|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14437#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1442 fasta sequence
[CTGCGCCGCCTCCCTCGTCTCGTCTCGTTCCTCCCTCTCCGGCGGCCGGATCGGCGAACCCCCTCCCGCCGCCGCACGCGCGCGCGCTCCCCGGCTTCGCCGCCGAGCAGAGGGGTAGCGGAGGCTAGGGCTCCCTTCCGGGAACTTAACTTCCAACTTCAAGATGTTCCCCCCAGGCAACAATTCTTTGGCTCTTTCAGCCCCAAGGCCAGGAATGGAGCTGGCTAACATTCAACAGCATCCTAATCAAGCTCTTGGGCCTGGTGGGAAGCAACGTACATCCAGTCTGGAGGCCCCAATAATGCTACTCACAGGCCATCAGAGCGCTGTGTACTGTATGAAGTTCAACCCTGCAGGAACTGTGATAGCATCAGGCTCCCATGACAAGGATATCTTC-TTGTGGTATGTCCATGGTGACTGTAAGAACTACATGGTACTGAGAGGGCACAAGAATGCTGTTCTTGACCTTCAATGGACTACTGATGGGACTCAGATCATCTCTGCAAGCCCTGACAAGACTGTGAGAGTGTGGGACGTTGAGACTGGCAAGCAAGTCAAGAAGATGGCCGAGCACTCATCTTTTGTCAACTCATGTTGCCCGGCTCGAAAGTGGCCACCTCTGGTTGTAAGTGGATCGGATGATGGAACAGCAAAGCTGTGGGATTTGCGTCAAAGAGGTGCTATACAAACACTTCCCGACAAGTACCAGATTACAGCCGTCAGCTTCTCAGAGGCGGCAGATAAGGTTTTCACTGGTGGCCTAGACAATG-ATGTC-AAATGGTGGGATCTCCGTAAGAATGAAGTGACAGAGTATCTCAAAGGACACCAGGACATGATAACCGGAATGCAGCTTAGTCCAGATGGGTCTTATCTCCTAACCAATGCAATGGACAATGAGCTCAAAATCTGGGACTTGC-GCCCTTACGCCCCAGAGAACCGGAACATCAAGACCCTCACAGGACACCAGCATAACTTTGAGAAGAACCTGTTGAAGTGCAGC-TGGTCCCCTGATAATCGCAAGGTCAC-TGCCGGGAGTGCTGATCGCATGGTCTACATC-TGGGACACAACATCAAGGCGGATCTTGTACAAGCTTCCTGGCCACAACGGTTCTGTCAACGAGACCGCATTCCATCCCACCGAGCCTGTCATTGGATCTTGCGGCAGTGACAAGCAGATTTATCTTGGGGAGCTTTAAGGGTACTACCATCACATTTTCATCTAGAAGCTATTGTACTATCTTGTTATGAAGGCAAACAGAAACTACCATCCTTGCAATGTTTCTTCATCTGAAAAATTCTAATGCACGATTGACTGACCAGAATCTCCTTTGTAGATTGTATTGAGGCCAGTGGGTCTTTTCAAACTTCTCCATGTTCTGTGCCTTCATCATTCATGTTAT-CCTACCTGTGACTATTCTGCCGAAAAAAAAAAAAAAAAAAAGG]
[+] EMBL AK103633 [CTGCGCCGCCTCCCTCGTCTCGTCTCGTTCCTCCCTCTCCGGCGGCCGGATCGGCGAACCCCCTCCCGCCGCCGCACGCGCGCGCGCTCCCCGGCTTCGCCGCCGAGCAGAGGGGTAGCGGAGGCTAGGGCTCCCTTCCGGGAACTTAACTTCCAACTTCAAGATGTTCCCCCCAGGCAACAATTCTTTGGCTCTTTCAGCCCCAAGGCCAGGAATGGAGCTGGCTAACATTCAACAGCATCCTAATCAAGCTCTTGGGCCTGGTGGGAAGCAACGTACATCCAGTCTGGAGGCCCCAATAATGCTACTCACAGGCCATCAGAGCGCTGTGTACTGTATGAAGTTCAACCCTGCAGGAACTGTGATAGCATCAGGCTCCCATGACAAGGATATCTTC TTGTGGTATGTCCATGGTGACTGTAAGAACTACATGGTACTGAGAGGGCACAAGAATGCTGTTCTTGACCTTCAATGGACTACTGATGGGACTCAGATCATCTCTGCAAGCCCTGACAAGACTGTGAGAGTGTGGGACGTTGAGACTGGCAAGCAAGTCAAGAAGATGGCCGAGCACTCATCTTTTGTCAACTCATGTTGCCCGGCTCGAAAGTGGCCACCTCTGGTTGTAAGTGGATCGGATGATGGAACAGCAAAGCTGTGGGATTTGCGTCAAAGAGGTGCTATACAAACACTTCCCGACAAGTACCAGATTACAGCCGTCAGCTTCTCAGAGGCGGCAGATAAGGTTTTCACTGGTGGCCTAGACAATG ATGTC AAATGGTGGGATCTCCGTAAGAATGAAGTGACAGAGTATCTCAAAGGACACCAGGACATGATAACCGGAATGCAGCTTAGTCCAGATGGGTCTTATCTCCTAACCAATGCAATGGACAATGAGCTCAAAATCTGGGACTTGC GCCCTTACGCCCCAGAGAACCGGAACATCAAGACCCTCACAGGACACCAGCATAACTTTGAGAAGAACCTGTTGAAGTGCAGC TGGTCCCCTGATAATCGCAAGGTCAC TGCCGGGAGTGCTGATCGCATGGTCTACATC TGGGACACAACATCAAGGCGGATCTTGTACAAGCTTCCTGGCCACAACGGTTCTGTCAACGAGACCGCATTCCATCCCACCGAGCCTGTCATTGGATCTTGCGGCAGTGACAAGCAGATTTATCTTGGGGAGCTTTAAGGGTACTACCATCACATTTTCATCTAGAAGCTATTGTACTATCTTGTTATGAAGGCAAACAGAAACTACCATCCTTGCAATGTTTCTTCATCTGAAAAATTCTAATGCACGA ]
[+] EMBL AK111971 [ CCGCCTCCCTCGTCTCGTCTCGTTCCTCCCTCTCCGGCGGCCGGATCGGCGAACCCCCTCCCGCCGCCGCACGCGCGCGCGCTCCCCGGCTTCGCCGCCGAGCAGAGGGGTAGCGGAGGCTAGGGCTCCCTTCCGGGAACTTAACTTCCAACTTCAAGATGTTCCCCCCAGGCAACAATTCTTTGGCTCTTTCAGCCCCAAGGCCAGGAATGGAGCTGGCTAACATTCAACAGCATCCTAATCAAGCTCTTGGGCCTGGTGGGAAGCAACGTACATCCAGTCTGGAGGCCCCAATAATGCTACTCACAGGCCATCAGAGCGCTGTGTACTGTATGAAGTTCAACCCTGCAGGAACTGTGATAGCATCAGGCTCCCATGACAAGGATATCTTC TTGTGGTATGTCCATGGTGACTGTAAGAACTACATGGTACTGAGAGGGCACAAGAATGCTGTTCTTGACCTTCAATGGACTACTGATGGGACTCAGATCATCTCTGCAAGCCCTGACAAGACTGTGAGAGTGTGGGACGTTGAGACTGGCAAGCAAGTCAAGAAGATGGCCGAGCACTCATCTTTTGTCAACTCATGTTGCCCGGCTCGAAAGTGGCCACCTCTGGTTGTAAGTGGATCGGATGATGGAACAGCAAAGCTGTGGGATTTGCGTCAAAGAGGTGCTATACAAACACTTCCCGACAAGTACCAGATTACAGCCGTCAGCTTCTCAGAGGCGGCAGATAAGGTTTTCACTGGTGGCCTAGACAATG ATGTC AAATGGTGGGATCTCCGTAAGAATGAAGTGACAGAGTATCTCAAAGGACACCAGGACATGATAACCGGAATGCAGCTTAGTCCAGATGGGTCTTATCTCCTAACCAATGCAATGGACAATGAGCTCAAAATCTGGGACTTGC GCCCTTACGCCCCAGAGAACCGGAACATCAAGACCCTCACAGGACACCAGCATAACTTTGAGAAGAACCTGTTGAAGTGCAGC TGGTCCCCTGATAATCGCAAGGTCAC TGCCGGGAGTGCTGATCGCATGGTCTACATC TGGGACACAACATCAAGGCGGATCTTGTACAAGCTTCCTGGCCACAACGGTTCTGTCAACGAGACCGCATTCCATCCCACCGAGCCTGTCATTGGATCTTGCGGCAGTGACAAGCAGATTTATCTTGGGGAGCTTTAAGGGTACTACCATCACATTTTCATCTAGAAGCTATTGTACTATCTTGTTATGAAGGCAAACAGAAACTACCATCCTTGCAATGTTTCTTCATCTGAAAAATTCTAATGCACGATTGACTGACCAGAATCTCCTTTGTAGATTGTATTGAGGCCAGTGGGTCTTTTCAAACTTCTCCATGTTCTGTGCCTTCATCATTCATGTTAT CCTACCTGTGA ]
[+] EMBL C91854 [ CCTCGTCTCGTCTCGTTCCTCCCTCTCCGGCGGCCGGATCGGCGAACCCCCTCCCGCCGCCGCACGCGCGCGCGCTCCCCGGCTTCGCCGCCGAGCAGAGGGGTAGCGGAGGCTAGGGCTCCCTTCCGGGAACTTAACTTCCAACTTCAAGATGTTCCCCCCAGGCAACAATTCTTTGGCTCTTTCAGCCCCAAGGCCAGGAATGGAGCTGGCTAACATTCAACAGCATCCTAATCAAGCTCTTGGGCCTGGTGGGAAGCAACGTACATCCAGTCTGGAGGCCCCAATAATGCTACTCACAGGCCATCAGAGCGCTGTGTACTGTATGAAGTTCAACCCTGCAGGNACTGTGATAGCATCAGGNT CCATGACAAGGATATCTTCTTTGTGGTATGTCCATGGTGACTGTAng ]
[+] EMBL CB667122 [ TCTCGTCCCTCCCTCTCCGGCGGCCGGATCGGCGAACCCCCTCCCGCCGCCGCACGCGCGCGCGCTCCCCGGCTTCGCCGCCGAGCAGAGGGGTAGCGGAGGCTAGGGCTCCCTTCCGGGAACTTAACTTCCAACTTCAAGATGTTCCCCCCAGGCAACAATTCTTTGGCTCTTTCAGCCCCAAGGCCAGGAATGGAGCTGGCTAACATTCAACAGCATCCTAATCAAGCTCTTGGGCCTGGTGGGAAGCAACGTACATCCAGTCTGGAGGCCCCAATAATGCTACTCACAGGCCATCAGAGCGCTGTGTACTGTATGAAGTTCAACCCTGCAGGAACTGTGATAGCATCAGGCTCCCATGACAAGGATATCTTC TTGTGGTATGTCCATGGTGACTGTAAGAACTACATGGTACTGAGAGGGCACAAGAATGCTGTTCTTGACCTTCAATGGACTACTGATGGGACTCAGATCATCTCTGCAAGCCCTGACAAGACTGTGAGAGTGTGGGACGTTGAGACTGGCAAGCAAGTCAAGAAGATGGCCGAGCACTCATCTTTTGTCAACTCATGTTGCCCGGCTCGAAAGTGGCCACCTCTGGTTGTAAGTGGATCGGATGATGGAACAGCAAAGCTGTGGGATTTGCGTCAAAGAGGTGCTATACAAACACTTCCCGACAAGTACCAGATTATAGCCGTCAGCTTCTCAGAGGCGGCAGATAAGGTTTTCACTGGTGGCCTAGACAATG ATGTC AAATGGTGGGATCTCCGTAAGAATGAAGTGACAGAGTATCTCAAAGGACACC ]
[+] EMBL CA753707 [ TCCCTCTCCGGCGGCCGGATCGGCGAACCCCCTCCCGCCGCCGCACGCGCGCGCGCTCCCCGGCTTCGCCGCCGAGCAGAGGGGTAGCGGAGGCTAGGGCTCCCTTCCGGGAACTTAACTTCCAACTTCAAGATGTTCCCCCCAGGCAACAATTCTTTGGCTCTTTCAGCCCCAAGGCCAGGAATGGAGCTGGCTAACATTCAACAGCATCCTAATCAAGCTCTTGGGCCTGGTGGGAAGCAACGTACATCCAGTCTGGAGGCCCCAATAATGCTACTCACAGGCCATCAGAGCGCTGTGTACTGTATGAAGTTCAACCCTGCAGGAACTGTGATAGCATCAGGCTCCCATGACAAGGATATCTTC TTGTGGTATGTCCATGGTGACTGTAAGAACTACATGGTACTGAGAGGGCACAAGAATGCTGTTCTTGACCTTCAATGGACTACTGATGGGACTCAGATCATCTCTGCAAGCCCTGACCAGACTGTGAGAGTGTGGGACGTNGAGACTGGCAAGCAAGTCAAGAAGATGGCCGAGCACTCATCTTTTGTCAACTCATGTTGCCCGGCTCGAAAGTGGCCACCTCTGGTTGTGAGTGGATCGGATGATGGAACAGCAAAGCTGTGGGATTTGCGTCAAAGAGGTGCTATACAAACACTTCCCGACAAGTACCAGATTACAGCCGTCAGCTTCTCAGAGGCGGCAGATAAGGTTTTCACTGGTGGCCTAGACAATG ATGTC AAATGGTGGGATCTCCGTAAGAATGAAGTGACAGAGTATCTCAAAGGA ]
[+] EMBL CB673889 [ CGGCGGCCGGATCGGCGAAACCCCTCCCGCCGCCGCAGGCGCGCGCGCTCCCCGGCTTCCCCGCCGAGCAGAGGGGTAGCGGAGGCTAGGGCTCCCTTCCGGGAACTTAACTTCCAACTTCCAGATGTTCCCCCCAGGCAACAATTCTTTGGCTCTTTCAGCCCCAAGGGCAGGAATGGAGCTGGCTAACATTCAACAGCATCCTAGTCAAGCTCTTGGGCCTGGTGGGAAGCAACGTACATCCAGTCTGGAGGCCCCAATAATGCTACTCACAGGCCATCAGAGCGCTGTGTACTGTATGAAGCTCAACCCTGCAGGAACTGTGATAGCATCAGGCTCCCATGACAAGGATATCTTC TTGAGGTATGTCCATGGTGACTGTAAGAGCTACATGGTACTGAGAGGGCACAAGAATGCTGTTCTTGACCTTCAGTGGACTACTGATGGGACTCAGATCATCTCTGCAAGCCCTGACAAGACTGTGAGAGTGTGGGACGCTGAGACTGGCAAGCAAGTCAAGAAGATGGCCGAGCACTCATCTTTTGTCAACTCATGTTGCCCGGCTCGAAAGTGGCCACCTCTGGCTGTAAGTGGATCGGATGATGGAACAGCAAAGCTGTGGGATTTGCGTCAAAGAGGTGCTAT ]
[-] EMBL CB667123 [ TGATGGAACAGCAAAGCTGTGGGATTTGCGTCAAAGAGGTGCTATACAAACACTTCCCGACAAGTACCAGATTATAGCCGTCAGCTTCTCAGAGGCGGCAGATAAGGTTTTCACTGGTGGCCTAGACAATG ATGTC AAATGGTGGGATCTCCGTAAGAATGAAGTGACAGAGTATCTCAAAGGACCCCAGGACATGATAACCGGAATGCAGCTTAGTCCAGATGGGTCTTATCTCCTAACCAATGCAATGGACAATGAGCTCAAAATTTGGGACTTGC GCCCTTACGCCCCAGAGAACCGGAACATCAAGACCCTCCCAGGACACCAGCATAACTTTGAGAAGAACCTGTTGAAGTGCAGC TGGTCCCCTGATAATCGCAAGGTCAC TGCCGGGAGTGCTGATCGCATGGTTTACATT TGGGACACAACATCAAGGCGGATTTTGTACAAGCTTCCTGGCCACAACGGTTTTGTCAACGAGACCGCATTCCATCCCACCGAGCCTGTCATTGGATCTTGCGGCAGTGACAAGCAGATTTATTTTGGGGAGCTTTAAGGGTACTACCATCACATTTTCATTTAGAAGCTATTGTACTATCTTGTTATGAAGGCAAACAGAAACTACCATCCTTGCAATGTTTTTTCATCTGAAAAATTTTAATGCCCGATTGACTGACCAGAATCTCCTTTGTAGATTGTATTGAGGCCAGTGGGTCTTTTCAAACTTCTCCATGTTCTGTGCCTTCATCATTCATGTTATGGCTACCTGTGACTATTCTGCCGAAAAAAAAAAAAAAAAAAAGG]
[+] EMBL C27891 [ ACCAGATTACAGCCGTCAGCTTCTCAGAGGCGGCAGATAAGGTTTTCACTGGTGGCCTAGACAATG ATGTC AAATGGTGGGATCTCCGTAAGAATGAAGTGACAGAGTATCTCAAAGGACACCAGGACATGATAACCGGAATGCAGCTTAGTCCAGATGGGTCTTATCTCCTAACCAATGCAATGGACAATGAGCTCAAAATCTGGGACTTGC GCCCTTACGCCCCAGAGAACCGGAACATCAAGACCCTCACAGGACACCAGCATAACTTTGAGAAGAACCTGTTGAAGTGCAGCTTGGTCCCCTGATAATCGCAAGGTCACTTNCCGGGAGTGCTGATCGCATGGTCTACATCTTGGGACACAACATCAAGGCGGATCTTGTTCAAGCTTCCTGGGCACAACGGTTCTTTTAACGAGA ]
[-] EMBL CB673890 [ CCAGATTACAGCCGTCAGCTTCTCAGAGGCGGCAGATAAGGTTTTCACTGGTGGCCTAGACAATGAATGTC AAATGGTGGGATCTCCGTAAGAATGAAGTGACAGAGTATCTCAAAGGACACCAGGACATGATAACCGGAATGCAGCTTAGTCCAGATGGGTCTTATCTCCTAACCAATGCAATGGACAATGAGCTCAAAATCTGGGACTTGC GCCCTTACGCCCCAGAGAACCGGAACATCAAGACCCTCACAGGACACCAGCATAACTTTGAGAAGAACCTGTTGAAGTGCAGC TGGTCCCCTGATAATCGCAAGGTCAC TGCCGGGAGTGCTGATCGCATGGTCTACATC TGGGACACAACATCAAGGCGGATCTTGTACAAGCTTCCTGGCCACAACGGTTCTGTCAACGAGACCGCATTCCATCCCACCGAGCCTGTCATTGGATCTTGCGGCAGTGACAAGCAGATTTATCTTGGGGAGCTTTAAGGGTAGTACCATCACATTTTCATCTAGAAGCTATTGTACTATCTTGTTATGAAGGCAGGCAGAAACTACCATCCTTGCAATGTTTCTTCATCTGAAAAATTCTA ]
[+] EMBL AU100896 [ ATGTCAAAATGGTGGGATCTCNGTAAGAATGAAGTGNCAGAGTATCTCAAAGGACACCAGGACATGATACCCGGAATGCAGTTTAGTCCAGATGGGTCTTATCTCCTAACCAATGCAATGG CAATGAGCTCAAAATCTGGGACTTGCGGCCCTTACGCCCCAGAGAACCGGAACATCAAGACCCTCACAGGACACCAGCATAACTTTGAGAAGAACCTGTTGAAGTGCAGC TGGTCCCCTGATAATCGCAAGGTCAC TGCCGGGAGTGCTGATCGCATGGTCTACATC TGGGACACAACATCAAGGCGGATCTTGTACAAGCTTCCTGGCCACAACGGTTCTGTCAACGAGACCGCATTCCATCCCACCGAGCCTGTCATTGGATCTTGCGGCAGTGACAAGCAGATTTATCTTGGGGAGCTTTAAGGGTACTACCATCACATTTTCATCTAGAAGCTATTGTACTATCTTGTTATGAAGGCAAACAGAAACTACCATCCTTGCAATGTTTCTTCATCTGAAAAATTCTAATGCACGATTGACTGACCAGAATCTCCTTTGTAGATTGTATTGAGGCCAGTGGGTCTTTTCAAAaa ]
consensusID : consensus_14437#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 801 fasta sequence
[CGTCTCGTCTCGTTCCTCCCTCTCCGGCGGCCGGATCGGCGAACCCCCTCCCGCCGCCGCACGCGCGCGCGCTCCCCGGCTTCGCCGCCGAGCAGAGGGGTAGCGGAGGCTANGGCTCCCTTCCGGGAACTTAACTTCCAACTTCAAGATGTTCCCCCCAGGCAACAATTCTTTGGCTCTNTCAGCCCCAAGGCCAGGAATGGAGCTGGCTAACATTCAACAGCATCCTAATCAAGCTCTTGGGCCTGGTGGGAAGCAACGTACATCCAGTCTGGAGGCCCCAATAATGCTACTCACAGGCCATCAGAGCGCTGTGTACTGTATGAAGTTCAACCCTGCAGGAACTGTGATAGCATCAGGCTCCCATGACAAGGATATCTTCTTGTGGATGTCCATGGTGACTGTAAGAACTACATGGTACTGAGAGGGCACANGAAATGCTGTCTTGACCTTCAATGGACTACTGATGGGACTAGATCATCTCTGCAAGCCCTGACAGACTGTGACAAGGGTGGAGTGAGACTGCAAGCAAGTCAGAGATGCCGACACTCATCTTTGCAACTATGTGCCCGCTTCGAAGGGCCCTCTGGTTGAAGGACGATATGAACACCACTGGGAATGCGCCAAAGTGCTTCAACCTTCCACAGTACCAATCAGCGTACTTTCAAGCGCAATAGTTACTGTGCCTACAGATCATGGGATCCGAGAAAATCCATTTTAAGACCGGATGATACGATGATTTTCATGGTTATTTCATCGGTCNAGTAATAGGATGAATTCTATAGTAATACTCGGCGCATG]
[+] EMBL AW154967 [CGTCTCGTCTCGTTCCTCCCTCTCCGGCGGCCGGATCGGCGAACCCCCTCCCGCCGCCGCACGCGCGCGCGCTCCCCGGCTTCGCCGCCGAGCAGAGGGGTAGCGGAGGCTANGGCTCCCTTCCGGGAACTTAACTTCCAACTTCAAGATGTTCCCCCCAGGCAACAATTCTTTGGCTCTNTCAGCCCCAAGGCCAGGAATGGAGCTGGCTAACATTCAACAGCATCCTAATCAAGCTCTTGGGCCTGGTGGGAAGCAACGTACATCCAGTCTGGAGGCCCCAATAATGCTACTCACAGGCCATCAGAGCGCTGTGTACTGTATGAAGTTCAACCCTGCAGGAACTGTGATAGCATCAGGCTCCCATGACAAGGATATCTTCTTGTGGATGTCCATGGTGACTGTAAGAACTACATGGTACTGAGAGGGCACANGAAATGCTGTCTTGACCTTCAATGGACTACTGATGGGACTAGATCATCTCTGCAAGCCCTGACAGACTGTGACAAGGGTGGAGTGAGACTGCAAGCAAGTCAGAGATGCCGACACTCATCTTTGCAACTATGTGCCCGCTTCGAAGGGCCCTCTGGTTGAAGGACGATATGAACACCACTGGGAATGCGCCAAAGTGCTTCAACCTTCCACAGTACCAATCAGCGTACTTTCAAGCGCAATAGTTACTGTGCCTACAGATCATGGGATCCGAGAAAATCCATTTTAAGACCGGATGATACGATGATTTTCATGGTTATTTCATCGGTCNAGTAATAGGATGAATTCTATAGTAATACTCGGCGCATG]
consensusID : consensus_14437#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 604 fasta sequence
[TCGTGCCGAATTCGGCACGAGCACAGGACACCAGCATAACTTTGAGAAGAACCTGTTGAAGTGCAGCTGGTCCCCTGATAATCGCAAGGTCACTGCCGGGAGTGCTGATCGCATGGTCTACATCTGGGACACAACATCAAGGCGGATCTTGTACAAGCTTCCTGGCCACAACGGTTCTGTCAACGAGACCGCATTCCAT-CCCACCGAGCCTGTCATTGGATCTTGCGGCAGTGACA-AGCAGATTTATCTTGGGGAGCTTTAAGGGTACTACCATCACATTTTCATCTAGAAGCTATTGTACTATCTTGTTATGAAGGCAAACAGAAACTACCATCCTTGCAATGTTTCTTCATCTGAAAAATTCTAATGCACGATTGACTGACCAGAATCTCCTTTGTAGATTGTATTGAGGCCAGTGGGTCTTTTCAAACTTCTCCA-TGTTCTGTGCCTTCATCATTCATGTTATCCTACCTGTGACTATTCTGCCATTCCCTGTCAATCACTGATTGCATGTTTACCTCTCTGAAACCTGCTTGCAATCTGCTGATTTGAGGCAGTGTTTAACAAACATTTTTTTGTTACTGGTGGCGCGGGAGCTTTGCTA]
[+] EMBL BE230146 [TCGTGCCGAATTCGGCACGAGCACAGGACACCAGCATAACTTTGAGAAGAACCTGTTGAAGTGCAGCTGGTCCCCTGATAATCGCAAGGTCACTGCCGGGAGTGCTGATCGCATGGTCTACATCTGGGACACAACATCAAGGCGGATCTTGTACAAGCTTCCTGGCCACAACGGTTCTGTCAACGAGACCGCATTCCAT CCCACCGAGCCTGTCATTGGATCTTGCGGCAGTGACA AGCAGATTTATCTTGGGGAGCTTTAAGGGTACTACCATCACATTTTCATCTAGAAGCTATTGTACTATCTTGTTATGAAGGCAAACAGAAACTACCATCCTTGCAATGTTTCTTCATCTGAAAAATTCTAATGCACGATTGACTGACCAGAATCTCCTTTGTAGATTGTATTGAGGCCAGTGGGTCTTTTCAAACTTCTCCA TGTTCTGTGCCTTCATCATTCATGTTATCCTACCTGTGACTATTCTGCCATTCCCTGTCAATCACTGATTGCATGGTTACCTCTCTGAAACCTGCTTGCAATCTGCTGATTTGAGGCAGTGTTTAACAAACATTTTTTTGTTACTGGTGGCGCGGGAGCTTTGCTA]
[+] EMBL BE229878 [ CGTGCCGAATTCGGCACGAGCACAGGACACCAGCATAACTTTGAGAAGAACCTGTTGAAGAGCAGCTGGTCCCCTGATAATCGCAAGGTCACTGCCGGGAGTGCTGATCGCATGGTCTACATCTGGGACACAACATCAAGGCGGATCTTGTACAAGCTTCCTGGCCACAACGGTTCTGTCAACGAGACCGCATTCCAT CCCACCGAGCCTGTCATTGGATCTTGCGGCAGTGACA AGCAGATTTATCTTGGGGAGCTTTAAGGGTACTACCATCACATTTTCATCTAGAAGCTATTGTACTATCTTGTTATGAAGGCAAACAGAAACTACCATCCTTGCAATGTTTCTTCATCTGAAAAATTCTAATGCACGATTGACTGACCAGAATCTCCTTTGTAGATTGTATTGAGGCCAGTGGGTCTTTTCAAACTTCTCCA TGTTCTGTGCCTTCATCATTCATGTTATCCTACCTGTGACTATTCTGCCATTCCCTG CAATCACTGATTGCATGTTTACCTCTCTGAAACCTGCTTGCAA ]
[+] EMBL BE230424 [ CGTGCCGAATTCGGCACGAGCACAGGACACCAGCATAACTTTGAGAAGAACCTGTTGAAGTGCAGCTGGTCCCCTGATAATCGCAAGGTCACTGCCGGGAGTGCTGATCGCATGGTCTACATCTGGGACACAACATCAAGGCGGATCTTGTACTAGCTTCGTGGCCACA ]
[+] EMBL BI811075 [ CGGATCTTGTACAAGCTTTCTGGCCACAGCGGTTCTGTCAACGAGACC CATTCCATGCCCACCGAGCCTGTCATTGGATCTTGCGGCAGTGACACAGCAGATTTATCTTGGGGAGCTTTAAGGGTACTACCATCACAGTTTCATCTAGAAGCTATTGTACTATCTTGTTATGAAGGCCAACAGAAACTACCATCCTTGCCATGTTTCTTCATCTGAAAAATTCTAATGCACGATTGACTGACCAGAATCTCCTTTGTAGATTGTATTGAGGCCCGTGGGTCTTTTCAAACTTCTCCACTGTTCTGTGCCTTCATCATTCATGTTATCCTACCTGTGACTATTCTGCCCTTCCCTGTCCATCACTGATTGCATGTTTACCTCTCTGAAAaaaaaaa ]
consensusID : consensus_14437#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 383 fasta sequence
[GCAGCTGGACCCCTGATAATCGNAAGGTCACTNCCGGGAGTGCTGATCGCNTGGTCTACATCTGGGACACAACATCAAGGCGGATCTTGTACAAGCTTCCTGGCCACAACGGTTCTNTCAACGAGACCGCATTCCATCCCACCGAGCCTGTCATTGGATCTTGCGGCAGTGACAAGCAGATTTATCTTGGGGAGCTTTAAGGGTACTACCATCACATTTTCATCTAGAAGCTATTGTNCTATCTTGTTATGAAGGCAAACAGAAACTACCATCCTTGCAATGTTTCTTCATCTGNAAAATTCTAATGCACGATTGACTGACCAGAATCTCCTTTGTAGATTGTATTGAGGCCAGTGGGTCTTTTCAAAAAAAAAAAAAAAAAA]
[+] EMBL AU166143 [GCAGCTGGACCCCTGATAATCGNAAGGTCACTNCCGGGAGTGCTGATCGCNTGGTCTACATCTGGGACACAACATCAAGGCGGATCTTGTACAAGCTTCCTGGCCACAACGGTTCTNTCAACGAGACCGCATTCCATCCCACCGAGCCTGTCATTGGATCTTGCGGCAGTGACAAGCAGATTTATCTTGGGGAGCTTTAAGGGTACTACCATCACATTTTCATCTAGAAGCTATTGTNCTATCTTGTTATGAAGGCAAACAGAAACTACCATCCTTGCAATGTTTCTTCATCTGNAAAATTCTAATGCACGATTGACTGACCAGAATCTCCTTTGTAGATTGTATTGAGGCCAGTGGGTCTTTTCAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14437#2 ------------------------------------------------------------
consensus_14437#3 ------------------------------------------------------------
consensus_14437#0 CTGCGCCGCCTCCCTCGTCTCGTCTCGTTCCTCCCTCTCCGGCGGCCGGATCGGCGAACC 60
consensus_14437#1 ------------------------------------------------------------
consensus_14437#2 ------------------------------------------------------------
consensus_14437#3 ------------------------------------------------------------
consensus_14437#0 CCCTCCCGCCGCCGCACGCGCGCGCGCTCCCCGGCTTCGCCGCCGAGCAGAGGGGTAGCG 120
consensus_14437#1 ------------------------------------------------------------
consensus_14437#2 ------------------------------------------------------------
consensus_14437#3 ------------------------------------------------------------
consensus_14437#0 GAGGCTAGGGCTCCCTTCCGGGAACTTAACTTCCAACTTCAAGATGTTCCCCCCAGGCAA 180
consensus_14437#1 ------------------------------------------------------------
consensus_14437#2 ------------------------------------------------------------
consensus_14437#3 ------------------------------------------------------------
consensus_14437#0 CAATTCTTTGGCTCTTTCAGCCCCAAGGCCAGGAATGGAGCTGGCTAACATTCAACAGCA 240
consensus_14437#1 ------------------------------------------------------------
consensus_14437#2 ------------------------------------------------------------
consensus_14437#3 ------------------------------------------------------------
consensus_14437#0 TCCTAATCAAGCTCTTGGGCCTGGTGGGAAGCAACGTACATCCAGTCTGGAGGCCCCAAT 300
consensus_14437#1 ------------------------------------------------------------
consensus_14437#2 ------------------------------------------------------------
consensus_14437#3 ------------------------------------------------------------
consensus_14437#0 AATGCTACTCACAGGCCATCAGAGCGCTGTGTACTGTATGAAGTTCAACCCTGCAGGAAC 360
consensus_14437#1 ------------------------------------------------------------
consensus_14437#2 ------------------------------------------------------------
consensus_14437#3 ------------------------------------------------------------
consensus_14437#0 TGTGATAGCATCAGGCTCCCATGACAAGGATATCTTCTTGTGGTATGTCCATGGTGACTG 420
consensus_14437#1 ------------------------------------------------------------
consensus_14437#2 ------------------------------------------------------------
consensus_14437#3 ------------------------------------------------------------
consensus_14437#0 TAAGAACTACATGGTACTGAGAGGGCACAAGAATGCTGTTCTTGACCTTCAATGGACTAC 480
consensus_14437#1 ------------------------------------------------------------
consensus_14437#2 ------------------------------------------------------------
consensus_14437#3 ------------------------------------------------------------
consensus_14437#0 TGATGGGACTCAGATCATCTCTGCAAGCCCTGACAAGACTGTGAGAGTGTGGGACGTTGA 540
consensus_14437#1 ------------------------------------------------------------
consensus_14437#2 ------------------------------------------------------------
consensus_14437#3 ------------------------------------------------------------
consensus_14437#0 GACTGGCAAGCAAGTCAAGAAGATGGCCGAGCACTCATCTTTTGTCAACTCATGTTGCCC 600
consensus_14437#1 ------------------------------------------------------------
consensus_14437#2 ------------------------------------------------------------
consensus_14437#3 ------------------------------------------------------------
consensus_14437#0 GGCTCGAAAGTGGCCACCTCTGGTTGTAAGTGGATCGGATGATGGAACAGCAAAGCTGTG 660
consensus_14437#1 ------------------------------------------------------------
consensus_14437#2 ------------------------------------------------------------
consensus_14437#3 ------------------------------------------------------------
consensus_14437#0 GGATTTGCGTCAAAGAGGTGCTATACAAACACTTCCCGACAAGTACCAGATTACAGCCGT 720
consensus_14437#1 ------------------------------------------------------------
consensus_14437#2 ------------------------------------------------------------
consensus_14437#3 ------------------------------------------------------------
consensus_14437#0 CAGCTTCTCAGAGGCGGCAGATAAGGTTTTCACTGGTGGCCTAGACAATGATGTCAAATG 780
consensus_14437#1 ------------------------------------------------------------
consensus_14437#2 ------------------------------------------------------------
consensus_14437#3 ------------------------------------------------------------
consensus_14437#0 GTGGGATCTCCGTAAGAATGAAGTGACAGAGTATCTCAAAGGACACCAGGACATGATAAC 840
consensus_14437#1 -----------------------------------------------------CGTCTCG 7
consensus_14437#2 ------------------------------------------------------------
consensus_14437#3 ------------------------------------------------------------
consensus_14437#0 CGGAATGCAGCTTAGTCCAGATGGGTCTTATCTCCTAACCAATGCAATGGACAATGAGCT 900
consensus_14437#1 TCTCGTTCCTCCCTCTCCGGCGGCCGGATCGGCGAACCCCCTCCCGCCGCCGCACGCGCG 67
consensus_14437#2 ---------------------------------TCGTGCCGAATTCGGCACGAGCACAGG 27
consensus_14437#3 ------------------------------------------------------------
consensus_14437#0 CAAAATCTGGGACTTGCGCCCTTACGCCCCAGAGAACCGGAACATCAAGACCCTCACAGG 960
consensus_14437#1 CGCGCTCCCCGGCTTCGCCGCCGAGCAGAGGGGTAGCGGAGGCTANGGCTCCCTTCCGGG 127
consensus_14437#2 ACACCAGCAT--AACTTTGAGAAGAACCTGTTGAAGTGCAGCTGGTC--CCCTGATAATC 83
consensus_14437#3 -------------------------------------GCAGCTGGAC--CCCTGATAATC 21
consensus_14437#0 ACACCAGCAT--AACTTTGAGAAGAACCTGTTGAAGTGCAGCTGGTC--CCCTGATAATC 1016
consensus_14437#1 AACTTAACTTCCAACTTCAAGATGTTCCCCCCAGGCAACAATTCTTTGGCTCTNTCAGCC 187
** * * ** * *
consensus_14437#2 GCAAGGTCACTGCCGGGAGTG--------CTGATCGCAT---GGTCTACATCTGGGACAC 132
consensus_14437#3 GNAAGGTCACTNCCGGGAGTG--------CTGATCGCNT---GGTCTACATCTGGGACAC 70
consensus_14437#0 GCAAGGTCACTGCCGGGAGTG--------CTGATCGCAT---GGTCTACATCTGGGACAC 1065
consensus_14437#1 CCAAGGCCAGGAATGGAGCTGGCTAACATTCAACAGCATCCTAATCAAGCTCTTGGGCCT 247
**** ** ** ** * ** * ** * *** ** *
consensus_14437#2 AAC----ATCAAGGCGGATCTTGT------------ACAA----GCTTCCTGGCCACAAC 172
consensus_14437#3 AAC----ATCAAGGCGGATCTTGT------------ACAA----GCTTCCTGGCCACAAC 110
consensus_14437#0 AAC----ATCAAGGCGGATCTTGT------------ACAA----GCTTCCTGGCCACAAC 1105
consensus_14437#1 GGTGGGAAGCAACGTACATCCAGTCTGGAGGCCCCAATAATGCTACTCACAGGCCATCAG 307
* *** * *** ** * ** ** * ***** *
consensus_14437#2 GGTTCTGTCAACGAGACCGCATTCCATCCCACCGAGCCTGTCATTGGATCTTGCGGCAGT 232
consensus_14437#3 GGTTCTNTCAACGAGACCGCATTCCATCCCACCGAGCCTGTCATTGGATCTTGCGGCAGT 170
consensus_14437#0 GGTTCTGTCAACGAGACCGCATTCCATCCCACCGAGCCTGTCATTGGATCTTGCGGCAGT 1165
consensus_14437#1 AGCGCTGTGTACTGTATGAAGTTCAACCCTGCAGGAACTGTGATAGCATCAGGCTCCCAT 367
* ** * ** * *** * ** * * **** ** * *** ** * *
consensus_14437#2 GACAAGCAGATTTATCTTGGGGAGCTTTAAGGGTACTACCATCACATTTT--CATCTAGA 290
consensus_14437#3 GACAAGCAGATTTATCTTGGGGAGCTTTAAGGGTACTACCATCACATTTT--CATCTAGA 228
consensus_14437#0 GACAAGCAGATTTATCTTGGGGAGCTTTAAGGGTACTACCATCACATTTT--CATCTAGA 1223
consensus_14437#1 GACAAGGATATCT-TCTTGTGGATGTCCATGGTGACTGTAAGAACTACATGGTACTGAGA 426
****** * ** * ***** *** * * ** *** * ** * * ***
consensus_14437#2 AGCTATTG----TACTATCTTG--TTATGAAGGCAAACAGA---AACTA--CCATCCTTG 339
consensus_14437#3 AGCTATTG----TNCTATCTTG--TTATGAAGGCAAACAGA---AACTA--CCATCCTTG 277
consensus_14437#0 AGCTATTG----TACTATCTTG--TTATGAAGGCAAACAGA---AACTA--CCATCCTTG 1272
consensus_14437#1 GGGCACANGAAATGCTGTCTTGACCTTCAATGGACTACTGATGGGACTAGATCATCTCTG 486
* * * ** ***** * * ** ** ** **** **** **
consensus_14437#2 CAATGTTTCTTCATCTGAAA-AATTCTAATGCACGATTG---ACTGACCAGAA------- 388
consensus_14437#3 CAATGTTTCTTCATCTGNAA-AATTCTAATGCACGATTG---ACTGACCAGAA------- 326
consensus_14437#0 CAATGTTTCTTCATCTGAAA-AATTCTAATGCACGATTG---ACTGACCAGAA------- 1321
consensus_14437#1 CAAGCCCTGACAGACTGTGACAAGGGTGGAGTGAGACTGCAAGCAAGTCAGAGATGCCGA 546
*** * *** * ** * * ** ** * ****
consensus_14437#2 ---TCTCCTTTGTAGAT-TGTATTGAGGCCAGTGGGTCTTTT---CAAACTTCTCCATGT 441
consensus_14437#3 ---TCTCCTTTGTAGAT-TGTATTGAGGCCAGTGGGTCTTTT---CAAAAAAAAAAAAAA 379
consensus_14437#0 ---TCTCCTTTGTAGAT-TGTATTGAGGCCAGTGGGTCTTTT---CAAACTTCTCCATGT 1374
consensus_14437#1 CACTCATCTTTGCAACTATGTGCCCGCTTCGAAGGGCCCTCTGGTTGAAGGACGATATGA 606
** ***** * * *** * *** * * * ** *
consensus_14437#2 TCTGTGCCTTCATCATTC--ATGTTATCCTACCTGTGACTATTCTG--CCATTCCCTGTC 497
consensus_14437#3 AAAA-------------------------------------------------------- 383
consensus_14437#0 TCTGTGCCTTCATCATTC--ATGTTATCCTACCTGTGACTATTCTG--CCGAAAAAAAAA 1430
consensus_14437#1 ACACCACTGGGAATGCGCCAAAGTGCTTCAACCTTCCACAGTACCAATCAGCGTACTTTC 666
consensus_14437#2 AATCACTGATTGCATGTTTACCTCTCTGAAACCTGCTTGCAATCTGCTGATTTGAGGCAG 557
consensus_14437#3 ------------------------------------------------------------
consensus_14437#0 AAAAAAAAAAGG------------------------------------------------ 1442
consensus_14437#1 AAGCGCAATAGTTACTGTGCCTACAGATCATGGGATCCGAGAAAATCCATTTTAAGACCG 726
consensus_14437#2 TGTTTAACAAACATTTTTTTGTTACTGGTGGCGCGGGAGCTTTGCTA------------- 604
consensus_14437#3 ------------------------------------------------------------
consensus_14437#0 ------------------------------------------------------------
consensus_14437#1 GATGATACGATGATTTTCATGGTTATTTCATCGGTCNAGTAATAGGATGAATTCTATAGT 786
consensus_14437#2 ---------------
consensus_14437#3 ---------------
consensus_14437#0 ---------------
consensus_14437#1 AATACTCGGCGCATG 801
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||