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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14458#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 605 fasta sequence
[AAGGAAACCCTAAGCGAAGCGGAGGA-GAGAAAGCAATGGCATCCCTGAGCAAGCGCGGCGGCGGCGGCGGCGAGGGGGAGGGCATCCTGGCCTCCTTCTCCCGGTCTTCGGTGGCGGCGCATGGGCGCGAGGCGGCGACCATGGCGAAGAAGCTGCTGCGGAGCACGGGGAAGGCGGCCTGGATCGCGGGGA-CCACCTTCCTCGTCCTCGTCGTCCCGCTCATCATCGAGATGGACCGCGAGCAGCAGCTCAACGACCTCGAGCTCCAGCAGCAGGCGCTCCTCGGCGGGCCGCCACCGCCCGCGCCTCTCAAATGATCCATCCGTCCATCCTTAGCT-TCTACTGCTGCCTACCTATGTCGTCGTCGTCGTCGTCTTAGTCTTTTTCTTCTTTTCTTCTTCTCTTAGTGTACACTGCTGCTACTAGTGTTTTTGCCTGTCTAGTCGGACAAATCAAAACTTTCTTGTTTTCATCATCGATCTATGCTATGCTGCTCTGATGAGATGTCGCTTTTTCTTTCCTGCTGCTACTTTATTTTCACGCTCATCTTATCATGCCGAATAAATCGATCGGTTNCTATAAAAAATTCTGTGCAAAAAAAAAAA]
[+] EMBL AK059542 [AAGGAAACCCTAAGCGAAGCGGAGGA GAGAAAGCAATGGCATCCCTGAGCAAGCGCGGCGGCGGCGGCGGCGAGGGGGAGGGCATCCTGGCCTCCTTCTCCCGGTCTTCGGTGGCGGCGCATGGGCGCGAGGCGGCGACCATGGCGAAGAAGCTGCTGCGGAGCACGGGGAAGGCGGCCTGGATCGCGGGGA CCACCTTCCTCGTCCTCGTCGTCCCGCTCATCATCGAGATGGACCGCGAGCAGCAGCTCAACGACCTCGAGCTCCAGCAGCAGGCGCTCCTCGGCGGGCCGCCACCGCCCGCGCCTCTCAAATGATCCATCCGTCCATCCTTAGCT TCTACTGCTGCCTACCTATGTCGTCGTCGTCGTCGTCTTAGTCTTTTTCTTCTTTTCTTCTTCTCTTAGTGTACACTGCTGCTACTAGTGTTTTTGCCTGTCTAGTCGGACAAATCAAAACTTTCTTGTTTTCATCATCGATCTATGCTATGCTGCTCTGATGAGATGTCGCTTTTTCTTTCCTGCTGCTACTTTATTTTCACGCTCATCTTATCATGCCGAATAAATCGAT ]
[+] EMBL AU162296 [ AGCGNAG ATAGGANGANAAANCAATGGCATCCCTGAGCAAGCGCGGCGGCGGCGGCGGCGAGGGGGANGGCATCCTGGCCTCCTTCTCCCGGTCTTCGGTGGCGGCGCATGGGCGCGAGGCGGCGACCATGGCGAAGAAGCTGCTGCGGA NACGGGGAAGGCGGCCTGGATCGCGGGGA CCACCTTCCTCGTCCTCGTCGTCCCGCTCATCATCGAGATGGACCGCGAGCAGna ]
[+] EMBL AU164638 [ AGCGGAGGA GAGAAAGCAATGGCATCCCTGAGCAAGCGCGGCGGCGGCGGCGGCGAGGGGGAGGGCATCCTGGCCTCCTTCTCCCGGTCTTCGGTGGCGGCGCATGGGCGCGAGGCGGCGACCATGGCGAAGAAGCTGCTGCGGAGCACGGGGAAGGCGGCCTGGATCGCGGGGA CCACCTTCCTCGTCCTCGTCGTCCCGCTCATCATCGAGATGGACCGCGAGCAGCAGCTCAACGACCTCGAGCTCCAGCAGCAGGCGCTCCTCGGCGGGCCGCCACCGCCCGCGCCTCTCAAATGATCCATCCGTCCATCCTTAGCT TCTACTGCTGCCTACCTATGTCGTCGTCGTCGTCGTCTTAGTCTTTTTCTTCTTTTCTTCTTCTCTTAGTGTACACTGCTGCTACTAGTGTTTTTGCCTGTCTAGTCGGACAAATCAAAACTTTCTTGTTTTCATCATCGATCTATGCTATGCTGCTCTGATGAGAaaaaaa ]
[+] EMBL OSR08592A [ aagananGGA GAGAAAGCAATGGCATCCCTGAGCAAGCGCGGCGGCGGCGGCGGCGAGGGGGAGGGCATCCTGGCCTCCTTCTCCCGGTCTTCGGTGGCGGCGCATGGGCGCNAGGCGGCGACCATGGCGAAGAAGCTGCTGCGGA NACGGGGAAGGCGGCCTNGATCGCGGGGA CCACCTTCCTCGTCCTCGTCGTCCCGCTCATCATCGAGATGGACCGCGAGCAGCAGCTCAACGACCTCGAGCTCCAGCAGCAGGCGCTCCT ]
[+] EMBL AU075615 [ AGAAAGCAATGGCATCCCTGAGCAAGCGCGGCGGCGGCGGCGGCGAGGGGGAGGGCATCCTGGCCTCCTTCTCCCGGTCTTCGGTGGCGGCGCATGGGCGCGAGGCGGCGACCATNGCGAAGAAGCTGCTGCGGA CACGGGGAAGGCGGCCTGGATCGCGGGGA CCACCTTCCTCGTCCTCGTCGTCCCGCTCATCATCGAGATGGACCGCGAGCAGCAGCTCAACGACCTCGAGCTCCAGCAGCAGGCGCTCCTCGGCGGGCCGCCACCGCCCGCNCCTCTCAAATGATCCATCCGTCCATCCTTAGCT TCTACTGCTGCCTACCTATGTCGTCGTCGTCGTCGTCTTAGTCTTTTTCTTCTTTTCTTCTTCTCTTAGTGTACACTGCTGCTACTAGTGTTTTTGCCTGTCTAGTCGGACAAATCAAAACTTTCTTGTTTT ]
[+] EMBL AU166187 [ AATGGCATNCCTGAGCAAGCGCGGCGGCGGCGGCGGCGAGGGGGAGGGCATCCTGGCCTCCTTCTCCCGGTCTTCGGTGGCGGCGCATGGGCGCGAGGCGGCGACCATGGCGAAGAAGCTGCTGCGGA CACGGGGAAGGCGGCCTGGATCGCGGGGA CCAACTTNCTCGTCCTCGTCGTCCCGCTCATCATCCTGATAGACCGCGAGCAGCAAGTCAACGACTTCGAGTTCCAGAAGCAn ]
[-] EMBL CB966888 [ TGGCGTCCCTGAGCAAGCGCGGCGGCGGCGGCGGCGAGGGGGAGGGCATCCTGGCCTCCTTCTCCCGGTCTTCGGTGGCGGCGCATGGGCGCGAGGCGGCGACCATGGCGAAGAAGCTGCTGCGGAGCACGGGGAAGGCGGCCTGGATCGCGGGGACCCACCTTCCTCGTCCTCGTCGTCCCGCTCATCATCGAGATGGACCGCGAGCAGCAGCTCAACGACCTCGAGCTCCAGCAGCAGGCGCTCCTCGGCGGGCCGCCACCGCCCGCGCCTCTCAAATGATCCATCCGTCCATCCTTAGCT TCAACTGCTGCCTACCTATGTCGTCGTCGTCGTCGTCTTAGTCTTTTTCTTCTTTTCTTCTTCTCTTAGTGTACACTGCTGCTACTAGTGTTTTTGCCTGTCTAGTCGGACAAATCAAAACTTTCT ]
[-] EMBL BU673050 [ TGGCGTCCCTGAGCAAGCGCGGCGGCGGCGGCGGCGAGGGGGAGGGCATCCTGGCCTCCTTCTCCCGGTCTTCGGTGGCGGCGCATGGGCGCGAGGCGGCGACCATGGCGAAGAAGCTGCTGCGGAGCACGGGGAAGGCGGCCTGGATCGCGGGGA CCACCTTCCTCGTCCTCGTCGTCCCGCTCATCATCGAGATGGACCGCGAGCAGCAGCTCAACGACCTCGAGCTCCAGCAGCAGGCGCTCCTCGGCGGGCCGCCACCGCCCGCGCCTCTCAAATGATCCATCCGTCCATCCTTAGCT TCAACTGCTGCCTACCTATGTCGTCGTCGTCGTCGTCTTAGTCTTTTTCTTCTTTTCTTCTTCTCTTAGTGTACACTGCTGCTACTAGTGTTTTTGCCTGTCTAGTCGGACAAATCAAAACTTTCTT ]
[+] EMBL AU075616 [ CGGCGGCGAGGGGGAGGGCATCCTGGCCTCCTTCTCCCGGTCTTCGGTGNCGGCGNATGGGCGCGAGGCGGCGACCATGGCGAAGAAGCTGCTGCGGAGCACGGGGAAGGCGGCCTGGATCGCGGGGA CCACCTTCCTCGTCCTCGTCGTCCCGCTCATCATCGAGATGGACCGCGAGCAGCAGCTCAACGACCTCGAGCTCCAGCAGCAGGCGCTCCTCGGCGGGCCGCCACCGCCCGCGCCTCTCAAATGATCCATCCGTCCATCCTTAGCT TCTACTGCTGCCTACCTATGTCGTCGTCGTCGTCGTCTTAGTCTTTTTCTTCTTTTCTTCTTCTCTTAGTGTACACTGCTGCTACTAGTGTTTTTGCCTGTCTAGTCGGACAAATCAAAACTTTCTTGTTTTCATCATCGATCTATGCTATGCTGCTCTGATGAGATGTCGCTTTTTCTTTCCTGCTGCTACTTTATTTTCACGCTCATCTTATCATGCCGAATAAATCGATCGGTTACTATATTTCATTCTGTGCAAAAAAAAAAA]
[+] EMBL CA756915 [ AGCAGCAGGCGCTCCTCGGCGGGCCGCCACCGCCCGCGCCTCTCAAATGATCCATCCGTCCATCCTTAGCTCTCAACTGCTGCCTACCTATGTCGTCGTCGTCGTCGTCTTAGTCTTTTTCTTCTTTTCTTCTTCTCTTAGTGTACACTGCTGCTACTAGTGTTTTTGCCTGTCTAGTCGGACAAATCAAAACTTTCTTGTTTTCAaaaaaaa ]
[+] EMBL AU058402 [ CCTCGGCGGGCCGCCACCGCCCGCGCCTCTCAAATGATCCATCCGTCCATCCTTAGCT TCTACTGCTGCCTACCTATGTCGTCGTCGTCGTCGTCTTAGTCTTTTTCTTCTTTTCTTCTTCTCTTAGTGTACACTGCTGCTACTAGTGTTTTTGCCTGTCTAGTCGGACAAATCAAAACTTTCTTGTTTTCATCATCGATCTATGCTATGCTGCTCTGATGAGATGTCGCTTTTTCTTTCCTGCTGCTACTTTATTTTCACGCTCATCTTATCATGCCGAATAAATCGATCGGTTNCTNTAAAAA ]
[+] EMBL CF331538 [ CTCAAATGATCCATCTGTCCATCCTTAGCT TCTACTGCTGCCTACCTATGTCGTCGTCGTCGTCGTCTTAGTCTTTTTCTTCTTTTCTTCTTCTCTTAGTGTACACTGCTGCTACTAGTGTTTTTGCCTGTCTAGTCGGACAAATCAAAACTTTCTTGTTTTCATCATCGATCTATGCTATGCTGCTCTGATGAGATGTCGCTTTTTCaaaaaaaa ]
[+] EMBL AU058326 [ CTTTCTTGTTTTCATCATCGATCTATGCTATGCTGCTCTGATGAGATGTCGCTTTTTCTTTCCTGCTGCTACTTTATTTTCACGCTCATCTTATCATGCCGAATAAATCGATCGGTTNCTATAAAAA ]
consensusID : consensus_14458#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 470 fasta sequence
[CTAAGCGAACCGGAGGAGAGAAACCAATGGCGTCCCTGAGCAAGCGCGCGCGCGCGCGAGGGGGAGGACATCCTGCCCTCCTTCTCCCGGTCTTCGGTGCGGCGCATGGGCCGAGCCGCGACCATGGCGAAGAAGCTGCTGCGGAGCACGGGGAAGCCGCCTGGATCGCGGGGACCACCTTCCTCGTCCTCGTCGTCCCGCTCATCATCGAGATGGACCGCGACAGCAGCTCAACGACCTCGAGCTCCAGCAGCAGGCGCTCCTCGGCGGCCGCCACCGCCCGCGCCTCTCAAATGATCCATCCGTCCATCCTTAGCTTCTACTGCTGCCTACCTATGTCGTCGTCGTCGTCGTCTTAGTCTTTTTCTTCTTTTCTTCTTCTCTTAGTGTACACCTGCTGCTACTAGTGTTTTTGCCTGTCTAGTCGGACAATCAAACTTTCTTGTTTTCATCATCGATCAAAAAAAAAA]
[+] EMBL BI795005 [CTAAGCGAACCGGAGGAGAGAAACCAATGGCGTCCCTGAGCAAGCGCGCGCGCGCGCGAGGGGGAGGACATCCTGCCCTCCTTCTCCCGGTCTTCGGTGCGGCGCATGGGCCGAGCCGCGACCATGGCGAAGAAGCTGCTGCGGAGCACGGGGAAGCCGCCTGGATCGCGGGGACCACCTTCCTCGTCCTCGTCGTCCCGCTCATCATCGAGATGGACCGCGACAGCAGCTCAACGACCTCGAGCTCCAGCAGCAGGCGCTCCTCGGCGGCCGCCACCGCCCGCGCCTCTCAAATGATCCATCCGTCCATCCTTAGCTTCTACTGCTGCCTACCTATGTCGTCGTCGTCGTCGTCTTAGTCTTTTTCTTCTTTTCTTCTTCTCTTAGTGTACACCTGCTGCTACTAGTGTTTTTGCCTGTCTAGTCGGACAATCAAACTTTCTTGTTTTCATCATCGATCAAAAAAAAAA]
consensusID : consensus_14458#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 367 fasta sequence
[GCGTCCCTGAGCAAGCGCGGCGGCGGCGGCGGCGAAGGGGAGGGCATCCTGGCGTCATGGATGGCGGCGCATGGGCGCGAGGCGGCGAGCAGGGCGAAGAAGGTGGTGCGGACGTGTGNGAAGGCGGCGTGGATCGCGGGGACCACCTTCCTGGTCCTCGTCGTCCCGCTCATCATCGAGATGGATCGCGAGCAGCAGCTCAACGACCTTGAGCTCCAGCAGCAGGCGCTCCTCGGGCCCGCGCCCCTCAAATGATCCATCCATCCATCCTTAACTTCTACTAATAGTGTTCTTTGCCTGTCTAGTCAGACAAAATCAAACTTCTTGTTTTCATTAATTTCACCATTATGCTGCTCTGATGAGAAAA]
[+] EMBL AU085970 [GCGTCCCTGAGCAAGCGCGGCGGCGGCGGCGGCGAAGGGGAGGGCATCCTGGCGTCATGGATGGCGGCGCATGGGCGCGAGGCGGCGAGCAGGGCGAAGAAGGTGGTGCGGACGTGTGNGAAGGCGGCGTGGATCGCGGGGACCACCTTCCTGGTCCTCGTCGTCCCGCTCATCATCGAGATGGATCGCGAGCAGCAGCTCAACGACCTTGAGCTCCAGCAGCAGGCGCTCCTCGGGCCCGCGCCCCTCAAATGATCCATCCATCCATCCTTAACTTCTACTAATAGTGTTCTTTGCCTGTCTAGTCAGACAAAATCAAACTTCTTGTTTTCATTAATTTCACCATTATGCTGCTCTGATGAGAAAA]
consensusID : consensus_14458#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 229 fasta sequence
[TCAAATGATCCATCAAAACATCCTTAGCTTCTACTGCTGCCTACCTATGTCGTCGTCGTCGTCGTCTTAGTCTTTTTCTTCTTTTCTTCTTCTCTTAGTGTACACTGCTGCTACTAGTGTTTTTGCCTGTCTAGTCGGACAAATCAAAACTTTCTTGTTTTCATCATCGATCTATGCTATGCTGCTCTGGTGATATGTCGCTTTTTCAAAAAAAAAAAAAAAAAAAAAC]
[-] EMBL CF331539 [TCAAATGATCCATCAAAACATCCTTAGCTTCTACTGCTGCCTACCTATGTCGTCGTCGTCGTCGTCTTAGTCTTTTTCTTCTTTTCTTCTTCTCTTAGTGTACACTGCTGCTACTAGTGTTTTTGCCTGTCTAGTCGGACAAATCAAAACTTTCTTGTTTTCATCATCGATCTATGCTATGCTGCTCTGGTGATATGTCGCTTTTTCAAAAAAAAAAAAAAAAAAAAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14458#0 AAGGAAACCCTAAGCGAAGCGGAGGAGAGAAAGCAATGGCATCCCTGAGCAAGCGCGGCG 60
consensus_14458#3 ------------------------------------------------------------
consensus_14458#1 --------------------CTAAGCGAACCGGAGGAGAGAAACCAATGGCGTCCCTGAG 40
consensus_14458#2 ------------------------------------------------------------
consensus_14458#0 GCGGCGGCGGCGAGGGGGAGGGCATCCTGGCCTCCTTCTCCCGGTCTTCGGTGGCGGCGC 120
consensus_14458#3 ------------------------------------------------------------
consensus_14458#1 CAAGCGCGCGCGCGCGCGAGGGGGAGGACATCCTGCCCTCCTTCTCCCGGTCTTCGGTGC 100
consensus_14458#2 ------------------------------------------------------------
consensus_14458#0 ATGGGCGCGAGGCGGCGACCATGGCGAAGAAGCTGCTGCGGAGCACGGGGAAGGCGGCCT 180
consensus_14458#3 ------------------------------------------------------------
consensus_14458#1 GGCGCATGGGCCGAGCCGCGACCATGGCGAAGAAGCTGCTGCGGAGCACGGGGAAGCCGC 160
consensus_14458#2 --------------------------GCGTCCCTGAGCAAGCGCGGCGGCGGCGGCGGCG 34
consensus_14458#0 GGATCGCGGGGACCACCTTCCTCGTCCTCGTCGTCCCGCTCATCATCGAGATGGACCGCG 240
consensus_14458#3 ------------------------------------------------------------
consensus_14458#1 CTGGATCGCGGGGACCACCTTCCTCGTCCTCGTCGTCCCGCTCATCATCGAGATGGACCG 220
consensus_14458#2 AAGGGGAGGGCATCCTGGCGTCATGGATGGCGGCGCATGGGCGCGAGGCGGCGAGCAGGG 94
consensus_14458#0 AGCAGCAGCTCAACGACCTCGAGCTCCAGCAGCAGGCGCTCCTCGGCGGGCCGCCACCGC 300
consensus_14458#3 ------------------------------------------------------------
consensus_14458#1 CGACAGCAGCTCAACGACCTCGAGCTCCAGCAGCAGGCGCTCCTCGGCGGCCGCCACCGC 280
consensus_14458#2 CGAAGAAGGTGGTGCGGACGTGTGNGAAGGCGGCGTGGATCGCGGGGACCACCTTCCTGG 154
consensus_14458#0 CCGCGCCTCTCAAATGATCCATCCGTCC--ATCCTTAGCTTCTACTGCTGCCTACCTATG 358
consensus_14458#3 ---------TCAAATGATCCATCAAAAC--ATCCTTAGCTTCTACTGCTGCCTACCTATG 49
consensus_14458#1 CCGCGCCTCTCAAATGATCCATCCGTCC--ATCCTTAGCTTCTACTGCTGCCTACCTATG 338
consensus_14458#2 TCCTCGTCGTCCCGCTCATCATCGAGATGGATCGCGAGCAGCAGCT-CAACGACCTTGAG 213
** **** *** *** * ** * * * * *
consensus_14458#0 TCGTCGTCGTCGTCGT--CTTAGTCTTTTTCTTCTT---TTCTTCTTCTCTTAGTGTACA 413
consensus_14458#3 TCGTCGTCGTCGTCGT--CTTAGTCTTTTTCTTCTT---TTCTTCTTCTCTTAGTGTACA 104
consensus_14458#1 TCGTCGTCGTCGTCGT--CTTAGTCTTTTTCTTCTT---TTCTTCTTCTCTTAGTGTACA 393
consensus_14458#2 CTCCAGCAGCAGGCGCTCCTCGGGCCCGCGCCCCTCAAATGATCCATCCATCCATCCTTA 273
* * * ** ** * * * ** * * * ** * * *
consensus_14458#0 C-TGCTGCTACTAGTGTT-TTTGCCTGTCTAGTCGGACAAATCAAAACTTTCTTGTTTTC 471
consensus_14458#3 C-TGCTGCTACTAGTGTT-TTTGCCTGTCTAGTCGGACAAATCAAAACTTTCTTGTTTTC 162
consensus_14458#1 CCTGCTGCTACTAGTGTT-TTTGCCTGTCTAGTCGGACAATC--AAACTTTCTTGTTTTC 450
consensus_14458#2 ACTTCTACTAATAGTGTTCTTTGCCTGTCTAGTCAGACAAAATCAAACTT-CTTGTTTTC 332
* ** *** ******* *************** ***** ****** *********
consensus_14458#0 ATCATCGATCTATGCTATGCTGCTCTGATGAGATGTCGCTTTTTCTTTCCTGCTGCTACT 531
consensus_14458#3 ATCATCGATCTATGCTATGCTGCTCTGGTGATATGTCGCTTTTTCAAAAAAAAAAAAAAA 222
consensus_14458#1 ATCATCGATCAAAAAAAAAA---------------------------------------- 470
consensus_14458#2 ATTAATT-TCACCATTATGCTGCTCTGATGAGAAAA------------------------ 367
** * ** *
consensus_14458#0 TTATTTTCACGCTCATCTTATCATGCCGAATAAATCGATCGGTTNCTATAAAAAATTCTG 591
consensus_14458#3 AAAAAAC----------------------------------------------------- 229
consensus_14458#1 ------------------------------------------------------------
consensus_14458#2 ------------------------------------------------------------
consensus_14458#0 TGCAAAAAAAAAAA 605
consensus_14458#3 --------------
consensus_14458#1 --------------
consensus_14458#2 --------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||