These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14470#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 2627 fasta sequence [CATTTCCGCCTCGCGAGGAAGAAGAGAGAGAGAGAGGGCAAAGGTCGTCGCCGCCGCCG-CCGCCGCC-TTCGCCGCCGTTTGGTCTCGTCGCCTTCCGGACCACCCGCACTAGCCCTTCTCCCTCCTCGCGCGCGCACGCGCCACACGGCCGACGACGACGAGCAGGTTTGGAGGGCCGACGCCGACGCGGCCGGCCTCCTTACGGGTCCCGTCGTCTCTGCGGCGGCTGCGCCGATATCCATCTCACGAGCAGAGCAGGAGTAGGGAGCAGGAGCAGGGGAGGGGGGCGCCGTCGTCGGGCTGAGTCCCGAACTTTAGCACAAGTTGTACTAGAGAAGATATACATCTCCTTGTGCTGTACTCTGTTTTGGTATGGAGGAAGATTCTGGTAGATCAATATCAACAACTGGTTTTCTTAGAAGAGGCTCTAGTGTCTCCTTAAAAGATCAAGGCAATGAGGAGAGGCCAAACAAGACAAAACTCAACCCAATGAATGCCAGGTGGGCTGACAGTAAGGAGAAGCCAAGATATTTACGTGAGCCATTTCGTTCATCAGGCACTAAGGCTGCATGTCCAAGCTCTTCAAAAGCTCCCGTCAGAAAATATTTCGAGGAAAAACAAGGACGGACATTTTTAGGAGAGGCAGATAATGCAGAAAGTAGTAGCAGAAGAACTGAGGCCAACCGTCTGCAGTGTAGCAAGAAAGCTGTTGTTGAGGAGGATGTGCATCCATATGGTCAGCAGGATGAGCCAGAAGATTTGTTGTCCACATCAACTACTGAAGATCAGCCTGCAGAACTTGATCCTGAACTATTAGATTCTTCTGTTTCTTCAGGGGTGTCTGCACATGCAATTGGTTCTGTAGTCAGAAATGCTGCTTTGAGATCTAAATCACGTCAGCAGAAGGGTAAAGAAGAATTGTGTCAGATTAGACCTCAAACTGCTTCTGCTTTTGTTAATCGGTCCACTATACCTCGAAATTCTACCAATGGTGTGAAATCATCAAATGCTGCTGGCCCTGGGGTACAGAGACGTACTCTAAAAAACCTTGGCTGCACATCAATATCTGATGTTTTGCCTTCTGGCTGTTCTTCAGCTAATTCTATTCATAATAAGAGGGCTGAGGTTATGAGAAACAGGGCATTTGACGGAGAGAGTTCTTCTAGACCAAGGGGCTTAAATGGACACTCTAGTTTAGGCCATTCACCTGCCATGTATTCTGGTATCACTGGTCCTAGAGTCAGAACTGCTGAACAATCAGCTTCTCAGCAAACACGGACTAGTAGCAGAAGTATTCAGGAGTCTGCAGATTCTTCAAGGATTAGGCGACCTTCTACTCAGCATGCCAGAGTAAGGGTGCCAAATGAAAGGGAGGATAGCGTGTTTGCTCTTCGTGAAACTCTTGCAAGGGATCGCCAACCAGAATGGGCTCATTTCTCCTTGGGTGAAGCTGCCCCACGGAGATCGATGAGGCCTTTTTCTATGGAATTACCACATGAGATATACTCATCTAGTCGTCAAGGCTCAAGTAATCAGACAGCAAGGAGCAGATCAAGTTACCGCCCTGACGAAAGCCCTCCACAAATGTTTCATGGTTTGCTGGTGGAGAGAGAGAACTACAGGCGTATAAACATGGAAGGCATCGCTGAGGTGTTGCTAGCATTGGACAGGATTGAACAAGATGATGAATTGACTTAT-GAGCAATTGCTGGTGCTAGAAACTAACTT-GTTTCTTAGCGGCCTTGGCCTGCA-TGACCAGCACA-GAGA-TATGAGAATGGA-TATTGA-CAACATGTCTTATGAGGAACTATTAGCACTAGAGGAGCGAATCGGTTCTGTCAGCACTGCCCTATCTGATGAGCAGCTTGTGAAGTGTCTCAAGCGAAATGTGTATAAGTTA-CCAAATTCAGATCTTGAAGCGAACAGAGCTGTACTAGATGACGCCAAGTGCAGCATATGTCAGGAGGAATACATTGAGGGCGAAGAAGTTGGTAGGATGCAGTGTGAGCATCAATACCATGTGTCCTGCATTCATGAATGGCTTAGACAGAAGAACTGGTGTCCAATATGCAAAACTTCAGCAATACCTTCAGAGATGGACAAGGGGGGCACATGAATATAGGTTGTTCAAGCTCGTAAATATTATAAATTTATAATGAAACAGTGTTAGACATGCTAGACACTGACTCAATTCACTCAAATTTGTGAATATGA-TAGATTGCTTTCTTCTTGGAAACTCCTGTACATTTTTGTTTCGGTATCCGGTCCAAATTACACATCACCTGCCATCAGATAATGAGACCAGAGGACCCTTGGGAAAAATTCCTGCTTGATTGGACTTATGGTTACAATAATTAAAATTCTGCTCGATTGGAGTGTTAGTAAAAATTCATTCACTTTGG-CCCCAACCACATATTAGATTTGCAATTACTGATTTGGTGTCCAGTGTTTCAGGTGCTTTGTAGCCTGGTTTGAGTTTGGAGTGTTCGTAAGGTGTTATCTGTTGGGTTGGTACTCGGATGTGTACTCTTCCTTGGGTATCAATGTAATAAGGCAAAGCTTTTGCCTTTGTCTCAAAAAAAGGATTTGCAATTT-CCTTGAT-CTTAATGAAATTTGGTCAGCACCCTTTCG] [+] EMBL AK066069 [CATTTCCGCCTCGCGAGGAAGAAGAGAGAGAGAGAGGGCAAAGGTCGTCGCCGCCGCCG CCGCCGCC TTCGCCGCCGTTTGGTCTCGTCGCCTTCCGGACCACCCGCACTAGCCCTTCTCCCTCCTCGCGCGCGCACGCGCCACACGGCCGACGACGACGAGCAGGTTTGGAGGGCCGACGCCGACGCGGCCGGCCTCCTTACGGGTCCCGTCGTCTCTGCGGCGGCTGCGCCGATATCCATCTCACGAGCAGAGCAGGAGTAGGGAGCAGGAGCAGGGGAGGGGGGCGCCGTCGTCGGGCTTAGTCCCGAACTTTAGCACAAGTTGTACTAGAGAAGATATACATCTCCTTGTGCTGTACTCTGTTTTGGTATGGAGGAAGATTCTGGTAGATCAATATCAACAACTGGTTTTCTTAGAAGAGGCTCTAGTGTCTCCTTAAAAGATCAAGGCAATGAGGAGAGGCCAAACAAGACAAAACTCAACCCAATGAATGCCAGGTGGGCTGACAGTAAGGAGAAGCCAAGATATTTACGTGAGCCATTTCGTTCATCAGGCACTAAGGCTGCATGTCCAAGCTCTTCAAAAGCTCCCGTCAGAAAATATTTCGAGGAAAAACAAGGACGGACATTTTTAGGAGAGGCAGATAATGCAGAAAGTAGTAGCAGAAGAACTGAGGCCAACCGTCTGCAGTGTAGCAAGAAAGCTGTTGTTGAGGAGGATGTGCATCCATATGGTCAGCAGGATGAGCCAGAAGATTTGTTGTCCACATCAACTACTGAAGATCAGCCTGCAGAACTTGATCCTGAACTATTAGATTCTTCTGTTTCTTCAGGGGTGTCTGCACATGCAATTGGTTCTGTAGTCAGAAATGCTGCTTTGAGATCTAAATCACGTCAGCAGAAGGGTAAAGAAGAATTGTGTCAGATTAGACCTCAAACTGCTTCTGCTTTTGTTAATCGGTCCACTATACCTCGAAATTCTACCAATGGTGTGAAATCATCAAATGCTGCTGGCCCTGGGGTACAGAGACGTACTCTAAAAAACCTTGGCTGCACATCAATATCTGATGTTTTGCCTTCTGGCTGTTCTTCAGCTAATTCTATTCATAATAAGAGGGCTGAGGTTATGAGAAACAGGGCATTTGACGGAGAGAGTTCTTCTAGACCAAGGGGCTTAAATGGACACTCTAGTTTAGGCCATTCACCTGCCATGTATTCTGGTATCACTGGTCCTAGAGTCAGAACTGCTGAACAATCAGCTTCTCAGCAAACACGGACTAGTAGCAGAAGTATTCAGGAGTCTGCAGATTCTTCAAGGATTAGGCGACCTTCTACTCAGCATGCCAGAGTAAGGGTGCCAAATGAAAGGGAGGATAGCGTGTTTGCTCTTCGTGAAACTCTTGCAAGGGATCGCCAACCAGAATGGGCTCATTTCTCCTTGGGTGAAGCTGCCCCACGGAGATCGATGAGGCCTTTTTCTATGGAATTACCACATGAGATATACTCATCTAGTCGTCAAGGCTCAAGTAATCAGACAGCAAGGAGCAGATCAAGTTACCGCCCTGACGAAAGCCCTCCACAAATGTTTCATGGTTTGCTGGTGGAGAGAGAGAACTACAGGCGTATAAACATGGAAGGCATCGCTGAGGTGTTGCTAGCATTGGACAGGATTGAACAAGATGATGAATTGACTTAT GAGCAATTGCTGGTGCTAGAAACTAACTT GTTTCTTAGCGGCCTTGGCCTGCA TGACCAGCACA GAGA TATGAGAATGGA TATTGA CAACATGTCTTATGAGGAACTATTAGCACTAGAGGAGCGAATCGGTTCTGTCAGCACTGCCCTATCTGATGAGCAGCTTGTGAAGTGTCTCAAGCGAAATGTGTATAAGTTA CCAAATTCAGATCTTGAAGCGAACAGAGCTGTACTAGATGACGCCAAGTGCAGCATATGTCAGGAGGAATACATTGAGGGCGAAGAAGTTGGTAGGATGCAGTGTGAGCATCAATACCATGTGTCCTGCATTCATGAATGGCTTAGACAGAAGAACTGGTGTCCAATATGCAAAACTTCAGCAATACCTTCAGAGATGGACAAGGGGGGCACATGAATATAGGTTGTTCAAGCTCGTAAATATTATAAATTTATAATGAAACAGTGTTAGACATGCTAGACACTGACTCAATTCACTCAAATTTGTGAATATGA TGGATTGCTTTCTTCTTGGAAACTCCTGTACATTTTTGTTTCGGTATCCGGTCCAAATTACACATCACCTGCCATCAGATAATGAGACCAGAGGACCCTTGGGAAAAATTCCTGCTTGATTGGACTTATGGTTACAATAATTAAAATTCTGCTCGATTGGAGTGTTAGTAAAAATTCATTCACTTTGG CCCCAACCACATATTAGATTTGCAATTACTGATTTGGTGTCCAGTGTTTCAGGTGCTTTGTAGCCTGGTTTGAGTTTGGAGTGTTCGTAAGGTGTTATCTGTTGGGTTGGTACTCGGATGTGTACTCTTCCTTGGGTATCAATGTAATAAGGCAAAGCTTTTGCCTTTGTCTCAAAAAAAGGATTTGCAATTT CCTTGAT CTTAATGAAATTTGGTCAGCACCCTTTCG] [+] EMBL CB673403 [ GAGAGAGCCATAGGGCAAAGGTCGTCGCCGCCGCCGACCGCCGCCATTCGCCGCCGTTTGGTCTCGTCGCCTTCCGGACCACCCGCACTAGCCCTTCTCCCTCCTCGCGCGCGCACGCGCCACACGGGCGACGACGACGAGCAGGTTTGGAGGGCCGACGCCGACGCGGCCGGCCTCCTTACGGGTCCCGGCGTCTCTGCGGCGGCTGCGCCGATATCCATCTCACGAGCAGAGCAGGAGTAGGGAGCAGGAGCAGGGGAGGGGGGCGCCGTCTTCGGGCTGAGTCCCGAACTTTAACACAAGTTGTACTAGAGAAGATATACATCTCCTTGTGCTGTACTCGGTTTTGGTATGGAGGAAGATTCTGGCAGATCAAGATCAACAACTGGTTTTCTTAGAAGAGGCTCTAGTGTCTCCTTAAAAGATCAAGGCAATGAGGAGAGGCCAGACAAGACAAAACTCAACCCAATGAATGCCAGGTGGGCTGACAGTAAGGAGAAGCCAAGATATTTACGTGAGGCATTTCGTTCATCACGCACTAAGGCTGCATGTCCAAGCTCTTCAAAAGCTCCCGTCAGAAAATATTTCG ] [+] EMBL CB649504 [ GAGAGAGAGAGGGCAAAGGTCGTCGCCGCCGCCG CCGCCGCC TTCGCCGCCGTTTGGTCTCGTCGCCTTCCGGACCACCCGCACTAGCCCTTCTCCCTCCTCGCGCGCGCACGCGCCACACGGCCGACGACGACGAGCAGGTTTGGAGGGCCGACGCCGACGCGGCCGGCCTCCTTACGGGTCCCGTCGTCTCTGCGGCGGCTGCGCCGATATCCATCTCACGAGCAGAGCAGGAGTAGGGAGCAGGAGCAGGGGAGGGGGGCGCCGTCGTCGGGCTGAGTCCCGAACTTTAGCACAAGTTGTACTAGAGAAGATATACATCTCCTTGTGCTGTACTCTGTTTTGGTATGGAGGAAGATTCTGGTAGATCAATATCAACAACTGGTTTTCTTAGAAGAGGCTCTAGTGTCTCCTTAAAAGATCAAGGCAATGAGGAGAGGCCAAACAAGACAAAACTCAACCCAATGAATGCCAGGTGGGCTGACAGTAAGGAGAAGCCAAGATATTTACGTGAGCCATTTCGTTCATCAGGCACTAAGGCTGCATGTCCAAGCTCTTCAAAAGCTCCCGTCAGAAAATATTTCGAGGAAAAACAAGGACGGACATTTTTAGGAGAGGCAGATAATGCAGAAAGTAGTAGCAGAAGAACTGAGGCCAACCGTCTGCAGTGTAGCAAGAAAGCTGTTGTTGAGGAGGATGTGCATCCATATGGTCAGCAGGATGAGCCAGAAGATTTGTTGTCCACATCAACTACTGAAGATCAGCCTGCAGAACTTGATCCTNGACTATTAGATTCTTCTGTTTCTTCAGGGGTGT ] [+] EMBL CB637687 [ GGCAAAGGTCGTCGCCGCCGCCG CCGCCGCC TTCGCCGCCGTTTGGTCTCGTCGCCTTCCGGACCACCCGCACTAGCCCTTCTCCCTCCTCGCGCGCGCACGCGCCACACGGCCGACGACGACGAGCAGGTTTGGAGGGCCGACGCCGACGCGGGCGGCCTCCTTACGGGTTTTTTTGTCTCTGCGGCGGCTGCGCCGATATCCATCTCACGAGCAGAGCAGGAGTAGGGAGCAGGAGCAG ] [+] EMBL CF307060 [ ACGAGCAGAGCAGGAGTAGGGAGCAGGAGCAGGGGAGGGGGGCGCCGTCGTCGGGCTGAGTCCCGAACTTTAGCACAAGTTGTACTAGAGAAGATATACATCTCCTTGTGCTGTACTCTGTTTTGGTATGGAGGAAGATTCTGGTAGATCAATATCAACAACTGGTTTTCTTAGAAGAGGCTCTAGTGTCTCCTTAAAAGATCAAGGCAATGAGGAGAGGCCAAACAAGACAAAACTCAACCCAATGAATGCCAGGTGGGCTGACAGTAAGGAGAAGCCAAGATATTTACGTGAGCCATTTCGTTCATCAGGCACTAAGGCTGCATGTCCAAGCTCTTCAAAAGCTCCCGTCAGAAAATATTTCGAGGAAAAACAAGGACGGACATTTTTAGGAGAGGCAGATAATGCAGAAAGTAGTAGCAGAAGAACTGAGGCCAACCGTCTGCAGTGTAGCAAGAAAGCTGTTGTTGAGGAGGATGTGCATCCATATGGTCAGCAGGATGAGCCAGAAGATTTGTTGTCCACATCAACTACTGAAGATCAGCCTGCAGAACTTGATCCTGAACTATTAGATTCTTCTGTTTCTTCAGGGGTGTCTGCACATGCAATTGG ] [+] EMBL CF303386 [ CAGAGCAGGAGTAGGGAGCAGGAGCAGGGGAGGGGGGCGCCGTCGTCGGGCTGAGTCCCGAACTTTAGCACAAGTTGTACTAGAGAAGATATACATCTCCTTGTGCTGTACTCTGTTTTGGTATGGAGGAAGATTCTGGTTTATCAATATCAACAACTGGTTTTCTTAGAAGAGGCTCTAGTGTCTCCTTAAAAGATCAAGGCAATGAGGAGAGGCCAAACAAGACAAAACTCAACCCAATGAATGCCAGGTGGGCTGACAGTAAGGAGAAGCCAAGATATTTACGTGAGCCATTTCGTTCATCAGGCACTAAGGCTGCATGTCCAAGCTCTTCAAAAGCTCCCGTCAGAAAATATTTCGAGGAAAAACAAGGACGGACATTTTTAGGAGAGGCAGATAATGCAGAAAGTAGTAGCAGAAGAACTGAGGCCAACCGTCTGCAGTGTAGCAAGAAAGCTGTTGTTGAGGAGGATGTGCATCCATATGGTCAGCAGGATGAGCCAGAAGATTTGTTGTCCACATCAACTACTGAAGATCAGCCTGCAGAACTTG ] [+] EMBL CF303821 [ CAGAGCAGGAGTAGGGAGCAGGAGCAGGGGAGGGGGGCGCCGTCGTCGGGCTGAGTCCCGAACTTTAGCACAAGTTGTACTAGAGAAGATATACATCTCCTTGTGCTGTACTCTGTTTTGGTATGGAGGAAGATTCTGGTAGATCAATATCAACAACTGGTTTTCTTAGAAGAGGCTCTAGTGTCTCCTTAAAAGATCAAGGCAATGAGGAGAGGCCAAACAAGACAAAACTCAACCCAATGAATGCCAGGTGGGCTGACAGTAAGGAGAAGCCAAGATATTTACGTGAGCCATTTCGTTCATCAGGCACTAAGGCTGCATGTCCAAGCTCTTCAAAAGCTCCCGTCAGAAAATATTTCGAGGAAAAACAAGGACGGACATTTTTAGGAGAGGCAGATAATGCAGAAAGTAGTAGCAGAAGAACTGAGGCCAACCGTCTGCAGTGTAGCAAGAAAGCTGTTGTTGAGGAGGATGTGCATCCATATGGTCAGCAGGATGAGCCAGAAGATTTGTTGTCCACATCAACTACTGAAGATCAGCCTGCAGAACTTGA ] [+] EMBL CF303757 [ CTGAGTCCCGAACTTTAGCACAAGTTGTACTAGAGAAGATATACATCTCCTTGTGCTGTACTCTGTTTTGGTATGGAGGAAGATTCTGGTAGATCAATATCAACAACTGGTTTTCTTAGAAGAGGCTCTAGTGTCTCCTTAAAAGATCAAGGCAATGAGGAGAGGCCAAACAAGACAAAACTCAACCCAATGAATGCCAGGTGGGCTGACAGTAAGGAGAAGCCAAGATATTTACGTGAGCCATTTCGTTCATCAGGCACTAAGGCTGCATGTCCAAGCTCTTCAAAAGCTCCCGTCAGAAAATATTTCGAGGAAAAACAAGGACGGACATTTTTAGGAGAGGCAGATAATGCAGAAAGTAGTAGCAGAAGAACTGAGGCCAACCGTCTGCAGTGTAGCAAGAAAGCTGTTGTTGAGGAGGATGTGCATCCATATGGTCAGCAGGATGAGCCAGAAGATTTGTTGTCCACATCAACTACTGAAGATCAGCCTGCAGAACTTGATCCTGAACTATTAGATTCTTCTGTTTCTTCAGGGGTGTCTGCACATGCAATTGGTTCTGTAGTCAGAAATGCTGCTTTGAGATCTAAA ] [+] EMBL C99216 [ AATTGACTTATGGAGCAATTGCTGGTGCTAGAAACTAACTTGGTTTCTTAGCGCCCTTGGCCTGCA TGACCAGCACA GAGA TATGCG ATGGATTATTGACCAACATGTCTTATGAGGAACTATTAGCACTAGAGGAGCGAATCGGTTCTGTCAGCACTGCCCTATCTGATGAGCAGCTTGTGAAGTGTCTCAAGCGAAATGTGTATAAGTTA CCAAATTCAGATCTTGAAGCGAACAGAGCTGTACTAGATGACGCCAAGTGCAGCATATGTCAGGAGGAATACATTGAGGGCGAAGAAGTTGGTAGGATGCAGTGTGAGCATCAATACCATGTGTCCTGCATTCATGAATGGCTTAGACAGAAGAACTGGTGTCCAATATGCAAAACTTCAGCAATACCTTCAGAGATGGACAAGGGGGGCACATGAATATAGGTTGTTCAAGCTCGTAAATATTATAAATTTATAATGAAACAGTGTTAGACATGCTAGACACTGACTCAATTCACTCAAATTTGTGAATATGA TAGATTGCTTTCTaaaaaaaa ] [+] EMBL CF308057 [ ATTGCTGGTGCTAGAAACTAACTT GTTTCTTAGCGGCCTTGGCCTGCA TGACCAGCACA GAGA TATGAGAATGGA TATTGA CAACATGTCTTATGAGGAACTATTAGCACTAGAGGAGCGAATCGGTTCTGTCAGCACTGCCCTATCTGATGAGCAGCTTGTGAAGTGTCTCAAGCGAAATGTGTATAAGTTA CCAAATTCAGATCTTGAAGCGAACAGAGCTGTACTAGATGACGCCAAGTGCAGCATATGTCAGGAGGAATACATTGAGGGCGAAGAAGTTGGTAGGATGCAGTGTGAGCATCAATACCATGTGTCCTGCATTCATGAATGGCTTAGACAGAAGAACTGGTGTCCAATATGCAAAACTTCAGCAATATCTTCAGAGATGGACAAGGGGGGCACATGAATTAAGGNTGTTCAAGCTCGTAAATATTATAAATTTATAATGAAACAGTGTTAGACATGCTAGACACTGACTCAATTCACTCAAATTTGTGAATATGATTAGATTGCTTTCTTCTT ] [+] EMBL BI807517 [ GGCCTTGGCCTGCATTGACCAGCACATGAGATTATGAGAATGGA TATTGA CAACATGTCTTATGAGGAACTATTAGCACTAGAGGAGCGAATCGGTTCTGTCAGC CTGCCCTATCTGATGAGCAGCTTGTGAAGTGTCTCAAGCGAAATGTGTATAAGTTACCCAAATTCAGATCTTGAAGCGAACAGAGCTGTACTAGATGACGCCAAGTGCAGCATATGTCAGGAGGAATACATTGAGGGCGAAGAAGTTGGTAGGATGCAGTGTGAGCATC ATACCATGTGTCCTGCATTCATGAATGGCTTAGACAGAAGAACTGGTGTCCCATATGCAAAACTTCAGCAATACCTTCAGAGATGGACAAGGGGGGCACATGAATATAGGTTGTTCAAGCTCGTAAATATTATAAATTTATAATGAAACAGTGTTAGACATGCTAGACACTGACTCAATTCACTCCAATTTGTGAATATGA TATATTGCTTTCTTCTTGAAAAaaaaaa ] [-] EMBL BU667004 [ acCCATGTGTCCTGCATTCATGAATGGCTTAGACAGAAGAACTGGTGTCCCATATGCCAAACTTCAGCAATACCTTCAGAGATGGACAAGGGGGGCACATGAATATAGGTTGTTCAAGCTCGTAAATATTATAAATTTATAATGAAACAGTGTTAGACATGCTAGACACTGACTCAATTCACTCAAAT ] [-] EMBL CB637688 [ TGCAAAACTTCAGCAATACCTTCAGAGATGGACAAGGGGGGCACATGAATATAGGTTGTTCAAGCTCGTAAATATTATAAATTTATAATGAAACAGTGTTAGACATGCTAGACACTGACTCAATTCACTCAAATTTGTGAATATGA TAGATTGCTTTCTTCTTGGAAACTCCTGTACATTTTTGTTTCGGTATCCGGTCCAAATTACACATCACCTGCCATCAGATAATGAGACCAGAGGACCCTTGGGAAAAATTCCTGCTTGATTGGACTTATGGTTACAATAATTAAAATTCTGCTCGATTGGAGTGTTAGTAAAAATTCATTCACTTTGGCCCCCAACCACATATTAGATTTGCAATTACTGATTTGGTGTCCAGTGTTTCAGGTGCTTTGTAGCCTGGTTTGAGTTTGGAGTGTTCGTAAGGTGTTATCTGTTGGGTTGGTACTCGGATGTGTACTCTTCCTTGGGTATCAATGTAATAAGGCAAAGCTTTTGCCTTTGTCTCAAAAAAAGGATTTGCAATTTCCCTTGATCCTTAATGAAATTTGGTCAGCACCCTTaac] consensusID : consensus_14470#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 759 fasta sequence [GGAGATCGATGAGGCCTTTTTCTATGGAATTACCACATGAGATATACTCATCTAGTCGTCAAGGCTCAAGTAATCAGACAGCAAGGAGCAGATCAAGTTACCGCCCTGACGAAAGCCCTCCACAAATGTTTCATGGTTTGCTGGTGGAGAGAGAGAACTACAGGCGTATAAACATGGAAGGCATCGCTGAGGTGTTGCTAGCATTGGACAGGATTGAACAAGATGATGAATTGACTTATGAGCAATTGCTGGTGCTAGAAACTAACTTGTTTCTTAGCGGCCTTGGCCTGCATGACCAGCACAGAGATATGAGAATGGATATTGACAACATGTCTTATGAGGAACTATTAGCACTAGAGGAGCGAATCGGTTCTGTCAGCACTGCCCTATCTGATGAGCAGCTTGTGAAGTGTCTCAAGCGAAATGTGTATAAGTTACCAAATTCAGATCTTGAAGCGAACAGAGCTGTACTAGATGACGCCAAGTGCAGCATATGTCAGGAGGAATACATTGAGGGCGAAGAAGTTGGTAGGATGCAGTGTGAGCATCAATACCATGTGTCCTGCATTCATGAATGGCTTAGACAGAAGAACTGGTGTCCAATATGCAAAACTTCAGCAATACCTTCAGAGATGGACAAGGGGGGCACATGAATATAGGTTGTTCAAGCTCGTAAATATTATAAATTTATAATGAAACAGTGTTAGACATGCTAGACGGTGACTCAATTCACTCAAATTTGTGAATAAACATAAAAGG] [-] EMBL CB673404 [GGAGATCGATGAGGCCTTTTTCTATGGAATTACCACATGAGATATACTCATCTAGTCGTCAAGGCTCAAGTAATCAGACAGCAAGGAGCAGATCAAGTTACCGCCCTGACGAAAGCCCTCCACAAATGTTTCATGGTTTGCTGGTGGAGAGAGAGAACTACAGGCGTATAAACATGGAAGGCATCGCTGAGGTGTTGCTAGCATTGGACAGGATTGAACAAGATGATGAATTGACTTATGAGCAATTGCTGGTGCTAGAAACTAACTTGTTTCTTAGCGGCCTTGGCCTGCATGACCAGCACAGAGATATGAGAATGGATATTGACAACATGTCTTATGAGGAACTATTAGCACTAGAGGAGCGAATCGGTTCTGTCAGCACTGCCCTATCTGATGAGCAGCTTGTGAAGTGTCTCAAGCGAAATGTGTATAAGTTACCAAATTCAGATCTTGAAGCGAACAGAGCTGTACTAGATGACGCCAAGTGCAGCATATGTCAGGAGGAATACATTGAGGGCGAAGAAGTTGGTAGGATGCAGTGTGAGCATCAATACCATGTGTCCTGCATTCATGAATGGCTTAGACAGAAGAACTGGTGTCCAATATGCAAAACTTCAGCAATACCTTCAGAGATGGACAAGGGGGGCACATGAATATAGGTTGTTCAAGCTCGTAAATATTATAAATTTATAATGAAACAGTGTTAGACATGCTAGACGGTGACTCAATTCACTCAAATTTGTGAATAAACATAAAAGG] consensusID : consensus_14470#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 357 fasta sequence [GGTCGTCGCCGCCGNCGCCGCCGCCTTCGCCGCCGTTTGGTCTCGTCGCCTTCCGGACCACCCGCACTAGCCCTTCTCCCTNCTNGCGCGCGCACGCAGNACGGCCGACGACGACGAGCAGGTTTGGAGGGCCGACGCCGACGCGGCGGCTGCCTTTACGGGTNCCGTCGTCTCTGCGGCGGCTGCGATTATACCATCTCACGAGCAGAGAGGAGTAGGGAGCAGGAGCAGGNNAGGGGANGCGCCGTCGTCGGGCTGAGTCCGAACTTTTAGCACAAGTTGTACTTAGAGAAGATATACATCTNCTTGTGCTTGTACTNTGTTTTTGTATTGAGGAAGATTCTTGTAGATCAATAT] [+] EMBL OSC464 [GGTCGTCGCCGCCGNCGCCGCCGCCTTCGCCGCCGTTTGGTCTCGTCGCCTTCCGGACCACCCGCACTAGCCCTTCTCCCTNCTNGCGCGCGCACGCAGNACGGCCGACGACGACGAGCAGGTTTGGAGGGCCGACGCCGACGCGGCGGCTGCCTTTACGGGTNCCGTCGTCTCTGCGGCGGCTGCGATTATACCATCTCACGAGCAGAGAGGAGTAGGGAGCAGGAGCAGGNNAGGGGANGCGCCGTCGTCGGGCTGAGTCCGAACTTTTAGCACAAGTTGTACTTAGAGAAGATATACATCTNCTTGTGCTTGTACTNTGTTTTTGTATTGAGGAAGATTCTTGTAGATCAATAT] consensusID : consensus_14470#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 307 fasta sequence [ACCCCTCATAGCACAGCAATATCTCCGGAGGAATACCTTTGAGGTCCGAAGAATTGGTAGGATCCCAGCTGTGAGCATCAATACCATGTGTCCTGCATTCATGAATGGCTTAGACAGAAGAACTGGTGTCCAATATCCAAACTTCACAATACCTTCAGAGATGGACACAGGGGGGCACATGAATATAGGTTGTTCAAGCTCTAAATATTATAAATTTATAATGAAACAGTGTTAGACATGCTAGACACTGACTCATTCACTCAAATTTGTGAATATGATATATTGCTTTCTTCTTGGAAAAAAAAAA] [+] EMBL BI810914 [ACCCCTCATAGCACAGCAATATCTCCGGAGGAATACCTTTGAGGTCCGAAGAATTGGTAGGATCCCAGCTGTGAGCATCAATACCATGTGTCCTGCATTCATGAATGGCTTAGACAGAAGAACTGGTGTCCAATATCCAAACTTCACAATACCTTCAGAGATGGACACAGGGGGGCACATGAATATAGGTTGTTCAAGCTCTAAATATTATAAATTTATAATGAAACAGTGTTAGACATGCTAGACACTGACTCATTCACTCAAATTTGTGAATATGATATATTGCTTTCTTCTTGGAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14470#1 ------------------------------------------------------------ consensus_14470#3 ------------------------------------------------------------ consensus_14470#0 CATTTCCGCCTCGCGAGGAAGAAGAGAGAGAGAGAGGGCAAAGGTCGTCGCCGCCGCCGC 60 consensus_14470#2 ------------------------------------------------------------ consensus_14470#1 ------------------------------------------------------------ consensus_14470#3 ------------------------------------------------------------ consensus_14470#0 CGCCGCCTTCGCCGCCGTTTGGTCTCGTCGCCTTCCGGACCACCCGCACTAGCCCTTCTC 120 consensus_14470#2 ------------------------------------------------------------ consensus_14470#1 ------------------------------------------------------------ consensus_14470#3 ------------------------------------------------------------ consensus_14470#0 CCTCCTCGCGCGCGCACGCGCCACACGGCCGACGACGACGAGCAGGTTTGGAGGGCCGAC 180 consensus_14470#2 ------------------------------------------------------------ consensus_14470#1 ------------------------------------------------------------ consensus_14470#3 ------------------------------------------------------------ consensus_14470#0 GCCGACGCGGCCGGCCTCCTTACGGGTCCCGTCGTCTCTGCGGCGGCTGCGCCGATATCC 240 consensus_14470#2 ------------------------------------------------------------ consensus_14470#1 ------------------------------------------------------------ consensus_14470#3 ------------------------------------------------------------ consensus_14470#0 ATCTCACGAGCAGAGCAGGAGTAGGGAGCAGGAGCAGGGGAGGGGGGCGCCGTCGTCGGG 300 consensus_14470#2 ------------------------------------------------------------ consensus_14470#1 ------------------------------------------------------------ consensus_14470#3 ------------------------------------------------------------ consensus_14470#0 CTGAGTCCCGAACTTTAGCACAAGTTGTACTAGAGAAGATATACATCTCCTTGTGCTGTA 360 consensus_14470#2 ------------------------------------------------------------ consensus_14470#1 ------------------------------------------------------------ consensus_14470#3 ------------------------------------------------------------ consensus_14470#0 CTCTGTTTTGGTATGGAGGAAGATTCTGGTAGATCAATATCAACAACTGGTTTTCTTAGA 420 consensus_14470#2 ------------------------------------------------------------ consensus_14470#1 ------------------------------------------------------------ consensus_14470#3 ------------------------------------------------------------ consensus_14470#0 AGAGGCTCTAGTGTCTCCTTAAAAGATCAAGGCAATGAGGAGAGGCCAAACAAGACAAAA 480 consensus_14470#2 ------------------------------------------------------------ consensus_14470#1 ------------------------------------------------------------ consensus_14470#3 ------------------------------------------------------------ consensus_14470#0 CTCAACCCAATGAATGCCAGGTGGGCTGACAGTAAGGAGAAGCCAAGATATTTACGTGAG 540 consensus_14470#2 ------------------------------------------------------------ consensus_14470#1 ------------------------------------------------------------ consensus_14470#3 ------------------------------------------------------------ consensus_14470#0 CCATTTCGTTCATCAGGCACTAAGGCTGCATGTCCAAGCTCTTCAAAAGCTCCCGTCAGA 600 consensus_14470#2 ------------------------------------------------------------ consensus_14470#1 ------------------------------------------------------------ consensus_14470#3 ------------------------------------------------------------ consensus_14470#0 AAATATTTCGAGGAAAAACAAGGACGGACATTTTTAGGAGAGGCAGATAATGCAGAAAGT 660 consensus_14470#2 ------------------------------------------------------------ consensus_14470#1 ------------------------------------------------------------ consensus_14470#3 ------------------------------------------------------------ consensus_14470#0 AGTAGCAGAAGAACTGAGGCCAACCGTCTGCAGTGTAGCAAGAAAGCTGTTGTTGAGGAG 720 consensus_14470#2 ------------------------------------------------------------ consensus_14470#1 ------------------------------------------------------------ consensus_14470#3 ------------------------------------------------------------ consensus_14470#0 GATGTGCATCCATATGGTCAGCAGGATGAGCCAGAAGATTTGTTGTCCACATCAACTACT 780 consensus_14470#2 ------------------------------------------------------------ consensus_14470#1 ------------------------------------------------------------ consensus_14470#3 ------------------------------------------------------------ consensus_14470#0 GAAGATCAGCCTGCAGAACTTGATCCTGAACTATTAGATTCTTCTGTTTCTTCAGGGGTG 840 consensus_14470#2 ------------------------------------------------------------ consensus_14470#1 ------------------------------------------------------------ consensus_14470#3 ------------------------------------------------------------ consensus_14470#0 TCTGCACATGCAATTGGTTCTGTAGTCAGAAATGCTGCTTTGAGATCTAAATCACGTCAG 900 consensus_14470#2 ------------------------------------------------------------ consensus_14470#1 ------------------------------------------------------------ consensus_14470#3 ------------------------------------------------------------ consensus_14470#0 CAGAAGGGTAAAGAAGAATTGTGTCAGATTAGACCTCAAACTGCTTCTGCTTTTGTTAAT 960 consensus_14470#2 ------------------------------------------------------------ consensus_14470#1 ------------------------------------------------------------ consensus_14470#3 ------------------------------------------------------------ consensus_14470#0 CGGTCCACTATACCTCGAAATTCTACCAATGGTGTGAAATCATCAAATGCTGCTGGCCCT 1020 consensus_14470#2 ------------------------------------------------------------ consensus_14470#1 ------------------------------------------------------------ consensus_14470#3 ------------------------------------------------------------ consensus_14470#0 GGGGTACAGAGACGTACTCTAAAAAACCTTGGCTGCACATCAATATCTGATGTTTTGCCT 1080 consensus_14470#2 ------------------------------------------------------------ consensus_14470#1 ------------------------------------------------------------ consensus_14470#3 ------------------------------------------------------------ consensus_14470#0 TCTGGCTGTTCTTCAGCTAATTCTATTCATAATAAGAGGGCTGAGGTTATGAGAAACAGG 1140 consensus_14470#2 ------------------------------------------------------------ consensus_14470#1 ------------------------------------------------------------ consensus_14470#3 ------------------------------------------------------------ consensus_14470#0 GCATTTGACGGAGAGAGTTCTTCTAGACCAAGGGGCTTAAATGGACACTCTAGTTTAGGC 1200 consensus_14470#2 ------------------------------------------------------------ consensus_14470#1 ------------------------------------------------------------ consensus_14470#3 ------------------------------------------------------------ consensus_14470#0 CATTCACCTGCCATGTATTCTGGTATCACTGGTCCTAGAGTCAGAACTGCTGAACAATCA 1260 consensus_14470#2 ------------------------------------------------------------ consensus_14470#1 ------------------------------------------------------------ consensus_14470#3 ------------------------------------------------------------ consensus_14470#0 GCTTCTCAGCAAACACGGACTAGTAGCAGAAGTATTCAGGAGTCTGCAGATTCTTCAAGG 1320 consensus_14470#2 ------------------------------------------------------------ consensus_14470#1 ------------------------------------------------------------ consensus_14470#3 ------------------------------------------------------------ consensus_14470#0 ATTAGGCGACCTTCTACTCAGCATGCCAGAGTAAGGGTGCCAAATGAAAGGGAGGATAGC 1380 consensus_14470#2 ------------------------------------------------------------ consensus_14470#1 ------------------------------------------------------------ consensus_14470#3 ------------------------------------------------------------ consensus_14470#0 GTGTTTGCTCTTCGTGAAACTCTTGCAAGGGATCGCCAACCAGAATGGGCTCATTTCTCC 1440 consensus_14470#2 ------------------------------------------------------------ consensus_14470#1 -------------------GGAGATCGATGAGGCCTTTTTCTATGGAATTACCACATGAG 41 consensus_14470#3 ------------------------------------------------------------ consensus_14470#0 TTGGGTGAAGCTGCCCCACGGAGATCGATGAGGCCTTTTTCTATGGAATTACCACATGAG 1500 consensus_14470#2 ------------------------------------------------------------ consensus_14470#1 ATATACTCATCTAGTCGTCAAGGCTCAAGTAATCAGACAGCAAGGAGCAGATCAAGTTAC 101 consensus_14470#3 ------------------------------------------------------------ consensus_14470#0 ATATACTCATCTAGTCGTCAAGGCTCAAGTAATCAGACAGCAAGGAGCAGATCAAGTTAC 1560 consensus_14470#2 ------------------------------------------------------------ consensus_14470#1 CGCCCTGACGAAAGCCCTCCACAAATGTTTCATGGTTTGCTGGTGGAGAGAGAGAACTAC 161 consensus_14470#3 ------------------------------------------------------------ consensus_14470#0 CGCCCTGACGAAAGCCCTCCACAAATGTTTCATGGTTTGCTGGTGGAGAGAGAGAACTAC 1620 consensus_14470#2 ------------------------------------------------------------ consensus_14470#1 AGGCGTATAAACATGGAAGGCATCGCTGAGGTGTTGCTAGCATTGGACAGGATTGAACAA 221 consensus_14470#3 ------------------------------------------------------------ consensus_14470#0 AGGCGTATAAACATGGAAGGCATCGCTGAGGTGTTGCTAGCATTGGACAGGATTGAACAA 1680 consensus_14470#2 ------------------------------------------------------------ consensus_14470#1 GATGATGAATTGACTTATGAGCAATTGCTGGTGCTAGAAACTAACTTGTTTCTTAGCGGC 281 consensus_14470#3 ------------------------------------------------------------ consensus_14470#0 GATGATGAATTGACTTATGAGCAATTGCTGGTGCTAGAAACTAACTTGTTTCTTAGCGGC 1740 consensus_14470#2 ------------------------------------------------------------ consensus_14470#1 CTTGGCCTGCATGACCAGCACAGAGATATGAGAATGGATATTGACAACATGTCTTATGAG 341 consensus_14470#3 ------------------------------------------------------------ consensus_14470#0 CTTGGCCTGCATGACCAGCACAGAGATATGAGAATGGATATTGACAACATGTCTTATGAG 1800 consensus_14470#2 ------------------------------------------------------------ consensus_14470#1 GAACTATTAGCACTAGAGGAGCGAATCGGTTCTGTCAGCACTGCCCTATCTGATGAGCAG 401 consensus_14470#3 ------------------------------------------------------------ consensus_14470#0 GAACTATTAGCACTAGAGGAGCGAATCGGTTCTGTCAGCACTGCCCTATCTGATGAGCAG 1860 consensus_14470#2 ------------------------------------------------------------ consensus_14470#1 CTTGTGAAGTGTCTCAAGCGAAATGTGTATAAGTTACCAAATTCA--GATCTTGAAGCGA 459 consensus_14470#3 ------------------------------------------------------------ consensus_14470#0 CTTGTGAAGTGTCTCAAGCGAAATGTGTATAAGTTACCAAATTCA--GATCTTGAAGCGA 1918 consensus_14470#2 ----------------GGTCGTCGCCGCCGNCGCCGCCGCCTTCGCCGCCGTTTGGTCTC 44 consensus_14470#1 ACAGAGCTGTACTAGATGACGCCAAGTGCAGCA-TATGTCAGGAGGAATACATT-GAGGG 517 consensus_14470#3 ---------------ACCCCTCATAGCACAGCAATATCTCCGGAGGAATACCTTTGAGGT 45 consensus_14470#0 ACAGAGCTGTACTAGATGACGCCAAGTGCAGCA-TATGTCAGGAGGAATACATT-GAGGG 1976 consensus_14470#2 GTCGCCTTCCGGACCACCCGCACTAGCCCTTCTCCCTNCTNGCGCGCGCACGCAGNACGG 104 * ** * * * * * ** * * consensus_14470#1 CGAAGAA-GTTGGTAGGATGCAG--TGTGAGCATCAATACCATGTGTCCTGCATTCATGA 574 consensus_14470#3 CCGAAGA-ATTGGTAGGATCCCAGCTGTGAGCATCAATACCATGTGTCCTGCATTCATGA 104 consensus_14470#0 CGAAGAA-GTTGGTAGGATGCAG--TGTGAGCATCAATACCATGTGTCCTGCATTCATGA 2033 consensus_14470#2 CCGACGACGACGAGCAGGTTTGGAGGGCCGACGCCGACGCGGCGG---CTGCCTTTACGG 161 * * * * * * * * * * * * **** ** * * consensus_14470#1 ATGGCTTAGACAGAAGAACTGGTGTCCAATATGCAAAACTTCAGCAATACCTTCAGAGAT 634 consensus_14470#3 ATGGCTTAGACAGAAGAACTGGTGTCCAATATCCAAA-CTTCA-CAATACCTTCAGAGAT 162 consensus_14470#0 ATGGCTTAGACAGAAGAACTGGTGTCCAATATGCAAAACTTCAGCAATACCTTCAGAGAT 2093 consensus_14470#2 GTNCCGTCGTCTCTGCGGCGGCTG-CGATTATACCA--TCTCACGAG------CAGAGAG 212 * * * * * * * ** * * *** * * *** * ****** consensus_14470#1 GGACA-AGGGGGGCACATGAATATAGGTTGTTCAAGC-TCGTAAATATTATAAATTTATA 692 consensus_14470#3 GGACACAGGGGGGCACATGAATATAGGTTGTTCAAGC-TC-TAAATATTATAAATTTATA 220 consensus_14470#0 GGACA-AGGGGGGCACATGAATATAGGTTGTTCAAGC-TCGTAAATATTATAAATTTATA 2151 consensus_14470#2 GAGTAGGGAGCAGGAGCAGGNNAGGGGANGCGCCGTCGTCGGGCTGAGTCCGAACTTTTA 272 * * * * * * * * ** * * * ** * * ** ** ** consensus_14470#1 ATG-AAACAGTG-TTAGACATGCTAGACGGTGACTCAATTCACTCAAATTTGTGAATA-A 749 consensus_14470#3 ATG-AAACAGTG-TTAGACATGCTAGACACTGACTCA-TTCACTCAAATTTGTGAATATG 277 consensus_14470#0 ATG-AAACAGTG-TTAGACATGCTAGACACTGACTCAATTCACTCAAATTTGTGAATATG 2209 consensus_14470#2 GCACAAGTTGTACTTAGAGAAGATATACATCTNCTTG--TGCTTGTACTNTGTTTTTGTA 330 ** ** ***** * * ** ** ** * * * * *** * consensus_14470#1 ACATAAAAGG-------------------------------------------------- 759 consensus_14470#3 ATATATTGCTTTCTTCTTGGAAAAAAAAAA------------------------------ 307 consensus_14470#0 ATAGATTGCTTTCTTCTTGGAAACTCCTGTACATTTTTGTTTCGGTATCCGGTCCAAATT 2269 consensus_14470#2 TTGAGGAAGATTCTTGTAGATCAATAT--------------------------------- 357 consensus_14470#1 ------------------------------------------------------------ consensus_14470#3 ------------------------------------------------------------ consensus_14470#0 ACACATCACCTGCCATCAGATAATGAGACCAGAGGACCCTTGGGAAAAATTCCTGCTTGA 2329 consensus_14470#2 ------------------------------------------------------------ consensus_14470#1 ------------------------------------------------------------ consensus_14470#3 ------------------------------------------------------------ consensus_14470#0 TTGGACTTATGGTTACAATAATTAAAATTCTGCTCGATTGGAGTGTTAGTAAAAATTCAT 2389 consensus_14470#2 ------------------------------------------------------------ consensus_14470#1 ------------------------------------------------------------ consensus_14470#3 ------------------------------------------------------------ consensus_14470#0 TCACTTTGGCCCCAACCACATATTAGATTTGCAATTACTGATTTGGTGTCCAGTGTTTCA 2449 consensus_14470#2 ------------------------------------------------------------ consensus_14470#1 ------------------------------------------------------------ consensus_14470#3 ------------------------------------------------------------ consensus_14470#0 GGTGCTTTGTAGCCTGGTTTGAGTTTGGAGTGTTCGTAAGGTGTTATCTGTTGGGTTGGT 2509 consensus_14470#2 ------------------------------------------------------------ consensus_14470#1 ------------------------------------------------------------ consensus_14470#3 ------------------------------------------------------------ consensus_14470#0 ACTCGGATGTGTACTCTTCCTTGGGTATCAATGTAATAAGGCAAAGCTTTTGCCTTTGTC 2569 consensus_14470#2 ------------------------------------------------------------ consensus_14470#1 ---------------------------------------------------------- consensus_14470#3 ---------------------------------------------------------- consensus_14470#0 TCAAAAAAAGGATTTGCAATTTCCTTGATCTTAATGAAATTTGGTCAGCACCCTTTCG 2627 consensus_14470#2 ---------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||