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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14468#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 598 fasta sequence
[AGCCGCTTCTTCTCCAGACCTTGGAGCTCGCCGTCAGGGAGGGAGAGGAAGGACAGAGGTGAGCGGCGCGCCGCCGCGA-T-G-AGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAG-AAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCAT-GGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTACCT-GGAGTTATCTGTCAGCAAAAAAAAAAAAAAAAATTCTCTGTAAGAGAAGCTGTTCATCTGCGATTGTGATTGTGGAGATCTGAATTTTTTTGCTTCTTTCCAGTAATCCAGTGACAGTTTGCGTCTTGATTATTTTGCATTCTGTCGGAGTCTCTAAGATAGCTTGTTTTTGTCATTTTGAATTGGTATTCAGTTTCGGATACCATTCAGAGATTGCGAAAAATGCATTCAGATAGCTTGTCTTAAAAAAAA]
[+] EMBL AK103216 [AGCCGCTTCTTCTCCAGACCTTGGAGCTCGCCGTCAGGGAGGGAGAGGAAGGACAGAGGTGAGCGGCGCGCCGCCGCGA T G AGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAG AAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCAT GGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTACCT GGA ]
[+] EMBL C27867 [ TTCTTCTCCAGACCTTGGAGCTCGCCGTCA GGAGGGAGAGGAAGGACAGAGGTGAGCGGCG GNCCNGT T GNAGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAG AAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCATGGGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTA ]
[+] EMBL AU076118 [ CTTCTCCAGACCTTGGAGCTCGCCGTCAGGGAGGGAGAGGAAGGACAGAGGTGAGCGGCGCGCCG CGGGT TNG AGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAG AAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCAT GGGAGTAATTGATTGTACTTGACAGCAATGTTTCCATAATTCTATTACCTGGGAGTTATCTGTCAGCAAAAAAAAAA ]
[+] EMBL AU032365 [ TTCTCCAGACCTTGGAGCTCGCCGTCAGGGAGGGAGAGGAAGGACAGAGGTGAGCGGCGCGCCGCCGCGA T G AGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTNACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAG AAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCAT GGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTACCT GGAGTTATCTGTCAGCAAAAAAA ]
[+] EMBL AU063259 [ TCCAGACCTTGGAGCTCGCCGTCAGGGAGGGAGAGGAAGGACAGAGGTGAGCGGCGCGCCGCCG GANTNG AGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAG AAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCAT GGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTACCT GGAGTTATCTGTCA AAAAAA ]
[+] EMBL BE607480 [ TGGAGCTCGCCGTCAGGGAGGGAGAGGAAGGACAGAGGTGAGCGGCGCGCCGCCGCGA T G AGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAG AAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCAT GGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTACCT GGAGTTATC ]
[+] EMBL OSC25231 [ GGAGCTCGCCGTCAGGGAGGGAGAGGAAGGACAGAGGTGAGCGGCGCGCCG CGANN TNG AGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAG AAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCAT GGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTACCT GGAGTTATCTGTCAGCAAAAAA ]
[+] EMBL AU164818 [ AGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAG AAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCAT GGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTACCT GGAGTTATCTGTCAAAAAAAAAAAAAAAAAAAA ]
[+] EMBL CB000124 [ AGGCAGAGATCCAAGTAATCCCATAGGCGATCGCCTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAGAAAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCAT GGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTACCT GGAGTTATCTGTCAGCAATTCTCATTGTGTCTCTTCTCTGTAAGAGAAGCTGTTCATCTGCGATTGTGATTGTGGAGATCTGAATTTTTTTGCTTCTTTCCAGTAATCCAGTGACAGTTTGCGTCTTGATTATTTTGCATTCTGTCGGAGTCTCTAAGATAGCTTGTTTTTGTCATTTTGAATTGGTATTCAGTTTCGGATACCATTCAGAGATTGCGAAAAATGCATTCAGATAGCTTGTCTTAAAAAAAA]
[+] EMBL OSC252317 [ TCCAAGTAANCCCATAGNCGATCGACTGATGNAGGAGGAGAAANCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAG AAAAAAAACTAANCAATGTACTTCTCTTGATCTTTGTCAT GGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTACCT GGNGTTATCTGTCNNNAAAAAA ]
consensusID : consensus_14468#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 358 fasta sequence
[TCTCCAGACCTTGGAGCTCGCCGTCAGGGAGGGAGAGGAAGGACAGAGGTGAGCGGCGCGCCGCCGCGATGAGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAGAAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCATGGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTACCTGGAGTTAAAAAAAAAAAAAAAA]
[+] EMBL BE039663 [TCTCCAGACCTTGGAGCTCGCCGTCAGGGAGGGAGAGGAAGGACAGAGGTGAGCGGCGCGCCGCCGCGATGAGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAGAAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCATGGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTACCTGGAGTTAAAAAAAAAAAAAAAA]
[+] EMBL CA756772 [TCTCCAGACCTTGGAGCTCGCCGTCAGGGAGGGAGAGGAAGGACAGAGGTGAGCGGCGCGCCGCCGCGATGAGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAGAAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCATGGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTACCTGGAGTTAAAAAAAAAAA ]
consensusID : consensus_14468#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 346 fasta sequence
[TCTTCTCCAGACCTTGGAGCTCGCCGTCAGGGAGGGAGAGGAAGGACAGAGGTGAGCGGCGCGCCGCCGCGATGAGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAGAAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCATGGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTAAAAAAAAAAA]
[+] EMBL AU098299 [TCTTCTCCAGACCTTGGAGCTCGCCGTCAGGGAGGGAGAGGAAGGACAGAGGTGAGCGGCGCGCCGCCGCGATGAGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAGAAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCATGGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTAAAAAAAAAAA]
[+] EMBL AU160982 [TCTTCTCCAGACCTTGGAGCTCGCCNTCAGGGAGGGAGAGGAAGGACAGAGNTGAGCGGCGCGCCGCCGCGATGAGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGNTCAAGAGGAAGCNCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTNCCTTTAGTAAGAGAGAAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCATGGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTAAAAAAAAAAA]
[-] EMBL AU225247 [ GCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAGAAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCATGGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATagcggc ]
[-] EMBL AU225280 [ GAAGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGANTGATGGAGGAGGAGAAAGCGTNTTNGGCTCTCACTGNTGTCATCTCATCTATTTAAGTTNTTTAGNTTCCTCTAGTAAGAGAGAAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCATGGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATagcggc ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14468#0 AGCCGCTTCTTCTCCAGACCTTGGAGCTCGCCGTCAGGGAGGGAGAGGAAGGACAGAGGT 60
consensus_14468#1 ----------TCTCCAGACCTTGGAGCTCGCCGTCAGGGAGGGAGAGGAAGGACAGAGGT 50
consensus_14468#2 -------TCTTCTCCAGACCTTGGAGCTCGCCGTCAGGGAGGGAGAGGAAGGACAGAGGT 53
**************************************************
consensus_14468#0 GAGCGGCGCGCCGCCGCGATGAGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAG 120
consensus_14468#1 GAGCGGCGCGCCGCCGCGATGAGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAG 110
consensus_14468#2 GAGCGGCGCGCCGCCGCGATGAGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAG 113
************************************************************
consensus_14468#0 AGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGA 180
consensus_14468#1 AGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGA 170
consensus_14468#2 AGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGA 173
************************************************************
consensus_14468#0 GGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTT 240
consensus_14468#1 GGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTT 230
consensus_14468#2 GGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTT 233
************************************************************
consensus_14468#0 TCCTTTAGTAAGAGAGAAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCATGGGA 300
consensus_14468#1 TCCTTTAGTAAGAGAGAAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCATGGGA 290
consensus_14468#2 TCCTTTAGTAAGAGAGAAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCATGGGA 293
************************************************************
consensus_14468#0 GTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTACCTGGAGTTATCTGTCA 360
consensus_14468#1 GTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTACCTGGAGTTA------- 343
consensus_14468#2 GTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTAAAAAAAAAAA------- 346
******************************************* * *
consensus_14468#0 GCAAAAAAAAAAAAAAAAATTCTCTGTAAGAGAAGCTGTTCATCTGCGATTGTGATTGTG 420
consensus_14468#1 --AAAAAAAAAAAAAAA------------------------------------------- 358
consensus_14468#2 ------------------------------------------------------------
consensus_14468#0 GAGATCTGAATTTTTTTGCTTCTTTCCAGTAATCCAGTGACAGTTTGCGTCTTGATTATT 480
consensus_14468#1 ------------------------------------------------------------
consensus_14468#2 ------------------------------------------------------------
consensus_14468#0 TTGCATTCTGTCGGAGTCTCTAAGATAGCTTGTTTTTGTCATTTTGAATTGGTATTCAGT 540
consensus_14468#1 ------------------------------------------------------------
consensus_14468#2 ------------------------------------------------------------
consensus_14468#0 TTCGGATACCATTCAGAGATTGCGAAAAATGCATTCAGATAGCTTGTCTTAAAAAAAA 598
consensus_14468#1 ----------------------------------------------------------
consensus_14468#2 ----------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||