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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14422#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1122 fasta sequence
[CCACGAAACCTCGCCCTTCGTCTCCGCCTCCGTCGCCTCCATCTCGCCGCGATCCCTCTCCCCGGCGATGGCCGCCGCCCTCCGCTCCTCCTGCGCCGCCGCGCGCCGTCTGCTCCGGATCTCCCCGGCCGCGCTGTCCACCCTCACCGCCGCCTCCTCCCGCCCCGCCGCGGTGGCGCCCCTCGCGCGCCCGATCGCCGCCGCCGCCGTCTCAGGTGGCAACAATGCCTTTTCATGGAACTTGAGGCGCTTGTTCAGCTCAAATGAAAAGCATCTGCCGGCGATATCTGACCCAGAAGTTGAATCTGCGTTTAAGGATTTGATGGCTGCTAGCTGGACTGGACTTCCAGATTCTCTTGTAATTGAAGCAAAGAAAGCTGCATCCAAAGCTACGGATGATAAGGCTGGGAAAGAGGCTTTGCTAAATGTATTTCGTGCAGCTGAGGCATGTGAAGAATTTGGTGGAGTTCTAGTCACCCTAAGAATGGCTCTAGATGATCTTTGTGGTATAACTGGTGAGAATGTGGGCCCCTTGCCTGGTTATATAGAAGATGCTGTTAAATCTGCATATAAGCGTTACATGAAATATCTGGAATCATTTGGCCCGGAGGAAAATTATCTACGTAAGAAAGTGGAGAATGAGTTGGGGACTAAAATGATACACCTGAAAATGCGGTGCAGTGGTGTAGGGTCCGAGTGGGGAAAGATCACCCTGATTGGCACCTCAGGCATCTCAGGATCCTATGTCGAGCTAAGGGCATGAGGAAAGTCTGCAGATCATAACCATGGCAGAACATCGTTTTCTGAGGGAAGGATGCATATCAGAACAAGGTGTTCCGTTTCTC--TTTTCTTCTTACTGTGTAGCTACCTTGCCAATAACAAGGAGATCATCAAACAGATGTGCACTTAAAGTAATTCAGTGTGCTCCAGACCTTCCTGCTGTAATAAGAACGTGTTTCTGGGGTTCACGTCGATTTGTTTTTGCTCCAGTCATGGTGGTGCGTGAAGCATGTAGATTCAGTTGATTCCTTGCATGAGCCGTGAATTGTTTGTTCAAGCTCCTACTCTGTATGGCTCTATTGAACTCAGAAGTAGCTTAATCGGTGTTCAAAAAAAAAAAGA]
[+] EMBL AU166863 [CCACGAAACCTCGCCCTTCGTCTCCGCCTCCGTCGCCTCCATCTCGCCGCGATCCCTCTCCCCGGCGATGGCCGCCGCCCTCCGCTCCTCCTGCGCCGCCGCGCGCCGTCTGCTCCGGATCTCCCCGGCCGCGCTGTCCACCCTCACCGCCGCCTCCTCCCGCCCCGCCGCGGTGGCGCCCCTCGCGCGCCCGATCGCCGCCGCCGCCGTCTCAGGTGGCAACAATGCCTTTTCATGGAACTTGAGGCGCTTGTTCAGCTCAAATGAAAAGCATCTGCCGGCGATATCTGACCCAGAAGTTGAATCTGCGTTTAAGGATTTGATGGCTGCTAGCTGGACTGGACTTCCAGATTCTCTTGTAATTGAAGCAAAGAAAGCTGCATCCAAAGCTACGGATGATAAGGCTGGGAAAGAGGCTTTGCTAAATGT ]
[+] EMBL AK119714 [ GCCCTTCGTCTCCGCCTCCGTCGCCTCCATCTCGCCGCGATCCCTCTCCCCGGCGATGGCCGCCGCCCTCCGCTCCTCCTGCGCCGCCGCGCGCCGTCTGCTCCGGATCTCCCCGGCCGCGCTGTCCACCCTCACCGCCGCCTCCTCCCGCCCCGCCGCGGTGGCGCCCCTCGCGCGCCCGATCGCCGCCGCCGCCGTCTCAGGTGGCAACAATGCCTTTTCATGGAACTTGAGGCGCTTGTTCAGCTCAAATGAAAAGCATCTGCCGGCGATATCTGACCCAGAAGTTGAATCTGCGTTTAAGGATTTGATGGCTGCTAGCTGGACTGGACTTCCAGATTCTCTTGTAATTGAAGCAAAGAAAGCTGCATCCAAAGCTACGGATGATAAGGCTGGGAAAGAGGCTTTGCTAAATGTATTTCGTGCAGCTGAGGCATGTGAAGAATTTGGTGGAGTTCTAGTCACCCTAAGAATGGCTCTAGATGATCTTTGTGGTATAACTGGTGAGAATGTGGGCCCCTTGCCTGGTTATATAGAAGATGCTGTTAAATCTGCATATAAGCGTTACATGAAATATCTGGAATCATTTGGCCCGGAGGAAAATTATCTACGTAAGAAAGTGGAGAATGAGTTGGGGACTAAAATGATACACCTGAAAATGCGGTGCAGTGGTGTAGGGTCCGAGTGGGGAAAGATCACCCTGATTGGCACCTCAGGCATCTCAGGATCCTATGTCGAGCTAAGGGCATGAGGAAAGTCTGCAGATCATAACCATGGCAGAACATCGTTTTCTGAGGGAAGGATGCATATCAGAACAAGGTGTTCCGTTTCTC TTTTCTTCTTACTGTGTAGCTACCTTGCCAATAACAAGGAGATCATCAAACAGATGTGCACTTAAAGTAACTCAGTGTGCTCCAGACCTTCCTGCTGTAATAAGAACGTGTTTCTGGG ]
[+] EMBL CB672329 [ GCCCTCCTTCTCCGCCTCCGTCGCCTCCATCTCGCCGCGATCCCTCTCCCCGGCGATGGCCGCCGCCCTCCGCTCCTCCTGCGCCGCCGCGCGCCGTCTGCTCCGGATCTCCCCGGCCGCGCTGTCCACCCTCACCGCCGCCTCCTCCCGCCCCGCCGCGGTGGCGCCCCTCGCGCGCCCGATCGCCGCCGCCGCCGTCTCAGGTGGCAACAATGCCTTTTCATGGAACTTGAGGCGCTTGTTCAGCTCAAATGAAAAGCATCTGCCGGCGATATCTGACCCAGAAGTTGAATCTGCGTTTAAGGATTTGATGGCTGCTAGCTGGACTGGACTTCCAGATTCTCTTGTAATTGAAGCAAAGAAAGCTGCATCCAAAGCTACGGATGATAAGGCTGGGAAAGAGGCTTTGCTAAATGTATTTCGTGCAGCTGAGGCATGTGAAGAATTTGGTGGAGTTCTAGTCACCCTAAGAATGGCTCTAGATGATCTTTGTGGTATAACTGGTGAGAATGTGGGCCCCTTGCCTGGTTATATAGAAGATGCTGTTAAATCTGCATATAAGCGTTACATGAAATATCTGGAATCATTTGGCCCGGAGGAAAATTATCTACGTAAGAAAGTGGAGAATGAGTTGGGGACTAAAATGATACACCTGAAAATGCGGTGCAGTGGTGTAGGGTCCGAGTGGGGAAAGATCACCCTGATTGGCACCTCAGGCATCTCAGGATCCTATGTCGAGCTAAGGGCATGAG ]
[+] EMBL AK106155 [ CCCTTCGTCTCCGCCTCCGTCGCCTCCATCTCGCCGCGATCCCTCTCCCCGGCGATGGCCGCCGCCCTCCGCTCCTCCTGCGCCGCCGCGCGCCGTCTGCTCCGGATCTCCCCGGCCGCGCTGTCCACCCTCACCGCCGCCTCCTCCCGCCCCGCCGCGGTGGCGCCCCTCGCGCGCCCGATCGCCGCCGCCGCCGTCTCAGGTGGCAACAATGCCTTTTCATGGAACTTGAGGCGCTTGTTCAGCTCAAATGAAAAGCATCTGCCGGCGATATCTGACCCAGAAGTTGAATCTGCGTTTAAGGATTTGATGGCTGCTAGCTGGACTGGACTTCCAGATTCTCTTGTAATTGAAGCAAAGAAAGCTGCATCCAAAGCTACGGATGATAAGGCTGGGAAAGAGGCTTTGCTAAATGTATTTCGTGCAGCTGAGGCATGTGAAGAATTTGGTGGAGTTCTAGTCACCCTAAGAATGGCTCTAGATGATCTTTGTGGTATAACTGGTGAGAATGTGGGCCCCTTGCCTGGTTATATAGAAGATGCTGTTAAATCTGCATATAAGCGTTACATGAAATATCTGGAATCATTTGGCCCGGAGGAAAATTATCTACGTAAGAAAGTGGAGAATGAGTTGGGGACTAAAATGATACACCTGAAAATGCGGTGCAGTGGTGTAGGGTCCGAGTGGGGAAAGATCACCCTGATTGGCACCTCAGGCATCTCAGGATCCTATGTCGAGCTAAGGGCATGAGGAAAGTCTGCAGATCATAACCATGGCAGAACATCGTTTTCTGAGGGAAGGATGCATATCAGAACAAGGTGTTCCGTTTCTC TTTTCTTCTTACTGTGTAGCTACCTTGCCAATAACAAGGAGATCATCAAACAGATGTGCACTTAAAGTAATTCAGTGTGCTCCAGACCTTCCTGCTGTAATAAGAACGTGTTTCTGGGGTTCACGTCGATTTGTTTTTGCTCCAGTCATGGTGGTGCGTGAAGCATGTAGATTCAGTTGATTCCTTGCATGAGCCGTGAATTGTTTGTTCAAGCTCCTACTCTGTATGGCTCTATTGAACTCAGAAGTAGCTTAATCGGTGTTCA ]
[+] EMBL AK061030 [ CCCTTCGTCTCCGCCTCCGTCGCCTCCATCTCGCCGCGATCCCTCTCCCCGGCGATGGCCGCCGCCCTCCGCTCCTCCTGCGCCGCCGCGCGCCGTCTGCTCCGGATCTCCCCGGCCGCGCTGTCCACCCTCACCGCCGCCTCCTCCCGCCCCGCCGCGGTGGCGCCCCTCGCGCGCCCGATCGCCGCCGCCGCCGTCTCAGGTGGCAACAATGCCTTTTCATGGAACTTGAGGCGCTTGTTCAGCTCAAATGAAAAGCATCTGCCGGCGATATCTGACCCAGAAGTTGAATCTGCGTTTAAGGATTTGATGGCTGCTAGCTGGACTGGACTTCCAGATTCTCTTGTAATTGAAGCAAAGAAAGCTGCATCCAAAGCTACGGATGATAAGGCTGGGAAAGAGGCTTTGCTAAATGTATTTCGTGCAGCTGAGGCATGTGAAGAATTTGGTGGAGTTCTAGTCACCCTAAGAAGGGCTCTAGATGATCTTTGTGGTATAACTGGTGAGAATGTGGGCCCCTTGCCTGGTTATATAGAAGATGCTGTTAAATCTGCATATAAGCGTTACATGAAATATCTGGAATCATTTGGCCCGGAGGAAAATTATCTACGTAAGAAAGTGGAGAATGAGTTGGGGACTAAAATGATACACCTGAAAATGCGGTGCAGTGGTGTAGGGTCCGAGTGGGGAAAGATCACCCTGATTGGCACCTCAGGCATCTCAGGATCCTATGTCGAGCTAAGGGCATGAGGAAAGTCTGCAGATCATAACCATGGCAGAACATCGTTTTCTGAGGGAAGGATGCATATCAGAACAAGGTGTTCCGTTTCTC TTTTCTTCTTACTGTGTAGCTACCTTGCCAATAACAAGGAGATCATCAAACAGATGTGCACTTAAAGTAATTCAGTGTGCTCCAGACCTTCCTGCTGTAATAAGAACGTGTTTCTGGGGTTCACGTCGATTTGTTTTTGCTCCAGTCATGGTGGTGCGTGAAGCATGTAGATTCAGTTGATTCCTTGCATGAGCCGTGAATTGTTTGTTCAAGCTCCTACTCTGTATGGCTCTATTGAACTCAGAAGTAGCTTAATCGGT ]
[+] EMBL AK099124 [ CTCCGTCGCCTCCATCTCGCCGCGATCCCTCTCCCCGGCGATGGCCGCCGCCCTCCGCTCCTCCTGCGCCGCCGCGCGCCGTCTGCTCCGGATCTCCCCGGCAGCGCTGTCCACCCTCACCGCCGCCTCCTCCCGCCCCGCCGCGGTGGCGCCCCTCGCGCGCCCGATCGCCGCCGCCGCCGTCTCAGGTGGCAACAATGCCTTTTCATGGAACTTGAGGCGCTTGTTCAGCTCAAATGAAAAGCATCTGCCGGCGATATCTGACCCAGAAGTTGAATCTGCGTTTAAGGATTTGATGGCTGCTAGCTGGACTGGACTTCCAGATTCTCTTGTAATTGAAGCAAAGAAAGCTGCATCCAAAGCTACGGATGATAAGGCTGGGAAAGAGGCTTTGCTAAATGTATTTCGTGCAGCTGAGGCATGTGAAGAATTTGGTGGAGTTCTAGTCACCCTAAGAATGGCTCTAGATGATCTTTGTGGTATAACTGGTGAGAATGTGGGCCCCTTGCCTGGTTATATAGAAGATGCTGTTAAATCTGCATATAAGCGTTACATGAAATATCTGGAATCATTTGGCCCGGAGGAAAATTATCTACGTAAGAAAGTGGAGAATGAGTTGGGGACTAAAATGATACACCTGAAAATGCGGTGCAGTGGTGTAGGGTCCGAGTGGGGAAAGATCACCCTGATTGGCACCTCAGGCATCTCAGGATCCTATGTCGAGCTAAGGGCATGAGGAAAGTCTGCAGATCATAACCATGGCAGAACATCGTTTTCTGAGGGAAGGATGCATATCAGAACAAGGTGTTCCGTTTCTCTTTTTTCTTCTTACTGTGTAGCTACCTTGCCAATAACAAGGAGATCATCAAACAGATGTGCACTTAAAGTAATTCAGTGTGCTCCAGACCTTCCTGCTGTAATAAGAACGTGTTTCTGGGGTTCACGTCGATTTGTTTTTGCTCCAGTCATGGTGGTGCGTGAAGCATGT ]
[+] EMBL AU069356 [ TCGCCTCCATCTCGCCGCGATCCCTCTCCCCGGCGATGGCCGCCGCCCTCCGCTCCTCCTGCGCCGCCGCG GCCGTCTGCTCCGGATCTCCCCGGCCGCGCTGTCCACCCTCACCGCCGCCTCCTCCCGCCCCGCCGCGGTGGCGCCCCTCGCGCGCCCGATCGCCGCCGCCGCCGTCTCAGGTGGCAACAATGCCTTTTCATGGAACTTGAGGCGCTTGTTCAGCTCAAATGAAAAGCATCTGCCGGCGATATCTGACCCAGAAGTTGAATCTGCGTTTAAGGATTTGATGGCTGCTAGCTGGACTGGA TTCCAGATTCTCTTGTAATTGAAGCAAAGAAAGCTGCATCCAAAGCTACGGATGATAAGGCTGGGAAAGAAGCT ]
[+] EMBL CA999219 [ gCGTCGCCGCCGCCGTCTCAGGTGGCAACAATGCCTTTTCATGGAACTTGAGGCGCTTGTTCAGCTCAAATGAAAAGCATCTGCCGGCGATATCTGACCCAGAAGTTGAATCTGCGTTTAAGGATTTGATGGCTGCTAGCTGGACTGGACTTCCAGATTCTCTTGTAATTGAAGCAAAGAAAGCTGCATCCAAAGCTACGGATGATAAGGCTGGGAAAGAGGCTTTGCTAAATGTATTTCGTGCAGCTGAGGCATGTGAAGAATTTGGTGGAGTTCTAGTCACCCTAAGAATGGCTCTAGATGATCTTTGTGGTATAACTGGTGAGAATGTGGGCCCCTTGCCTGGTTATATAGAAGATGCTGTTAAATCTGCATATAAGCGTTACATGAAATATCTGGAATCATTTGGCCCGGAGGAAAATTATCTACGTAAGAAAGTGGAGAATGAGTTGGGGACTAAAATGATACACCTGAAAATGCGG ]
[-] EMBL CB672330 [ TGATGGCTGCTAGCTGGACTGGACTTCCAGATTCTCTTGTAATTGAAGCAAAGAAAGCTGCATCCAAAGCTACGGATGATAAGGCTGGGAAAGAGGCTTTGCTAAATGTATTTCGTGCAGCTGAGGCATGTGAAGAATTTGGTGGAGTTCTAGTCACCCTAAGAATGGCTCTAGATGATCTTTGTGGTATAACTGGTGAGAATGTGGGCCCCTTGCCTGGTTATATAGAAGATGCTGTTAAATCTGCATATAAGCGTTACATGAAATATCTGGAATCATTTGGCCCGGAGGAAAATTATCTACGTAAGAAAGTGGAGAATGAGTTGGGGACTAAAATGATACACCTGAAAATGCGGTGCAGTGGTGTAGGGTCCGAGTGGGGAAAGATCACCCTGATTGGCACCTCAGGCATCTCAGGATCCTATGTCGAGCTAAGGGCATGAGGAAAGTCTGCAGATCATAACCATGGCAGAACATCGTTTTCTGAGGGAAGGATGCATATCAGAACAAGGTGTTCCGTTTCTC TTTTCTTCTTACTGTGTAGCTACCTTGCCAATAACAAGGAGATCATCAAACAGATGTGCACTTAAAGTAATTCAGTGTGCTCCAGACCTTCCTGCTGTAATAAGAACGTGTTTCTGGGGTTCACGTCGATTTGTTTTTGCTCCAGTCATGGTGGTGCGTGAAGCATGTAGATTCAGTTGATTCCTTGCATGAGCCGTGAATTGTTTGTTCAAGCTCCTACTCTGTATGGCTCTATTGAACTCAGAAGTAGCTTAATCGGTGTTCAAAAAAAAAAAGA]
[+] EMBL BQ906905 [ ATTTGGTGGAGTTCTAGTCACCCTAAGAATGGCTCTAGATGATCTTTGTGGTATAACTGGTGAGAATGTGGGCCCCTTGCCTGGTTATATAGAAGATGCTGTTAAATCTGCATATAAGCGTTACATGAAATATCTGGAATCATTTGGCCCGGAGGAAAATTATCTACGTAAGAAAGTGGAGAATGAGTTGGGGACTAAAATGATACACCTGAAAATGCGGTGCAGTGGTGTAGGGTCCGAGTGGGGAAAGATCACCCTGATTGGCACCTCAGGCATCTCAGGATCCTATGTCGAGCTAAGGGCATGAGGAAAGTCTGCAGATCATAACCATGGCAGAACATCGTTTTCTGAGGGAAGGATGCATATCAGAACAAGGTGTTCCGTTTCTC TTTTCTTATTACTGTGTAGCTACCTTGCC ATAACCAGGAGATCATCAAACAGATGTGCACTTAAAGTAATTCAGTGTGCTCCAGACCTTCCTGCTGTAATAAGAACGTGTTTCTGGGGTTCAaaaaaaa ]
[+] EMBL AU100810 [ GTGTTCCGTTNCTC TTTTCTNCTTACTGTGTAGCTACNNTGCCAATAACAAGGAGATCATCAANCAGATGTGCNCTTAAAGTAATTCAGTGTGCTCCAGACCTTCCTGCTGTAATAAGAACGTNTTTCTGGGGTCCNCGTCGATTTGTTTTTGCTCCAGTCATGGTGGTGCGTGAAGCATGTAGATTCAGTTGATTCCTTGCATGAGCCGTGAATTGTTTGTTCAAGCTCCTACTNTGTATGGCTCTATTGAACTCAGAAGTAGCTTAATCGGTGTTCAAAAAAAAAAAa ]
consensusID : consensus_14422#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 716 fasta sequence
[TCCGTCGCCTCCATCTCGCCGCGATCCCTCTCCCCGGCGATGGCCGCCGCCCTCCGCTCCTCCTGCGCCGCCGCGCGCCGTCTGCTCCGGATCTCCCCGGCCGCGCTGTCCACCCTCACCGCCGCCTCCTCCCGCCCCGCCGCGGTGGCGCCCCTCGCGCGCCCGATCGCCGCCGCCGCCGTCTCAGGTGGCAACAATGCCTTTTCATGGAACTTGAGGCGCTTGTTCAGCTCAAATGAAAAGCATCTGCCGGCGATATCTGACCCAGAAGTTGAATCTGCGTTTAAGGATTTGATGGCTGCTAGCTGGACTGGACTTCCAGAATCTCTTGGAATTGAAGCCAAGAAAGCTGCATCCAAAGCTACGGATGATAAGGCTTGGAAAGAAGCTTTGCTTAATGGATTTCGTGCAGCTGAGGCATGTGAAGAATTTGGGTGAGGTCTAGTCACCCTAAGAATGGCTCTAGATGACTTTGGGGATTACTGGTGAGAATGTGGGCCCTTGGCTGGTATATAGAAGAGCTCGTAATCTGGTATAGCGGTCATGAATATCTGGATCATTTGGCTGAGGAAATTTCTCGGAGAAGTGGTAATGAGTGGGGCTTAATGTACCCTGAAAGCCGGCAGGGGAAGGTCCAAGGGAAGAGCCCCTGTGCCCTAGGCTNTAGATCTTGCGCTTAGGTTGAGAGTTGCAACTACATGTGACATATTTTGGGA]
[+] EMBL AW155290 [TCCGTCGCCTCCATCTCGCCGCGATCCCTCTCCCCGGCGATGGCCGCCGCCCTCCGCTCCTCCTGCGCCGCCGCGCGCCGTCTGCTCCGGATCTCCCCGGCCGCGCTGTCCACCCTCACCGCCGCCTCCTCCCGCCCCGCCGCGGTGGCGCCCCTCGCGCGCCCGATCGCCGCCGCCGCCGTCTCAGGTGGCAACAATGCCTTTTCATGGAACTTGAGGCGCTTGTTCAGCTCAAATGAAAAGCATCTGCCGGCGATATCTGACCCAGAAGTTGAATCTGCGTTTAAGGATTTGATGGCTGCTAGCTGGACTGGACTTCCAGAATCTCTTGGAATTGAAGCCAAGAAAGCTGCATCCAAAGCTACGGATGATAAGGCTTGGAAAGAAGCTTTGCTTAATGGATTTCGTGCAGCTGAGGCATGTGAAGAATTTGGGTGAGGTCTAGTCACCCTAAGAATGGCTCTAGATGACTTTGGGGATTACTGGTGAGAATGTGGGCCCTTGGCTGGTATATAGAAGAGCTCGTAATCTGGTATAGCGGTCATGAATATCTGGATCATTTGGCTGAGGAAATTTCTCGGAGAAGTGGTAATGAGTGGGGCTTAATGTACCCTGAAAGCCGGCAGGGGAAGGTCCAAGGGAAGAGCCCCTGTGCCCTAGGCTNTAGATCTTGCGCTTAGGTTGAGAGTTGCAACTACATGTGACATATTTTGGGA]
consensusID : consensus_14422#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 585 fasta sequence
[GTGCATGTGTAGGTCCGA-TGGGGAAAGATCACCCTGATTGGCACCTCAGGCATCTCAGGATCCTATGTCGAGCTAAGGGCATGAGGAAAGTCTGCAGATCATAACCAT-GCAGAACATCGTTTTCTGAGGGAAGGATGCATATCAGAACAAGGTGTTCCGTTTCTCGTTTTCTTATTACTGTGTAGCTACCTTGCCAATAACAAGGAGATCATCAAACAGATGTGCACTTAAAGTAATTTCAGTGTGCTCCAGACCTTCCTGCTGTAATAAGAACGTGTTTCTGGGGTTCACGTCGATTTGTTTTTGCTCCAGTCATGGTGGTGCGTGAAGCATGTAGATTCAGTTGATTCCTTGCATGAGCCGTGAATTGTTTGTTCAAGCTCCTACTCTGTATGGCTCTATTGAACTCAGAAGTAGCTTAATCGGTGTTC-AATTCCTTGCATGAGCCCTGATATGAGCTCTATTGAGTACTTCCTTCATTTTATAATGTAAGACTTTCTTATATTAAAAAAAAAAAAAANNAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAANAAAAAAA]
[+] EMBL BI796716 [GTGCATGTGTAGGTCCGA TGGGGAAAGATCACCCTGATTGGCACCTCAGGCATCTCAGGATCCTATGTCGAGCTAAGGGCATGAGGAAAGTCTGCAGATCATAACCAT GCAGAACATCGTTTTCTGAGGGAAGGATGCATATCAGAACAAGGTGTTCCGTTTCTCGTTTTCTTATTACTGTGTAGCTACCTTGCCAATAACAAGGAGATCATCAAACAGATGTGCACTTAAAGTAATTTCAGTGTGCTCCAGACCTTCCTGCTGTAATAAGAACGTGTTTCTGGGGTTCACGTCGATTTGTTTTTGCTCCAGTCATGGTGGTGCGTGAAGCATGTAGATTCAGTTGATTCCTTGCATGAGCCGTGAATTGTTTGTTCAAGCTCCTACTCTGTATGGCTCTATTGAACTCAGAAGTAGCTTAATCGGTGTTC AATTCCTTGCATGAGCCCTGATATGAGCTCTATTGAGTACTTCCTTCATTTTATAATGTAAGACTTTCTTATATTAAAAAAA ]
[+] EMBL CA757804 [ agGGTCCGAGTGGGGAAAGATCACCCTGATTGGCACCTCAGGCATCTCAGGATCCTATGTCGAGCTAAGGGCATGAGGAAAGTCTGCAGATCATAACCATGGCAGAACATCGTTTTCTGAGGGAAGGATGCATATCAGAACAAGGTGTTCCGTTTCTC TTTTCTTCTTACTGTGTAGCTACCTTGCCAATAACAAGGAGATCATCAAACAGATGTGCACTTAAAGTAA TTCAGTGTGCTCCAGACCTTCCTGCTGTAATAAGAACGTGTTTCTGGGGTTCACGTCGATTTGTTTTTGCTCCAGTCATGGTGGTGCGTGAAGCATGTAGATTCAGTTGATTCCTTGCATGAGCCGTGAATTGTTTGTTCAAGCTCCTACTCTGTATGGCTCTATTGAACTCAGAAGTAGCTTAATCGGTGTTCAAATTCCTTGCATGAGCCCTGATATGAGCTCTATTGAGTACTTCCTTCATTTTATAATGTAAGACTTTCTTATATTAAAAAAAAAAAAAANNAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAANAAAAAAA]
consensusID : consensus_14422#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 434 fasta sequence
[CGCCTCCATCTCGCCGCGATCCCTTTTCCCCGGCGATGGNCCGCCGNCCCTCCGGTTCTTCTTGCGCCCGCCGCGCGCCGTCTGNTTCGGGATCTCCCCGGGCCGGCTTGTCCACCCTTAACCGGCCGCTTCNTCCCGCCCCGCCGGGGGTGGCGCCCTTCGCGCGCCCGATCGNCGGCGGCGGCCGTCTNAGGTGGGCAACAATGCCTTTTCATGGAACTTGAGGCGCTTGTTCAGCTCAAATGAAAAGCATCTGCCGGCGATATCTGACCCAGAAGTTGAATCTGCGTTTAAGGATTTGATGGCTGCTAGCTGGACTGGACTTCCAGATTCTCTTGTAATTGAAGCAAAGAAAGCTGGATCCAAAGCTACGGATGATAANGGCTGGGAAAGAGGCTTTGCTAAATGTATTTCGTGCAGCTGANGCATGTGAA]
[+] EMBL AU173973 [CGCCTCCATCTCGCCGCGATCCCTTTTCCCCGGCGATGGNCCGCCGNCCCTCCGGTTCTTCTTGCGCCCGCCGCGCGCCGTCTGNTTCGGGATCTCCCCGGGCCGGCTTGTCCACCCTTAACCGGCCGCTTCNTCCCGCCCCGCCGGGGGTGGCGCCCTTCGCGCGCCCGATCGNCGGCGGCGGCCGTCTNAGGTGGGCAACAATGCCTTTTCATGGAACTTGAGGCGCTTGTTCAGCTCAAATGAAAAGCATCTGCCGGCGATATCTGACCCAGAAGTTGAATCTGCGTTTAAGGATTTGATGGCTGCTAGCTGGACTGGACTTCCAGATTCTCTTGTAATTGAAGCAAAGAAAGCTGGATCCAAAGCTACGGATGATAANGGCTGGGAAAGAGGCTTTGCTAAATGTATTTCGTGCAGCTGANGCATGTGAA]
consensusID : consensus_14422#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 432 fasta sequence
[GGAAAGATCACCCTGATTGGCACCTCAGGCATCTCAGGATCCTATGTCGAGCTAAGGGCATGAGGAAAGTCTGCAGATCATAACCATGGCAGAACATCGTTTTTTGAGGGAAGGATGCATATCAGAACAAGGTGTTCCGTTTCTCTTTTCTTCTTACTGTGTAGCTACCTTGCCAATAACAAGGAGATCATCAAACAGATGTGCACTTAAAGTAATTCAGTGTGCTCCAGACCTTCCTGCTGTAATAAGAACGTGTTTCTGGGGTTCACGTCGATTTGTTTTTGCTCCAGTCATGGTGGTGCGTGAAGCATGTAGATTCAGTTGATTCCTTGCATGAGCCGTGAATTGTTTGTTCAAGCTCCTACTCTGTATGGCTCTATTGAACTCAGAAGTAGCTTAATCGGTGTTCAGATTCCTTGCAAAAAAAAAAAA]
[+] EMBL AU173974 [GGAAAGATCACCCTGATTGGCACCTCAGGCATCTCAGGATCCTATGTCGAGCTAAGGGCATGAGGAAAGTCTGCAGATCATAACCATGGCAGAACATCGTTTTTTGAGGGAAGGATGCATATCAGAACAAGGTGTTCCGTTTCTCTTTTCTTCTTACTGTGTAGCTACCTTGCCAATAACAAGGAGATCATCAAACAGATGTGCACTTAAAGTAATTCAGTGTGCTCCAGACCTTCCTGCTGTAATAAGAACGTGTTTCTGGGGTTCACGTCGATTTGTTTTTGCTCCAGTCATGGTGGTGCGTGAAGCATGTAGATTCAGTTGATTCCTTGCATGAGCCGTGAATTGTTTGTTCAAGCTCCTACTCTGTATGGCTCTATTGAACTCAGAAGTAGCTTAATCGGTGTTCAGATTCCTTGCAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14422#1 ----------------------------TCCGTCGCCTCCATCTCGCCGCGATCCCTCT- 31
consensus_14422#3 ---------------------------------CGCCTCCATCTCGCCGCGATCCCTTTT 27
consensus_14422#0 CCACGAAACCTCGCCCTTCGTCTCCGCCTCCGTCGCCTCCATCTCGCCGCGATCCCTCT- 59
consensus_14422#2 ------------------------------------------------GTGCATGTGTAG 12
consensus_14422#4 ------------------------------------------------------------
consensus_14422#1 CCCCGGCGATGGCC-GCCGCCCTCC---GCTCCTCCTGCGCC-GCCGCGCGCCGTCTGCT 86
consensus_14422#3 CCCCGGCGATGGNCCGCCGNCCCTCC-GGTTCTTCTTGCGCCCGCCGCGCGCCGTCTGNT 86
consensus_14422#0 CCCCGGCGATGGCC-GCCGCCCTCC---GCTCCTCCTGCGCC-GCCGCGCGCCGTCTGCT 114
consensus_14422#2 GTCCGATGGGGAAAGATCACCCTGATTGGCACCTCAGGCATC-TCAGGATCCTATGTCGA 71
consensus_14422#4 ---------GGAAAGATCACCCTGATTGGCACCTCAGGCATC-TCAGGATCCTATGTCGA 50
* * ** * * ** ** * * * * * *
consensus_14422#1 CCGG-ATCTCCCCGG-CCGCGCTGTCCACCCTCACC--GCCGCCTCCTCCCGCCCCGCCG 142
consensus_14422#3 TCGGGATCTCCCCGGGCCGGCTTGTCCACCCTTAACCGGCCGCTTCNTCCCGCCCCGCCG 146
consensus_14422#0 CCGG-ATCTCCCCGG-CCGCGCTGTCCACCCTCACC--GCCGCCTCCTCCCGCCCCGCCG 170
consensus_14422#2 GCTA-AGGGCATGAGGAAAGTCTGCAGATCATAACCATG-CAGAACATCGTTTTCTGAGG 129
consensus_14422#4 GCTA-AGGGCATGAGGAAAGTCTGCAGATCATAACCATGGCAGAACATCGTTTTTTGAGG 109
* * * * ** * * * * * * * * ** * *
consensus_14422#1 CGG-TGGCGCCCCTCGCGCGCCCGATCGCCGCCGCCG-CCGTCTCAGGTGG-CAACAATG 199
consensus_14422#3 GGGGTGGCGCCCTTCGCGCGCCCGATCGNCGGCGGCGGCCGTCTNAGGTGGGCAACAATG 206
consensus_14422#0 CGG-TGGCGCCCCTCGCGCGCCCGATCGCCGCCGCCG-CCGTCTCAGGTGG-CAACAATG 227
consensus_14422#2 GAA-GGATGCATATCA-GAACAAGGTGTTCCGTTTCT-CGTTTTCTTATTA-CTGTGTAG 185
consensus_14422#4 GAA-GGATGCATATCA-GAACAAGGTGTTCCGTTTCT-C-TTTTCTTCTTA-CTGTGTAG 164
* ** ** * * * * * * * * * * * *
consensus_14422#1 CCTTTTCATGGAACTTGAGGCGCTTGTTCAGCTCAAATGAAAAGCATCTGCCGGCGATAT 259
consensus_14422#3 CCTTTTCATGGAACTTGAGGCGCTTGTTCAGCTCAAATGAAAAGCATCTGCCGGCGATAT 266
consensus_14422#0 CCTTTTCATGGAACTTGAGGCGCTTGTTCAGCTCAAATGAAAAGCATCTGCCGGCGATAT 287
consensus_14422#2 CTACCTTGCCAATAACAAGGAGATCATCAAACAGATGTGCACTTAAAGTAATTTCAGTG- 244
consensus_14422#4 CTACCTTGCCAATAACAAGGAGATCATCAAACAGATGTGCACTTAAAGTAATT-CAGTG- 222
* * * *** * * * * * * ** * * * * *
consensus_14422#1 CTGACCCAGAAGTTGAATCTGCGTTTAAGGATTTGATGGCTGCTAGCTGGACTGGACTTC 319
consensus_14422#3 CTGACCCAGAAGTTGAATCTGCGTTTAAGGATTTGATGGCTGCTAGCTGGACTGGACTTC 326
consensus_14422#0 CTGACCCAGAAGTTGAATCTGCGTTTAAGGATTTGATGGCTGCTAGCTGGACTGGACTTC 347
consensus_14422#2 -TGCTCCAGACCTTCCTGCTGTAAT-AAGAACGTGTTTCTGG--GGTTCACGTCGATTTG 300
consensus_14422#4 -TGCTCCAGACCTTCCTGCTGTAAT-AAGAACGTGTTTCTGG--GGTTCACGTCGATTTG 278
** ***** ** *** * *** * ** * * * * * ** **
consensus_14422#1 CAGAATCTCTTGGAATTGAAGCCAAGAAAGCTGCATCCAAAGCTACGGATGATAAGG-CT 378
consensus_14422#3 CAGATTCTCTTGTAATTGAAGCAAAGAAAGCTGGATCCAAAGCTACGGATGATAANGGCT 386
consensus_14422#0 CAGATTCTCTTGTAATTGAAGCAAAGAAAGCTGCATCCAAAGCTACGGATGATAAGG-CT 406
consensus_14422#2 TTTTTGCTCCAGTCATGGTGGTGCGTGAAGC---ATGTAGA--TTCAGTTGATTCCTTGC 355
consensus_14422#4 TTTTTGCTCCAGTCATGGTGGTGCGTGAAGC---ATGTAGA--TTCAGTTGATTCCTTGC 333
*** * ** * * **** ** * * * * * ****
consensus_14422#1 TGGAAAGAAGCTTTGCTTAATGGATTTCGTGCAGCTGAGGCATGTGAAGAATTTGGGTGA 438
consensus_14422#3 GGGAAAGAGGCTTTGCTAAATGTATTTCGTGCAGCTGANGCATGTGAA------------ 434
consensus_14422#0 GGGAAAGAGGCTTTGCTAAATGTATTTCGTGCAGCTGAGGCATGTGAAGAATTTGGTGGA 466
consensus_14422#2 ATGAGCCGTGAATTGTTTGTTCAAGCTCCTACTCTGTATGGCTCTATTGAACTCAGAAGT 415
consensus_14422#4 ATGAGCCGTGAATTGTTTGTTCAAGCTCCTACTCTGTATGGCTCTATTGAACTCAGAAGT 393
** * *** * * * ** * * * * * *
consensus_14422#1 GGTCTAGTCACCCTAAGAATGGCTCTAGATGACTTTGGGG--ATTACTGGTGAGAATGTG 496
consensus_14422#3 ------------------------------------------------------------
consensus_14422#0 GTTCTAGTCACCCTAAGAATGGCTCTAGATGATCTTTGTGGTATAACTGGTGAGAATGTG 526
consensus_14422#2 AGCTTAATCGGTGTTCA-ATTCCTTGCATGAGCCCTGATATGAGCTCTATTGAGTACTTC 474
consensus_14422#4 AGCTTAATCGGTGTTCAGATTCCTTGCAAAAAAAAAAAA--------------------- 432
consensus_14422#1 GGCCCTTGGCTGG--TATATAGAAGAGCTCGT--AATCTG-GTATAGCGGTCATG---AA 548
consensus_14422#3 ------------------------------------------------------------
consensus_14422#0 GGCCCCTTGCCTGGTTATATAGAAGATGCTGTTAAATCTGCATATAAGCGTTACATGAAA 586
consensus_14422#2 CTTCATTTTATAATGTAAGACTTTCTTATATTAAAAAAAAAAAAAANNAAANAAAAAAAA 534
consensus_14422#4 ------------------------------------------------------------
consensus_14422#1 TATCTGGA-TCATTTGGCT----GAGGAAATTTCTCGGAGAAGTGGTAATGAGTGGGGCT 603
consensus_14422#3 ------------------------------------------------------------
consensus_14422#0 TATCTGGAATCATTTGGCCCGGAGGAAAATTATCTACGTAAGAAAGTGGAGAATGAGTTG 646
consensus_14422#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAANAAAAAAA--------- 585
consensus_14422#4 ------------------------------------------------------------
consensus_14422#1 TAATGTACCCTGAAAGCCGGCAGGGGAAGGTCCAAGGGAAGAGCCCCTGTGCCCTAGGCT 663
consensus_14422#3 ------------------------------------------------------------
consensus_14422#0 GGGACTAAAATGATACACCTGAAAATGCGGTGCAGTGGTGTAGGGTCCGAGTGGGGAAAG 706
consensus_14422#2 ------------------------------------------------------------
consensus_14422#4 ------------------------------------------------------------
consensus_14422#1 NTAGATCTTGCGCTTAGGTTGAGAGTTGCAACTACATGTGACATATTTTGGGA------- 716
consensus_14422#3 ------------------------------------------------------------
consensus_14422#0 ATCACCCTGATTGGCACCTCAGGCATCTCAGGATCCTATGTCGAGCTAAGGGCATGAGGA 766
consensus_14422#2 ------------------------------------------------------------
consensus_14422#4 ------------------------------------------------------------
consensus_14422#1 ------------------------------------------------------------
consensus_14422#3 ------------------------------------------------------------
consensus_14422#0 AAGTCTGCAGATCATAACCATGGCAGAACATCGTTTTCTGAGGGAAGGATGCATATCAGA 826
consensus_14422#2 ------------------------------------------------------------
consensus_14422#4 ------------------------------------------------------------
consensus_14422#1 ------------------------------------------------------------
consensus_14422#3 ------------------------------------------------------------
consensus_14422#0 ACAAGGTGTTCCGTTTCTCTTTTCTTCTTACTGTGTAGCTACCTTGCCAATAACAAGGAG 886
consensus_14422#2 ------------------------------------------------------------
consensus_14422#4 ------------------------------------------------------------
consensus_14422#1 ------------------------------------------------------------
consensus_14422#3 ------------------------------------------------------------
consensus_14422#0 ATCATCAAACAGATGTGCACTTAAAGTAATTCAGTGTGCTCCAGACCTTCCTGCTGTAAT 946
consensus_14422#2 ------------------------------------------------------------
consensus_14422#4 ------------------------------------------------------------
consensus_14422#1 ------------------------------------------------------------
consensus_14422#3 ------------------------------------------------------------
consensus_14422#0 AAGAACGTGTTTCTGGGGTTCACGTCGATTTGTTTTTGCTCCAGTCATGGTGGTGCGTGA 1006
consensus_14422#2 ------------------------------------------------------------
consensus_14422#4 ------------------------------------------------------------
consensus_14422#1 ------------------------------------------------------------
consensus_14422#3 ------------------------------------------------------------
consensus_14422#0 AGCATGTAGATTCAGTTGATTCCTTGCATGAGCCGTGAATTGTTTGTTCAAGCTCCTACT 1066
consensus_14422#2 ------------------------------------------------------------
consensus_14422#4 ------------------------------------------------------------
consensus_14422#1 --------------------------------------------------------
consensus_14422#3 --------------------------------------------------------
consensus_14422#0 CTGTATGGCTCTATTGAACTCAGAAGTAGCTTAATCGGTGTTCAAAAAAAAAAAGA 1122
consensus_14422#2 --------------------------------------------------------
consensus_14422#4 --------------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||