cluster # 14480

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Oryza sativa
cluster # 14480 cluster # 14480 Sequences # 16 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_14480#0 length = 1589 sequences # 15

consensus_14480#1 length = 422 sequences # 1

consensusID : consensus_14480#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 15
consensus length = 1589
fasta sequence

                              [TGGACTGAAGGAGTAGAAAACGTCTCCACGCCGTCGTCGTCGACCTCACCGGCGGCTGCCTCCCTACCCCCACCTACTCCGGCGGCGGCGCGGCGGAGAAGCACATCACATCATGGCTCCTCCTCCGCACTCGGACTCTGACCTGCTCAAGCCGAGAGACGTCTGCATCGTGGGCGTCGCCCGCACGCCCATCGGCGCCCTGCTCGGCTCCCTCTCCTCCCTCCCCGCCACCAAGCTCGGCTCCGTCGCCATCCAGGCCGCTCTCAGGAGAGCAAATGTGGAGCCGGCGCTCGTGCAGGAGGTCTTCATGGGGAACGTTCTCAGCGCCAACCTTGGCCAAGCCCCGGCGAGGCAAGCCGCCCTAGGCGCCGGCTTGCCCGACACTGTGCCCTGCACCACCGTCAACAAAGTTTGCTCCTCGGGGATGAAGGCTGTCATGCTTGCGGCGCAGACTATTCAGCTTGGGATGCATGATGTTGTTGTCGCTGGTGGGATGGAGAGCATGTCCAATGCCCCCAAATATGTCGCGGCAGCAAGACGGGGGTCACGGTTTGGGCACGACGTCCTCATCGATGGGATGCTCAAGGATGGGCTGTGGGATGTGTATAATGATTTCCCAATGGGAATGTGTGCCGAGTTGTGTGCGGATCAACACTCCATTTCAAGGGAGGAGCAGGATCTTTATGCTATCCAGAGCAATGAACGTGCAATAGCAGCTCGTGATAGCGGCACATTTTCTTGGGAAATTGCTCCGGTTGAAATTTCTTCCGGTAGAGGGAAACCACCACTTATTGTTGACAAGGATGAGAGTCTTGCAAAGTTCAATTCAGCGAAGCTGAGGAAACTTGGGCCGACTTTCAAGAAGAATGGTTCTGTAACTGCCGGCAATTCTTCTAGTATAAGTGATGGTGCTGCTGCAATCGTGCTAGTCAGTGGACAGAAAGCCAAGAGTCTTGGCCTTCAAGTTATTGCAAGGATCAGAGGGTATGCGGATGCTGCTCAGGCACCTGAATTATTTACAACTACTCCAGCTCTTGCTATTCCAAAGGCTGTATCAAATGCGGGTCTCCAAACTTCACAAATAGATTATTATGAGATAAACGAAGCTTTCTCCGTCGTTGCTTTAG-CCAACCAGAAGCTTCTTGGTATTCCTTCGGGAAAGCTTAACCTAAGTGGTGGTGGTGTTTCTCTGGGCCATCCTATTGGTTGCAGTGGTGCGAGAATCATAGTCACTTTGCTCGGGATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCATGCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAAATAGCACAAAGCTGAACTGTAAAGTACAGTAGCTCTATGTTTTCATCTTATATTACTTAATTTTACTGGGCGTTCATCCATGATGTACAATGATAGAAGGAACGTTGTAAAAATAAGATGGCTGTGCACTACCGCACGAGTCTTGTATAACTTGTATAGCGGCCATAGCAATAATAAGGGAAAAGAAGGCCAGAGGAATAAAAAAAAAA]

[+] EMBL CF328374             [TGGACTGAAGGAGTAGAAAACGTCTCC CGCTGTCGTCGTCGACCTCACCGGCGGCTGCCTCCCTACCCCCACCTACTCCGGCGGCGGCGCGGCGGAGAAGCACATCACATCATGGCTCCTCCTCCGCACTCGGACTCTGACCTGCTCAAGCCGAGAGACGTCTGCATCGTGGGCGTCGCCCGCACGCCCATCGGCGCCCTGCTCGGCTCCCTCTCCTCCCTCCCCGCCACCAAGCTCGGCTCCGTCGCCATCCAGGCCGCTCTCAGGAGAGCAAATGTGGAGCCGGCGCTCGTGCAGGAGGTCTTCATGGGGAACGTTCTCAGCGCCAACCTTGGCCAAGCCCCGGCGAGGCAAGCCGCCCTAGGCGCCGGCTTGCCCGACACTGTGCCCTGCACCACCGTCAACAAAGTTTGCTCCTCGGGGATGAAGGCTGTCATGCTTGCGGCGCAGACTATTCAGCTTGGGATGCATGATGTTGTTGTCGCTGGTGGGATGGAGAGCATGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CB645757             [           acctcccctCGACTCCACGCCGTCGTCGTCGACCTCACCGGCGGCTGCCTCCCTACCCCCACCTACTCCGGCGGCGGCGCGGCGGAGAAGCACATCACATCATGGCTCCTCCTCCGCACTCGGACTCTGACCTGCTCAAGCCGAGAGACGTCTGCATCGTGGGCGTCGCCCGCACGCCCATCGGCGCCCTGCTCGGCTCCCTCTCCTCCCTCCCCGCCACCAAGCTCGGCTCCGTCGCCATCCAGGCCGCTCTCAGGAGAGCAAATGTGGAGCCGGCGCTCGTGCAGGAGGTCTTCATGGGGAACGTTCTCAGCGCCAACCTTGGCCAAGCCCCGGCGAGGCAAGCCGCCCTAGGCGCCGGCTTGCCCGACACTGTGCCCTGCACCACCGTCAACAAAGTTTGCTCCTCGGGGATGAAGGCTGTCATGCTTGCGGCGCAGACTATTCAGCTTGGGATGCATGATGTTGTTGTCGCTGGTGGGATGGAGAGCATGTCCAATGCCCCCAAATATGTCGCGGCAGCAAGACGGGGGTCACGGTTTGGGCACGACGTCCTCATCGATGGGATGCTCAAGGATGGGCTGTGGGATGTGTATAATGATTTCCCAATGGGAATGTGTGCCGAGTTGTGTGCGGATCAACACTCCATTTCAAGGGAGGAGCAGGATCTTTATGCTATCCAGAGCAATGAACGTGCAATAGCAGCTCGTGATAGCGGCACATTTTCTTGGGAAATTGCTCCGGATGAAATTTCTTCCGGTAGAGGGAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AK101017             [                      TCTCCACGCCGTCGTCGTCGACCTCACCGGCGGCTGCCTCCCTACCCCCACCTACTCCGGCGGCGGCGCGGCGGAGAAGCACATCACATCATGGCTCCTCCTCCGCACTCGGACTCTGACCTGCTCAAGCCGAGAGACGTCTGCATCGTGGGCGTCGCCCGCACGCCCATCGGCGCCCTGCTCGGCTCCCTCTCCTCCCTCCCCGCCACCAAGCTCGGCTCCGTCGCCATCCAGGCCGCTCTCAGGAGAGCAAATGTGGAGCCGGCGCTCGTGCAGGAGGTCTTCATGGGGAACGTTCTCAGCGCCAACCTTGGCCAAGCCCCGGCGAGGCAAGCCGCCCTAGGCGCCGGCTTGCCCGACACTGTGCCCTGCGCCACCGTCAACAAAGTTTGCTCCTCGGGGATGAAGGCTGTCATGCTTGCGGCGCAGGCTATTCAGCTTGGGATGCATGATGTTGTTGTCGCTGGTGGGATGGAGAGCATGTCCAATGCCCCCAAATATGTCGCGGCAGCAAGACGGGGGTCACGGTTTGGGCACGACGTCCTCATCGATGGGATGCTCAAGGATGGGCTGTGGGATGTGTATAATGATTTCCCAATGGGAATGTGTGCCGAGTTGTGTGCGGATCAACACTCCATTTCAAGGGAGGAGCAGGATCTTTATGCTATCCAGAGCAATGAACGTGCAATAGCAGCTCGTGATAGCGGCACATTTTCTTGGGAAATTGCTCCGGTTGAAATTTCTTCCGGTAGAGGGAAACCACCACTTATTGTTGACAAGGATGAGAGTCTTGCAAAGTTCAATTCAGCGAAGCTGAGGAAACTTGGGCCGACTTTCAAGAAGAATGGTTCTGTAACTGCCGGCAATTCTTCTAGTATAAGTGATGGTGCTGCTGCAATCGTGCTAGTCAGTGGACAGAAAGCCAAGAGTCTTGGCCTTCAAGTTATTGCAAGGATCAGAGGGTATGCGGATGCTGCTCAGGCACCTGAATTATTTACAACTACTCCAGCTCTTGCTATTCCAAAGGCTGTATCAAATGCGGGTCTCCAAACTTCACAAATAGATTATTATGAGATAAACGAAGCTTTCTCCGTCGTTGCTTTAG CCAACCAGAAGCTTCTTGGTATTCCTTCGGGAAAGCTTAACCTAAGTGGTGGTGGTGTTTCTCTGGGCCATCCTATTGGTTGCAGTGGTGCGAGAATCATAGTCACTTTGCTCGGGATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCATGCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAAATAGCACAAAGCTGAACTGTAAAGTACAGTAGCTCTATGTTTTCATCTTATATTACTTAATTTTACTGGGCGTTCATCCATGATGTACAATGATAGAAGGAACGTTGTAAAAATAAGATGGCTGTGCACTACCGCACGAGTCTTGTATAACTTGTATAGCGGCCATAGCAATAATAAGGGA                            ]
[+] EMBL AK103194             [                           ACGCCGTCGTCGTCGACCTCACCGGCGGCTGCCTCCCTACCCCCACCTACTCCGGCGGCGGCGCGGCGGAGAAGCACATCACATCATGGCTCCTCCTCCGCACTCGGACTCTGACCTGCTCAAGCCGAGAGACGTCTGCATCGTGGGCGTCGCCCGCACGCCCATCGGCGCCCTGCTCGGCTCCCTCTCCTCCCTCCCCGCCACCAAGCTCGGCTCCGTCGCCATCCAGGCCGCTCTCAGGAGAGCAAATGTGGAGCCGGCGCTCGTGCAGGAGGTCTTCATGGGGAACGTTCTCAGCGCCAACCTTGGCCAAGCCCCGGCGAGGCAAGCCGCCCTAGGCGCCGGCTTGCCCGACACTGTGCCCTGCACCACCGTCAACAAAGTTTGCTCCTCGGGGATGAAGGCTGTCATGCTTGCGGCGCAGACTATTCAGCTTGGGATGCATGATGTTGTTGTCGCTGGTGGGATGGAGAGCATGTCCAATGCCCCCAAATATGTCGCGGCAGCAAGACGGGGGTCACGGTTTGGGCACGACGTCCTCATCGATGGGATGCTCAAGGATGGGCTGTGGGATGTGTATAATGATTTCCCAATGGGAATGTGTGCCGAGTTGTGTGCGGATCAACACTCCATTTCAAGGGAGGAGCAGGATCTTTATGCTATCCAGAGCAATGAACGTGCAATAGCAGCTCGTGATAGCGGCACATTTTCTTGGGAAATTGCTCCGGTTGAAATTTCTTCCGGTAGAGGGAAACCACCACTTATTGTTGACAAGGATGAGAGTCTTGCAAAGTTCAATTCAGCGAAGCTGAGGAAACTTGGGCCGACTTTCAAGAAGAATGGTTCTGTAACTGCCGGCAATTCTTCTAGTATAAGTGATGGTGCTGCTGCAATCGTGCTAGTCAGTGGACAGAAAGCCAAGAGTCTTGGCCTTCAAGTTATTGCAAGGATCAGAGGGTATGCGGATGCTGCTCAGGCACCTGAATTATTTACAACTACTCCAGCTCTTGCTATTCCAAAGGCTGTATCAAATGCGGGTCTCCAAACTTCACAAATAGATTATTATGAGATAAACGAAGCTTTCTCCGTCGTTGCTTTAG CCAACCAGAAGCTTCTTGGTATTCCTTCGGGAAAGCTTAACCTAAGTGGTGGTGGTGTTTCTCTGGGCCATCCTATTGGTTGCAGTGGTGCGAGAATCATAGTCACTTTGCTCGGGATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCATGCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAAATAGCACAAAGCTGAACTGTAAAGTACAGTAGCTCTATGTTTTCATCTTATATTACTTAATTTTACTGGGCGTTCATCCATGATGTACAATGATAGAAGGAACGTTGTAAAAATAAGATGGCTGTGCACTACCGCACGAGTCTTGTATAACTTGTATAGCGGCCATAGCAATAATAAGGGAAAAGAAGGCCAGAGGAATAc        ]
[+] EMBL OSC103941            [                                   GTCGTCGACCTCACCGGCGGNTGCCTCCCTACCCCCACCTACTCCGGCGGCGGCGCGGCGGAGAAGCACATCACATCATGGCTCCTCCTCCGCACTCGGACTCTGACCTGCTCAAGCCGAGAGACGTCTGCATCGTGGGCGTCGCCCGCACGCCCATCGGCGCCCTGCTCGGCTCCCTCTCCTCCCTCCCCGCCACCAAGCTCGGCTCCGTCGCCATCCAGGCCGCTCTCAGGAGAGCAAATGTGGAGCCGGCGCTCGTGCAGGAGGTCTTCATGGGGAACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CB671591             [                                       TCGACCTCACCGGCGGCTGCCTCCCTACCCCCACCTACTCCGGCGGCGGCGCGGCGGAGAAGCACATCACATCATGGCTCCTCCTCCGCACTCGGACTCTGACCTGCTCAAGCCGAGAGACGTCTGCATCGTGGGCGTCGCCCGCACGCCCATCGGCGCCCTGCTCGGCTCCCTCTCCTCCCTCCCCGCCACCAAGCTCGGCTCCGTCGCCATCCAGGCCGCTCTCAGGAGAGCAAATGTGGAGCCGGCGCTCGTGCAGGAGGTCTTCATGGGGAACGTTCTCAGCGCCAACCTTGGCCAAGCCCCGGCGAGGCAAGCCGCCCTAGGCGCCGGCTTGCCCGACACTGTGCCCTGCACCACCGTCAACAAAGTTTGCTCCTCGGGGATGAAGGCTGTCATGCTTGCGGCGCAGACTATTCAGCTTGGGATGCATGATGTTGTTGTCGCTGGTGGGATGGAGAGCATGTCCAATGCCCCCAAATATGTCGCGGCAGCAAGACGGGGGTCACGGTTTGGGCACGACGTCCTCATCGATGGGATGCTCAAGGATGGGCTGTGGGATGTGTATAATGATTTCCCAATGGGAATGTGTGCCGAGTTGTGTGCGGATCAACACTCCATTTCAAGGGAGGAGCAGGATCTTTATGCTATCCAGAGCAATGAACGTGCAATAGCAGCTCGTGATAGCGGCACATTTTCTTGGGAAATTGCTCCGGTTGAAATTTCTTCCGGTAGAGGGAAACCACCACTTATTGTTGACAAGGATGAGAGTCTTGCAAAGTTCAATTCAGCGAAGCTGATGAAACTTGGGCCGACTTTC AGAAGAATGGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CB639966             [                                                  GGCGGCTGCCTCCCTACCCCCACCTACTCCGGCGGCGGCGCGGCGGAGAAGCACATCACATCATGGCTCCTCCTCCGCACTCGGACTCTGACCTGCTCAAGCCGAGAGACGTCTGCATCGTGGGCGTCGCCCGCACTCCCATCGGCGCCCTGCTCTGCTCCCTCTCCTCCCTCCCCGCCACCAAGCTCGGCTCCGTCGCCATCCAGGCCGCTCTCAGGAGAGCAAATGTGGAGCCGGCGCTCGTGCAGGAGGTCTTCATGGGGAACGTTCTCAGCGCCAACCTTGGCCAAGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CB646206             [                                                                                             CGGAGAAGCACATCACATCATGGCTCCTCCTCCGCACTCGGACTCTGACCTGCTCAAGCCGAGAGACGTCTGCATCGTGGGCGTCGCCCGCACGCCCATCGGCGCCCTGCTCGGCTCCCTCTCCTCCCTCCCCGCCACCAAGCTCGGCTCCGTCGCCATCCAGGCCGCTCTCAGGAGAGCAAATGTGGAGCCGGCGCTCGTGCAGGAGGTCTTCATGGGGAACGTTCTCAGCGCCAACCTTGGCCAAGCCCCGGCGAGGCAAGCCGCCCTAGGCGCCGGCTTGCCCGACACTGTGCCCTGCACCACCGTCAACAAAGTTTGCTCCTCGGGGATGAAGGCTGTCATGCTTGCGGCGCAGACTATTCAGCTTGGGATGCATGATGTTGTTGTCGCTGGTGGGATGGAGAGCATGTCCAATGCCCCCAAATATGTCGCGGCAGCAAGACGGGGGTCACGGTTTGGGCACGACGTCCTCATCGATGGGATGCTCAAGGATGGGCTGTGGGATGTGTATAATGATTTCCCAATGGGAATGTGTGCCGAGTTGTGTGCGGATCAACACTCCATTTCAAGGGAGGAGCAGGATCTTTATGCTATCCAGAGCAATGAACGTGCAATAGCAGCTCGTGATAGCGGCACATTTTCTTGGGAAATTGCTCCGGTTGAAATTTCTTCCGGTAGAGGGAAACCACCACTTATTGTTGACAAGGATGAGAGTCTTGCAAAGTTCAATTCAGCGAAGCTGAGGAAACTTGGGCCGACTTTCAAGAAGAATGGTTCTGTAACTGCCGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL OSR10441A            [                                                                                                                                                                                                                                                                                                                                                                                                                                  TCGGGGATGAAGGCTGTCATGCTTGCGGCGCAGACTATTCAGCTTGGGATGCATGATGTTGTTGTCGCTGGTGGGATGGAGAGCATGTCCAATGCCCCCAAATATGTCGCGNCAGCAAGACGGGGGTCACGGTTTGGGCACGACGTCCTCATCGATGGGATGCTCAAGGATGGGCTGTGGGATGTGTATAATGATTTCCCAATGGGAATGTGTGCCGAGTTGTGTGCGGATCAACACTCCATTTCAAGGGAGGAGCAGGATCTTTATGCTATCCAGAGCAATGNACGTGCAATAGCAGCTCGTGATAGCGGCACATTTTCTTGGGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL OSR0826A             [                                                                                                                                                                                                                                                                                                                                                                                                                                  TCGGGGATGAAGGCTGTCATGCTTGCGGCGCAGACTATTCAGCTTGGGATGCATGATGTTGTTGTCGCTGGTGGGATGGAGAGCATGTCCAATGCCCCCAAATATGTCGCGGCAGCAAGACGGGGGTCACGGTTTGGGCACGACGTCCTCATCGATGGGATGCTCAAGGATGGGCTGTGGGATGTGTATAATGATTTCCCAATGGGAATGTGTGCCGAGTTGTGTGCGGATCAACACTCCATTTCAAGGGAGGAGCAGGATCTTTATGCTATCCAGAGCAATGAACGTGCAATAGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CB671592             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AATTTGCTCCGGTTGAAATTTCTTCCGGTAGAGGGAAACCACCACTTATTGTTGACAAGGATGAGAGTCTTGCAAAGTTCAATTCAGCGAAGCTGAGGAAACTTGGGCCGACTTTCAAGAAGAATGGTTCTGTAACTGCCGGCAATTCTTCTAGTATAAGTGATGGTGCTGCTGCAATCGTGCTAGTCAGTGGACAGAAAGCCAAGAGTCTTGGCCTTCAAGTTATTGCAAGGATCAGAGGGTATGCGGATGCTGCTCAGGCACCTGAATTATTTACAACTACTCCAGCTCTTGCTATTCCAAAGGCTGTATCAAATGCGGGTCTCCAAACTTCACAAATAGATTATTATGAGATAAACGAAGCTTTCTCCGTCGTTGCTTTAG CCAACCAGAAGCTTCTTGGTATTCCTTCGGGAAAGCTTAACCTAAGTGGTGGTGGTGTTTCTCTGGGCCATCCTATTGGTTGCAGTGGTGCGAGAATCATAGTCACTTTGCTCGGGATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCATGCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAAATAGCACAAAGCTGAACTGTAAAGTACAGTAGCTCTATGTTTTCATCTTATATTACTTAATTTTACTGGGCGTTCATCCATGATGTACAATGATAGAAGGAACGTTGTAAAAATAAGATGGCTGTGCACTACCGCACGAGTCTTGTATAACTTGTATAGCGGCCATAGCAATAATAAGGGAAAAGAAGGCC                  ]
[-] EMBL CB645758             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      AGAGTCTTGCAAAGTTCAATTCAGCGAAGCTGAGGAAACTTGGGCCGACTTTCAAGAAGAATGGTTCTGTAACTGCCGGCAATTCTTCTAGTATAAGTGATGGTGCTGCTGCAATCGTGCTAGTCAGTGGACAGAAAGCCAAGAGTCTTGGCCTTCAAGTTATTGCAAGGATCAGAGGGTATGCGGATGCTGCTCAGGCACCTGAATTATTTACAACTACTCCAGCTCTTGCTATTCCAAAGGCTGTATCAAATGCGGGTCTCCAAACTTCACAAATAGATTATTATGAGATAAACGAAGCTTTCTCCGTCGTTGCTTTAG CCAACCAGAAGCTTCTTGGTATTCCTTCGGGAAAGCTTAACCTAAGTGGTGGTGGTGTTTCTCTGGGCCATCCTATTGGTTGCAGTGGTGCGAGAATCATAGTCACTTTGCTCGGGATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCATGCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAAATAGCACAAAGCTGAACTGTAAAGTACAGTAGCTCTATGTTTTCATCTTATATTACTTAATTTTACTGGGCGTTCATCCATGATGTACAATGATAGAAGGAACGTTGTAAAAATAAGATGGCTGTGCACTACCGCACGAGTCTTGTATAACTTGTATAGCGGCCATAGCAATAATAAGGGAAAAGAAGGC                   ]
[-] EMBL CB646207             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AATTCAGCGAAGCTGAGGAAACTTGGGCCGACTTTCAAGAAGAATGGTTCTGTAACTGCCGGCAATTCTTCTAGTATAAGTGATGGTGCTGCTGCAATCGTGCTAGTCAGTGGACAGAAAGCCAAGAGTCTTGGCCTTCAAGTTATTGCAAGGATCAGAGGGTATGCGGATGCTGCTCAGGCACCTGAATTATTTACAACTACTCCAGCTCTTGCTATTCCAAAGGCTGTATCAAATGCGGGTCTCCAAACTTCACAAATAGATTATTATGAGATAAACGAAGCTTTCTCCGTCGTTGCTTTAG CCAACCAGAAGCTTCTTGGTATTCCTTCGGGAAAGCTTAACCTAAGTGGTGGTGGTGTTTCTCTGGGCCATCCTATTGGTTGCAGTGGTGCGAGAATCATAGTCACTTTGCTCGGGATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCATGCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAAATAGCACAAAGCTGAACTGTAAAGTACAGTAGCTCTATGTTTTCATCTTATATTACTTAATTTTACTGGGCGTTCATCCATGATGTACAATGATAGAAGGAACGTTGTAAAAATAAGATGGCTGTGCACTACCGCACGAGTCTTGTATAACTTGTATAGCGGCCATAGCAATAATAAGGGAAAA                         ]
[+] EMBL AU162398             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AAACTTCACAAATAGATTATTATGAGATAAACGAAGCTTTCTCCGTCGTTGCTTTAGCCCAACCAGAAGCTNCTTGGTATNCCTTCGGGAAAGCTTANCCTAAGTGGTGGTGGTGTTTCTCTGGGCCATCCTATTGGTTGCAGTGNTGCGAGAATCATAGTCA TTTGCTCGGGATTCTTAGACATAAAAATGGNAAGATTGGGGTTGCTGGAGTTTGCAATGGNGGTGGTGGTGCTTCTGCCCTTGTTGTGGAANTCATGCAACCATCACTATTTACACGTTCCNCGTTGTGAAGTTGGCGCGAGCNAAAATAGCACAAAGCTGAACTGTAAAGTACAGTAGCTCTATGTTTTCATCTTATATTACTTAATTTTACTGGGCGTTCATCCATGATGTACAATGATAGAAGGAACGTTGTAAAAATAAGATGGCTGTGCACTACCGCACGAGTCTTGTATAACTTGTATAGCGGCCATAGCAATAATAAGGGAAAAGAAGGCCAGAGGAAAAAAAA     ]
[+] EMBL BQ907752             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GTT CAGTGGTGCGAGAATCATAGTCACTTTGCTCGGGATTCTTAGACATAAAAATGGAAAGATT GGGTTGCTGGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCATGCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAAATAGCACAAAGCTGAACTGTAAAGTACAGTAGCTCTATGTTTTCATCTTATATTACTTAATTTTACTGGGCGTTCATCCATGATGTAC ATGATAGAAGGAACGTTGTAAAAATAAGATGGCTGTGCACTACCGCACGAGTCTTGTATAACTTGTATAGCGGCCATAGC ATAATAAGGGAAAAGAAGGCCATAGGAATAAAAAAAAAA]




>consensus_14480#0
TGGACTGAAGGAGTAGAAAACGTCTCCACGCCGTCGTCGTCGACCTCACCGGCGGCTGCC
TCCCTACCCCCACCTACTCCGGCGGCGGCGCGGCGGAGAAGCACATCACATCATGGCTCC
TCCTCCGCACTCGGACTCTGACCTGCTCAAGCCGAGAGACGTCTGCATCGTGGGCGTCGC
CCGCACGCCCATCGGCGCCCTGCTCGGCTCCCTCTCCTCCCTCCCCGCCACCAAGCTCGG
CTCCGTCGCCATCCAGGCCGCTCTCAGGAGAGCAAATGTGGAGCCGGCGCTCGTGCAGGA
GGTCTTCATGGGGAACGTTCTCAGCGCCAACCTTGGCCAAGCCCCGGCGAGGCAAGCCGC
CCTAGGCGCCGGCTTGCCCGACACTGTGCCCTGCACCACCGTCAACAAAGTTTGCTCCTC
GGGGATGAAGGCTGTCATGCTTGCGGCGCAGACTATTCAGCTTGGGATGCATGATGTTGT
TGTCGCTGGTGGGATGGAGAGCATGTCCAATGCCCCCAAATATGTCGCGGCAGCAAGACG
GGGGTCACGGTTTGGGCACGACGTCCTCATCGATGGGATGCTCAAGGATGGGCTGTGGGA
TGTGTATAATGATTTCCCAATGGGAATGTGTGCCGAGTTGTGTGCGGATCAACACTCCAT
TTCAAGGGAGGAGCAGGATCTTTATGCTATCCAGAGCAATGAACGTGCAATAGCAGCTCG
TGATAGCGGCACATTTTCTTGGGAAATTGCTCCGGTTGAAATTTCTTCCGGTAGAGGGAA
ACCACCACTTATTGTTGACAAGGATGAGAGTCTTGCAAAGTTCAATTCAGCGAAGCTGAG
GAAACTTGGGCCGACTTTCAAGAAGAATGGTTCTGTAACTGCCGGCAATTCTTCTAGTAT
AAGTGATGGTGCTGCTGCAATCGTGCTAGTCAGTGGACAGAAAGCCAAGAGTCTTGGCCT
TCAAGTTATTGCAAGGATCAGAGGGTATGCGGATGCTGCTCAGGCACCTGAATTATTTAC
AACTACTCCAGCTCTTGCTATTCCAAAGGCTGTATCAAATGCGGGTCTCCAAACTTCACA
AATAGATTATTATGAGATAAACGAAGCTTTCTCCGTCGTTGCTTTAGCCAACCAGAAGCT
TCTTGGTATTCCTTCGGGAAAGCTTAACCTAAGTGGTGGTGGTGTTTCTCTGGGCCATCC
TATTGGTTGCAGTGGTGCGAGAATCATAGTCACTTTGCTCGGGATTCTTAGACATAAAAA
TGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGT
GGAACTCATGCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAA
ATAGCACAAAGCTGAACTGTAAAGTACAGTAGCTCTATGTTTTCATCTTATATTACTTAA
TTTTACTGGGCGTTCATCCATGATGTACAATGATAGAAGGAACGTTGTAAAAATAAGATG
GCTGTGCACTACCGCACGAGTCTTGTATAACTTGTATAGCGGCCATAGCAATAATAAGGG
AAAAGAAGGCCAGAGGAATAAAAAAAAAA

consensusID : consensus_14480#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 422
fasta sequence

                              [ATCATAGTCACTTTGCTCGGGATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCATTATCTGACTTGATGCAGGCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAAATAGCACAAAGCTGAACTGTAAAGTACAGTAGCTCTATGTTTTCATCTTATATTACTTAATTTTACTGGGCGTTCATCCATGATGTACAATGATAGAAGGAACGTTGTAAAAATAAGATGGCTGTGCACTACCGCACGAGTCTTGTATAACTTGTATAGCGGCCATAGCAATAATAAGGGAAAAGAAGGCCAGAGGAATACTTTGCATTCTCTTGATGCTTGATAACTCTTCAACAGTAATCAAAAA]

[+] EMBL AU222493             [ATCATAGTCACTTTGCTCGGGATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCATTATCTGACTTGATGCAGGCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAAATAGCACAAAGCTGAACTGTAAAGTACAGTAGCTCTATGTTTTCATCTTATATTACTTAATTTTACTGGGCGTTCATCCATGATGTACAATGATAGAAGGAACGTTGTAAAAATAAGATGGCTGTGCACTACCGCACGAGTCTTGTATAACTTGTATAGCGGCCATAGCAATAATAAGGGAAAAGAAGGCCAGAGGAATACTTTGCATTCTCTTGATGCTTGATAACTCTTCAACAGTAATCAAAAA]




>consensus_14480#1
ATCATAGTCACTTTGCTCGGGATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGA
GTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCATTATCTGACTTGAT
GCAGGCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAAATAGC
ACAAAGCTGAACTGTAAAGTACAGTAGCTCTATGTTTTCATCTTATATTACTTAATTTTA
CTGGGCGTTCATCCATGATGTACAATGATAGAAGGAACGTTGTAAAAATAAGATGGCTGT
GCACTACCGCACGAGTCTTGTATAACTTGTATAGCGGCCATAGCAATAATAAGGGAAAAG
AAGGCCAGAGGAATACTTTGCATTCTCTTGATGCTTGATAACTCTTCAACAGTAATCAAA
AA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14480#0      TGGACTGAAGGAGTAGAAAACGTCTCCACGCCGTCGTCGTCGACCTCACCGGCGGCTGCC 60
consensus_14480#1      ------------------------------------------------------------
                                                                                   

consensus_14480#0      TCCCTACCCCCACCTACTCCGGCGGCGGCGCGGCGGAGAAGCACATCACATCATGGCTCC 120
consensus_14480#1      ------------------------------------------------------------
                                                                                   

consensus_14480#0      TCCTCCGCACTCGGACTCTGACCTGCTCAAGCCGAGAGACGTCTGCATCGTGGGCGTCGC 180
consensus_14480#1      ------------------------------------------------------------
                                                                                   

consensus_14480#0      CCGCACGCCCATCGGCGCCCTGCTCGGCTCCCTCTCCTCCCTCCCCGCCACCAAGCTCGG 240
consensus_14480#1      ------------------------------------------------------------
                                                                                   

consensus_14480#0      CTCCGTCGCCATCCAGGCCGCTCTCAGGAGAGCAAATGTGGAGCCGGCGCTCGTGCAGGA 300
consensus_14480#1      ------------------------------------------------------------
                                                                                   

consensus_14480#0      GGTCTTCATGGGGAACGTTCTCAGCGCCAACCTTGGCCAAGCCCCGGCGAGGCAAGCCGC 360
consensus_14480#1      ------------------------------------------------------------
                                                                                   

consensus_14480#0      CCTAGGCGCCGGCTTGCCCGACACTGTGCCCTGCACCACCGTCAACAAAGTTTGCTCCTC 420
consensus_14480#1      ------------------------------------------------------------
                                                                                   

consensus_14480#0      GGGGATGAAGGCTGTCATGCTTGCGGCGCAGACTATTCAGCTTGGGATGCATGATGTTGT 480
consensus_14480#1      ------------------------------------------------------------
                                                                                   

consensus_14480#0      TGTCGCTGGTGGGATGGAGAGCATGTCCAATGCCCCCAAATATGTCGCGGCAGCAAGACG 540
consensus_14480#1      ------------------------------------------------------------
                                                                                   

consensus_14480#0      GGGGTCACGGTTTGGGCACGACGTCCTCATCGATGGGATGCTCAAGGATGGGCTGTGGGA 600
consensus_14480#1      ------------------------------------------------------------
                                                                                   

consensus_14480#0      TGTGTATAATGATTTCCCAATGGGAATGTGTGCCGAGTTGTGTGCGGATCAACACTCCAT 660
consensus_14480#1      ------------------------------------------------------------
                                                                                   

consensus_14480#0      TTCAAGGGAGGAGCAGGATCTTTATGCTATCCAGAGCAATGAACGTGCAATAGCAGCTCG 720
consensus_14480#1      ------------------------------------------------------------
                                                                                   

consensus_14480#0      TGATAGCGGCACATTTTCTTGGGAAATTGCTCCGGTTGAAATTTCTTCCGGTAGAGGGAA 780
consensus_14480#1      ------------------------------------------------------------
                                                                                   

consensus_14480#0      ACCACCACTTATTGTTGACAAGGATGAGAGTCTTGCAAAGTTCAATTCAGCGAAGCTGAG 840
consensus_14480#1      ------------------------------------------------------------
                                                                                   

consensus_14480#0      GAAACTTGGGCCGACTTTCAAGAAGAATGGTTCTGTAACTGCCGGCAATTCTTCTAGTAT 900
consensus_14480#1      ------------------------------------------------------------
                                                                                   

consensus_14480#0      AAGTGATGGTGCTGCTGCAATCGTGCTAGTCAGTGGACAGAAAGCCAAGAGTCTTGGCCT 960
consensus_14480#1      ------------------------------------------------------------
                                                                                   

consensus_14480#0      TCAAGTTATTGCAAGGATCAGAGGGTATGCGGATGCTGCTCAGGCACCTGAATTATTTAC 1020
consensus_14480#1      ------------------------------------------------------------
                                                                                   

consensus_14480#0      AACTACTCCAGCTCTTGCTATTCCAAAGGCTGTATCAAATGCGGGTCTCCAAACTTCACA 1080
consensus_14480#1      ------------------------------------------------------------
                                                                                   

consensus_14480#0      AATAGATTATTATGAGATAAACGAAGCTTTCTCCGTCGTTGCTTTAGCCAACCAGAAGCT 1140
consensus_14480#1      ------------------------------------------------------------
                                                                                   

consensus_14480#0      TCTTGGTATTCCTTCGGGAAAGCTTAACCTAAGTGGTGGTGGTGTTTCTCTGGGCCATCC 1200
consensus_14480#1      ------------------------------------------------------------
                                                                                   

consensus_14480#0      TATTGGTTGCAGTGGTGCGAGAATCATAGTCACTTTGCTCGGGATTCTTAGACATAAAAA 1260
consensus_14480#1      ----------------------ATCATAGTCACTTTGCTCGGGATTCTTAGACATAAAAA 38
                                             **************************************

consensus_14480#0      TGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGT 1320
consensus_14480#1      TGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGT 98
                       ************************************************************

consensus_14480#0      GGAACTCAT-----------------GCAACCATCACTATTTACACGTTCCTCGTTGTGA 1363
consensus_14480#1      GGAACTCATTATCTGACTTGATGCAGGCAACCATCACTATTTACACGTTCCTCGTTGTGA 158
                       *********                 **********************************

consensus_14480#0      AGTTGGCGCGAGCAAAAATAGCACAAAGCTGAACTGTAAAGTACAGTAGCTCTATGTTTT 1423
consensus_14480#1      AGTTGGCGCGAGCAAAAATAGCACAAAGCTGAACTGTAAAGTACAGTAGCTCTATGTTTT 218
                       ************************************************************

consensus_14480#0      CATCTTATATTACTTAATTTTACTGGGCGTTCATCCATGATGTACAATGATAGAAGGAAC 1483
consensus_14480#1      CATCTTATATTACTTAATTTTACTGGGCGTTCATCCATGATGTACAATGATAGAAGGAAC 278
                       ************************************************************

consensus_14480#0      GTTGTAAAAATAAGATGGCTGTGCACTACCGCACGAGTCTTGTATAACTTGTATAGCGGC 1543
consensus_14480#1      GTTGTAAAAATAAGATGGCTGTGCACTACCGCACGAGTCTTGTATAACTTGTATAGCGGC 338
                       ************************************************************

consensus_14480#0      CATAGCAATAATAAGGGAAAAGAAGGCCAGAGGAATAAAAAAAAAA-------------- 1589
consensus_14480#1      CATAGCAATAATAAGGGAAAAGAAGGCCAGAGGAATACTTTGCATTCTCTTGATGCTTGA 398
                       *************************************      *                

consensus_14480#0      ------------------------
consensus_14480#1      TAACTCTTCAACAGTAATCAAAAA 422