1149
consensus_14391#2 ------------------------------------------------------------
consensus_14391#1 ACTTTTGTCGCTGTTCAGTTGTTTGCTGTGTCTTGTTTGCTACTGAGAACCTGATGAACT 1161
consensus_14391#0 TGGGTTCCTTGCCAATAAGGGTGAGCCCCTCAAAGACTCCCGTGCGTCCCCGTGCACCTC 1209
consensus_14391#2 ------------------------------------------------------------
consensus_14391#1 CGTTACCTGAAAATGGAGACTTATC----------------------------------- 1186
consensus_14391#0 GCCAGCTGATGCACTAGGTGTTGTAGGTACAGGAGGTGCTGATGGCACTGCTTATATATA 1269
consensus_14391#2 ------------------------------------------------------------
consensus_14391#1 ------------------------------------------------------------
consensus_14391#0 GAGATAGACATATATGAAAGAGAAGTTACGATATATGTCTTTTGTTTTATCTGCTCGGCC 1329
consensus_14391#2 ------------------------------------------------------------
consensus_14391#1 ------------------------------------------------------------
consensus_14391#0 TTCTTTTTACTGTACCGTTAGTAAGTATCTACACTTGCAACGGAGGGGGGAAACCGTTAC 1389
consensus_14391#2 ------------------------------------------------------------
consensus_14391#1 ------------------------------------------------------------
consensus_14391#0 CGGGTTTGGTCTTTTTCTTTTTTACCTTGCACATAGCGCTTCTTAGAAGCGGGCCTGACG 1449
consensus_14391#2 ------------------------------------------------------------
consensus_14391#1 ------------------------------------------------------------
consensus_14391#0 CTTTTGTCCTTGATGCAGCAAGGCAAAACTCCTGGACTTTTGTCGCTGTTCAGTTGTTTG 1509
consensus_14391#2 ------------------------------------------------------------
consensus_14391#1 ------------------------------------------------------------
consensus_14391#0 CTGTGTCTTGTTTGCTACTGAGAACCTGATGAACTCGTTACCTGAAAATGGAGACTTATC 1569
consensus_14391#2 ------------------------------------------------------------
consensus_14391#1 ------------------------------------------------------------
consensus_14391#0 GTTATGCTGTACAAAAAAAAAAAGA 1594
consensus_14391#2 -------------------------
consensus_14391#1 -------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||