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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14470#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 2627 fasta sequence
[CATTTCCGCCTCGCGAGGAAGAAGAGAGAGAGAGAGGGCAAAGGTCGTCGCCGCCGCCG-CCGCCGCC-TTCGCCGCCGTTTGGTCTCGTCGCCTTCCGGACCACCCGCACTAGCCCTTCTCCCTCCTCGCGCGCGCACGCGCCACACGGCCGACGACGACGAGCAGGTTTGGAGGGCCGACGCCGACGCGGCCGGCCTCCTTACGGGTCCCGTCGTCTCTGCGGCGGCTGCGCCGATATCCATCTCACGAGCAGAGCAGGAGTAGGGAGCAGGAGCAGGGGAGGGGGGCGCCGTCGTCGGGCTGAGTCCCGAACTTTAGCACAAGTTGTACTAGAGAAGATATACATCTCCTTGTGCTGTACTCTGTTTTGGTATGGAGGAAGATTCTGGTAGATCAATATCAACAACTGGTTTTCTTAGAAGAGGCTCTAGTGTCTCCTTAAAAGATCAAGGCAATGAGGAGAGGCCAAACAAGACAAAACTCAACCCAATGAATGCCAGGTGGGCTGACAGTAAGGAGAAGCCAAGATATTTACGTGAGCCATTTCGTTCATCAGGCACTAAGGCTGCATGTCCAAGCTCTTCAAAAGCTCCCGTCAGAAAATATTTCGAGGAAAAACAAGGACGGACATTTTTAGGAGAGGCAGATAATGCAGAAAGTAGTAGCAGAAGAACTGAGGCCAACCGTCTGCAGTGTAGCAAGAAAGCTGTTGTTGAGGAGGATGTGCATCCATATGGTCAGCAGGATGAGCCAGAAGATTTGTTGTCCACATCAACTACTGAAGATCAGCCTGCAGAACTTGATCCTGAACTATTAGATTCTTCTGTTTCTTCAGGGGTGTCTGCACATGCAATTGGTTCTGTAGTCAGAAATGCTGCTTTGAGATCTAAATCACGTCAGCAGAAGGGTAAAGAAGAATTGTGTCAGATTAGACCTCAAACTGCTTCTGCTTTTGTTAATCGGTCCACTATACCTCGAAATTCTACCAATGGTGTGAAATCATCAAATGCTGCTGGCCCTGGGGTACAGAGACGTACTCTAAAAAACCTTGGCTGCACATCAATATCTGATGTTTTGCCTTCTGGCTGTTCTTCAGCTAATTCTATTCATAATAAGAGGGCTGAGGTTATGAGAAACAGGGCATTTGACGGAGAGAGTTCTTCTAGACCAAGGGGCTTAAATGGACACTCTAGTTTAGGCCATTCACCTGCCATGTATTCTGGTATCACTGGTCCTAGAGTCAGAACTGCTGAACAATCAGCTTCTCAGCAAACACGGACTAGTAGCAGAAGTATTCAGGAGTCTGCAGATTCTTCAAGGATTAGGCGACCTTCTACTCAGCATGCCAGAGTAAGGGTGCCAAATGAAAGGGAGGATAGCGTGTTTGCTCTTCGTGAAACTCTTGCAAGGGATCGCCAACCAGAATGGGCTCATTTCTCCTTGGGTGAAGCTGCCCCACGGAGATCGATGAGGCCTTTTTCTATGGAATTACCACATGAGATATACTCATCTAGTCGTCAAGGCTCAAGTAATCAGACAGCAAGGAGCAGATCAAGTTACCGCCCTGACGAAAGCCCTCCACAAATGTTTCATGGTTTGCTGGTGGAGAGAGAGAACTACAGGCGTATAAACATGGAAGGCATCGCTGAGGTGTTGCTAGCATTGGACAGGATTGAACAAGATGATGAATTGACTTAT-GAGCAATTGCTGGTGCTAGAAACTAACTT-GTTTCTTAGCGGCCTTGGCCTGCA-TGACCAGCACA-GAGA-TATGAGAATGGA-TATTGA-CAACATGTCTTATGAGGAACTATTAGCACTAGAGGAGCGAATCGGTTCTGTCAGCACTGCCCTATCTGATGAGCAGCTTGTGAAGTGTCTCAAGCGAAATGTGTATAAGTTA-CCAAATTCAGATCTTGAAGCGAACAGAGCTGTACTAGATGACGCCAAGTGCAGCATATGTCAGGAGGAATACATTGAGGGCGAAGAAGTTGGTAGGATGCAGTGTGAGCATCAATACCATGTGTCCTGCATTCATGAATGGCTTAGACAGAAGAACTGGTGTCCAATATGCAAAACTTCAGCAATACCTTCAGAGATGGACAAGGGGGGCACATGAATATAGGTTGTTCAAGCTCGTAAATATTATAAATTTATAATGAAACAGTGTTAGACATGCTAGACACTGACTCAATTCACTCAAATTTGTGAATATGA-TAGATTGCTTTCTTCTTGGAAACTCCTGTACATTTTTGTTTCGGTATCCGGTCCAAATTACACATCACCTGCCATCAGATAATGAGACCAGAGGACCCTTGGGAAAAATTCCTGCTTGATTGGACTTATGGTTACAATAATTAAAATTCTGCTCGATTGGAGTGTTAGTAAAAATTCATTCACTTTGG-CCCCAACCACATATTAGATTTGCAATTACTGATTTGGTGTCCAGTGTTTCAGGTGCTTTGTAGCCTGGTTTGAGTTTGGAGTGTTCGTAAGGTGTTATCTGTTGGGTTGGTACTCGGATGTGTACTCTTCCTTGGGTATCAATGTAATAAGGCAAAGCTTTTGCCTTTGTCTCAAAAAAAGGATTTGCAATTT-CCTTGAT-CTTAATGAAATTTGGTCAGCACCCTTTCG]
[+] EMBL AK066069 [CATTTCCGCCTCGCGAGGAAGAAGAGAGAGAGAGAGGGCAAAGGTCGTCGCCGCCGCCG CCGCCGCC TTCGCCGCCGTTTGGTCTCGTCGCCTTCCGGACCACCCGCACTAGCCCTTCTCCCTCCTCGCGCGCGCACGCGCCACACGGCCGACGACGACGAGCAGGTTTGGAGGGCCGACGCCGACGCGGCCGGCCTCCTTACGGGTCCCGTCGTCTCTGCGGCGGCTGCGCCGATATCCATCTCACGAGCAGAGCAGGAGTAGGGAGCAGGAGCAGGGGAGGGGGGCGCCGTCGTCGGGCTTAGTCCCGAACTTTAGCACAAGTTGTACTAGAGAAGATATACATCTCCTTGTGCTGTACTCTGTTTTGGTATGGAGGAAGATTCTGGTAGATCAATATCAACAACTGGTTTTCTTAGAAGAGGCTCTAGTGTCTCCTTAAAAGATCAAGGCAATGAGGAGAGGCCAAACAAGACAAAACTCAACCCAATGAATGCCAGGTGGGCTGACAGTAAGGAGAAGCCAAGATATTTACGTGAGCCATTTCGTTCATCAGGCACTAAGGCTGCATGTCCAAGCTCTTCAAAAGCTCCCGTCAGAAAATATTTCGAGGAAAAACAAGGACGGACATTTTTAGGAGAGGCAGATAATGCAGAAAGTAGTAGCAGAAGAACTGAGGCCAACCGTCTGCAGTGTAGCAAGAAAGCTGTTGTTGAGGAGGATGTGCATCCATATGGTCAGCAGGATGAGCCAGAAGATTTGTTGTCCACATCAACTACTGAAGATCAGCCTGCAGAACTTGATCCTGAACTATTAGATTCTTCTGTTTCTTCAGGGGTGTCTGCACATGCAATTGGTTCTGTAGTCAGAAATGCTGCTTTGAGATCTAAATCACGTCAGCAGAAGGGTAAAGAAGAATTGTGTCAGATTAGACCTCAAACTGCTTCTGCTTTTGTTAATCGGTCCACTATACCTCGAAATTCTACCAATGGTGTGAAATCATCAAATGCTGCTGGCCCTGGGGTACAGAGACGTACTCTAAAAAACCTTGGCTGCACATCAATATCTGATGTTTTGCCTTCTGGCTGTTCTTCAGCTAATTCTATTCATAATAAGAGGGCTGAGGTTATGAGAAACAGGGCATTTGACGGAGAGAGTTCTTCTAGACCAAGGGGCTTAAATGGACACTCTAGTTTAGGCCATTCACCTGCCATGTATTCTGGTATCACTGGTCCTAGAGTCAGAACTGCTGAACAATCAGCTTCTCAGCAAACACGGACTAGTAGCAGAAGTATTCAGGAGTCTGCAGATTCTTCAAGGATTAGGCGACCTTCTACTCAGCATGCCAGAGTAAGGGTGCCAAATGAAAGGGAGGATAGCGTGTTTGCTCTTCGTGAAACTCTTGCAAGGGATCGCCAACCAGAATGGGCTCATTTCTCCTTGGGTGAAGCTGCCCCACGGAGATCGATGAGGCCTTTTTCTATGGAATTACCACATGAGATATACTCATCTAGTCGTCAAGGCTCAAGTAATCAGACAGCAAGGAGCAGATCAAGTTACCGCCCTGACGAAAGCCCTCCACAAATGTTTCATGGTTTGCTGGTGGAGAGAGAGAACTACAGGCGTATAAACATGGAAGGCATCGCTGAGGTGTTGCTAGCATTGGACAGGATTGAACAAGATGATGAATTGACTTAT GAGCAATTGCTGGTGCTAGAAACTAACTT GTTTCTTAGCGGCCTTGGCCTGCA TGACCAGCACA GAGA TATGAGAATGGA TATTGA CAACATGTCTTATGAGGAACTATTAGCACTAGAGGAGCGAATCGGTTCTGTCAGCACTGCCCTATCTGATGAGCAGCTTGTGAAGTGTCTCAAGCGAAATGTGTATAAGTTA CCAAATTCAGATCTTGAAGCGAACAGAGCTGTACTAGATGACGCCAAGTGCAGCATATGTCAGGAGGAATACATTGAGGGCGAAGAAGTTGGTAGGATGCAGTGTGAGCATCAATACCATGTGTCCTGCATTCATGAATGGCTTAGACAGAAGAACTGGTGTCCAATATGCAAAACTTCAGCAATACCTTCAGAGATGGACAAGGGGGGCACATGAATATAGGTTGTTCAAGCTCGTAAATATTATAAATTTATAATGAAACAGTGTTAGACATGCTAGACACTGACTCAATTCACTCAAATTTGTGAATATGA TGGATTGCTTTCTTCTTGGAAACTCCTGTACATTTTTGTTTCGGTATCCGGTCCAAATTACACATCACCTGCCATCAGATAATGAGACCAGAGGACCCTTGGGAAAAATTCCTGCTTGATTGGACTTATGGTTACAATAATTAAAATTCTGCTCGATTGGAGTGTTAGTAAAAATTCATTCACTTTGG CCCCAACCACATATTAGATTTGCAATTACTGATTTGGTGTCCAGTGTTTCAGGTGCTTTGTAGCCTGGTTTGAGTTTGGAGTGTTCGTAAGGTGTTATCTGTTGGGTTGGTACTCGGATGTGTACTCTTCCTTGGGTATCAATGTAATAAGGCAAAGCTTTTGCCTTTGTCTCAAAAAAAGGATTTGCAATTT CCTTGAT CTTAATGAAATTTGGTCAGCACCCTTTCG]
[+] EMBL CB673403 [ GAGAGAGCCATAGGGCAAAGGTCGTCGCCGCCGCCGACCGCCGCCATTCGCCGCCGTTTGGTCTCGTCGCCTTCCGGACCACCCGCACTAGCCCTTCTCCCTCCTCGCGCGCGCACGCGCCACACGGGCGACGACGACGAGCAGGTTTGGAGGGCCGACGCCGACGCGGCCGGCCTCCTTACGGGTCCCGGCGTCTCTGCGGCGGCTGCGCCGATATCCATCTCACGAGCAGAGCAGGAGTAGGGAGCAGGAGCAGGGGAGGGGGGCGCCGTCTTCGGGCTGAGTCCCGAACTTTAACACAAGTTGTACTAGAGAAGATATACATCTCCTTGTGCTGTACTCGGTTTTGGTATGGAGGAAGATTCTGGCAGATCAAGATCAACAACTGGTTTTCTTAGAAGAGGCTCTAGTGTCTCCTTAAAAGATCAAGGCAATGAGGAGAGGCCAGACAAGACAAAACTCAACCCAATGAATGCCAGGTGGGCTGACAGTAAGGAGAAGCCAAGATATTTACGTGAGGCATTTCGTTCATCACGCACTAAGGCTGCATGTCCAAGCTCTTCAAAAGCTCCCGTCAGAAAATATTTCG ]
[+] EMBL CB649504 [ GAGAGAGAGAGGGCAAAGGTCGTCGCCGCCGCCG CCGCCGCC TTCGCCGCCGTTTGGTCTCGTCGCCTTCCGGACCACCCGCACTAGCCCTTCTCCCTCCTCGCGCGCGCACGCGCCACACGGCCGACGACGACGAGCAGGTTTGGAGGGCCGACGCCGACGCGGCCGGCCTCCTTACGGGTCCCGTCGTCTCTGCGGCGGCTGCGCCGATATCCATCTCACGAGCAGAGCAGGAGTAGGGAGCAGGAGCAGGGGAGGGGGGCGCCGTCGTCGGGCTGAGTCCCGAACTTTAGCACAAGTTGTACTAGAGAAGATATACATCTCCTTGTGCTGTACTCTGTTTTGGTATGGAGGAAGATTCTGGTAGATCAATATCAACAACTGGTTTTCTTAGAAGAGGCTCTAGTGTCTCCTTAAAAGATCAAGGCAATGAGGAGAGGCCAAACAAGACAAAACTCAACCCAATGAATGCCAGGTGGGCTGACAGTAAGGAGAAGCCAAGATATTTACGTGAGCCATTTCGTTCATCAGGCACTAAGGCTGCATGTCCAAGCTCTTCAAAAGCTCCCGTCAGAAAATATTTCGAGGAAAAACAAGGACGGACATTTTTAGGAGAGGCAGATAATGCAGAAAGTAGTAGCAGAAGAACTGAGGCCAACCGTCTGCAGTGTAGCAAGAAAGCTGTTGTTGAGGAGGATGTGCATCCATATGGTCAGCAGGATGAGCCAGAAGATTTGTTGTCCACATCAACTACTGAAGATCAGCCTGCAGAACTTGATCCTNGACTATTAGATTCTTCTGTTTCTTCAGGGGTGT ]
[+] EMBL CB637687 [ GGCAAAGGTCGTCGCCGCCGCCG CCGCCGCC TTCGCCGCCGTTTGGTCTCGTCGCCTTCCGGACCACCCGCACTAGCCCTTCTCCCTCCTCGCGCGCGCACGCGCCACACGGCCGACGACGACGAGCAGGTTTGGAGGGCCGACGCCGACGCGGGCGGCCTCCTTACGGGTTTTTTTGTCTCTGCGGCGGCTGCGCCGATATCCATCTCACGAGCAGAGCAGGAGTAGGGAGCAGGAGCAG ]
[+] EMBL CF307060 [ ACGAGCAGAGCAGGAGTAGGGAGCAGGAGCAGGGGAGGGGGGCGCCGTCGTCGGGCTGAGTCCCGAACTTTAGCACAAGTTGTACTAGAGAAGATATACATCTCCTTGTGCTGTACTCTGTTTTGGTATGGAGGAAGATTCTGGTAGATCAATATCAACAACTGGTTTTCTTAGAAGAGGCTCTAGTGTCTCCTTAAAAGATCAAGGCAATGAGGAGAGGCCAAACAAGACAAAACTCAACCCAATGAATGCCAGGTGGGCTGACAGTAAGGAGAAGCCAAGATATTTACGTGAGCCATTTCGTTCATCAGGCACTAAGGCTGCATGTCCAAGCTCTTCAAAAGCTCCCGTCAGAAAATATTTCGAGGAAAAACAAGGACGGACATTTTTAGGAGAGGCAGATAATGCAGAAAGTAGTAGCAGAAGAACTGAGGCCAACCGTCTGCAGTGTAGCAAGAAAGCTGTTGTTGAGGAGGATGTGCATCCATATGGTCAGCAGGATGAGCCAGAAGATTTGTTGTCCACATCAACTACTGAAGATCAGCCTGCAGAACTTGATCCTGAACTATTAGATTCTTCTGTTTCTTCAGGGGTGTCTGCACATGCAATTGG ]
[+] EMBL CF303386 [ CAGAGCAGGAGTAGGGAGCAGGAGCAGGGGAGGGGGGCGCCGTCGTCGGGCTGAGTCCCGAACTTTAGCACAAGTTGTACTAGAGAAGATATACATCTCCTTGTGCTGTACTCTGTTTTGGTATGGAGGAAGATTCTGGTTTATCAATATCAACAACTGGTTTTCTTAGAAGAGGCTCTAGTGTCTCCTTAAAAGATCAAGGCAATGAGGAGAGGCCAAACAAGACAAAACTCAACCCAATGAATGCCAGGTGGGCTGACAGTAAGGAGAAGCCAAGATATTTACGTGAGCCATTTCGTTCATCAGGCACTAAGGCTGCATGTCCAAGCTCTTCAAAAGCTCCCGTCAGAAAATATTTCGAGGAAAAACAAGGACGGACATTTTTAGGAGAGGCAGATAATGCAGAAAGTAGTAGCAGAAGAACTGAGGCCAACCGTCTGCAGTGTAGCAAGAAAGCTGTTGTTGAGGAGGATGTGCATCCATATGGTCAGCAGGATGAGCCAGAAGATTTGTTGTCCACATCAACTACTGAAGATCAGCCTGCAGAACTTG ]
[+] EMBL CF303821 [ CAGAGCAGGAGTAGGGAGCAGGAGCAGGGGAGGGGGGCGCCGTCGTCGGGCTGAGTCCCGAACTTTAGCACAAGTTGTACTAGAGAAGATATACATCTCCTTGTGCTGTACTCTGTTTTGGTATGGAGGAAGATTCTGGTAGATCAATATCAACAACTGGTTTTCTTAGAAGAGGCTCTAGTGTCTCCTTAAAAGATCAAGGCAATGAGGAGAGGCCAAACAAGACAAAACTCAACCCAATGAATGCCAGGTGGGCTGACAGTAAGGAGAAGCCAAGATATTTACGTGAGCCATTTCGTTCATCAGGCACTAAGGCTGCATGTCCAAGCTCTTCAAAAGCTCCCGTCAGAAAATATTTCGAGGAAAAACAAGGACGGACATTTTTAGGAGAGGCAGATAATGCAGAAAGTAGTAGCAGAAGAACTGAGGCCAACCGTCTGCAGTGTAGCAAGAAAGCTGTTGTTGAGGAGGATGTGCATCCATATGGTCAGCAGGATGAGCCAGAAGATTTGTTGTCCACATCAACTACTGAAGATCAGCCTGCAGAACTTGA ]
[+] EMBL CF303757 [ CTGAGTCCCGAACTTTAGCACAAGTTGTACTAGAGAAGATATACATCTCCTTGTGCTGTACTCTGTTTTGGTATGGAGGAAGATTCTGGTAGATCAATATCAACAACTGGTTTTCTTAGAAGAGGCTCTAGTGTCTCCTTAAAAGATCAAGGCAATGAGGAGAGGCCAAACAAGACAAAACTCAACCCAATGAATGCCAGGTGGGCTGACAGTAAGGAGAAGCCAAGATATTTACGTGAGCCATTTCGTTCATCAGGCACTAAGGCTGCATGTCCAAGCTCTTCAAAAGCTCCCGTCAGAAAATATTTCGAGGAAAAACAAGGACGGACATTTTTAGGAGAGGCAGATAATGCAGAAAGTAGTAGCAGAAGAACTGAGGCCAACCGTCTGCAGTGTAGCAAGAAAGCTGTTGTTGAGGAGGATGTGCATCCATATGGTCAGCAGGATGAGCCAGAAGATTTGTTGTCCACATCAACTACTGAAGATCAGCCTGCAGAACTTGATCCTGAACTATTAGATTCTTCTGTTTCTTCAGGGGTGTCTGCACATGCAATTGGTTCTGTAGTCAGAAATGCTGCTTTGAGATCTAAA ]
[+] EMBL C99216 [ AATTGACTTATGGAGCAATTGCTGGTGCTAGAAACTAACTTGGTTTCTTAGCGCCCTTGGCCTGCA TGACCAGCACA GAGA TATGCG ATGGATTATTGACCAACATGTCTTATGAGGAACTATTAGCACTAGAGGAGCGAATCGGTTCTGTCAGCACTGCCCTATCTGATGAGCAGCTTGTGAAGTGTCTCAAGCGAAATGTGTATAAGTTA CCAAATTCAGATCTTGAAGCGAACAGAGCTGTACTAGATGACGCCAAGTGCAGCATATGTCAGGAGGAATACATTGAGGGCGAAGAAGTTGGTAGGATGCAGTGTGAGCATCAATACCATGTGTCCTGCATTCATGAATGGCTTAGACAGAAGAACTGGTGTCCAATATGCAAAACTTCAGCAATACCTTCAGAGATGGACAAGGGGGGCACATGAATATAGGTTGTTCAAGCTCGTAAATATTATAAATTTATAATGAAACAGTGTTAGACATGCTAGACACTGACTCAATTCACTCAAATTTGTGAATATGA TAGATTGCTTTCTaaaaaaaa ]
[+] EMBL CF308057 [ ATTGCTGGTGCTAGAAACTAACTT GTTTCTTAGCGGCCTTGGCCTGCA TGACCAGCACA GAGA TATGAGAATGGA TATTGA CAACATGTCTTATGAGGAACTATTAGCACTAGAGGAGCGAATCGGTTCTGTCAGCACTGCCCTATCTGATGAGCAGCTTGTGAAGTGTCTCAAGCGAAATGTGTATAAGTTA CCAAATTCAGATCTTGAAGCGAACAGAGCTGTACTAGATGACGCCAAGTGCAGCATATGTCAGGAGGAATACATTGAGGGCGAAGAAGTTGGTAGGATGCAGTGTGAGCATCAATACCATGTGTCCTGCATTCATGAATGGCTTAGACAGAAGAACTGGTGTCCAATATGCAAAACTTCAGCAATATCTTCAGAGATGGACAAGGGGGGCACATGAATTAAGGNTGTTCAAGCTCGTAAATATTATAAATTTATAATGAAACAGTGTTAGACATGCTAGACACTGACTCAATTCACTCAAATTTGTGAATATGATTAGATTGCTTTCTTCTT ]
[+] EMBL BI807517 [ GGCCTTGGCCTGCATTGACCAGCACATGAGATTATGAGAATGGA TATTGA CAACATGTCTTATGAGGAACTATTAGCACTAGAGGAGCGAATCGGTTCTGTCAGC CTGCCCTATCTGATGAGCAGCTTGTGAAGTGTCTCAAGCGAAATGTGTATAAGTTACCCAAATTCAGATCTTGAAGCGAACAGAGCTGTACTAGATGACGCCAAGTGCAGCATATGTCAGGAGGAATACATTGAGGGCGAAGAAGTTGGTAGGATGCAGTGTGAGCATC ATACCATGTGTCCTGCATTCATGAATGGCTTAGACAGAAGAACTGGTGTCCCATATGCAAAACTTCAGCAATACCTTCAGAGATGGACAAGGGGGGCACATGAATATAGGTTGTTCAAGCTCGTAAATATTATAAATTTATAATGAAACAGTGTTAGACATGCTAGACACTGACTCAATTCACTCCAATTTGTGAATATGA TATATTGCTTTCTTCTTGAAAAaaaaaa ]
[-] EMBL BU667004 [ acCCATGTGTCCTGCATTCATGAATGGCTTAGACAGAAGAACTGGTGTCCCATATGCCAAACTTCAGCAATACCTTCAGAGATGGACAAGGGGGGCACATGAATATAGGTTGTTCAAGCTCGTAAATATTATAAATTTATAATGAAACAGTGTTAGACATGCTAGACACTGACTCAATTCACTCAAAT ]
[-] EMBL CB637688 [ TGCAAAACTTCAGCAATACCTTCAGAGATGGACAAGGGGGGCACATGAATATAGGTTGTTCAAGCTCGTAAATATTATAAATTTATAATGAAACAGTGTTAGACATGCTAGACACTGACTCAATTCACTCAAATTTGTGAATATGA TAGATTGCTTTCTTCTTGGAAACTCCTGTACATTTTTGTTTCGGTATCCGGTCCAAATTACACATCACCTGCCATCAGATAATGAGACCAGAGGACCCTTGGGAAAAATTCCTGCTTGATTGGACTTATGGTTACAATAATTAAAATTCTGCTCGATTGGAGTGTTAGTAAAAATTCATTCACTTTGGCCCCCAACCACATATTAGATTTGCAATTACTGATTTGGTGTCCAGTGTTTCAGGTGCTTTGTAGCCTGGTTTGAGTTTGGAGTGTTCGTAAGGTGTTATCTGTTGGGTTGGTACTCGGATGTGTACTCTTCCTTGGGTATCAATGTAATAAGGCAAAGCTTTTGCCTTTGTCTCAAAAAAAGGATTTGCAATTTCCCTTGATCCTTAATGAAATTTGGTCAGCACCCTTaac]
consensusID : consensus_14470#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 759 fasta sequence
[GGAGATCGATGAGGCCTTTTTCTATGGAATTACCACATGAGATATACTCATCTAGTCGTCAAGGCTCAAGTAATCAGACAGCAAGGAGCAGATCAAGTTACCGCCCTGACGAAAGCCCTCCACAAATGTTTCATGGTTTGCTGGTGGAGAGAGAGAACTACAGGCGTATAAACATGGAAGGCATCGCTGAGGTGTTGCTAGCATTGGACAGGATTGAACAAGATGATGAATTGACTTATGAGCAATTGCTGGTGCTAGAAACTAACTTGTTTCTTAGCGGCCTTGGCCTGCATGACCAGCACAGAGATATGAGAATGGATATTGACAACATGTCTTATGAGGAACTATTAGCACTAGAGGAGCGAATCGGTTCTGTCAGCACTGCCCTATCTGATGAGCAGCTTGTGAAGTGTCTCAAGCGAAATGTGTATAAGTTACCAAATTCAGATCTTGAAGCGAACAGAGCTGTACTAGATGACGCCAAGTGCAGCATATGTCAGGAGGAATACATTGAGGGCGAAGAAGTTGGTAGGATGCAGTGTGAGCATCAATACCATGTGTCCTGCATTCATGAATGGCTTAGACAGAAGAACTGGTGTCCAATATGCAAAACTTCAGCAATACCTTCAGAGATGGACAAGGGGGGCACATGAATATAGGTTGTTCAAGCTCGTAAATATTATAAATTTATAATGAAACAGTGTTAGACATGCTAGACGGTGACTCAATTCACTCAAATTTGTGAATAAACATAAAAGG]
[-] EMBL CB673404 [GGAGATCGATGAGGCCTTTTTCTATGGAATTACCACATGAGATATACTCATCTAGTCGTCAAGGCTCAAGTAATCAGACAGCAAGGAGCAGATCAAGTTACCGCCCTGACGAAAGCCCTCCACAAATGTTTCATGGTTTGCTGGTGGAGAGAGAGAACTACAGGCGTATAAACATGGAAGGCATCGCTGAGGTGTTGCTAGCATTGGACAGGATTGAACAAGATGATGAATTGACTTATGAGCAATTGCTGGTGCTAGAAACTAACTTGTTTCTTAGCGGCCTTGGCCTGCATGACCAGCACAGAGATATGAGAATGGATATTGACAACATGTCTTATGAGGAACTATTAGCACTAGAGGAGCGAATCGGTTCTGTCAGCACTGCCCTATCTGATGAGCAGCTTGTGAAGTGTCTCAAGCGAAATGTGTATAAGTTACCAAATTCAGATCTTGAAGCGAACAGAGCTGTACTAGATGACGCCAAGTGCAGCATATGTCAGGAGGAATACATTGAGGGCGAAGAAGTTGGTAGGATGCAGTGTGAGCATCAATACCATGTGTCCTGCATTCATGAATGGCTTAGACAGAAGAACTGGTGTCCAATATGCAAAACTTCAGCAATACCTTCAGAGATGGACAAGGGGGGCACATGAATATAGGTTGTTCAAGCTCGTAAATATTATAAATTTATAATGAAACAGTGTTAGACATGCTAGACGGTGACTCAATTCACTCAAATTTGTGAATAAACATAAAAGG]
consensusID : consensus_14470#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 357 fasta sequence
[GGTCGTCGCCGCCGNCGCCGCCGCCTTCGCCGCCGTTTGGTCTCGTCGCCTTCCGGACCACCCGCACTAGCCCTTCTCCCTNCTNGCGCGCGCACGCAGNACGGCCGACGACGACGAGCAGGTTTGGAGGGCCGACGCCGACGCGGCGGCTGCCTTTACGGGTNCCGTCGTCTCTGCGGCGGCTGCGATTATACCATCTCACGAGCAGAGAGGAGTAGGGAGCAGGAGCAGGNNAGGGGANGCGCCGTCGTCGGGCTGAGTCCGAACTTTTAGCACAAGTTGTACTTAGAGAAGATATACATCTNCTTGTGCTTGTACTNTGTTTTTGTATTGAGGAAGATTCTTGTAGATCAATAT]
[+] EMBL OSC464 [GGTCGTCGCCGCCGNCGCCGCCGCCTTCGCCGCCGTTTGGTCTCGTCGCCTTCCGGACCACCCGCACTAGCCCTTCTCCCTNCTNGCGCGCGCACGCAGNACGGCCGACGACGACGAGCAGGTTTGGAGGGCCGACGCCGACGCGGCGGCTGCCTTTACGGGTNCCGTCGTCTCTGCGGCGGCTGCGATTATACCATCTCACGAGCAGAGAGGAGTAGGGAGCAGGAGCAGGNNAGGGGANGCGCCGTCGTCGGGCTGAGTCCGAACTTTTAGCACAAGTTGTACTTAGAGAAGATATACATCTNCTTGTGCTTGTACTNTGTTTTTGTATTGAGGAAGATTCTTGTAGATCAATAT]
consensusID : consensus_14470#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 307 fasta sequence
[ACCCCTCATAGCACAGCAATATCTCCGGAGGAATACCTTTGAGGTCCGAAGAATTGGTAGGATCCCAGCTGTGAGCATCAATACCATGTGTCCTGCATTCATGAATGGCTTAGACAGAAGAACTGGTGTCCAATATCCAAACTTCACAATACCTTCAGAGATGGACACAGGGGGGCACATGAATATAGGTTGTTCAAGCTCTAAATATTATAAATTTATAATGAAACAGTGTTAGACATGCTAGACACTGACTCATTCACTCAAATTTGTGAATATGATATATTGCTTTCTTCTTGGAAAAAAAAAA]
[+] EMBL BI810914 [ACCCCTCATAGCACAGCAATATCTCCGGAGGAATACCTTTGAGGTCCGAAGAATTGGTAGGATCCCAGCTGTGAGCATCAATACCATGTGTCCTGCATTCATGAATGGCTTAGACAGAAGAACTGGTGTCCAATATCCAAACTTCACAATACCTTCAGAGATGGACACAGGGGGGCACATGAATATAGGTTGTTCAAGCTCTAAATATTATAAATTTATAATGAAACAGTGTTAGACATGCTAGACACTGACTCATTCACTCAAATTTGTGAATATGATATATTGCTTTCTTCTTGGAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14470#1 ------------------------------------------------------------
consensus_14470#3 ------------------------------------------------------------
consensus_14470#0 CATTTCCGCCTCGCGAGGAAGAAGAGAGAGAGAGAGGGCAAAGGTCGTCGCCGCCGCCGC 60
consensus_14470#2 ------------------------------------------------------------
consensus_14470#1 ------------------------------------------------------------
consensus_14470#3 ------------------------------------------------------------
consensus_14470#0 CGCCGCCTTCGCCGCCGTTTGGTCTCGTCGCCTTCCGGACCACCCGCACTAGCCCTTCTC 120
consensus_14470#2 ------------------------------------------------------------
consensus_14470#1 ------------------------------------------------------------
consensus_14470#3 ------------------------------------------------------------
consensus_14470#0 CCTCCTCGCGCGCGCACGCGCCACACGGCCGACGACGACGAGCAGGTTTGGAGGGCCGAC 180
consensus_14470#2 ------------------------------------------------------------
consensus_14470#1 ------------------------------------------------------------
consensus_14470#3 ------------------------------------------------------------
consensus_14470#0 GCCGACGCGGCCGGCCTCCTTACGGGTCCCGTCGTCTCTGCGGCGGCTGCGCCGATATCC 240
consensus_14470#2 ------------------------------------------------------------
consensus_14470#1 ------------------------------------------------------------
consensus_14470#3 ------------------------------------------------------------
consensus_14470#0 ATCTCACGAGCAGAGCAGGAGTAGGGAGCAGGAGCAGGGGAGGGGGGCGCCGTCGTCGGG 300
consensus_14470#2 ------------------------------------------------------------
consensus_14470#1 ------------------------------------------------------------
consensus_14470#3 ------------------------------------------------------------
consensus_14470#0 CTGAGTCCCGAACTTTAGCACAAGTTGTACTAGAGAAGATATACATCTCCTTGTGCTGTA 360
consensus_14470#2 ------------------------------------------------------------
consensus_14470#1 ------------------------------------------------------------
consensus_14470#3 ------------------------------------------------------------
consensus_14470#0 CTCTGTTTTGGTATGGAGGAAGATTCTGGTAGATCAATATCAACAACTGGTTTTCTTAGA 420
consensus_14470#2 ------------------------------------------------------------
consensus_14470#1 ------------------------------------------------------------
consensus_14470#3 ------------------------------------------------------------
consensus_14470#0 AGAGGCTCTAGTGTCTCCTTAAAAGATCAAGGCAATGAGGAGAGGCCAAACAAGACAAAA 480
consensus_14470#2 ------------------------------------------------------------
consensus_14470#1 ------------------------------------------------------------
consensus_14470#3 ------------------------------------------------------------
consensus_14470#0 CTCAACCCAATGAATGCCAGGTGGGCTGACAGTAAGGAGAAGCCAAGATATTTACGTGAG 540
consensus_14470#2 ------------------------------------------------------------
consensus_14470#1 ------------------------------------------------------------
consensus_14470#3 ------------------------------------------------------------
consensus_14470#0 CCATTTCGTTCATCAGGCACTAAGGCTGCATGTCCAAGCTCTTCAAAAGCTCCCGTCAGA 600
consensus_14470#2 ------------------------------------------------------------
consensus_14470#1 ------------------------------------------------------------
consensus_14470#3 ------------------------------------------------------------
consensus_14470#0 AAATATTTCGAGGAAAAACAAGGACGGACATTTTTAGGAGAGGCAGATAATGCAGAAAGT 660
consensus_14470#2 ------------------------------------------------------------
consensus_14470#1 ------------------------------------------------------------
consensus_14470#3 ------------------------------------------------------------
consensus_14470#0 AGTAGCAGAAGAACTGAGGCCAACCGTCTGCAGTGTAGCAAGAAAGCTGTTGTTGAGGAG 720
consensus_14470#2 ------------------------------------------------------------
consensus_14470#1 ------------------------------------------------------------
consensus_14470#3 ------------------------------------------------------------
consensus_14470#0 GATGTGCATCCATATGGTCAGCAGGATGAGCCAGAAGATTTGTTGTCCACATCAACTACT 780
consensus_14470#2 ------------------------------------------------------------
consensus_14470#1 ------------------------------------------------------------
consensus_14470#3 ------------------------------------------------------------
consensus_14470#0 GAAGATCAGCCTGCAGAACTTGATCCTGAACTATTAGATTCTTCTGTTTCTTCAGGGGTG 840
consensus_14470#2 ------------------------------------------------------------
consensus_14470#1 ------------------------------------------------------------
consensus_14470#3 ------------------------------------------------------------
consensus_14470#0 TCTGCACATGCAATTGGTTCTGTAGTCAGAAATGCTGCTTTGAGATCTAAATCACGTCAG 900
consensus_14470#2 ------------------------------------------------------------
consensus_14470#1 ------------------------------------------------------------
consensus_14470#3 ------------------------------------------------------------
consensus_14470#0 CAGAAGGGTAAAGAAGAATTGTGTCAGATTAGACCTCAAACTGCTTCTGCTTTTGTTAAT 960
consensus_14470#2 ------------------------------------------------------------
consensus_14470#1 ------------------------------------------------------------
consensus_14470#3 ------------------------------------------------------------
consensus_14470#0 CGGTCCACTATACCTCGAAATTCTACCAATGGTGTGAAATCATCAAATGCTGCTGGCCCT 1020
consensus_14470#2 ------------------------------------------------------------
consensus_14470#1 ------------------------------------------------------------
consensus_14470#3 ------------------------------------------------------------
consensus_14470#0 GGGGTACAGAGACGTACTCTAAAAAACCTTGGCTGCACATCAATATCTGATGTTTTGCCT 1080
consensus_14470#2 ------------------------------------------------------------
consensus_14470#1 ------------------------------------------------------------
consensus_14470#3 ------------------------------------------------------------
consensus_14470#0 TCTGGCTGTTCTTCAGCTAATTCTATTCATAATAAGAGGGCTGAGGTTATGAGAAACAGG 1140
consensus_14470#2 ------------------------------------------------------------
consensus_14470#1 ------------------------------------------------------------
consensus_14470#3 ------------------------------------------------------------
consensus_14470#0 GCATTTGACGGAGAGAGTTCTTCTAGACCAAGGGGCTTAAATGGACACTCTAGTTTAGGC 1200
consensus_14470#2 ------------------------------------------------------------
consensus_14470#1 ------------------------------------------------------------
consensus_14470#3 ------------------------------------------------------------
consensus_14470#0 CATTCACCTGCCATGTATTCTGGTATCACTGGTCCTAGAGTCAGAACTGCTGAACAATCA 1260
consensus_14470#2 ------------------------------------------------------------
consensus_14470#1 ------------------------------------------------------------
consensus_14470#3 ------------------------------------------------------------
consensus_14470#0 GCTTCTCAGCAAACACGGACTAGTAGCAGAAGTATTCAGGAGTCTGCAGATTCTTCAAGG 1320
consensus_14470#2 ------------------------------------------------------------
consensus_14470#1 ------------------------------------------------------------
consensus_14470#3 ------------------------------------------------------------
consensus_14470#0 ATTAGGCGACCTTCTACTCAGCATGCCAGAGTAAGGGTGCCAAATGAAAGGGAGGATAGC 1380
consensus_14470#2 ------------------------------------------------------------
consensus_14470#1 ------------------------------------------------------------
consensus_14470#3 ------------------------------------------------------------
consensus_14470#0 GTGTTTGCTCTTCGTGAAACTCTTGCAAGGGATCGCCAACCAGAATGGGCTCATTTCTCC 1440
consensus_14470#2 ------------------------------------------------------------
consensus_14470#1 -------------------GGAGATCGATGAGGCCTTTTTCTATGGAATTACCACATGAG 41
consensus_14470#3 ------------------------------------------------------------
consensus_14470#0 TTGGGTGAAGCTGCCCCACGGAGATCGATGAGGCCTTTTTCTATGGAATTACCACATGAG 1500
consensus_14470#2 ------------------------------------------------------------
consensus_14470#1 ATATACTCATCTAGTCGTCAAGGCTCAAGTAATCAGACAGCAAGGAGCAGATCAAGTTAC 101
consensus_14470#3 ------------------------------------------------------------
consensus_14470#0 ATATACTCATCTAGTCGTCAAGGCTCAAGTAATCAGACAGCAAGGAGCAGATCAAGTTAC 1560
consensus_14470#2 ------------------------------------------------------------
consensus_14470#1 CGCCCTGACGAAAGCCCTCCACAAATGTTTCATGGTTTGCTGGTGGAGAGAGAGAACTAC 161
consensus_14470#3 ------------------------------------------------------------
consensus_14470#0 CGCCCTGACGAAAGCCCTCCACAAATGTTTCATGGTTTGCTGGTGGAGAGAGAGAACTAC 1620
consensus_14470#2 ------------------------------------------------------------
consensus_14470#1 AGGCGTATAAACATGGAAGGCATCGCTGAGGTGTTGCTAGCATTGGACAGGATTGAACAA 221
consensus_14470#3 ------------------------------------------------------------
consensus_14470#0 AGGCGTATAAACATGGAAGGCATCGCTGAGGTGTTGCTAGCATTGGACAGGATTGAACAA 1680
consensus_14470#2 ------------------------------------------------------------
consensus_14470#1 GATGATGAATTGACTTATGAGCAATTGCTGGTGCTAGAAACTAACTTGTTTCTTAGCGGC 281
consensus_14470#3 ------------------------------------------------------------
consensus_14470#0 GATGATGAATTGACTTATGAGCAATTGCTGGTGCTAGAAACTAACTTGTTTCTTAGCGGC 1740
consensus_14470#2 ------------------------------------------------------------
consensus_14470#1 CTTGGCCTGCATGACCAGCACAGAGATATGAGAATGGATATTGACAACATGTCTTATGAG 341
consensus_14470#3 ------------------------------------------------------------
consensus_14470#0 CTTGGCCTGCATGACCAGCACAGAGATATGAGAATGGATATTGACAACATGTCTTATGAG 1800
consensus_14470#2 ------------------------------------------------------------
consensus_14470#1 GAACTATTAGCACTAGAGGAGCGAATCGGTTCTGTCAGCACTGCCCTATCTGATGAGCAG 401
consensus_14470#3 ------------------------------------------------------------
consensus_14470#0 GAACTATTAGCACTAGAGGAGCGAATCGGTTCTGTCAGCACTGCCCTATCTGATGAGCAG 1860
consensus_14470#2 ------------------------------------------------------------
consensus_14470#1 CTTGTGAAGTGTCTCAAGCGAAATGTGTATAAGTTACCAAATTCA--GATCTTGAAGCGA 459
consensus_14470#3 ------------------------------------------------------------
consensus_14470#0 CTTGTGAAGTGTCTCAAGCGAAATGTGTATAAGTTACCAAATTCA--GATCTTGAAGCGA 1918
consensus_14470#2 ----------------GGTCGTCGCCGCCGNCGCCGCCGCCTTCGCCGCCGTTTGGTCTC 44
consensus_14470#1 ACAGAGCTGTACTAGATGACGCCAAGTGCAGCA-TATGTCAGGAGGAATACATT-GAGGG 517
consensus_14470#3 ---------------ACCCCTCATAGCACAGCAATATCTCCGGAGGAATACCTTTGAGGT 45
consensus_14470#0 ACAGAGCTGTACTAGATGACGCCAAGTGCAGCA-TATGTCAGGAGGAATACATT-GAGGG 1976
consensus_14470#2 GTCGCCTTCCGGACCACCCGCACTAGCCCTTCTCCCTNCTNGCGCGCGCACGCAGNACGG 104
* ** * * * * * ** * *
consensus_14470#1 CGAAGAA-GTTGGTAGGATGCAG--TGTGAGCATCAATACCATGTGTCCTGCATTCATGA 574
consensus_14470#3 CCGAAGA-ATTGGTAGGATCCCAGCTGTGAGCATCAATACCATGTGTCCTGCATTCATGA 104
consensus_14470#0 CGAAGAA-GTTGGTAGGATGCAG--TGTGAGCATCAATACCATGTGTCCTGCATTCATGA 2033
consensus_14470#2 CCGACGACGACGAGCAGGTTTGGAGGGCCGACGCCGACGCGGCGG---CTGCCTTTACGG 161
* * * * * * * * * * * * **** ** * *
consensus_14470#1 ATGGCTTAGACAGAAGAACTGGTGTCCAATATGCAAAACTTCAGCAATACCTTCAGAGAT 634
consensus_14470#3 ATGGCTTAGACAGAAGAACTGGTGTCCAATATCCAAA-CTTCA-CAATACCTTCAGAGAT 162
consensus_14470#0 ATGGCTTAGACAGAAGAACTGGTGTCCAATATGCAAAACTTCAGCAATACCTTCAGAGAT 2093
consensus_14470#2 GTNCCGTCGTCTCTGCGGCGGCTG-CGATTATACCA--TCTCACGAG------CAGAGAG 212
* * * * * * * ** * * *** * * *** * ******
consensus_14470#1 GGACA-AGGGGGGCACATGAATATAGGTTGTTCAAGC-TCGTAAATATTATAAATTTATA 692
consensus_14470#3 GGACACAGGGGGGCACATGAATATAGGTTGTTCAAGC-TC-TAAATATTATAAATTTATA 220
consensus_14470#0 GGACA-AGGGGGGCACATGAATATAGGTTGTTCAAGC-TCGTAAATATTATAAATTTATA 2151
consensus_14470#2 GAGTAGGGAGCAGGAGCAGGNNAGGGGANGCGCCGTCGTCGGGCTGAGTCCGAACTTTTA 272
* * * * * * * * ** * * * ** * * ** ** **
consensus_14470#1 ATG-AAACAGTG-TTAGACATGCTAGACGGTGACTCAATTCACTCAAATTTGTGAATA-A 749
consensus_14470#3 ATG-AAACAGTG-TTAGACATGCTAGACACTGACTCA-TTCACTCAAATTTGTGAATATG 277
consensus_14470#0 ATG-AAACAGTG-TTAGACATGCTAGACACTGACTCAATTCACTCAAATTTGTGAATATG 2209
consensus_14470#2 GCACAAGTTGTACTTAGAGAAGATATACATCTNCTTG--TGCTTGTACTNTGTTTTTGTA 330
** ** ***** * * ** ** ** * * * * *** *
consensus_14470#1 ACATAAAAGG-------------------------------------------------- 759
consensus_14470#3 ATATATTGCTTTCTTCTTGGAAAAAAAAAA------------------------------ 307
consensus_14470#0 ATAGATTGCTTTCTTCTTGGAAACTCCTGTACATTTTTGTTTCGGTATCCGGTCCAAATT 2269
consensus_14470#2 TTGAGGAAGATTCTTGTAGATCAATAT--------------------------------- 357
consensus_14470#1 ------------------------------------------------------------
consensus_14470#3 ------------------------------------------------------------
consensus_14470#0 ACACATCACCTGCCATCAGATAATGAGACCAGAGGACCCTTGGGAAAAATTCCTGCTTGA 2329
consensus_14470#2 ------------------------------------------------------------
consensus_14470#1 ------------------------------------------------------------
consensus_14470#3 ------------------------------------------------------------
consensus_14470#0 TTGGACTTATGGTTACAATAATTAAAATTCTGCTCGATTGGAGTGTTAGTAAAAATTCAT 2389
consensus_14470#2 ------------------------------------------------------------
consensus_14470#1 ------------------------------------------------------------
consensus_14470#3 ------------------------------------------------------------
consensus_14470#0 TCACTTTGGCCCCAACCACATATTAGATTTGCAATTACTGATTTGGTGTCCAGTGTTTCA 2449
consensus_14470#2 ------------------------------------------------------------
consensus_14470#1 ------------------------------------------------------------
consensus_14470#3 ------------------------------------------------------------
consensus_14470#0 GGTGCTTTGTAGCCTGGTTTGAGTTTGGAGTGTTCGTAAGGTGTTATCTGTTGGGTTGGT 2509
consensus_14470#2 ------------------------------------------------------------
consensus_14470#1 ------------------------------------------------------------
consensus_14470#3 ------------------------------------------------------------
consensus_14470#0 ACTCGGATGTGTACTCTTCCTTGGGTATCAATGTAATAAGGCAAAGCTTTTGCCTTTGTC 2569
consensus_14470#2 ------------------------------------------------------------
consensus_14470#1 ----------------------------------------------------------
consensus_14470#3 ----------------------------------------------------------
consensus_14470#0 TCAAAAAAAGGATTTGCAATTTCCTTGATCTTAATGAAATTTGGTCAGCACCCTTTCG 2627
consensus_14470#2 ----------------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||