These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1442#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 540 fasta sequence [GAGGATTCGGNACGANGGTGTTACTGNCNTGGGTCCAAATTTCNTTGTTACNCCCCCTGAACNAANCTTGAATGTCCCCTTCNTGNGTTTCNGAAAAATTNTCCCNGGGNGTGGANNCNTCCCCTTGANTTCCNANNCCTTCCAAAAAGNTATCCCTGGGCNNGCCCCCAANGANNTTANNCNCCACNTTGTNCNTNCCAAGCNCCGGTNGGTGANNNCTGCNCCNGTCCCNCTTGCTGCNCNGTTCATNGNTTTCCCCCCNTGTTTCCAACTTATGGGCCAAANGTTTGGGGGGGTTCCCTCCAATCCCAAGAACCCCAATCNAATTAATGTTTCCCCTGAATTTGGAANAATTGATCTTGTTCCAATAAAACGCTTCTGAAANCTGTATATATCAATTAATAATTTGTTCATGTCCTCCCNATTGAANATTGGTCCCTGNCAACATTTTTGCTGGGGCCATCCTGGAACGCCTGTTTTGAAACAAAATCTATCTTCNGAAGCNTNTNTNATGATTCACGTTTTGCATTCAGGCGTCTG] [+] EMBL AA752803 [GAGGATTCGGNACGANGGTGTTACTGNCNTGGGTCCAAATTTCNTTGTTACNCCCCCTGAACNAANCTTGAATGTCCCCTTCNTGNGTTTCNGAAAAATTNTCCCNGGGNGTGGANNCNTCCCCTTGANTTCCNANNCCTTCCAAAAAGNTATCCCTGGGCNNGCCCCCAANGANNTTANNCNCCACNTTGTNCNTNCCAAGCNCCGGTNGGTGANNNCTGCNCCNGTCCCNCTTGCTGCNCNGTTCATNGNTTTCCCCCCNTGTTTCCAACTTATGGGCCAAANGTTTGGGGGGGTTCCCTCCAATCCCAAGAACCCCAATCNAATTAATGTTTCCCCTGAATTTGGAANAATTGATCTTGTTCCAATAAAACGCTTCTGAAANCTGTATATATCAATTAATAATTTGTTCATGTCCTCCCNATTGAANATTGGTCCCTGNCAACATTTTTGCTGGGGCCATCCTGGAACGCCTGTTTTGAAACAAAATCTATCTTCNGAAGCNTNTNTNATGATTCACGTTTTGCATTCAGGCGTCTG] consensusID : consensus_1442#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 532 fasta sequence [CGAGGNTGTTACTGTCNTGGTTCNAAATTTCNTTGTTACNCCCCCTGAACTAANCTTGAATGTCCCNTTCNTGNGTTTCNGAAAAATTNTCNCAGGGNGTGGANACTTCCCNTTGANTTCCNANNCNTTCCANAAAGNTNTCNCTGGNCNNGCCNCCAANGANNTTATGCNCNACNTTGTNCNTNCNAAGCNCNGGTNGGTGANNCCNGCNCCNNTCNCNCTTGCTGCNCNGTTCNTNGNTTTCCCCCCNTGTTTCCANCTTATGGTCCAAAGGNTTGGGGGNGTTCCNTCCAATNCAAGGANGCCNATNAAATTAGTGTTNCCNTGANGTNGAAAATGATCTGTCCAATACNACGCTTCTGAANCTGTNTATATCAATTATAATTTGTCCTGTNCNCNAANTGANATTGGNCCCCGCCNACATTTTGCTGGGGCNTCCCGGAACCCCGTTTNAACAAAATCTNTCTTCCGAAGGCTNTTTNATTAATCCNCGTTTTGCATTCCNGGGGTTTGNCTGGGGTTAAAAAAAAAA] [+] EMBL AA752739 [CGAGGNTGTTACTGTCNTGGTTCNAAATTTCNTTGTTACNCCCCCTGAACTAANCTTGAATGTCCCNTTCNTGNGTTTCNGAAAAATTNTCNCAGGGNGTGGANACTTCCCNTTGANTTCCNANNCNTTCCANAAAGNTNTCNCTGGNCNNGCCNCCAANGANNTTATGCNCNACNTTGTNCNTNCNAAGCNCNGGTNGGTGANNCCNGCNCCNNTCNCNCTTGCTGCNCNGTTCNTNGNTTTCCCCCCNTGTTTCCANCTTATGGTCCAAAGGNTTGGGGGNGTTCCNTCCAATNCAAGGANGCCNATNAAATTAGTGTTNCCNTGANGTNGAAAATGATCTGTCCAATACNACGCTTCTGAANCTGTNTATATCAATTATAATTTGTCCTGTNCNCNAANTGANATTGGNCCCCGCCNACATTTTGCTGGGGCNTCCCGGAACCCCGTTTNAACAAAATCTNTCTTCCGAAGGCTNTTTNATTAATCCNCGTTTTGCATTCCNGGGGTTTGNCTGGGGTTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1442#0 GAGGATTCGGNACGANGGTGTTACTGNCNTGGGTCCAAATTTCNTTGTTACNCCCCCTGA 60 consensus_1442#1 ------------CGAGGNTGTTACTGTCNTGGTTCNAAATTTCNTTGTTACNCCCCCTGA 48 *** * ******** ***** ** ************************ consensus_1442#0 ACNAANCTTGAATGTCCCCTTCNTGNGTTTCNGAAAAATTNTCCCNGGGNGTGGANNCNT 120 consensus_1442#1 ACTAANCTTGAATGTCCCNTTCNTGNGTTTCNGAAAAATTNTCNCAGGGNGTGGANACTT 108 ** *************** ************************ * ********** * * consensus_1442#0 CCCCTTGANTTCCNANNCCTTCCAAAAAGNTATCCCTGGGCNNGCCCCCAANGANNTTAN 180 consensus_1442#1 CCCNTTGANTTCCNANNCNTTCCANAAAGNTNTCNCTGGNCNNGCCNCCAANGANNTTAT 168 *** ************** ***** ****** ** **** ****** ************ consensus_1442#0 NCNCCACNTTGTNCNTNCCAAGCNCCGGTNGGTGANNNCTGCNCCNGTCCCNCTTGCTGC 240 consensus_1442#1 GCNCNACNTTGTNCNTNCNAAGCNCNGGTNGGTGANNCCNGCNCCNNTCNCNCTTGCTGC 228 *** ************* ****** *********** * ****** ** ********** consensus_1442#0 NCNGTTCATNGNTTTCCCCCCNTGTTTCCAACTTATGGGCCAAANGTTTGGGGGGGTTCC 300 consensus_1442#1 NCNGTTCNTNGNTTTCCCCCCNTGTTTCCANCTTATGGTCCAAAGGNTTGGGGGNGTTCC 288 ******* ********************** ******* ***** * ******* ***** consensus_1442#0 CTCCAATCCCAAGAACCCCAATCNAATTAATGTTTCCCCTGAATTTGGAANAATTGATCT 360 consensus_1442#1 NTCCAATNC-AAGGANGCCNATNAAATTAGTGTTNCCN-TGANGTNGAAAA---TGATCT 343 ****** * *** * ** ** ***** **** ** *** * * ** ****** consensus_1442#0 TGTTCCAATAAAACGCTTCTGAAANCTGTATATATCAATTAATAATTTGTTCATGTCCTC 420 consensus_1442#1 --GTCCAATACNACGCTTCTGAANC-TGTNTATATCAATTA-TAATTTGTCC-TGTNCNC 398 ******* *********** *** *********** ******** * *** * * consensus_1442#0 CCNATTGAANATTGGTCCCTGNCAACATTTTTGCTGGGGCCATCCTGGAACGCCTGTTTT 480 consensus_1442#1 NAANT--GANATTGGNCCCCGCCNACATTTT-GCTGGGGCN-TCCCGGAAC-CCCGTTTN 453 * ******* *** * * ******* ******** *** ***** ** **** consensus_1442#0 GAAACAAAATCTATCTTCNGAAGCNTNTNTNAT-GATTCACGTTTTGCATTC-AGGCGTC 538 consensus_1442#1 --AACAAAATCTNTCTTCCGAAGGCTNTTTNATTAATCCNCGTTTTGCATTCCNGGGGTT 511 ********** ***** **** *** **** ** * ************ ** ** consensus_1442#0 TG------------------- 540 consensus_1442#1 TGNCTGGGGTTAAAAAAAAAA 532 ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||