These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14469#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1903 fasta sequence [AGCTGACGGCGGACGTGCTCGCCTCTTCTCCGGCTCTCTCTCTCTTCTCCTCCTCCTCATCTCGGCAAAACCACCACCGCATTGCCGGTATATTTAGTTAAGCCGCGATAGAGGAGGGAGGGATAGCGTAGAGGGAGAGGGAACAGGGGAGGGTGGCGAGCTCCTGACCATCTCTCTCCGCCCTCTCCGTTTCGCCGCTCCTCGCCGGATCCATCTCCAAAAGAGGACGTCGGAGAAGATGATGGGCGGATTCCTCTCCCGGGTCCTCCTGTTGGCCTTTGGCTACGCCTATCCAGCATATGAGTGCTACAAGACTGTCGAACTGAATAAACCAGAGATTGAGCAGCTCATATTTTGGTGTCAGTATT-GGA-TTCTAGTAGCTCTGATGA-CGGTT-ATGGAGAGA-TTTGGA-GA-TTTTAC-AATAT-CAT-GGCTA-CCA-TTTTACTC--GGAAGC--AAAGCTGAT--GT-TCTTT-ATATACTTGTGGTACCCTAAGACAAAGGGAACTACCTACATTTATGGGACTTTCTTTAGGCCATATATTTCACAGCATGAGAATGAAATTGACCGTAATTTGCTTGAGTTGAGAGCTCGAGCCACCGATGTAGTTGTCCTTTATTTTCAAAAGGCTGCTACTGTAGGACAGAATACATTCTTT-GACGTTTTGAAGTATGTTGCTTCGCAATCACCATCTCAGAGGTCAAGTCAACAACCTTCTCAGGTACTAACATGCTTCTCTTCTTCAAAGCTGTTCACTGAACAAACTCATTTGCTTTTAACCACTGGAATTACCGAATTCACCATTTCTGTGCAGTCGCTAATGCTCAAGTTTTCCGGTGCTCTTCTAAAGCAATTCTATCCATGTTGTCTTGCTAGTTTGTTAGCTATATGTTTTTTTTTTATGCAAGACGCCTTTACTATTACTGCAGTACTGCCATCACATGTAGACTTGGTGTCTGCAGCTACTTTCTCTATAAACTATAGAAACAGGAATAATTTATAAGTCCATTTTACACAACCACCAAGGTCATAGGCCTTTGTACTGAGCATCGGCATGAGGTGTGAGCATATAAGCTTTCTAGAAAAGCCACCACTAATTTGCTGAGTCTGCAAGCTATATGTTGGTTTATAGTACCATGTTAAAGTTTCTTTATGACTGATTTTAGATATGCACATCCTAGATTTTTTTTTATTTTTATTTTTGCAATTACTAAGGGCCCGTTTGGTAGAGCTCCAACTCCTAAATTTAACTCTAGGAGTTGGGTCTGGAATAGAGTTGTGGAGCAGTCTAAACCCGGCTCCACCTCTCTAGTTCATTTTGTGAGAGCGTTGCACCCAGCTCTACTCCCATTTTAGGTGGAGTTGAAACTGTTTGGCTGAGCTTCAGCTCCAGGAGAGGTGGAGCTGGAGCTATGCCAAACATGCTCTTACACACATCCTAGTTAATGGTATGGTGACGTAAAAACTTCTTCCTGATTTCATCGAGCTATATATGTTCTAAAAAATATGTGTGCATATCTGGGATTACAATATACACCTTCTTGGGAACATCCATATCTAATCCTTGGTAATGCAACAATGTCTCTTTCTACTGCTACATAAACACATGTCCAATTTGACCGGGAGTATTAATATGACAATCCATTTGGCATTGTGTTGGCTTTGGAAATGAGTCAATTACTACTTCCTCCTTTTCTTTTCATACTCTGTACATTGTAATTAGTTGAAAGTGTGATTGTTTAGTAACTGAATTTAACGCCACCTGAAAAGACAAAATCTTATTGGAATGAAATATGTGTTTAAGCATCAAAGTTTTACAGCCTAACAGGTCAGCAACTGCAAACTGGCGACTAGATTTTCGCAAGGTTTCTAAAGGGTTCGGTAGCATTATCTTTCAACACTAGTTGGGCTGTAC] [+] EMBL AK068940 [AGCTGACGGCGGACGTGCTCGCCTCTTCTCCGGCTCTCTCTCTCTTCTCCTCCTCCTCATCTCGGCAAAACCACCACCGCATTGCCGGTATATTTAGTTAAGCCGCGATAGAGGAGGGAGGGATAGCGTAGAGGGAGAGGGAACAGGGGAGGGTGGCGAGCTCCTGACCATCTCTCTCCGCCCTCTCCGTTTCGCCGCTCCTCGCCGGATCCATCTCCAAAAGAGGACGTCGGAGAAGATGATGGGCGGATTCCTCTCCCGGGTCCTCCTGTTGGCCTTTGGCTACGCCTATCCAGCATATGAGTGCTACAAGACTGTCGAACTGAATAAACCAGAGATTGAGCAGCTCATATTTTGGTGTCAGTATT GGA TTCTAGTAGCTCTGATGA CGGTT ATGGAGAGA TTTGGA GA TTTTAC AATAT CAT GGCTA CCA TTTTACTC GGAAGC AAAGCTGAT GT TCTTT ATATACTTGTGGTACCCTAAGACAAAGGGAACTACCTACATTTATGGGACTTTCTTTAGGCCATATATTTCACAGCATGAGAATGAAATTGACCGTAATTTGCTTGAGTTGAGAGCTCGAGCCACCGATGTAGTTGTCCTTTATTTTCAAAAGGCTGCTACTGTAGGACAGAATACATTCTTT GACGTTTTGAAGTATGTTGCTTCGCAATCACCATCTCAGAGGTCAAGTCAACAACCTTCTCAGGTACTAACATGCTTCTCTTCTTCAAAGCTGTTCACTGAACAAACTCATTTGCTTTTAACCACTGGAATTACCGAATTCACCATTTCTGTGCAGTCGCTAATGCTCAAGTTTTCCGGTGCTCTTCTAAAGCAATTCTATCCATGTTGTCTTGCTAGTTTGTTAGCTATATGTTTTTTTTTTATGCAAGACGCCTTTACTATTACTGCAGTACTGCCATCACATGTAGACTTGGTGTCTGCAGCTACTTTCTCTATAAACTATAGAAACAGGAATAATTTATAAGTCCATTTTACACAACCACCAAGGTCATAGGCCTTTGTACTGAGCATCGGCATGAGGTGTGAGCATATAAGCTTTCTAGAAAAGCCACCACTAATTTGCTGAGTCTGCAAGCTATATGTTGGTTTATAGTACCATGTTAAAGTTTCTTTATGACTGATTTTAGATATGCACATCCTAGATTTTTTTTTATTTTTATTTTTGCAATTACTAAGGGCCCGTTTGGTAGAGCTCCAACTCCTAAATTTAACTCTAGGAGTTGGGTCTGGAATAGAGTTGTGGAGCAGTCTAAACCCGGCTCCACCTCTCTAGTTCATTTTGTGAGAGCGTTGCACCCAGCTCTACTCCCATTTTAGGTGGAGTTGAAACTGTTTGGCTGAGCTTCAGCTCCAGGAGAGGTGGAGCTGGAGCTATGCCAAACATGCTCTTACACACATCCTAGTTAATGGTATGGTGACGTAAAAACTTCTTCCTGATTTCATCGAGCTATATATGTTCTAAAAAATATGTGTGCATATCTGGGATTACAATATACACCTTCTTGGGAACATCCATATCTAATCCTTGGTAATGCAACAATGTCTCTTTCTACTGCTACATAAACACATGTCCAATTTGACCGGGAGTATTAATATGACAATCCATTTGGCATTGTGTTGGCTTTGGAAATGAGTCAATTACTACTTCCTCCTTTTCTTTTCATACTCTGTACATTGTAATTAGTTGAAAGTGTGATTGTTTAGTAACTGAATTTAACGCCACCTGAAAAGACAAAATCTTATTGGAATGAAATATGTGTTTAAGCATCAAAGTTTTACAGCCTAACAGGTCAGCAACTGCAAACTGGCGACTAGATTTTCGCAAGGTTTCTAAAGGGTTCGGTAGCATTATCTTTCAACACTAGTTGGGCTGTAC] [+] EMBL CB652375 [ TCTCCGGCTCTCTCTCTCTTCTCCTCCTCCTCATCTCCGCAAAACCACCACCGCATTGCCGGTATATTTAGTTAAGCCGCGATAGAGGAGGGAGGGATAGCGTAGAGGGAGAGGGAACAGGGGAGGGTGGCGAGCTCCTGACCATCTCTCTCCGCCCTCTCCGTTTCGCCGCTCCTCGCCGGATCCATCTCCAAAAGAGGACGTCGGAGAAGATGATGGGCGGATTCCTCTCCCGGGTCCTCCTGTTGGCCTTTGGCTACGCCTATCCAGCATATGAGTGCTACGAGACTGTCGAACTGAATAAACCAGAGATTGAGCAGCTCATATTTTGGTGTCAGTATT GGA TTCTAGTAGCTCTGATGA CGGTT ATGGAGAGA TTTGGA GA TTTTAC AATAT CAT GGCTA CCA TTTTACTC GGAAGC AAAGCTGAT GT TCTTT ATATACTTGTGGTACCCTAAGACAAAGGGAACTACCTACATTTATGGGACTTTCTTTAGGCCATATATTTCACAGCATGAGAATGAAATTGACCGTAATTTGCTTGAGTTGAGAGCTCGAGCCACCGATGTAGTTGTCCTTTATTTTCAAAAGGCTGCTACTGTAAGACAGAATACATTCTTTGGACGTTTTGA ] [+] EMBL OSS3878A [ tnCATCTCGGCAAAACCACCACCGCATTGCCGGTATATTTAGTTAAGCCGCGATAGAGGAGGGAGGGATAGCGTAGAGGGAGAGGGAACAGGGGAGGGTGGCGAGCTCCTGACCATCTCTCTCCGCCCTCTCCGTTTCGCCGCTCCTCGCCGGATCCATCTCCAAAAGAGGACGTCGGAGAAGATGATGGGCGGATTCCTCTCCCGGGTCCTCCTGTTGGCCTTTGGCTACG CTATCCA ] [+] EMBL OSS4366A [ ATCTCGGCAAAACCACCACCGCATTGCCGGTATATTTAGTTAAGCCGCGATAGAGGAGGGAGGGATAGCGTAGAGGGAGAGGGAACAGGGGAGGGTGGCGAGCTCCTGACCATCTCTCTCCGCCCTCTCCGTTTCGCCGCTCCTCGCCGGATCCATCTCCAAAAGAGGACGTCGGAGAAGATGATGGGCGGATTCCTCTCCCGGGTCCTCCTGTTGGCCTTTGGCTACG CTATCCAGCATATGAGTGCTACAAGACTGTCGAACTGAATAAACCAGAGATTGAGCAGCTCATATTTTGGTGTCAGTATT GGA TTCTAGTAGCTCTGATGA CGGTT ATGGAGAGA TTTGGA GA TTTTAC AATAT CAT GGCTA CCA TTTTACTC GGAAG AAAG TGGT TG TC TT ATATACTTGTGG A CCTAAG C AAGGG ACTACCTACA TTATG ] [+] EMBL OSS3372A [ ATCTCGGCAAAACCACCACCGCATTGCCGGTATATTTAGTTAAGCCGCGATAGAGGAGGGAGGGATAGCGTAGAGGGAGAGGGAACAGGGGAGGGTGGCGAGCTCCTGACCATCTCTCTCCGCCCTCTCCGTTTCGCCGCTCCTCGCCGGATCCATCTCCAAAAGAGGACGTCGGAGAAGATGATGGGCGGATTCCTCTCCCGGGTCCTCCTGTTGGCCTTTGGCTACGCCTATCCAGCATATGAGTGCTACAAGACTGTCGAACTGAATAAACCAGAGATTGAGCAGCTCATATTTTGGTGTCAGTATTGGGATTTCTAGTAGCTCTGATGACCGGTTAATGGAGAGATTTTGGAGGATTTTTACAAATATCCATNGGCTACCCATTTTTACTCGGGGAAGCAAAAAGNTGATTGGTCCCTTTNATAa ] [+] EMBL OSS4354A [ ATCTCGGCAAAACCACCACCGCATTGCCGGTATATTTAGTTAAGCCGCGATAGAGGAGGGAGGGATAGCGTAGAGGGAGAGGGAACAGGGGAGGGTGGCGAGCTCCTGACCATCTCTCTCCGCCCTCTCCGTTTCGCCGCTCCTCGCCGGATCCATCTCCAAAAGAGGACGTCGGAGAAGATGATGGGCGGATTCCTCTCCCGGGTCCTCCTGTTGGCCTTTGGCTACG CTATCCAGCATATGAGTGCTACAAG CTGTCGAACTTNATAAACCAGAGATTGAGCAGCTCATAT ] consensusID : consensus_14469#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1435 fasta sequence [GCGATAGAGGAGGGAGGGATAGCGTAGAGGGAGAGGGAACAGGGGAGGGTGGCGAGCTCCTGACCATCTCTCTCCGCCCTCTCCGTTTCGCCGCTCCTCGCCGGATCCATCTCCAAAAGAGGACGTCGGAGAAGATGATGGGCGGATTCCTCTCCCGGGTCCTCCTGTTGGCCTTTGGCTACGCCTATCCAGCATATGAGTGCTACAAGACTGTCGAACTGAATAAACCAGAGATTGAGCAGCTCATATTTTGGTGTCAGTATTGGATTCTAGTAGCTCTGATGACGGTTATGGAGAGATTTGGAGATTTTACAATATCATGGCTACCATTTTACTCGGAAGCAAAGCTGATGTTCTTTATATACTTGTGGTACCCTAAGACAAAGGGAACTACCTACATTTAT-GGGACTTTCTTTA-GGCCATATA-TTTCACAGCATGAGAATGAAATTGACCGTAATTTGCTTGAGTTGAGAGCTCGAGCCACCGATGTAGTTGTCCTTTATTTTCAAAAGGCTGCTACTGTAGGACAGAATACATTCTTTGGCGTTTTGAAGTATGTTGCTTCGCAATCACCATCTCAGAGGTCAAGTCAACAACCTTCTCAGGAGCCGCAACAACCAAAACAACAGCAGGCACCAGTACAGCAGCAGCCGACACAAAAACAAGCACCAACTGTTTTGCGCAGATCAGCATCTATTGCTGCTCGGCAAGCTGCAATGGCACAGCAGTCTCAGGATGCCAAGACGGTTCCATCTTCCCCCAAGATCAAGCGCCAAGCATCAACAAAAGCTGCACCTGTGGCATCAACAAAGTTGACCGGAGCTGCAGCTCCGTCAACACCAAAATCTGATGCCGACGCACCAAAGAAAAATGAGGCGGCGCCAGCTTCCTTGCAAGTGGCAACTCCAGCAACAAAGGCCGATGTACCAGCATCTGAACCTAGTGCTCCACTCCCTGAAGCCGAAGAAGCTGACAAGATGGCCATTGACGAGGCTGATGATGCCGTAGA-GGGCAC-AGAAGA-GGGTGAT-CCTGTTCCAGGTGAGACAGTAGAGGAGAGA-CCAATGGAGGAGACGATCCGTGTGACTCGCT-CCAAGC-TAAGG-A-GGCGTACTGC-TT-CTGAGGATCCTGCAGG-AAATTAAC-AG-CAATCCATTCTTTTTGTTGCATGTTGTGCTGTTCATTTTCTTTTTAAGTTTTAGATTGTCATGTTGTTTGGTGCATGTGGG-AAATGTGTTGGTCTAATTGATCGTTCTGTTGCCCAAGAGTTTGTCATCTCGTTTTCTGTGTTGCTAGCATGTTTGTGTGCTTGGAAGTTGTAAATAGCACCGTGCATGTATGTATATATCAATTGGTGGCATGGCGAGGAATGCCTGTATCTTGAAACATTAGACATTTCAATCAGGTCATTACATGAGCACTCTCTCTGTTGTCTGTTAAAAAA] [+] EMBL AK058393 [GCGATAGAGGAGGGAGGGATAGCGTAGAGGGAGAGGGAACAGGGGAGGGTGGCGAGCTCCTGACCATCTCTCTCCGCCCTCTCCGTTTCGCCGCTCCTCGCCGGATCCATCTCCAAAAGAGGACGTCGGAGAAGATGATGGGCGGATTCCTCTCCCGGGTCCTCCTGTTGGCCTTTGGCTACGCCTATCCAGCATATGAGTGCTACAAGACTGTCGAACTGAATAAACCAGAGATTGAGCAGCTCATATTTTGGTGTCAGTATTGGATTCTAGTAGCTCTGATGACGGTTATGGAGAGATTTGGAGATTTTACAATATCATGGCTACCATTTTACTCGGAAGCAAAGCTGATGTTCTTTATATACTTGTGGTACCCTAAGACAAAGGGAACTACCTACATTTAT GGGACTTTCTTTA GGCCATATA TTTCACAGCATGAGAATGAAATTGACCGTAATTTGCTTGAGTTGAGAGCTCGAGCCACCGATGTAGTTGTCCTTTATTTTCAAAAGGCTGCTACTGTAGGACAGAATACATTCTTTGGCGTTTTGAAGTATGTTGCTTCGCAATCACCATCTCAGAGGTCAAGTCAACAACCTTCTCAGGAGCCGCAACAACCAAAACAACAGCAGGCACCAGTACAGCAGCAGCCGACACAAAAACAAGCACCAACTGTTTTGCGCAGATCAGCATCTATTGCTGCTCGGCAAGCTGCAATGGCACAGCAGTCTCAGGATGCCAAGACGGTTCCATCTTCCCCCAAGATCAAGCGCCAAGCATCAACAAAAGCTGCACCTGTGGCATCAACAAAGTTGACCGGAGCTGCAGCTCCGTCAACACCAAAATCTGATGCCGACGCACCAAAGAAAAATGAGGCGGCGCCAGCTTCCTTGCAAGTGGCAACTCCAGCAACAAAGGCCGATGTACCAGCATCTGAACCTAGTGCTCCACTCCCTGAAGCCGAAGAAGCTGACAAGATGGCCATTGACGAGGCTGATGATGCCGTAGA GGGCAC AGAAGA GGGTGAT CCTGTTCCAGGTGAGACAGTAGAGGAGAGA CCAATGGAGGAGACGATCCGTGTGACTCGCT CCAAGC TAAGG A GGCGTACTGC TT CTGAGGATCCTGCAGG AAATTAAC AG CAATCCATTCTTTTTGTTGCATGTTGTGCTGTTCATTTTCTTTTTAAGTTTTAGATTGTCATGTTGTTTGGTGCATGTGGG AAATGTGTTGGTCTAATTGATCGTTCTGTTGCCCAAGAGTTTGTCATCTCGTTTTCTGTGTTGCTAGCATGTTTGTGTGCTTGGAAGTTGTAAATAGCACCGTGCATGTATGTATATATCAATTGGTGGCATGGCGAGGAATGCCTGTATCTTGAAACATTAGACATTTCAATCAGGTCA ] [+] EMBL C71951 [ AACAGGGGAGGGTGGCGAGCTCCTGACCATCTCTCTCCGCCCTCTCCGTTTCGCCGCTCCTCGCCGGATCCATCTCCAAAAGAGGACGTCGGAGAAGATGATGGGCGGATTCCTCTCCCGGGTCCTCCTGTTGGCCTTTGGCTACGCCTATCCAGCATATGAGTGCTACAAGACTGTCGAACTGAATAAACCAGAGATTGAGCAGCTCATATTTTGGTGTCAGTATTGGATTCTAGTAGCTCTGATGACGGTTATGGAGAGATTTGGAGATTTTACAATATCATGGCTACCATTTTACTCGGAAGCAAAGCTGATGTTCTTTATATACTTGTGGTACCCTAAGACAAAAGGGACTACCTACATTTATGGGGNCTTTCTTTAGGGCCATATATTTTCACA ] [-] EMBL CB652376 [ GACACAAAAACAAGCACCAACTGTTTTGCGCAGATCAGCATCTATTGCTGCTCGGCAAGCTGCAATGGCACAGCAGTCTCAGGATGCCAAGACGGTTCCATCTTCCCCCAAGATCAAGCGCCAAGCATCAACAAAAGCTGCACCTGTGGCATCAACAAAGTTGACCGGAGCTGCAGCTCCGTCAACACCAAAATCTGATGCCGACGCACCAAAGAAAAATGAGGCGGCGCCAGCTTCCTTGCAAGTGGCAACTCCAGCAACAAAGGCCGATGTACCAGCATCTGAACCTAGTGCTCCACTCCCTGAAGCCGAAGAAGCTGACAAGATGGCCATTGACGAGGCTGATGATGCCGTAGA GGGCAC AGAAGA GGGTGAT CCTGTTCCAGGTGAGACAGTAGAGGAGAGA CCAATGGAGGAGACGATCCGTGTGACTCGCT CCAAGC TAAGG A GGCGTACTGC TT CTGAGGATCCTGCAGG AAATTAAC AG CAATCCATTCTTTTTGTTGCATGTTGTGCTGTTCATTTTCTTTTTAAGTTTTAGATTGTCATGTTGTTTGGTGCATGTGGG AAATGTGTTGGTCTAATTGATCGTTCTGTTGCCCAAGAGTTTGTCATCTCGTTTTCTGTGTTGCTAGCATGTTTGTGTGCTTGGGAGTTGTAAATAGCACCGTGCATGTATGTATATATCAATTGGTGGCATGGCGAGGAATGCCTGTATCTTTAAAGGTTAGACATTTCAATCAGGT ] [+] EMBL AU101063 [ ACAGCAGTCTCAGGATGCCAAGACGNTTCCATCTTCCCCTAAGATCAAGCGCCAAGCATCAACAAAAGCTGCACCTGTGGCATCAACAAAGTTGACCGGAGCTGCAGCTCCGTCAACACCAAAATCTGATGCCGACGCACCAAAGAAAAATGAGGCGGCGCCAGCTTCCTTGCAAGTGGCAACTCCAGCAACAAAGGCCGATGTACCAGCATCTGAACCTAGTGCTCCACTCCCTGAAGCCGAAGAAGCTGACAAGATGGCCATTGACGAGGCTGATGATGCCGTAGA GGGCAC AGAAGA GGGTGAT CCTGTTCCAGGTGAGACAGTAGAGGAGAGA CCAATGGAGGAGACGATCCGTGTGACTCGCT CCAAGC TAAGG A GGCGTACTGC TT CTGAGGATCCTGCAGG AAATTAAC AG CAATCCATTCTTTTTGTTGCATGTTGTGCTGTTCATTTTCTTTTTAAGTTTTAGATTGTCATGTTGTTTGGTGCATGTGGG AAATGTGTTGGTCTAATTGATCGTTCTGTTGCCCAAGAGTTTGTCATCTCGTTTTCTGTGTTGCTAGCATGTTTGTGTGCTTGGAAGTTGTAAATAGCACCGTGCATGTATGTATATATCAATTGGTGGCATGGCGAGGAATGCCTGTATCTTGAAACATTAGACATTTCAATCAGGTCATTACATGAGCAaaaa ] [+] EMBL AU174325 [ TGATGCCGTAGA GGGCAC AGAAGA GGGTGAT CCTGTTCCAGGTGAGNCAGTAGAGGAGAGA CCAATGGAGGAGACGATCCGTGTGACTCGCT CCAAGC TAAGG A GGCGTACTGC TT CTGAGGATCCTGCAGG AAATTAAC AG CAATCCATTCTTTTTGTTGCATGTTGTGCTGTTCATTTTCTTTTTAAGTTTTAGATTGTCATGTTGTTTGGTGCATGTGGG AAATGTGTTGGTCTAATTGATCGTTCTGTTGCCCAAGAGTTTGTCATCTCGTTTTCTGTGTTGCTAGCATGTTTGTGTGCTTGGAAGTTGTAAATAGCACCGTGCATGTATGTATATATCAATTGGTGGCATGGCGAGGAATGCCTGTATCTTGAAACATTAGACATTTCAATCAGGTCATTACATGAGCACTCTCTCTGTTGTCTGTTAAAAAA] [+] EMBL AU223179 [ tCCGTAGAGGGGCACAAGAAGAGGGGTGATCCCTGTTCCAGGTGAGACAGTAGAGGAGAGACCCAATGGAGGAGCCGATCCGTGTGACTCGCT CCAAGC TAAGG AGGGCGTACTGC TT TTGAGGATCCTGCAGGAAAATTAAC AG CAATCCATTCTTTTTGTTGCATGTTGTGCTGTTCATTTTCTTTTTAAGTTTTAGATTGTCATGTTGTTTGGTGCATGTGGGAAAATGTGTTGGTCTAATTGATCGTTCTGTTGCCCAAGAGTTTGTCATCTCGTTTTCTGTGTTGCTAGCATGTTTGTGTGCTTGGAAGTTGTAAATAGCACCGTGCATGTATGTATATATCAATTGGTGGCATGGCGAGGAATGCCTGTATCTTGAAACATTAGACATTTCAATCAGGTCATTACATGAGCACTCTCTCTGTTGTCTGTTAAAAAA] [+] EMBL AU097283 [ GGAGACGATCCGTGTGACTCGNTCCCAAGCTTAAGGAA NGCGTACTGCGTTCCTGAGGATCCTGCAGG AAATTAACTAGCCAATCCATTC TTTTGTTGCATGTTGTGCTGTTCATTTNCTTTTTAAGTTTTAGATTGTCATGTTGTTTGGTGCATGTGGG AAATGTGTTGGTCTAATTGATCGTTCTGTTGCCCAAGAGTTTGTCATCTCGTTTTCTGTGTTGCTAGCATGTTTGTGTGCTTGGAAGTTGTAAATAGCACCGTGCATGTATGTATATATCAATTGGTGGCATGGCGAGGAATGCCTGTATCTTGAAACATTAGACATTTCAATCAGGTCATTACATGAGCACTCTCTCTGTTGTCTGTTAAAA ] [+] EMBL AU108429 [ GAGACGATCCGTGTGACTCGCT CCAAGC TAAGG A GGCGTACTGC TT CTGAGGATCCTGCAGG AAATTAAC AG CAATCCANTCTTTTTGTTGCATGTTGTGCTGTTCATTTTCTTTTTAAGTTTTAGATTGTCATGTTGTTTGGTGCATGTGGG AAATGTGTTGGTCTAATTGATCGTTCTGTTGCCCAAGAGTTTGTCATCTCGTTTTCTGTGTTGCTAGCATGTTTGTGTGCTTGGAAGTTGTAAATAGCNCCGTGCATGTATGTATATATCAATTGGTGGCATGGCGAGGAATGCCTGTATCTTGAAACATTAGACATTTCAATCAGGTCATTACATGAGCACTCTCTCTGTTGTCTGTTAAAAAA] consensusID : consensus_14469#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 663 fasta sequence [AATTCGGCACGAGCAAAAACAAGCACCAACTGTTTTGCGCAGATCAGCATCTATTGCTGCTCGGCAAGCTGCAATGGCACAGCAGTCTCAGGATGCCAAGACGGTTCCATCTTCCCCCAAGATCAAGCGCCAAGCATCAACAAAAGCTGNCACCTGTGGNCATCAACAAAGTTGAGCCGGAGNCTGCAGCTCNTNCAACACCAAAATCTGATGNCCGAACGCACCAAAGAAAAATGAGGCGGCGCCAGCTTNCCTTGNCAAGTGNCCAACTGCCAGCAACAAAGGNCCGATGTTACCAGCATTCTGGAACCTAGTGGCTCCACTTCCCTGGAAGCCCGAAGAAGCTGGACAAGATGGGCCATTGACGAGGCTGATGATGCCGTAGAGGGCACAGAAGAGGGTGATNCTGGTTTCCAGGTGAGACATGGGGGGGGGGGAAGANCCAATTGGGAAGGAGACGATTCCGTGGTGGACTTCGGCGGCCNAAGGTTNAAGGGAGGCGTACTGNNTTCTTGNAGGATCCCTGGCAGGGAAATTTTAACCAGGNATCCCATTCTTTTTNGGTTGNCATGGTTGGGGCNGTCAATTTTCCTTTTTAAAGTTTTAGAATNGCCANGTTGTTTGGGGCATTTNGGGAATTGGTTGGCCAAATGNCCGNCTGTT] [+] EMBL AI096158 [AATTCGGCACGAGCAAAAACAAGCACCAACTGTTTTGCGCAGATCAGCATCTATTGCTGCTCGGCAAGCTGCAATGGCACAGCAGTCTCAGGATGCCAAGACGGTTCCATCTTCCCCCAAGATCAAGCGCCAAGCATCAACAAAAGCTGNCACCTGTGGNCATCAACAAAGTTGAGCCGGAGNCTGCAGCTCNTNCAACACCAAAATCTGATGNCCGAACGCACCAAAGAAAAATGAGGCGGCGCCAGCTTNCCTTGNCAAGTGNCCAACTGCCAGCAACAAAGGNCCGATGTTACCAGCATTCTGGAACCTAGTGGCTCCACTTCCCTGGAAGCCCGAAGAAGCTGGACAAGATGGGCCATTGACGAGGCTGATGATGCCGTAGAGGGCACAGAAGAGGGTGATNCTGGTTTCCAGGTGAGACATGGGGGGGGGGGAAGANCCAATTGGGAAGGAGACGATTCCGTGGTGGACTTCGGCGGCCNAAGGTTNAAGGGAGGCGTACTGNNTTCTTGNAGGATCCCTGGCAGGGAAATTTTAACCAGGNATCCCATTCTTTTTNGGTTGNCATGGTTGGGGCNGTCAATTTTCCTTTTTAAAGTTTTAGAATNGCCANGTTGTTTGGGGCATTTNGGGAATTGGTTGGCCAAATGNCCGNCTGTT] consensusID : consensus_14469#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 328 fasta sequence [CCCTGAAGCCGAAGAAGCTGACAAGATGGCCATTGACGAGGCTGATGATNCCGTAGAGGGCACAGAAGAGGGTGANTCTGTTCCAGGTGAGACAGTAGAGGAGAGACCAATGGAGGAGACGATCCGTGTGACTCGCTCCAAGCTAAGGAGGCGTACTGCTTCTGAGGATCCTGCAGGAAATTAACAGCAATCCATTCTTTTTGTTGCATGTTGTGCTGTTCATTTTCTTTTTAAGTTTTAGATTGTCATGTTGTTTGGTGCNTGTGGGAAATGTGTTGGTNTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL C98822 [CCCTGAAGCCGAAGAAGCTGACAAGATGGCCATTGACGAGGCTGATGATNCCGTAGAGGGCACAGAAGAGGGTGANTCTGTTCCAGGTGAGACAGTAGAGGAGAGACCAATGGAGGAGACGATCCGTGTGACTCGCTCCAAGCTAAGGAGGCGTACTGCTTCTGAGGATCCTGCAGGAAATTAACAGCAATCCATTCTTTTTGTTGCATGTTGTGCTGTTCATTTTCTTTTTAAGTTTTAGATTGTCATGTTGTTTGGTGCNTGTGGGAAATGTGTTGGTNTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14469#2 ------------------------------------------------------------ consensus_14469#3 ------------------------------------------------------------ consensus_14469#1 ------------------------------------------------------------ consensus_14469#0 AGCTGACGGCGGACGTGCTCGCCTCTTCTCCGGCTCTCTCTCTCTTCTCCTCCTCCTCAT 60 consensus_14469#2 ------------------------------------------------------------ consensus_14469#3 ------------------------------------------------------------ consensus_14469#1 ------------------------------------------------------------ consensus_14469#0 CTCGGCAAAACCACCACCGCATTGCCGGTATATTTAGTTAAGCCGCGATAGAGGAGGGAG 120 consensus_14469#2 ------------------------------------------------------------ consensus_14469#3 ------------------------------------------------------------ consensus_14469#1 ------------------------------------------------------------ consensus_14469#0 GGATAGCGTAGAGGGAGAGGGAACAGGGGAGGGTGGCGAGCTCCTGACCATCTCTCTCCG 180 consensus_14469#2 ------------------------------------------------------------ consensus_14469#3 ------------------------------------------------------------ consensus_14469#1 ------------------------------------------------------------ consensus_14469#0 CCCTCTCCGTTTCGCCGCTCCTCGCCGGATCCATCTCCAAAAGAGGACGTCGGAGAAGAT 240 consensus_14469#2 ------------------------------------------------------------ consensus_14469#3 ------------------------------------------------------------ consensus_14469#1 ------------------------------------------------------------ consensus_14469#0 GATGGGCGGATTCCTCTCCCGGGTCCTCCTGTTGGCCTTTGGCTACGCCTATCCAGCATA 300 consensus_14469#2 ------------------------------------------------------------ consensus_14469#3 ------------------------------------------------------------ consensus_14469#1 ------------------------------------------------------------ consensus_14469#0 TGAGTGCTACAAGACTGTCGAACTGAATAAACCAGAGATTGAGCAGCTCATATTTTGGTG 360 consensus_14469#2 ------------------------------------------------------------ consensus_14469#3 ------------------------------------------------------------ consensus_14469#1 -------------------------GCGATAGAGGAGGGAGGGATAGCGTAGAGGGAGAG 35 consensus_14469#0 TCAGTATTGGATTCTAGTAGCTCTGATGACGGTTATGGAGAGATTTGGAGATTTTACAAT 420 consensus_14469#2 ------------------------------------------------------------ consensus_14469#3 ------------------------------------------------------------ consensus_14469#1 GGAACAGGGGAGGGTGGCGAGCTCCTGACCATCTCTCTCCGCCCTCTCCGTTTCGCCGCT 95 consensus_14469#0 ATCATGGCTACCATTTTACTCGGAAGCAAAGCTGATGTTCTTTATATACTTGTGGTACCC 480 consensus_14469#2 ------------------------------------------------------------ consensus_14469#3 ------------------------------------------------------------ consensus_14469#1 CCTCGCCGGATCCATCTCCAAAAGAGGACGTCGGAGAAGATGATGGGCGGATTCCTCTCC 155 consensus_14469#0 TAAGACAAAGGGAACTACCTACATTTATGGGACTTTCTTTAGGCCATATATTTCACAGCA 540 consensus_14469#2 ------------------------------------------------------------ consensus_14469#3 ------------------------------------------------------------ consensus_14469#1 CGGGTCCTCCTGTTGGCCTTTGGCTACGCCTATCCAGCATATGAGTGCTACAAGACTGTC 215 consensus_14469#0 TGAGAATGAAATTGACCGTAATTTGCTTGAGTTGAGAGCTCGAGCCACCGATGTAGTTGT 600 consensus_14469#2 ------------------------------------------------------------ consensus_14469#3 ------------------------------------------------------------ consensus_14469#1 GAACTGAATAAACCAGAGATTGAGCAGCTCATATTTTGGTGTCAGTATTGGATTCTAGTA 275 consensus_14469#0 CCTTTATTTTCAAAAGGCTGCTACTGTAGGACAGAATACATTCTTTGACGTTTTGAAGTA 660 consensus_14469#2 ------------------------------------------------------------ consensus_14469#3 ------------------------------------------------------------ consensus_14469#1 GCTCTGATGACGGTTATGGAGAGATTTGGAGATTTTACAATATCATGGCTACCATTTTAC 335 consensus_14469#0 TGTTGCTTCGCAATCACCATCTCAGAGGTCAAGTCAACAACCTTCTCAGGTACTAACATG 720 consensus_14469#2 ------------------------------------------------------------ consensus_14469#3 ------------------------------------------------------------ consensus_14469#1 TCGGAAGCAAAGCTGATGTTCTTTATATACTTGTGGTACCCTAAGACAAAGGGAACTACC 395 consensus_14469#0 CTTCTCTTCTTCAAAGCTGTTCACTGAACAAACTCATTTGCTTTTAACCACTGGAATTAC 780 consensus_14469#2 ------------------------------------------------------------ consensus_14469#3 ------------------------------------------------------------ consensus_14469#1 TACATTTATGGGACTTTCTTTAGGCCATATATTTCACAGCATGAGAATGAAATTGACCGT 455 consensus_14469#0 CGAATTCACCATTTCTGTGCAGTCGCTAATGCTCAAGTTTTCCGGTGCTCTTCTAAAGCA 840 consensus_14469#2 ------------------------------------------------------------ consensus_14469#3 ------------------------------------------------------------ consensus_14469#1 AATTTGCTTGAGTTGAGAGCTCGAGCCACCGATGTAGTTGTCCTTTATTTTCAAAAGGCT 515 consensus_14469#0 ATTCTATCCATGTTGTCTTGCTAGTTTGTTAGCTATATGTTTTTTTTTTATGCAAGACGC 900 consensus_14469#2 ------------------------------------------------------------ consensus_14469#3 ------------------------------------------------------------ consensus_14469#1 GCTACTGTAGGACAGAATACATTCTTTGGCGTTTTGAAGTATGTTGCTTCGCAATCACCA 575 consensus_14469#0 CTTTACTATTACTGCAGTACTGCCATCACATGTAGACTTGGTGTCTGCAGCTACTTTCTC 960 consensus_14469#2 ------------------------------------------------------------ consensus_14469#3 ------------------------------------------------------------ consensus_14469#1 TCTCAGAGGTCAAGTCAACAACCTTCTCAGGAGCCGCAACAACCAAAACAACAGCAGGCA 635 consensus_14469#0 TATAAACTATAGAAACAGGAATAATTTATAAGTCCATTTTACACAACCACCAAGGTCATA 1020 consensus_14469#2 --------AATTCGGCACGAGCAAAAACAAGCACCAACTGTTTTGCGCAGATCAGCATCT 52 consensus_14469#3 ------------------------------------------------------------ consensus_14469#1 CCAGTACAGCAGCAGCCGACACAAAAACAAGCACCAACTGTTTTGCGCAGATCAGCATCT 695 consensus_14469#0 GGCCTTTGTACTGAGCATCGGCATGAGGTGTGAGCATATAAGCTTTCTAGAAAAGCCACC 1080 consensus_14469#2 ATTGCTGCTCGGCAAGCTGCAATGGCACAGCAGTCTCAGGATGCCAAGACGGTTCCATCT 112 consensus_14469#3 ------------------------------------------------------------ consensus_14469#1 ATTGCTGCTCGGCAAGCTGCAATGGCACAGCAGTCTCAGGATGCCAAGACGGTTCCATCT 755 consensus_14469#0 ACTAATTTGCTG-AGTCTGCAAGCTATATGTTGGTTTATAGTACCATGTTAAAGTTTCTT 1139 consensus_14469#2 TCCCCCAAGATCAAGCGCCAAGCATCAACAAAAGCTGNCACCTGTGGNCATCAACAAAGT 172 consensus_14469#3 ------------------------------------------------------------ consensus_14469#1 TCCCCCAAGATCAAGCGCCAAGCATCAACAAAAGCTGC-ACCTGTGGC-ATCAACAAAGT 813 consensus_14469#0 TATGACTGATTTTAGATATGCACATCCTAGATTTTTTTTTATTTTTATTTTTGCAATTAC 1199 consensus_14469#2 TGAGCCGGAGNCTGCAGCTCNTNCAACACCAAAATCTGAT------GNCCGAACGCACCA 226 consensus_14469#3 ------------------------------------------------------------ consensus_14469#1 TGA--CCGGAGCTGCAGCTCCGTCAACACCAAAATCTGAT------GCC--GACGCACCA 863 consensus_14469#0 TAAGGGCCCGTTTGGTAGAGCTCCAACTCCTAAATTTAACTCTAGGAGTTGGGTCTGGAA 1259 consensus_14469#2 AAGAAAAATGAGGCGGCGCCAGCTTNCCTTGNCAAGTGNCCAACTGCCAGCAACAAAG-- 284 consensus_14469#3 ------------------------------------------------------------ consensus_14469#1 AAGAAAAATGAGGCGGCGCCAGCTTCCTT--GCAAGTGGCAACT--CCAGCAACAAAG-- 917 consensus_14469#0 TAGAGTTGTGGAGCAGTCTAAACCCGGCTCCACCTCTCTAGTTCATTTTGTGAGAGCGTT 1319 consensus_14469#2 --GNCCGATGTTACCAGCATTCT----------GGAACCTAGTGGCTCCACTTC----CC 328 consensus_14469#3 -----------------------------------------------------C----CC 3 consensus_14469#1 --GCC-GATGT-ACCAGCATCT------------GAACCTAGTG-CTCCACT-C----CC 955 consensus_14469#0 GCACCCAGCTCTACTCCCATTTTAGGTGGAGTTGAAACTGTTTGGCTGAGCTTCAGCTCC 1379 * ** consensus_14469#2 TGGAAGCCCGAAG---AAGCTGGACAAGATGGGCCATTGACGAGGCTGATGATGCCGTAG 385 consensus_14469#3 TGAAG--CCGAAG---AAGCTG-ACAAGATGG-CCATTGACGAGGCTGATGATNCCGTAG 56 consensus_14469#1 TGAAG--CCGAAG---AAGCTG-ACAAGATGG-CCATTGACGAGGCTGATGATGCCGTAG 1008 consensus_14469#0 AGGAGAGGTGGAGCTGGAGCTATGCCAAACATGCTCTTACACACATCCTAGTTAATGGTA 1439 * * * ** **** * * * * ** * * * * consensus_14469#2 AGGGCACAGAAGAGGGTGATNCTGGTTTC--CAGGTGAGACATGGGG-GGGGGGGAAGAN 442 consensus_14469#3 AGGGCACAGAAGAGGGTGANTCTG--TTC--CAGGTGAGACA------GTAGAGGAGAGA 106 consensus_14469#1 AGGGCACAGAAGAGGGTGATCCTG--TTC--CAGGTGAGACA------GTAGAGGAGAGA 1058 consensus_14469#0 TGGTGACGTAAAAACTTCTTCCTGATTTCATCGAGCTATATATGTTCTAAAAAATATGTG 1499 ** ** ** * * *** *** * * * * * * consensus_14469#2 CCAATTGGGAAGGAGACGATT----CCGTGGTGGACTTCGGCGGCCNAAGGTTNAAGGGA 498 consensus_14469#3 CCAAT---GGAGGAGACGAT-----CCGTGT--GACT----CGCTCCAAGCT---AAGGA 149 consensus_14469#1 CCAAT---GGAGGAGACGAT-----CCGTGT--GACT----CGCTCCAAGCT---AAGGA 1101 consensus_14469#0 TGCATATCTGGGATTACAATATACACCTTCTTGGGAACATCCATATCTAATCCTTGGTAA 1559 ** * ** ** ** * * * * * consensus_14469#2 GGCG--------------TACTGNNTTCTTGNAGGATCCCTG----GCAGGGAAATTTTA 540 consensus_14469#3 GGCG--------------TACTGCTTCT---GAGGATCCT------GCAGGAAA---TTA 183 consensus_14469#1 GGCG--------------TACTGCTTCT---GAGGATCCT------GCAGGAAA---TTA 1135 consensus_14469#0 TGCAACAATGTCTCTTTCTACTGCTACATAAACACATGTCCAATTTGACCGGGAGTATTA 1619 ** ***** ** * * * *** consensus_14469#2 ACCAGGNATCCCATTCTTT-TTNGGTTGNCATGGTTGGGGCNGTCAATT-TTCCTTTTTA 598 consensus_14469#3 AC--AGCAATCCATTCTTT-TTG---TTGCATGTT--GTGCTGTTCATT-TTCTTTTT-- 232 consensus_14469#1 AC--AGCAATCCATTCTTT-TTG---TTGCATGTT--GTGCTGTTCATT-TTCTTTTT-- 1184 consensus_14469#0 ATATGACAATCCATTTGGCATTGTGTTGGCTTTGGAAATG-AGTCAATTACTACTTCCTC 1678 * * ***** ** * * * * ** *** * ** consensus_14469#2 AAGTTTTAGAATNGCCANGTTGTTTGGGGCATTTNGGGAATTGGTTGGCCAAATGNCCGN 658 consensus_14469#3 AAGTTTTAGA-TTGTCATGTTGTTTGGTGCNTGTGGGAAATGTGTTGGTNTAAAAAAAAA 291 consensus_14469#1 AAGTTTTAGA-TTGTCATGTTGTTTGGTGCATGTGGGAAATGTGTTGGTCTAATTGATCG 1243 consensus_14469#0 CTTTTCTTTTCATACTCTGTACATTGTAATTAGTTGAAAGTGTGATTGTTTAGTAACTGA 1738 ** * ** *** * * * * * * * * consensus_14469#2 CTGTT------------------------------------------------------- 663 consensus_14469#3 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------------------- 328 consensus_14469#1 TTCTGTTGCCCAAGAGTTTGTCATCTCGTTTTCTGTGTTGCTAGCATGTTTGTGTGCTTG 1303 consensus_14469#0 ATTTAACGCCACCTGAAAAGACAAAATCTTATTGGAATGAAATATGTGTTTAAGCATCAA 1798 consensus_14469#2 ------------------------------------------------------------ consensus_14469#3 ------------------------------------------------------------ consensus_14469#1 GAAGTTGTAAATAGCACCGTGCATGTATGTATATATCAATTGGTGGCATGGCGAGGAATG 1363 consensus_14469#0 AGTTTTACAGCCTAACAGGTCAGCAACTGCAAACTGGCGACTAGATTTTCGCAAGGTTTC 1858 consensus_14469#2 ------------------------------------------------------------ consensus_14469#3 ------------------------------------------------------------ consensus_14469#1 CCTGTATCTTGAAACATTAGACATTTCAATCAGGTCATTACATGAGCACTCTCTCTGTTG 1423 consensus_14469#0 TAAAGGGTTCGGTAGCATTATCTTTCAACACTAGTTGGGCTGTAC--------------- 1903 consensus_14469#2 ------------ consensus_14469#3 ------------ consensus_14469#1 TCTGTTAAAAAA 1435 consensus_14469#0 ------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||