cluster # 1442

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Oryza sativa
cluster # 1442 cluster # 1442 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1442#0 length = 540 sequences # 1

consensus_1442#1 length = 532 sequences # 1

consensusID : consensus_1442#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 540
fasta sequence

                              [GAGGATTCGGNACGANGGTGTTACTGNCNTGGGTCCAAATTTCNTTGTTACNCCCCCTGAACNAANCTTGAATGTCCCCTTCNTGNGTTTCNGAAAAATTNTCCCNGGGNGTGGANNCNTCCCCTTGANTTCCNANNCCTTCCAAAAAGNTATCCCTGGGCNNGCCCCCAANGANNTTANNCNCCACNTTGTNCNTNCCAAGCNCCGGTNGGTGANNNCTGCNCCNGTCCCNCTTGCTGCNCNGTTCATNGNTTTCCCCCCNTGTTTCCAACTTATGGGCCAAANGTTTGGGGGGGTTCCCTCCAATCCCAAGAACCCCAATCNAATTAATGTTTCCCCTGAATTTGGAANAATTGATCTTGTTCCAATAAAACGCTTCTGAAANCTGTATATATCAATTAATAATTTGTTCATGTCCTCCCNATTGAANATTGGTCCCTGNCAACATTTTTGCTGGGGCCATCCTGGAACGCCTGTTTTGAAACAAAATCTATCTTCNGAAGCNTNTNTNATGATTCACGTTTTGCATTCAGGCGTCTG]

[+] EMBL AA752803             [GAGGATTCGGNACGANGGTGTTACTGNCNTGGGTCCAAATTTCNTTGTTACNCCCCCTGAACNAANCTTGAATGTCCCCTTCNTGNGTTTCNGAAAAATTNTCCCNGGGNGTGGANNCNTCCCCTTGANTTCCNANNCCTTCCAAAAAGNTATCCCTGGGCNNGCCCCCAANGANNTTANNCNCCACNTTGTNCNTNCCAAGCNCCGGTNGGTGANNNCTGCNCCNGTCCCNCTTGCTGCNCNGTTCATNGNTTTCCCCCCNTGTTTCCAACTTATGGGCCAAANGTTTGGGGGGGTTCCCTCCAATCCCAAGAACCCCAATCNAATTAATGTTTCCCCTGAATTTGGAANAATTGATCTTGTTCCAATAAAACGCTTCTGAAANCTGTATATATCAATTAATAATTTGTTCATGTCCTCCCNATTGAANATTGGTCCCTGNCAACATTTTTGCTGGGGCCATCCTGGAACGCCTGTTTTGAAACAAAATCTATCTTCNGAAGCNTNTNTNATGATTCACGTTTTGCATTCAGGCGTCTG]




>consensus_1442#0
GAGGATTCGGNACGANGGTGTTACTGNCNTGGGTCCAAATTTCNTTGTTACNCCCCCTGA
ACNAANCTTGAATGTCCCCTTCNTGNGTTTCNGAAAAATTNTCCCNGGGNGTGGANNCNT
CCCCTTGANTTCCNANNCCTTCCAAAAAGNTATCCCTGGGCNNGCCCCCAANGANNTTAN
NCNCCACNTTGTNCNTNCCAAGCNCCGGTNGGTGANNNCTGCNCCNGTCCCNCTTGCTGC
NCNGTTCATNGNTTTCCCCCCNTGTTTCCAACTTATGGGCCAAANGTTTGGGGGGGTTCC
CTCCAATCCCAAGAACCCCAATCNAATTAATGTTTCCCCTGAATTTGGAANAATTGATCT
TGTTCCAATAAAACGCTTCTGAAANCTGTATATATCAATTAATAATTTGTTCATGTCCTC
CCNATTGAANATTGGTCCCTGNCAACATTTTTGCTGGGGCCATCCTGGAACGCCTGTTTT
GAAACAAAATCTATCTTCNGAAGCNTNTNTNATGATTCACGTTTTGCATTCAGGCGTCTG

consensusID : consensus_1442#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 532
fasta sequence

                              [CGAGGNTGTTACTGTCNTGGTTCNAAATTTCNTTGTTACNCCCCCTGAACTAANCTTGAATGTCCCNTTCNTGNGTTTCNGAAAAATTNTCNCAGGGNGTGGANACTTCCCNTTGANTTCCNANNCNTTCCANAAAGNTNTCNCTGGNCNNGCCNCCAANGANNTTATGCNCNACNTTGTNCNTNCNAAGCNCNGGTNGGTGANNCCNGCNCCNNTCNCNCTTGCTGCNCNGTTCNTNGNTTTCCCCCCNTGTTTCCANCTTATGGTCCAAAGGNTTGGGGGNGTTCCNTCCAATNCAAGGANGCCNATNAAATTAGTGTTNCCNTGANGTNGAAAATGATCTGTCCAATACNACGCTTCTGAANCTGTNTATATCAATTATAATTTGTCCTGTNCNCNAANTGANATTGGNCCCCGCCNACATTTTGCTGGGGCNTCCCGGAACCCCGTTTNAACAAAATCTNTCTTCCGAAGGCTNTTTNATTAATCCNCGTTTTGCATTCCNGGGGTTTGNCTGGGGTTAAAAAAAAAA]

[+] EMBL AA752739             [CGAGGNTGTTACTGTCNTGGTTCNAAATTTCNTTGTTACNCCCCCTGAACTAANCTTGAATGTCCCNTTCNTGNGTTTCNGAAAAATTNTCNCAGGGNGTGGANACTTCCCNTTGANTTCCNANNCNTTCCANAAAGNTNTCNCTGGNCNNGCCNCCAANGANNTTATGCNCNACNTTGTNCNTNCNAAGCNCNGGTNGGTGANNCCNGCNCCNNTCNCNCTTGCTGCNCNGTTCNTNGNTTTCCCCCCNTGTTTCCANCTTATGGTCCAAAGGNTTGGGGGNGTTCCNTCCAATNCAAGGANGCCNATNAAATTAGTGTTNCCNTGANGTNGAAAATGATCTGTCCAATACNACGCTTCTGAANCTGTNTATATCAATTATAATTTGTCCTGTNCNCNAANTGANATTGGNCCCCGCCNACATTTTGCTGGGGCNTCCCGGAACCCCGTTTNAACAAAATCTNTCTTCCGAAGGCTNTTTNATTAATCCNCGTTTTGCATTCCNGGGGTTTGNCTGGGGTTAAAAAAAAAA]




>consensus_1442#1
CGAGGNTGTTACTGTCNTGGTTCNAAATTTCNTTGTTACNCCCCCTGAACTAANCTTGAA
TGTCCCNTTCNTGNGTTTCNGAAAAATTNTCNCAGGGNGTGGANACTTCCCNTTGANTTC
CNANNCNTTCCANAAAGNTNTCNCTGGNCNNGCCNCCAANGANNTTATGCNCNACNTTGT
NCNTNCNAAGCNCNGGTNGGTGANNCCNGCNCCNNTCNCNCTTGCTGCNCNGTTCNTNGN
TTTCCCCCCNTGTTTCCANCTTATGGTCCAAAGGNTTGGGGGNGTTCCNTCCAATNCAAG
GANGCCNATNAAATTAGTGTTNCCNTGANGTNGAAAATGATCTGTCCAATACNACGCTTC
TGAANCTGTNTATATCAATTATAATTTGTCCTGTNCNCNAANTGANATTGGNCCCCGCCN
ACATTTTGCTGGGGCNTCCCGGAACCCCGTTTNAACAAAATCTNTCTTCCGAAGGCTNTT
TNATTAATCCNCGTTTTGCATTCCNGGGGTTTGNCTGGGGTTAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1442#0      GAGGATTCGGNACGANGGTGTTACTGNCNTGGGTCCAAATTTCNTTGTTACNCCCCCTGA 60
consensus_1442#1      ------------CGAGGNTGTTACTGTCNTGGTTCNAAATTTCNTTGTTACNCCCCCTGA 48
                                  *** * ******** ***** ** ************************

consensus_1442#0      ACNAANCTTGAATGTCCCCTTCNTGNGTTTCNGAAAAATTNTCCCNGGGNGTGGANNCNT 120
consensus_1442#1      ACTAANCTTGAATGTCCCNTTCNTGNGTTTCNGAAAAATTNTCNCAGGGNGTGGANACTT 108
                      ** *************** ************************ * ********** * *

consensus_1442#0      CCCCTTGANTTCCNANNCCTTCCAAAAAGNTATCCCTGGGCNNGCCCCCAANGANNTTAN 180
consensus_1442#1      CCCNTTGANTTCCNANNCNTTCCANAAAGNTNTCNCTGGNCNNGCCNCCAANGANNTTAT 168
                      *** ************** ***** ****** ** **** ****** ************ 

consensus_1442#0      NCNCCACNTTGTNCNTNCCAAGCNCCGGTNGGTGANNNCTGCNCCNGTCCCNCTTGCTGC 240
consensus_1442#1      GCNCNACNTTGTNCNTNCNAAGCNCNGGTNGGTGANNCCNGCNCCNNTCNCNCTTGCTGC 228
                       *** ************* ****** *********** * ****** ** **********

consensus_1442#0      NCNGTTCATNGNTTTCCCCCCNTGTTTCCAACTTATGGGCCAAANGTTTGGGGGGGTTCC 300
consensus_1442#1      NCNGTTCNTNGNTTTCCCCCCNTGTTTCCANCTTATGGTCCAAAGGNTTGGGGGNGTTCC 288
                      ******* ********************** ******* ***** * ******* *****

consensus_1442#0      CTCCAATCCCAAGAACCCCAATCNAATTAATGTTTCCCCTGAATTTGGAANAATTGATCT 360
consensus_1442#1      NTCCAATNC-AAGGANGCCNATNAAATTAGTGTTNCCN-TGANGTNGAAAA---TGATCT 343
                       ****** * *** *  ** **  ***** **** **  ***  * * **    ******

consensus_1442#0      TGTTCCAATAAAACGCTTCTGAAANCTGTATATATCAATTAATAATTTGTTCATGTCCTC 420
consensus_1442#1      --GTCCAATACNACGCTTCTGAANC-TGTNTATATCAATTA-TAATTTGTCC-TGTNCNC 398
                         *******  ***********   *** *********** ******** * *** * *

consensus_1442#0      CCNATTGAANATTGGTCCCTGNCAACATTTTTGCTGGGGCCATCCTGGAACGCCTGTTTT 480
consensus_1442#1      NAANT--GANATTGGNCCCCGCCNACATTTT-GCTGGGGCN-TCCCGGAAC-CCCGTTTN 453
                          *   ******* *** * * ******* ********  *** ***** ** **** 

consensus_1442#0      GAAACAAAATCTATCTTCNGAAGCNTNTNTNAT-GATTCACGTTTTGCATTC-AGGCGTC 538
consensus_1442#1      --AACAAAATCTNTCTTCCGAAGGCTNTTTNATTAATCCNCGTTTTGCATTCCNGGGGTT 511
                        ********** ***** ****  *** ****  ** * ************  ** ** 

consensus_1442#0      TG------------------- 540
consensus_1442#1      TGNCTGGGGTTAAAAAAAAAA 532
                      **