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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14447#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1087 fasta sequence
[GTCTCCTCCTCCTCCTCCTCCGCCTCATCTCCACCACCACCGCGAGCTCGCCAGCGCCACGATTCCCGAGGCCCAGGAGAGCGCGAGCCGCCGCCACCGCAGCAGCAGCCTAGCTCCTAGCTAGCCAGCCATGGCGCTCGCCCACCAGACCGGCAAGTTCGAAGTCGGCGACAAGGTCCTCGCCACCAGTGCTGTATTTGGGGAGGAAATCTGGCCGGCAGCAGGGTACGGACAGACCATGTACTGCATCCGTCAGAGGGTTGGCCCCCTCTACATGAAGATGGAGAAGAGATTTGGGAAATGGGATGGTGCTGCTGAGCTCAGTGAGAAGGAGATCATCAGGGCTGAGAGGAACTCCGGGGTGATCAGCAACAGGGTGAGGGAGATCCAGCTGCAAAATTACCAGAGGAAGATGGAGCAGAAGATGCAGAGAGAGGAGGATCTTCGCATGGGGCTGAGGCTGTACAAGGATGGTAAATATGAGGAGGCATTGGAGAAGTTCGAGTCAGTTTTGGGATCAAAACCTGAGATCAATGAGTCTTCCATAGCTAGCTACAATGTTGCCTGCTGTTACTCGAAGCTTGACCGGATACAAGCTGGTATTTCTGCACTGGAAGATGCCCTGAAAGCAGGTTATGAAGACTTCAAGAGAATTCGCACCGACCCGGATCTAGAAAACTTGAGGAAAACTGAGGAATTCAACGTCCTGCTGAACAAGTACGACGAATCGTTCATCAATGAGAATGCTATCAACGCCATCAAATCCTTGTTTGGATTCAACAAGAAATGAGCACTGAACTGGTCATGGTGGTAGGAGATATTGCATCTTTTCTCCAGCTGCAGTTGAACACTTCTGAAGCTTTGCTAGGCTATATAGCACTTGGCAAACA-CGGTTCAATTTTTC-TCCCTGC-CATTAGTTCACACTTCACACACCAGTAGTTTTAGCTATTCTTGGTGAGATTCTGCAGAACGGTTTCAGTCTTCCCTCTTACTGTAACCAGTCGATGGAGATACACTTTGTAAATTCAAGCAACCAAATGTTAAGGAAATATATTGTGATTGTGCTTATAAATTTATCCCAAATAGG]
[+] EMBL AK066475 [GTCTCCTCCTCCTCCTCCTCCGCCTCATCTCCACCACCACCGCGAGCTCGCCAGCGCCACGATTCCCGAGGCCCAGGAGAGCGCGAGCCGCCGCCACCGCAGCAGCAGCCTAGCTCCTAGCTAGCCAGCCATGGCGCTCGCCCACCAGACCGGCAAGTTCGAAGTCGGCGACAAGGTCCTCGCCACCAGTGCTGTATTTGGGGAGGAAATCTGGCCGGCAGCAGGGTACGGACAGACCATGTACTGCATCCGTCAGAGGGTTGGCCCCCTCTACATGAAGATGGAGAAGAGATTTGGGAAATGGGATGGTGCTGCTGAGCTCAGTGAGAAGGAGATCATCAGGGCTGAGAGGAACTCCGGGGTGATCAGCAACAGGGTGAGGGAGATCCAGCTGCAAAATTACCAGAGGAAGATGGAGCAGAAGATGCAGAGAGAGGAGGATCTTCGCATGGGGCTGAGGCTGTACAAGGATGGTAAATATGAGGAGGCATTGGAGAAGTTCGAGTCAGTTTTGGGATCAAAACCTGAGATCAATGAGTCTTCCATAGCTAGCTACAATGTTGCCTGCTGTTACTCGAAGCTTGACCGGATACAAGCTGGTATTTCTGCACTGGAAGATGCCCTGAAAGCAGGTTATGAAGACTTCAAGAGAATTCGCACCGACCCGGATCTAGAAAACTTGAGGAAAACTGAGGAATTCAACGTCCTGCTGAACAAGTACGACGAATCGTTCATCAATGAGAATGCTATCAACGCCATCAAATCCTTGTTTGGATTCAACAAGAAATGAGCACTGAACTGGTCATGGTGGTAGGAGATATTGCATCTTTTCTCCAGCTGCAGTTGAACACTTCTGAAGCTTTGCTAGGCTATATAGCACTTGGCAAACA CGGTTCAATTTTTC TCCCTGC CATTAGTTCACACTTCACACACCAGTAGTTTTAGCTATTCTTGGTGAGATTCTGCAGAACGGTTTCAGTCTTCCCTCTTACTGTAACCAGTCGATGGAGATACACTTTGTAAATTCAAGCAACCAAATGTTAAGGAAATATATTGTGATTGTGCTTATAAATTTATCCCAAATAG ]
[-] EMBL CB682981 [ GATTT GGAAATGGGATGGTGCTGCTGAGCTCAGTGAGAAGGAGATCATCAGGGCTGAGAGGAACTCCGGGGTGATCAGCAACAGGGTGAGGGAGATCCAGCTGCAAAATTACCAGAGGAAGATGGAGCAGAAGATGCAGAGAGAGGAGGATCTTCGCATGGGGCTGAGGCTGTACAAGGATGGTAAATATGAGGAGGCATTGGAGAAGTTCGAGTCAGTTTTGGGATCAAAACCTGAGATCAATGAGTCTTCCATAGCTAGCTACAATGTTGCCTGCTGTTACTCGAAGCTTGACCGGATACAAGCTGGTATTTCTGCACTGGAAGATGCCCTGAAAGCAGGTTATGAAGACTTCAAGAGAATTCGCACCGACCCGGATTTAGAAAACTTGAGGAAAACTGAGGAATTCAACGTCCTGCTGAACAAGTACGACGAATCGTTCATCAATGAGAATGCTATCAACGCCATCAAATCCTTGTTTGGATTCAACAAGAAATGAGCACTGAACTGGTCATGGTGGTAGGAGATATTGCATCTTTTGTCCAGCTGCAGTTGAACACTTCTGAAGATTTGCTAGGGTATATAGCACTTGGCAAAGAGCGGTTCAATTTTTCTTCCCTGCACATTAGTTCACACTTCACACACCAGTAGTTTTAGGTATTCTTGGTGAGATTCTGCAGAACGGTTTCAGTGTTCCCTCTTACTGTAACCAGTGGATGGAGATACACTTTGTAAATTCAAGCAACCAAATGTTAAGGAAATATATTGTGATTGTGCTTATGAATCTAACAAAAAAAGG]
consensusID : consensus_14447#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1051 fasta sequence
[TACGAGGAGTACGAGGTGGAGATCCTGAAGCCGTACGGGCTCAAGTTCGCCAAGGGCCGCGACGGCGGCACCTACATCGAGGCCATCCTCCCCGGCGCCGCCGCCGACCAGACCGGCAAGTTCGAAGTCGGCGACAAGGTCCTCGCCACCAGTGCTGTATTTGGGGAGGAAATCTGGCCGGCAGCAGGGTACGGACAGACCATGTACTGCATCCGTCAGAGGGTTGGCCCCCTCTACATGAAGATGGAGAAGAGATTTGGGAAATGGGATGGTGCTGCTGAGCTCAGTGAGAAGGAGATCATCAGGGCTGAGAGGAACTCCGGGGTGATCAGCAACAGGGTGAGGGAGATCCAGCTGCAAAATTACCAGAGGAAGATGGAGCAGAAGATGCAGAGAGAGGAGGATCTTCGCATGGGGCTGAGGCTGTACAAGGATGGTAAATATGAGGAGGCATTGGAGAAGTTCGAGTCAGTTTTGGGATCAAAACCTGAGATCAATGAGTCTTCCATAGCTAGCTACAATGTTGCCTGCTGTTACTCGAAGCTTGACCGGATACAAGCTGGTATTTCTGCACTGGAAGATGCCCTGAAAGCAGGTTATGAAGACTTCAAGAGAATTCGCACCGACCCGGATCTAGAAAACTTGAGGAAAACTGAGGAATTCAACGTCCTGCTGAACAAGTACGACGAATCGTTCATCAATGAGAATGCTATCAACGCCATCAAATCCTTGTTTGGATTCAACAAGAAATGAGCACTGAACTGGTCATGGTGGTAGGAGATATTGCATCTTTTCTCCAGCTGCAGTTGAACACTTCTGAAGCTTTGCTAGGCTATATAGCACTTGGCAAACACGGTTCAATTTTTCTCCCTGCCATTAGTTCACACTTCACACACCAGTAGTTTTAGCTATTCTTGGTGAGATTC-TGCAGAACGGTTTCAGTCTTCCCTCTTACTGTAACC-AGTCGATGGAGATACAC-TTTGTAAATTCAAGCAACCAAATGTTAAGGAAATATATTGTGATTGTGCTTATAAATTTATCCCAAATAGTA]
[+] EMBL AK062132 [TACGAGGAGTACGAGGTGGAGATCCTGAAGCCGTACGGGCTCAAGTTCGCCAAGGGCCGCGACGGCGGCACCTACATCGAGGCCATCCTCCCCGGCGCCGCCGCCGACCAGACCGGCAAGTTCGAAGTCGGCGACAAGGTCCTCGCCACCAGTGCTGTATTTGGGGAGGAAATCTGGCCGGCAGCAGGGTACGGACAGACCATGTACTGCATCCGTCAGAGGGTTGGCCCCCTCTACATGAAGATGGAGAAGAGATTTGGGAAATGGGATGGTGCTGCTGAGCTCAGTGAGAAGGAGATCATCAGGGCTGAGAGGAACTCCGGGGTGATCAGCAACAGGGTGAGGGAGATCCAGCTGCAAAATTACCAGAGGAAGATGGAGCAGAAGATGCAGAGAGAGGAGGATCTTCGCATGGGGCTGAGGCTGTACAAGGATGGTAAATATGAGGAGGCATTGGAGAAGTTCGAGTCAGTTTTGGGATCAAAACCTGAGATCAATGAGTCTTCCATAGCTAGCTACAATGTTGCCTGCTGTTACTCGAAGCTTGACCGGATACAAGCTGGTATTTCTGCACTGGAAGATGCCCTGAAAGCAGGTTATGAAGACTTCAAGAGAATTCGCACCGACCCGGATCTAGAAAACTTGAGGAAAACTGAGGAATTCAACGTCCTGCTGAACAAGTACGACGAATCGTTCATCAATGAGAATGCTATCAACGCCATCAAATCCTTGTTTGGATTCAACAAGAAATGAGCACTGAACTGGTCATGGTGGTAGGAGATATTGCATCTTTTCTCCAGCTGCAGTTGAACACTTCTGAAGCTTTGCTAGGCTATATAGCACTTGGCAAACACGGTTCAATTTTTCTCCCTGCCATTAGTTCACACTTCACACACCAGTAGTTTTAGCTATTCTTGGTGAGATTC TGCAGAACGGTTTCAGTCTTCCCTCTTACTGTAACC AGTCGATGGAGATACAC TTTGTAAATTCAAGCAACCAAATGTTAAGGAAATATATTGTGATTGTGCTTATAAATTTATCCCAAATAGTA]
[+] EMBL CB685836 [TACGAGGAGTACGAGGTGGAGATCCTGAAGCCGTACGGGCTCAAGTTCGCCAAGGGCCGCGACGGCGGCACCTACATCGAGGCCATCCTCCCCGGCGCCGCCGCCGACCAGACCGGCAAGTTCGAAGTCGGCGACAAGGTCCTCGCCACCAGTGCTGTATTTGGGGAGGAAATCTGGCCGGCAGCAGGGTACGGACAGACCATGTACTGCATCCGTCAGAGGGTTGGCCCCCTCTACATGAAGATGGAGAAGAGATTTGGGAAATGGGATGGTGCTGCTGAGCTCAGTGAGAAGGAGATCATCAGGGCTGAGAGGAACTCCGGGGTGATCAGCAACAGGGTGAGGGAGATCCAGCTGCAATATTACCAGAGGAAGATGGAGCAGAAGATGCAGAGAGAGGAGGATCTTCGCATGGGGCTGAGGCTGTACAAGGATGGTAAATATGAGGAGGC ]
[+] EMBL CB678036 [TACGAGGAGTACGAGGTGGAGATCCTGAAGCCGTACGGGCTCAAGTTCGCCAAGGGCCGCGACGGCGGCACCTACATCGAGGCCATCCTCCCCGGCGCCGCCGCCGACCAGACCGGCAAGTTCGAAGTCGGCGACAAGGTCCTCGCCACCAGTGCTGTATTTGGGGAGGAAATCTGGCCGGCAGCAGGGTACGGACAGACCATGTACTGCATCCGTCAGAGGGTTGGCCCCCTCTACATGAAGATGGAGAAGAGATTTGGGAAATGGGATGGTGCTGCTGAGCTCAGTGAGAAGGAGATCATCAGGGCTGAGAGGAACTCCGGGGTGATCAGCAACAG ]
[+] EMBL CB682980 [TACGAGGAGTACGAGGTGGAGATCCTGAAGCCGTACGGGCTCAAGTTCGCCAAGGGCCGCGACGGCGGCACCTACATCGAGGCCATCCTCCCCGGCGCCGCCGCCGACCAGACCGGCAAGTTCGAAGTCGGCGACAAGGTCCTCGCCACCAGTGCTGTATTTGGGGAGGAAATCTGGCCGGCAGCAGGGTACGGACAGACCATGTACTGCATCCGTCAGAGGGTTGGCCCCCTCTACATGAAGATGGAGAAGAGATTTGGGAAATGGGATGGTGCTGCTGAGCTCAGTGAGAAGGAGATCATCACGGCTGAGAGGAACTCCGGGGTGATCA ]
[+] EMBL CB683619 [TACGAGGAGTACGAGGTGGAGATCCTGAAGCCGTACGGGCTCAAGTTCGCCAAGGGCCGCGACGGCGGCACCTACATCGAGGCCATCCTCCCCGGCGCCGCCGCCGACCAGACCGGCAAGTTCGAAGTCGGCGACAAGGTCCTCGCCACCAGTGCTGTATTTGGGGAGGAAATCTGGCCGGCAGCACGGTACGGACAGACCATGTACTGCATCCGTCAGAGGGTTGGCCCCCTCTACATGAAGATGGAGAACAGATTTGGGAAATGGGATGGTGCTGCTGACCTCAGTGAGAAGGAGATCATCATGGCTGAGAGGAA ]
[-] EMBL CB682979 [ GGGTGGGCCCCCTCTACATGAAGATGGAGAAGAGATTTGGGAAATGGGATGGTGCTGCTGAGCTCAGTGAGAAGGAGATCATCAGGGCTGAGAGGAACTCCGGGGTGATCAGCAACAGGGTGAGGGAGATCCAGCTGCAAAATTACCAGAGGAAGATGGAGCAGAAGATGCAGAGAGAGGAGGATCTTCGCATGGGGCTGAGGCTGTACAAGGATGGTAAATATGAGGAGGCATTGGAGAAGTTCGAGTCAGTTTTGGGATCAAAACCTGAGATCAATGAGTCTTCCATAGCTAGCTACAATGTTGCCTGCTGTTACTCGAAGCTTGACCGGATACAAGCTGGTATTTCTGCACTGGAAGATGCCCTGAAAGCAGGTTATGAAGACTTCAAGAGAATTCGCACCGACCCGGATCTAGAAAACTTGAGGAAAACTGAGGAATTCAACGTCCTGCTGAACAAGTACGACGAATCGTTCATCAATGAGAATGCTATCAACGCCATCAAATCCTTGTTTGGATTCAACAAGAAATGAGCACTGAACTGGTCATGGTGGTAGGAGATATTGCATCTTTTCTCCAGCTGCAGTTGAACACTTCTGAAGCTTTGCTAGGCTATATAGCACTTGGCAAACACGGTTCAATTTTTCTCCCTGCCATTAGTTCACACTTCACACACCAGTAGTTTTAGCTATTCTTGGTGAGATTC TGCAGAACGGTTTCAGTCTTCCCTCTTACTGTAACC AGTCGATGGAGATACAC TTTGTAAATTCAAGCAACCAAATGTTAAGGAAATATATTGTGATTGTGCT ]
[-] EMBL CB685837 [ AGATTTGGGAAATGGGATGGTGCTGCTGAGCTCAGTGAGAAGGAGATCATCAGGGCTGAGAGGAACTCCGGGGTGATCAGCAACAGGGTGAGGGAGATCCAGCTGCAAAATTACCAGAGGAAGATGGAGCAGAAGATGCAGAGAGAGGAGGATCTTCGCATGGGGCTGAGGCTGTACAAGGATGGTAAATATGAGGAGGCATTGGAGAAGTTCGAGTCAGTTTTGGGATCAAAACCTGAGATCAATGAGTCTTCCATAGCTAGCTACAATGTTGCCTGCTGTTACTCGAAGCTTGACCGGATACAAGCTGGTATTTCTGCACTGGAAGATGCCCTGAAAGCAGGTTATGAAGACTTCAAGAGAATTCGCACCGACCCGGATCTAGAAAACTTGAGGAAAACTGAGGAATTCAACGTCCTGCTGAACAAGTACGACGAATCGTTCATCAATGAGAATGCTATCAACGCCATCAAATCCTTGTTTGGATTCAACAAGAAATGAGCACTGAACTGGTCATGGTGGTAGGAGATATTGCATCTTTTCTCCAGCTGCAGTTGAACACTTCTGAAGCTTTGCTAGGCTATATAGCACTTGGCAAACACGGTTCAATTTTTCTCCCTGCCATTAGTTCACACTTCACACACCAGTAGTTTTAGCTATTCTTGGTGAGATTC TGCAGAACGGTTTCAGTCTTCCCTCTTACTGTAACC AGTCGATGGAGATACAC TTTGTAAATTCAAGCAACCAAATGTTAAGGAAATATATTGTGAT ]
[-] EMBL CB678037 [ GATGGTGCTGCTGAGCTCAGTGAGAAGGAGATCATCAGGGCTGAGAGGAACTCCGGGGTGATCAGCAACAGGGTGAGGGAGATCCAGCTGCAAAATTACCAGAGGAAGATGGAGCAGAAGATGCAGAGAGAGGAGGATCTTCGCATGGGGCTGAGGCTGTACAAGGATGGTAAATATGAGGAGGCATTGGAGAAGTTCGAGTCAGTTTTGGGATCAAAACCTGAGATCAATGAGTCTTCCATAGCTAGCTACAATGTTGCCTGCTGTTACTCGAAGCTTGACCGGATACAAGCTGGTATTTCTGCACTGGAAGATGCCCTGAAAGCAGGTTATGAAGACTTCAAGAGAATTCGCACCGACCCGGATCTAGAAAACTTGAGGAAAACTGAGGAATTCAACGTCCTGCTGAACAAGTACGACGAATCGTTCATCAATGAGAATGCTATCAACGCCATCAAATCCTTGTTTGGATTCAACAAGAAATGAGCACTGAACTGGTCATGGTGGTAGGAGATATTGCATCTTTTCTCCAGCTGCAGTTGAACACTTCTGAAGCTTTGCTAGGCTATATAGCACTTGGCAAACACGGTTCAATTTTTCTCCCTGCCATTAGTTCACACTTCACACACCAGTAGTTTTAGCTATTCTTGGTGAGATTC TGCAGAACGGTTTCAGTCTTCCCTCTTACTGTAACC AGTCGATGGAGATACAC TTTGTAAATTCAAGCAACCAAATGTTAAGGAAATATATTGTGATTGTGCTTA ]
[+] EMBL OSA417523 [ TGTACAAGGATGGTAAATATGAGGAGGCGTTGGAGAAGTTCGAGTCAGTTTTGGGATCAAAACCTGAGATCAATGAGTCTTCCATAGCTAGCTACAATGTTGCCTGCTGTTACTCGAAGCTTGACCGGATACAAGCTGGTATTTCTGCACTGGAAGATGCCCTGAAAGCAGGTTATGAAGACTTCAAGAGAATTCGCACCGACCCGGATCTAGAAAACTTGAGGAAAACTGAGGAATTCAACGTCCTGCTGAACAAGTACGACGAATCGTTCATCAATGAGAATGCTATCAACGCCATCAAATCCTTGTTTGGATTCAACAAGAAATGAGCACTGAACTGGTCATGGTGGTAGGAGATATTGCATCTTTTCTCCAGCTGCAGTTGAACACTTCTGAAGCTTTGCTAGGCTATATAGCACTTGGCAAACACGGTTCAATTTTTCTCCCTGCCATTAGTTCACACTTCACACACCAGTAGTTTTAGCTATTCTTGGTGAGATTCTTGCAGAACGGGTTCAGTCTTCCCTCTTACTGTAACCAAGCCGGTGGAGATACACTTTTGTA ]
[+] EMBL CB680693 [ GCTACACTGTTGCCTGCTGTTACTCTAAGCTTGACCGGATACAAGCTGGGATTTCTGCACTGGAAGATGCCCTGAAAGCAGGTTATGAAGACTTCAAGAGAATTCGCACCGACCCGGATCTAGAAAACTTGAGGAAAACTGAGGAATTCAACGTCCTGCTGAACAAGTACGACGAATCGTTCATCAATGAGAATGCTATCAACGCCATCAAATCCTTGTTTGGATTCAACAAGAAATGAGCACTGAACTGGTCATGGTGGTAGGAGATATTGCATCTTTTCTCCAGCTGCAGTTGAACACTTCTGAAGCTTTGCTAGGCTATATAGCACTTGGCAAACACGGGTCAATTTTTCTCCCTGCCATTAGTTCACACTTCACACACCAGTAGTTTTAGCTATTCTTGGTGAGATTC TGCAGAACGGTTTCAGTCTTCCCTCTTACTGTAACC AGTCGATGGAGATACAC TTTGTAAATTCAAGCAACCAAATGTTAAGGAAATATATTGTGATTGTGC ]
consensusID : consensus_14447#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1017 fasta sequence
[CCAAAGTTCGCCAAGGGCCGCGACGGCGGCACCTACATCGAGGCCATCCTCCCCGGCGCCGCCGCCGACCAGACCGGCAAGTTCGAAGTCGGCGACAAGGTCCTCGCCACCAGTGCTGTATTTGGGGAGGAAATCTGGCCGGCAGCAGGGTACGGACAGACCATGTACTGCATCCGTCAGAGGGTTGGCCCCCTCTACATGAAGATGGAGAAGAGATTTGGGAAATGGGATGGTGCTGCTGAGCTCAGTGAGAAGGAGATCATCAGGGCTGAGAGGAACTCCGGGGTGATCAGCAACAGGGTGAGGGAGATCCAGCTGCAAAATTACCAGAGGAAGATGGAGCAGAAGATGCAGAGAGAGGAGGATCTTCGCATGGGGCTGAGGCTGTACAAGGATGGTAAATATGAGGAGGCATTGGAGAAGTTCGAGTCAGTTTTGGGATCAAAACCTGAGATCAATGAGTCTTCCATAGCTAGCTACAATGTTGCCTGCTGTTACTCGAAGCTTGACCGGATACAAGCTGGTATTTCTGCACTGGAAGATGCCCTGAAAGCAGGTTATGAAGACTTCAAGAGAATTCGCACCGACCCGGATCTAGAAAACTTGAGGAAAACTGAGGAATTCAACGTCCTGCTGAACAAGTACGACGAATCGTTCATCAATGAGAATGCTATCAACGCCATCAAATCCTTGTTTGGATTCAACAAGAAATGAGCACTGAACTGGTCATGGTGGTAGGAGATATTGCATCTTTCCTCCAGCTGCAGTTGAACACTTCTGAAGCTTTGCTAGGCTATATAGCACTTGGCAAACACGGTTCAATTTTTCTCCCTGCCATTAGTTCACACTTCACACACCAGTAGTTTTAGCTATTCTTGGTGAGATTCTGCAGAACGGTTTCAGTCTTCCCTCTTACTGTAACCAGTCGATGGAGATACACTTTGTAAATTCAAGCAACCAAATGTTAAGGAAATATATTGTGATTGTGCTTAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AF272978 [CCAAAGTTCGCCAAGGGCCGCGACGGCGGCACCTACATCGAGGCCATCCTCCCCGGCGCCGCCGCCGACCAGACCGGCAAGTTCGAAGTCGGCGACAAGGTCCTCGCCACCAGTGCTGTATTTGGGGAGGAAATCTGGCCGGCAGCAGGGTACGGACAGACCATGTACTGCATCCGTCAGAGGGTTGGCCCCCTCTACATGAAGATGGAGAAGAGATTTGGGAAATGGGATGGTGCTGCTGAGCTCAGTGAGAAGGAGATCATCAGGGCTGAGAGGAACTCCGGGGTGATCAGCAACAGGGTGAGGGAGATCCAGCTGCAAAATTACCAGAGGAAGATGGAGCAGAAGATGCAGAGAGAGGAGGATCTTCGCATGGGGCTGAGGCTGTACAAGGATGGTAAATATGAGGAGGCATTGGAGAAGTTCGAGTCAGTTTTGGGATCAAAACCTGAGATCAATGAGTCTTCCATAGCTAGCTACAATGTTGCCTGCTGTTACTCGAAGCTTGACCGGATACAAGCTGGTATTTCTGCACTGGAAGATGCCCTGAAAGCAGGTTATGAAGACTTCAAGAGAATTCGCACCGACCCGGATCTAGAAAACTTGAGGAAAACTGAGGAATTCAACGTCCTGCTGAACAAGTACGACGAATCGTTCATCAATGAGAATGCTATCAACGCCATCAAATCCTTGTTTGGATTCAACAAGAAATGAGCACTGAACTGGTCATGGTGGTAGGAGATATTGCATCTTTCCTCCAGCTGCAGTTGAACACTTCTGAAGCTTTGCTAGGCTATATAGCACTTGGCAAACACGGTTCAATTTTTCTCCCTGCCATTAGTTCACACTTCACACACCAGTAGTTTTAGCTATTCTTGGTGAGATTCTGCAGAACGGTTTCAGTCTTCCCTCTTACTGTAACCAGTCGATGGAGATACACTTTGTAAATTCAAGCAACCAAATGTTAAGGAAATATATTGTGATTGTGCTTAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CB683149 [ AGATCATCAGGGCTGAGAGGAACTCCGGGGTGATCAGCAACAGGGTGAGGGAGATCCAGCTGCAAAATTACCAGAGGAAGATGGAGCAGAAGATGCAGAGAGAGGAGGATCTTCGCATGGGGCTGAGGCTGTACAAGGATGGTAAATATGAGGAGGCATTGGAGAAGTTCGAGTCAGTTTTGGGATCAAAACCTGAGATCAATGAGTCTTCCATAGCTAGATACAATGTTGCCTGGTGTTACTCGAAGTTTGACCGGATACAAGCTGGTATTTCTGCACTGGAAGATGCCCTGAAAGCAGGTTATGAAGACTTCAAGAGAATTGGCCCCGACCCGGATTTAGAAAACTTGAGGAAAACTGAGGAATTTAATGTCCTGCTGAACAAGTATGATGAATCGTTCATCAATGAGAATGGTA ]
consensusID : consensus_14447#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 388 fasta sequence
[TTCCTGGCGCCACCACATCGCGGGAGATGAGCCACACAAGCGTCTCCTCCTCCTCCTCCTCCGCCTCATCTCCACCACCACCGCGAGCTCGCCAGCGCCACGATTCCCGAGGCCCAGGAGAGCGCGAGCCGCCGCCGCCGCAGCAGCAGCCTAGCTCCTAGCTAGCCAGCCATGGCGCTCGCCCACCAGCTGGTCGCCAACCGGCCGCTCCTCCCCACCCCGGCGCCGCGCGTCCCCAGGGCCAGCATCAGCAACGCGCGGCCGCAGCCACTTCTTGGCCGGGACTGCCGCCTGACGCTGCTGCGGGCGGAGAGGAGGACGCTCGCCGTCGCCCGGGCGTCGTCGTCGTCGTCGTCGTCGTCGTCGCAGACGGAGCCCAAGTCGGAGG]
[+] EMBL CB621129 [TTCCTGGCGCCACCACATCGCGGGAGATGAGCCACACAAGCGTCTCCTCCTCCTCCTCCTCCGCCTCATCTCCACCACCACCGCGAGCTCGCCAGCGCCACGATTCCCGAGGCCCAGGAGAGCGCGAGCCGCCGCCGCCGCAGCAGCAGCCTAGCTCCTAGCTAGCCAGCCATGGCGCTCGCCCACCAGCTGGTCGCCAACCGGCCGCTCCTCCCCACCCCGGCGCCGCGCGTCCCCAGGGCCAGCATCAGCAACGCGCGGCCGCAGCCACTTCTTGGCCGGGACTGCCGCCTGACGCTGCTGCGGGCGGAGAGGAGGACGCTCGCCGTCGCCCGGGCGTCGTCGTCGTCGTCGTCGTCGTCGTCGCAGACGGAGCCCAAGTCGGAGG]
[+] EMBL CA753915 [ CTCATCTCCACCACCACCGCGAGCTCGCCAGCGCCACGATTCCCGAGGCCCAGGAGAGCGCGAGCCGCCGCCGCCGCAGACGCAGCCTAGCTCCTAGCTAGCCAGCCATGGCGCTCCCCCACCAGCTGGTCGCCAACCGGCCGCTCCTCCCCACCCCGGCGCCGCGCGTCCCCAGGGCCAGCATCAGCAACGCGCGGCCGCAGCCACTTCTTGGCCGGGACTGCCGCCTGACGCTGCTGCGGGCGGAGAGGAGGACGCTCGCCGTCGCCCGGGCGTCGTCGTCGTCGTCGTCGTCGTCGTCGCAGACGGAGCCCAAGTCGGAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14447#1 ----------------------------------TACGAGGAGTACGAGGTGGAGATCCT 26
consensus_14447#2 ------------------------------------------------------------
consensus_14447#0 GTCTCCTCCTCCTCCTCCTCCGCCTCATCTCCACCACCACCGCGAGCTCGCCAGCGCCAC 60
consensus_14447#3 ------------------------------------------------------------
consensus_14447#1 GAAGCCGTACGGGCTCAAGTTCGCCAAGGGCCGCGACGGCGGCACCTACATCGAGGCCAT 86
consensus_14447#2 -------------CCAAAGTTCGCCAAGGGCCGCGACGGCGGCACCTACATCGAGGCCAT 47
consensus_14447#0 GATTCCCGAGGCCCAGGAGAGCGCGAGCCGCCGCCACCGCAGCAGCAGCCTAGCTCCTAG 120
consensus_14447#3 ------TTCCTGGCGCCACCACATCGCGGGAGATGA--GCCACACAAGCGTCTCCTCCTC 52
* * * * * ** ** * * *
consensus_14447#1 CCTCCCCGGCGCCGC---CGCCGACCAGACCGGCAAGTTCGAAGTCGGCGACAAGGTCCT 143
consensus_14447#2 CCTCCCCGGCGCCGC---CGCCGACCAGACCGGCAAGTTCGAAGTCGGCGACAAGGTCCT 104
consensus_14447#0 CTAGCCAGCCATGGCGCTCGCCCACCAGACCGGCAAGTTCGAAGTCGGCGACAAGGTCCT 180
consensus_14447#3 CTCCTCCTCCGCCTCA--TCTCCACCACCACCGCGAGCTCG---CCAGCGCCACGATTCC 107
* * * * * **** * ** ** *** * *** ** * * *
consensus_14447#1 CGCCACCAGTGCTGTATTTGGGGAGGAAATCTGGCCGGCAGCAGGGTACGGACAGACCAT 203
consensus_14447#2 CGCCACCAGTGCTGTATTTGGGGAGGAAATCTGGCCGGCAGCAGGGTACGGACAGACCAT 164
consensus_14447#0 CGCCACCAGTGCTGTATTTGGGGAGGAAATCTGGCCGGCAGCAGGGTACGGACAGACCAT 240
consensus_14447#3 CGAGGCCCA----------GGAGAGCGCGAGCCGCCGCCGCCGCAGCAGCAGCCTAGCTC 157
** ** ** *** **** * * * * * * *
consensus_14447#1 GTACTGCATCCGTCAGAGGGTTGGCCCCCTCTACATGAAGATGGAGAAGAGATTTGGGAA 263
consensus_14447#2 GTACTGCATCCGTCAGAGGGTTGGCCCCCTCTACATGAAGATGGAGAAGAGATTTGGGAA 224
consensus_14447#0 GTACTGCATCCGTCAGAGGGTTGGCCCCCTCTACATGAAGATGGAGAAGAGATTTGGGAA 300
consensus_14447#3 CTAGCTAGCCAGCCATGGCGCTCGCCCACC--------AGCTGG----------TCGCCA 199
** * * ** * * * **** * ** *** * * *
consensus_14447#1 ATGGGATGGTGCTGCTGAGCTCAGTGAGAAGGAGATCATCAGGGCTGAGAGGAACTCCGG 323
consensus_14447#2 ATGGGATGGTGCTGCTGAGCTCAGTGAGAAGGAGATCATCAGGGCTGAGAGGAACTCCGG 284
consensus_14447#0 ATGGGATGGTGCTGCTGAGCTCAGTGAGAAGGAGATCATCAGGGCTGAGAGGAACTCCGG 360
consensus_14447#3 ACCGGCCGCTCCTCCCCACCCCGGCGCCGCGCG--TCCCCAGGGC------------CAG 245
* ** * * ** * * * * * * * ** ****** * *
consensus_14447#1 GGTGATCAGCAACAGGGTGAGGGAGATCCAGCTGCAAAATTACCAGAGGAAGATGGAGCA 383
consensus_14447#2 GGTGATCAGCAACAGGGTGAGGGAGATCCAGCTGCAAAATTACCAGAGGAAGATGGAGCA 344
consensus_14447#0 GGTGATCAGCAACAGGGTGAGGGAGATCCAGCTGCAAAATTACCAGAGGAAGATGGAGCA 420
consensus_14447#3 CATCAGCAACGCGCGGCCGCAGCCACTTCTTGGCCGGGACTGCCGCCTGACGCTGCTGCG 305
* * ** * ** * * * * * * * ** ** * ** **
consensus_14447#1 GAAGATGCAGAGAGAGGAGGATCTTCGCATGGGGCTGAGGCTGTACAAGGATGGTAAATA 443
consensus_14447#2 GAAGATGCAGAGAGAGGAGGATCTTCGCATGGGGCTGAGGCTGTACAAGGATGGTAAATA 404
consensus_14447#0 GAAGATGCAGAGAGAGGAGGATCTTCGCATGGGGCTGAGGCTGTACAAGGATGGTAAATA 480
consensus_14447#3 GGCG-------GAGAGGAGGACGCTCGC-CGTCGCCCGGGCGTCGTCGTCGTCGTCGTCG 357
* * ********** **** * ** *** * **
consensus_14447#1 TGAGGAGGCATTGGAGAAGTTCGAGTCAGTTTTGGGATCAAAACCTGAGATCAATGAGTC 503
consensus_14447#2 TGAGGAGGCATTGGAGAAGTTCGAGTCAGTTTTGGGATCAAAACCTGAGATCAATGAGTC 464
consensus_14447#0 TGAGGAGGCATTGGAGAAGTTCGAGTCAGTTTTGGGATCAAAACCTGAGATCAATGAGTC 540
consensus_14447#3 TC-GTCGTCGCAGACGGAGCCCAAGTCGGAGG---------------------------- 388
* * * * * * ** * **** *
consensus_14447#1 TTCCATAGCTAGCTACAATGTTGCCTGCTGTTACTCGAAGCTTGACCGGATACAAGCTGG 563
consensus_14447#2 TTCCATAGCTAGCTACAATGTTGCCTGCTGTTACTCGAAGCTTGACCGGATACAAGCTGG 524
consensus_14447#0 TTCCATAGCTAGCTACAATGTTGCCTGCTGTTACTCGAAGCTTGACCGGATACAAGCTGG 600
consensus_14447#3 ------------------------------------------------------------
consensus_14447#1 TATTTCTGCACTGGAAGATGCCCTGAAAGCAGGTTATGAAGACTTCAAGAGAATTCGCAC 623
consensus_14447#2 TATTTCTGCACTGGAAGATGCCCTGAAAGCAGGTTATGAAGACTTCAAGAGAATTCGCAC 584
consensus_14447#0 TATTTCTGCACTGGAAGATGCCCTGAAAGCAGGTTATGAAGACTTCAAGAGAATTCGCAC 660
consensus_14447#3 ------------------------------------------------------------
consensus_14447#1 CGACCCGGATCTAGAAAACTTGAGGAAAACTGAGGAATTCAACGTCCTGCTGAACAAGTA 683
consensus_14447#2 CGACCCGGATCTAGAAAACTTGAGGAAAACTGAGGAATTCAACGTCCTGCTGAACAAGTA 644
consensus_14447#0 CGACCCGGATCTAGAAAACTTGAGGAAAACTGAGGAATTCAACGTCCTGCTGAACAAGTA 720
consensus_14447#3 ------------------------------------------------------------
consensus_14447#1 CGACGAATCGTTCATCAATGAGAATGCTATCAACGCCATCAAATCCTTGTTTGGATTCAA 743
consensus_14447#2 CGACGAATCGTTCATCAATGAGAATGCTATCAACGCCATCAAATCCTTGTTTGGATTCAA 704
consensus_14447#0 CGACGAATCGTTCATCAATGAGAATGCTATCAACGCCATCAAATCCTTGTTTGGATTCAA 780
consensus_14447#3 ------------------------------------------------------------
consensus_14447#1 CAAGAAATGAGCACTGAACTGGTCATGGTGGTAGGAGATATTGCATCTTTTCTCCAGCTG 803
consensus_14447#2 CAAGAAATGAGCACTGAACTGGTCATGGTGGTAGGAGATATTGCATCTTTCCTCCAGCTG 764
consensus_14447#0 CAAGAAATGAGCACTGAACTGGTCATGGTGGTAGGAGATATTGCATCTTTTCTCCAGCTG 840
consensus_14447#3 ------------------------------------------------------------
consensus_14447#1 CAGTTGAACACTTCTGAAGCTTTGCTAGGCTATATAGCACTTGGCAAACACGGTTCAATT 863
consensus_14447#2 CAGTTGAACACTTCTGAAGCTTTGCTAGGCTATATAGCACTTGGCAAACACGGTTCAATT 824
consensus_14447#0 CAGTTGAACACTTCTGAAGCTTTGCTAGGCTATATAGCACTTGGCAAACACGGTTCAATT 900
consensus_14447#3 ------------------------------------------------------------
consensus_14447#1 TTTCTCCCTGCCATTAGTTCACACTTCACACACCAGTAGTTTTAGCTATTCTTGGTGAGA 923
consensus_14447#2 TTTCTCCCTGCCATTAGTTCACACTTCACACACCAGTAGTTTTAGCTATTCTTGGTGAGA 884
consensus_14447#0 TTTCTCCCTGCCATTAGTTCACACTTCACACACCAGTAGTTTTAGCTATTCTTGGTGAGA 960
consensus_14447#3 ------------------------------------------------------------
consensus_14447#1 TTCTGCAGAACGGTTTCAGTCTTCCCTCTTACTGTAACCAGTCGATGGAGATACACTTTG 983
consensus_14447#2 TTCTGCAGAACGGTTTCAGTCTTCCCTCTTACTGTAACCAGTCGATGGAGATACACTTTG 944
consensus_14447#0 TTCTGCAGAACGGTTTCAGTCTTCCCTCTTACTGTAACCAGTCGATGGAGATACACTTTG 1020
consensus_14447#3 ------------------------------------------------------------
consensus_14447#1 TAAATTCAAGCAACCAAATGTTAAGGAAATATATTGTGATTGTGCTTATAAATTTATCCC 1043
consensus_14447#2 TAAATTCAAGCAACCAAATGTTAAGGAAATATATTGTGATTGTGCTTAAAAAAAAAAAAA 1004
consensus_14447#0 TAAATTCAAGCAACCAAATGTTAAGGAAATATATTGTGATTGTGCTTATAAATTTATCCC 1080
consensus_14447#3 ------------------------------------------------------------
consensus_14447#1 AAATAGTA----- 1051
consensus_14447#2 AAAAAAAAAAAAA 1017
consensus_14447#0 AAATAGG------ 1087
consensus_14447#3 -------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||