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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14481#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1417 fasta sequence
[TTGGCATCTTCCCGAGACAAGAAAACCAAAAAGGAGAAGTCAATTGATGACGCGCTAACTCCAGAACAACCAGCCAAAGTTCACAGGGAACCATCTTCAGATCCTGTCCGGAAGAGTAGGAGGATTGCTAAGAAATCCATCTTGGACAGTGAATTAGATGAGGACTATGATACAAATGTTCTTGATGATTTTGGAACTTCTGAAGGTGTGGAAGTCCATACTCGTGAGCCTGCAAAAAAAACAGGAAGTAGCTCTAAGAAGAATGCTGCAAAGAAAGCTAAAACTAAGAGCACATCATACGAGATCGATAATGATTTTGTTACCTCCAGATCAAAAAGGGATGGCAATAAAAGGTCTAGGGAATCTACTGATGCTGATAATAGTGAAGAGGAACCTACATCTGACAGTGAGCTTGATGCACAAAACAGGAAGCAGAAAGCAGTCACTGAATCACCTGCTAATGTAAGAAGCGAGCCTCTGACAACACGTCGCCGTGCCCTTCAATCATGGATGGATGGAAACAGCAACAGTGCTATTGAGTTCCCTGATGGTTTGCCACCAGCTCCTTCAAGAGGCAAGAAGGATAAGCTTTCTGATGCGGAAATGCTTGCCAAGAAGGCAGAGGCTGCTCAGCGGCGCAAGATGCAAGTCGAGAAGGCTACTAAAGAAAGCGAGGCTGAAGCTATAAGGAAAATTTTGGGCCTGGATTCTGAGAAGAAGAAAGAAGAAAGAAAGCAAAAGGAGCGAGAAGATAAGGAGAGAGCAGCCAGAGCACAAACTATTCCTGAAAACACCATCAGGTGGGTCATGGGCCCAAAGGGCACCGTGGTTTCATTCCCGGAAGAAGTAGGCCTTCCCAGCATCTTCAACTCCAAGCCTTGCAACTACCCTCCCCCGCGAGAGAAATGTGCCGGACCATCATGCACGAACGCATACCGGTATAGGGACTCCAAGCTGAATCTCCCTCTCTGCAGCCTGAAATGCTACAAAGCCGTCAATGGCAACGCTTGATTGACGGGACGCTCGGGCCGTGCCTATTTCCCGGTTTCGC-AATCAACTCTGATCTATAAT-GTTCCCTCAAGAAAGCATTCTCGTCTATATACTGGTGGAAATAAGATAGGATGATCATCAGCCGCGGAGATGCACATTTTTGGTTGAGTTGATAGAAAGATACAGCTGTCCAATAAGTGCATATACATGTGTATCATGTATGCATATTTACATACATATAGATTTGTCAACCTGTTTTCAGGGCTTGTGAGCAGATGTACTGCTGCTGCCCTCTGATACCTGTATTGCAGATAGTAGACATATACACATATGAAGGAGCAGAAATG-TAGAATAAGTTGTTGTACCAAAAAAACTTGTGTTTGTTCACTTCTTCATTCAGTTTATGCACACACTCGGCCATCATGTC]
[+] EMBL AK063760 [TTGGCATCTTCCCGAGACAAGAAAACCAAAAAGGAGAAGTCAATTGATGACGCGCTAACTCCAGAACAACCAGCCAAAGTTCACAGGGAACCATCTTCAGATCCTGTCCGGAAGAGTAGGAGGATTGCTAAGAAATCCATCTTGGACAGTGAATTAGATGAGGACTATGATACAAATGTTCTTGATGATTTTGGAACTTCTGAAGGTGTGGAAGTCCATACTCGTGAGCCTGCAAAAAAAACAGGAAGTAGCTCTAAGAAGAATGCTGCAAAGAAAGCTAAAACTAAGAGCACATCATACGAGATCGATAATGATTTTGTTACCTCCAGATCAAAAAGGGATGGCAATAAAAGGTCTAGGGAATCTACTGATGCTGATAATAGTGAAGAGGAACCTACATCTGACAGTGAGCTTGATGCACAAAACAGGAAGCAGAAAGCAGTCACTGAATCACCTGCTAATGTAAGAAGCGAGCCTCTGACAACACGTCGCCGTGCCCTTCAATCATGGATGGATGGAAACAGCAACAGTGCTATTGAGTTCCCTGATGGTTTGCCACCAGCTCCTTCAAGAGGCAAGAAGGATAAGCTTTCTGATGCGGAAATGCTTGCCAAGAAGGCAGAGGCTGCTCAGCGGCGCAAGATGCAAGTCGAGAAGGCTACTAAAGAAAGCGAGGCTGAAGCTATAAGGAAAATTTTGGGCCTGGATTCTGGGAAGAAGAAAGAAGAAAGAAAGCAAAAGGAGCGAGAAGATAAGGAGAGAGCAGCCAGAGCACAAACTATTCCTGAAAACACCATCAGGTGGGTCATGGGCCCAAAGGGCACCGTGGTTTCATTCCCGGAAGAAGTAGGCCTTCCCAGCATCTTCAACTCCAAGCCTTGCAACTACCCTCCCCCGCGAGAGAAATGTGCCGGACCATCATGCACGAACGCATACCGGTATAGGGACTCCAAGCTGAATCTCCCCCTCTGCAGCCTGAAATGCTACAAAGCCGTCAATGGCAACGCTTGATTGACGGGACGCTCGGGCCGTGCCTATTTCCCGGTTTCGC AATCAACTCTGATCTATAAT GTTCCCTCAAGAAAGCATTCTCGTCTATATACTGGTGGAAATAAGATAGGATGATCATCAGCCGCGGAGATGCACATTTTTGGTTGAGTTGATAGAAAGATACAGCTGTCCAATAAGTGCATATACATGTGTATCATGTATGCATATTTACATACATATAGATTTGTCAACCTGTTTTCAGGGCTTGTGAGCAGATGTACTGCTGCTGCCCTCTGATACCTGTATTGCAGATAGTAGACATATACACATATGAAGGAGCAGAAATG TAGAATAAGTTGTTGTACCAAAGTTCCTTGTGTTTGTTCACTTCTTCATTCAGTTTATGCACACACTCGGCCATCATGTC]
[+] EMBL CB666535 [ AAACAGGAAGTAGCTCTAAGAAGAATGCTGCAAAGAAAGCTAAAACTAAGAGCACATCATACGAGATCGATAATGATTTTGTTACCTCCAGATCAAAAAGGGATGGCAATAAAAGGTCTAGGGAATCTACTGATGCTGATAATAGTGAAGAGGAACCTACATCTGACAGTGAGCTTGATGCACAAAACAGGAAGCAGAAAGCAGTCACTGAATCACCTGCTAATGTAAGAAGCGAGCCTCTGACAACACGTCGCCGTGCCCTTCAATCATGGATGGATGGAAACAGCAACAGTGCTATTGAGTTCCCTGATGGTTTGCCACCAGCTCCTTCAAGAGGCAAGAAGGATAAGCTTTCTGATGCGGAAATGCTTGCCAAGAAGGCAGAGGCTGCTCAGCGGCGCAAGATGCAAGTCGAGAAGGCTACTAAAGAAAGCGAGGCTGAAGCTATAAGGAAAATTTTGGGCCTGGATTCTGAGAAGAAGAAAGAAGAAAGAAAGCAAAAGGAGCGAGAAGATAAGGAGAGAGCAGCCAGAGCACAAACTATTCCTGAAAACACCATCAGGTGGGTCATGGGCCCAAAGGGCACCGTGGTTTCATTCCCGGAAGAAGTAGGCCTTCCCAGCATCTTCAACTCCAAGCCTTGCAACTACCCTCCCCCGCGAGAGAAATGTGCCGGACCATCATGCACGAACGCATACCGGTATAGGGACTCCAAGCTGAATCTCCCTCTCTGCAGCCTGAAATGCTACAAAGCCGTCAATGGCAACGCTTGATTGACGGGACGCTCGGGCCGTGCCTATTTCCCGGTTTCGCAAATC ACTCTGATCTATAATGGTCCCCTC AGAAAGCATTCTCG ]
[+] EMBL CB666537 [ AAACAGGAAGTAGCTCTAAGAAGAATGCTGCAAAGAAAGCTAAAACTAAGAGCACATCATACGAGATCGATAATGATTTTGTTACCTCCAGATCAAAAAGGGATGGCAATAAAAGGTCTAGGGAATCTACTGATGCTGATAATAGTGAAGAGGAACCTACATCTGACAGTGAGCTTGATGCACAAAACAGGAAGCAGAAAGCAGTCACTGAATCACCTGCTAATGTAAGAAGCGAGCCTCTGACAACACGTCGCCGTGCCCTTCAATCATGGATGGATGGAAACAGCAACAGTGCTATTGAGTTCCCTGATGGTTTGCCACCAGCTCCTTCAAGAGGCAAGAAGGATAAGCTTTCTGATGCGGAAATGCTTGCCAAGAAGGCAGAGGCTGCTCAGCGGCGCAAGATGCAAGTCGAGAAGGCTACTAAAGAAAGCGAGGCTGAAGCTATAAGGAAAATTTTGGGCCTGGATTCTGAGAAGAAGAAAGAAGAAAGAAAGCAAAAGGAGCGAGAAGATAAGGAGAGAGCAGCCAGAGCACAAACTATTCCTGAAAACACCATCAGGTGGGTCATGGGCCCAAAGGGCACCGTGGTTTCATTCCCGGAAGAAGTAGGCCTTCCCAGCATCTTCAACTCCAAGCCTTGCAACTACCCTCCCCCGCGAGAGAAATGTGCCGGACCATCATGCACGAACGCATACCGGTATAGGGACTCCAAGCTGAATCTCCCTCTCTGCAGCCTGAAATGCTACAAAGCCGTCAATGGCAACGCTTGATTGACGGGACGCTCGGGCCGTGCCTATTTCCCGGTTTCGC AATCAACTCTGA ]
[-] EMBL CB666538 [ TGGTTTGCCACCAGCTCCTTCAAGAGGCAAGAAGGATAAGCTTTTTGATGCGGAAATGCTTGCCAAGAAGGCAGAGGCTGCTCAGCGGCGCAAGATGCAAGTCGAGAAGGCTACTAAAGAAAGCGAGGCTGAAGCTATAAGGAAAATTTTGGGCCTGGATTCTGAGAAGAAGAAAGAAGAAAGAAAGCAAAAGGAGCGAGAAGATAAGGAGAGAGCAGCCAGAGCACAAACTATTCCTGAAAACACCATCAGGTGGGTCATGGGCCCAAAGGGCACCGTGGTTTCATTCCCGGAAGAAGTAGGCCTTCCCAGCATTTTCAACTCCAAGCCTTGCAAGTACCCTCCCCCGCGAGAGAAATGTGCCGGACCATCATGCACGAACGCATACCGGTATAGGGACTCCAAGATGAATCTCCCTCTCTGCAGCCTGAAATGCTACAAAGCCGTCAATGGCAACGCTTGATTGACGGGACGCTCGGGCCGTGCCTATTTCCCGGTTTCGC AATCAACTCTGATTTATAAT GTTCCCTCAAGAAAGCATTTTTGTCTATATACTGGTGGAAATAAGATAGGATGATCATCAGCCGCGGAGATGCACATTTTTGGTTGAGTTGATAGAAAGATACAGCTGTCCAATAAGTGCATATACATGTGTATCATGTATGCATATTTACATACATATAGATTTGTCAACCTGTTTTCAGGGCTTGTGAGCAGATGTACTGCTGCTGCCCTCTGATACCTGTATTGCAGATAGTAGACATATCCTCAAAGGGAGGAGCAGAAATG TAGAATAAGTTGTTGTCCCTTAAAg ]
[+] EMBL CF322896 [ CTTGAAGAGGCTATAAGGATAACCTTTCTGATGCGGAAATGCTTGCCAACAAGGCACAGGCTGCTCAGCGGCGCAAGATGCTAGTCGAGAAGGCTACTAAAGAAAGCGAGGCTGAAGCTATAAGGAAAATTTTGGGCCTGGATTCTGAGAAGAAGAAAGAAGAAAGAAAGCAAAAGGAGCGAGAAGATAAGGAGAGAGCAGCCAGAGCACAAACTATTCCTGAAAACACCATCAGGTGGGTCATGGGCCCAAAGGGCACCGTGGTTTCATTCCCGGAAGAAGTAGGCCTTCCCAGCATCTTCAACTCCAAGCCTTGCAACTACCCTCCCCCGCGAGAGAAATGTGCCGGACCATCATGCACGAACGCATACCGGTATAGGGACTCCAAGCTGAATCTCCCTCTCTGCAGCCTGAAATGCTACAAAGCCGTCAATGGCAACGCTTGATTGACGGGACGCTCGGGCCGTGCCTATTTCCCGGTTTCGC AATCAACTCTGATCTATAAT GTTCCCTCAAGAGAGCATTCTCGTCTATATACT ]
[-] EMBL CB650607 [ TAAGCTTTCTGATGCGGAAATGCTTGCCAAGAAGGCAGAGGCTGCTCAGCGGCGCAAGATGCAAGTCGAGAAGGCTACTAAAGAAAGCGAGGCTGAAGCTATAAGGAAAATTTTGGGCCTGGATTCTGAGAAGAAGAAAGAAGAAAGAAAGCAAAAGGAGCGAGAAGATAAGGAGAGAGCAGCCAGAGCACAAACTATTCCTGAAAACACCATCAGGTGGGTCATGGGCCCAAAGGGCACCGTGGTTTCATTCCCGGAAGAAGTAGGCCTTCCCAGCATCTTCAACTCCAAGCCTTGCAACTACCCTCCCCCGCGAGAGAAATGTGCCGGACCATCATGCACGAACGCATACCGGTATAGGGACTCCAAGCTGAATCTCCCTCTCTGCAGCCTGAAATGCTACAAAGCCGTCAATGGCAACGCTTGATTGACGGGACGCTCGGGCCGTGCCTATTTCCCGGTTTCGC AATCAACTCTGATCTATAAT GTTCCCTCAAGAAAGCATTCTCGTCTATATACTGGTGGAAATAAGATAGGATGATCATCAGCCGCGGAGATGCACATTTTTGGTTGAGTTGATAGAAAGATACAGCTGTCCAATAAGTGCATATACATGTGTATCATGTATGCATATTTACATACATATAGATTTGTCAACCTGTTTTCAGGGCTTGTGAGCAGATGTACTGCTGCTGCCCTCTGATACCTGTATTGCAGATAGTAGACATATACACATAGGAAGGAGCAGAAATG TAGAATAAGTTG TGTAC ]
[-] EMBL CB629816 [ CTTTCTGATGCGGAAATGCTTGCCAAGAAGGCAGAGGCTGCTCAGCGGCGCAAGATGCAAGTCGAGAAGGCTACTAAAGAAAGCGAGGCTGAAGCTATAAGGAAAATTTTGGGCCTGGATTCTGAGAAGAAGAAAGAAGAAAGAAAGCAAAAGGAGCGAGAAGATAAGGAGAGAGCAGCCAGAGCACAAACTATTCCTGAAAACACCATCAGGTGGGTCATGGGCCCAAAGGGCACCGTGGTTTCATTCCCGGAAGAAGTAGGCCTTCCCAGCATCTTCAACTCCAAGCCTTGCAACTACCCTCCCCCGCGAGAGAAATGTGCCGGACCATCATGCACGAACGCATACCGGTATAGGGACTCCAAGCTGAATCTCCCTCTCTGCAGCCTGAAATGCTACAAAGCCGTCAATGGCAACGCTTGATTGACGGGACGCTCGGGCCGTGCCTATTTCCCGGTTTCGC AATCAACTCTGATCTATAAT GTTCCCTCAAGAAAGCATTCTCGTCTATATACTGGTGGAAATAAGATAGGATGATCATCAGCCGCGGAGATGCACATTTTTGGTTGAGTTGATAGAAAGATACAGCTGTCCAATAAGTGCATATACATGTGTATCATGTATGCATATTTACATACATATAGATTTGTCAACCTGTTTTCAGGGCTTGTGAACAGATGTACTGCTGCTGCCCTCTGATATCTGTATTGCAGATAGTAGACATATACACATATGAAAGGGCAGAAATG TAGAATAAGT ]
[+] EMBL CF303140 [ TTTCTGATGCGGAAATGCTTGCCAAGAAGGCAGAGGCTGCTCAGCGGCGCAAGATGCAAGTCGAGAAGGCTACTAAAGAAAGCGAGGCTGAAGCTATAAGGAAAATTTTGGGCCTGGATTCTGAGAAGAAGAAAGAAGAAAGAAAGCAAAAGGAGCGAGAAGATAAGGAGAGAGCAGCCAGAGCACAAACTATTCCTGAAAACACCATCAGGTGGGTCATGGGCCCAAAGGGCACCGTGGTTTCATTCCCGGAAGAAGTAGGCCTTCCCAGCATCTTCAACTCCAAGCCTTGCAACTACCCTCCCCCGCGAGAGAAATGTGCCGGACCATCATGCACGAACGCATACCGGTATAGGGACTCCAAGCTGAATCTCCCTCTCTGCAGCCTGAAATGCTACAAAGCCGTCAATGGCAACGCTTGATTGACGGGACGCTCGGGCCGTGCCTATTTCCCGGTTTCGC AATCAACTCTGATCTATAAT GTTCCCTCAAGAAAGCATTCTCGTCTATATACTGGTGGAAATAAGATAGGATGATCATCAGCCGCGGAGATGCACATTTTTGGTTGAGTTGATAGAAAGATACAGCTGTCCAATAAGTGCATATACATGTGTATCATGTATGCATATT ]
[+] EMBL CF304138 [ TTTCTGATGCGGAAATGCTTGCCAAGAAGGCAGAGGCTGCTCAGCGGCGCAAGATGCAAGTCGAGAAGGCTACTAAAGAAAGCGAGGCTGAAGCTATAAGGAAAATTTTGGGCCTGGATTCTGAGAAGAAGAAAGAAGAAAGAAAGCAAAAGGAGCGAGAAGATAAGGAGAGAGCAGCCAGAGCACAAACTATTCCTGAAAACACCATCAGGTGGGTCATGGGCCCAAAGGGCACCGTGGTTTCATTCCCGGAAGAAGTAGGCCTTCCCAGCATCTTCAACTCCAAGCCTTGCAACTACCCTCCCCCGCGAGAGAAATGTGCCGGACCATCATGCACGAACGCATACCGGTATAGGGACTCCAAGCTGAATCTCCCTCTCTGCAGCCTGAAATGCTACAAAGCCGTCAATGGCAACGCTTGATTGACGGGACGCTCGGGCCGTGCCTATTTCCCGGTTTCGC AATCAACTCTGATCTATAAT GTTCCCTCAAGAAAGCATTCTCGTCTATATACTGGTGGAAATAAGATAGGATGATCATCAGCCGCGGAGATGCACATTTTTGGTTGAGTTGATAGAAAGATACAGCTGTCCAATAAGTGCATATACATGTGT ]
[-] EMBL CB668282 [ AAGAAGGCAGAGGCTGCTCAGCGGCGCAAGATGCAAGTCGAGAAGGCTACTAAAGAAAGCGAGGCTGAAGCTATAAGGAAAATTTTGGGCCTGGATTCTGAGAAGAAGAAAGAAGAAAGAAAGCAAAAGGAGCGAGAAGATAAGGAGAGAGCAGCCAGAGCACAAACTATTCCTGAAAACACCATCAGGTGGGTCATGGGCCCAAAGGGCACCGTGGTTTCATTCCCGGAAGAAGTAGGCCTTCCCAGCATCTTCAACTCCAAGCCTTGCAACTACCCTCCCCCGCGAGAGAAATGTGCCGGACCATCATGCACGAACGCATACCGGTATAGGGACTCCAAGCTGAATCTCCCTCTCTGCAGCCTGAAATGCTACAAAGCCGTCAATGGCAACGCTTGATTGACGGGACGCTCGGGCCGTGCCTATTTCCCGGTTTCGC AATCAACTCTGATCTATAAT GTTCCCTCAAGAAAGCATTCTCGTCTATATACTGGTGGAAATAAGATAGGATGATCATCAGCCGCGGAGATGCACATTTTTGGTTGAGTTGATAGAAAGATACAGCTGTCCAATAAGTGCATATACATGTGTATCATGTATGCATATTTACATACATATAGATTTGTCAACCTGTTTTCAGGGCTTGTGAGCAGATGTACTGCTGCTGCCCTCTGATACCTGTATTGCAGATAGTAGACATATACACATATGGAGGAGCAGAAATG TAGAATAAGTTG TGTAC ]
[-] EMBL CB666536 [ GGCTGCTCAGCGGCGCAAGATGCAAGTCGAGAAGGCTACTAAAGAAAGCGAGGCTGAAGCTATAAGGAAAATTTTGGGCCTGGATTCTGAGAAGAAGAAAGAAGAAAGAAAGCAAAAGGAGCGAGAAGATAAGGAGAGAGCAGCCAGAGCACAAACTATTCCTGAAAACACCATCAGGTGGGTCATGGGCCCAAAGGGCACCGTGGTTTCATTCCCGGAAGAAGTAGGCCTTCCCAGCATCTTCAACTCCAAGCCTTGCAACTACCCTCCCCCGCGAGAGAAATGTGCCGGACCATCATGCACGAACGCATACCGGTATAGGGACTCCAAGCTGAATCTCCCTCTCTGCAGCCTGAAATGCTACAAAGCCGTCAATGGCAACGCTTGATTGACGGGACGCTCGGGCCGTGCCTATTTCCCGGTTTCGC AATCAACTCTGATCTATAAT GTTCCCTCAAGAAAGCATTCTCGTCTATATACTGGTGGAAATAAGATAGGATGATCATCAGCCGCGGAGATGCACATTTTTGGTTGAGTTGATAGAAAGATACAGCTGTCCAATAAGTGCATATACATGTGTATCATGTATGCATATTTACATACATATAGATTTGTCAACCTGTTTTCAGGGCTTGTGAGCAGATGTACTGCTGCTGCCCTCTGATACCTGTATTGCAGATAGTAGACATATACACATATGAAGGAGCAGAAATG TAGAATAAGTTGTTGTACCAAAAAAAaaga ]
[+] EMBL BM421969 [ CCTTGCAACTACCCTCCCCCGCGAGAGAAATGTGCCGGACCATCATGCACGAACGCATACCGGTATAGGGACTCCAAGCTGAATCTCCCTCTCTGCAGCCTGAAATGCTAC AAGCCGTCAATGGCAACGCTTGATTGACGGGACGCTCGGGCCGTGCCTATTTCCCGGTTTCGC AATCAACTCTGATCTATAAT GTTCCCTCAAGAAAGCATTCTCGTCTATATACTGGTGGAAATAAGATAGGATGATCATCAGCCGCGGAGATGCACATTTTTGGTTGAGTTGATAGAAAGATACAGCTGTCCCATAAGTGCATATACATGTGTATCATGTATGCATATTTACATACATATAGATTTGTCAACCTGTTTTCAGGGCTTGTGAGCAGATGTACTGCTGCTGCCCTCTGATACCTGTATTGCAGATAGTAGACATATACACATATGAAGGAGCAGACATGCTAGAATAAGTTGTTGTACCAAAAAAA ]
[+] EMBL BM037974 [ ATGTGCCGGACCATCATGCACGAACGCATACCGGTATAGGGACTCCAAGCTGAATCTCCCTCTCTGCAGCCTGAAATGCTACAAAGCCGTCAATGGCAACGCTTGATTGACGGGACGCTCGGGCCGTGCCTATTTCCCGGTTTCGC AATCAACTCTGATCTATAAT GTTCCCTCAAG AAGCATTCTCGTCTATATACTGGTGGAAATAAGATAGGATGATCATCAGCCGCGGAGATGCACATTTTTGGTTGAGTTGATAGAAAGATACAGCTGTCC ATAAGTGCATATACATGTGTATCATGTATGCATATTTACATACATATAGATTTGTCAACCTGTTTTCAGGGCTTGTGAGCAGATGTACTGCTGCTGCCCTCTGATACCTGTATTGCAGATAGTAGACATATACACATATGAAGGAGCAGAAATG TAGAATAAGTTGTTGTA AAAAAAA ]
consensusID : consensus_14481#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 705 fasta sequence
[CGAGGGCTCAGCGGCGCAAGATGCAAGTCGAGAAGGCTACTAAAGAAAGCGAGGCTGAAGCTATAAGGAAAATTTTGGGCCTGGATTCTGAGAAGAAGAAAGAAGAAAGAAAGCAAAAGGAGCGAGAAGATAAGGTTTATTGCATCATTCGATCATGCTGTTTTTGTACCCTTATTTTCTCTAATGCGTTTTAGTACCCTTATCAATAATAGTACCCTTATCAATGTATCTTCTGCTACTAGCTTCTGAACTAGACTCTTACTTCCCCCTTCCAGGAGAGAGCAGCCAGAGCACAAACTATTCCTGAAAACACCATCAGGTGGGTCATGGGCCCAAAGGGCACCGTGGTTTCATTCCCGGAAGAAGTAGGCCTTCCCAGCATCTTCAACTCCAAGCCTTGCAACTACCCTCCCCCGCGAGAGAAATGTGCCGGACCATCATGCACGAACGCATACCGGTATAGGGACTCCAAGCTGAATCTCCCTCTCTGCAGCCTGAAATGCTACAAAGCCGTCAATGGCAACGCTTGATTGACGGGACGCTCGGGCCGTGCCTATTTCCCGGTTTCGCAATCAACTCTGATCTATAATGTTCCCTCAAGAAAGCATTCTCGTCTATATACTGGTGGAAATAAGATAGGATGATCATCAGCCGCGGAGATGCACATCTTTGGTTGAGTTGATAGAAAGATACAGCTGTCCAATA]
[+] EMBL CB000579 [CGAGGGCTCAGCGGCGCAAGATGCAAGTCGAGAAGGCTACTAAAGAAAGCGAGGCTGAAGCTATAAGGAAAATTTTGGGCCTGGATTCTGAGAAGAAGAAAGAAGAAAGAAAGCAAAAGGAGCGAGAAGATAAGGTTTATTGCATCATTCGATCATGCTGTTTTTGTACCCTTATTTTCTCTAATGCGTTTTAGTACCCTTATCAATAATAGTACCCTTATCAATGTATCTTCTGCTACTAGCTTCTGAACTAGACTCTTACTTCCCCCTTCCAGGAGAGAGCAGCCAGAGCACAAACTATTCCTGAAAACACCATCAGGTGGGTCATGGGCCCAAAGGGCACCGTGGTTTCATTCCCGGAAGAAGTAGGCCTTCCCAGCATCTTCAACTCCAAGCCTTGCAACTACCCTCCCCCGCGAGAGAAATGTGCCGGACCATCATGCACGAACGCATACCGGTATAGGGACTCCAAGCTGAATCTCCCTCTCTGCAGCCTGAAATGCTACAAAGCCGTCAATGGCAACGCTTGATTGACGGGACGCTCGGGCCGTGCCTATTTCCCGGTTTCGCAATCAACTCTGATCTATAATGTTCCCTCAAGAAAGCATTCTCGTCTATATACTGGTGGAAATAAGATAGGATGATCATCAGCCGCGGAGATGCACATCTTTGGTTGAGTTGATAGAAAGATACAGCTGTCCAATA]
consensusID : consensus_14481#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 631 fasta sequence
[AGTTAAGGNGAGACCACCCAGNGCACAAACTTTTCCNTGGAAACCCCCATCAGGTGGGTCCTGGGNCCCAAGGGCCCCCGTGGTTTCATTCCCGGAAGAAGTAGGCTTCCCCAGCATCTTCAACTCCAGCCTTGCAACTACCCTCCCCCGCGAGAGAATGTGCCGGACCATCTGCACGACGCATACCGGTATAGGGACTCCAGCTGATCCCTCTCTGCAGCCTGAATGCTACAAGCCCGTCCAATGGCAACGCTTGATTGACGGGACGCTCGGGCCGTGCCTATTTCCCGGTTTCGCATCACTCTGATCTATATGTTCCCTCAAGAAGCATTCTCGTCTATATACTGGTGGAATAAGATAGGATGATCATCAGCCGCGGAGATGCACATTTTTGGTTGAGTTGATAGAAAGATACAGCTGTCCAATAAGTGCATATACATGTGTATCATGTATGCATATTTACATACATATAGATTTGTCAACCTGTTTTCAGGGCTTGTGAGCAGATGTACTGCTGCTGCCCTCTGATACCTGTATTGCAGATAGTAGACATATACACATATGAAGGAGCAGAAATGTAGAATAAGTTGTTGTACCAAAGTTCCTTGTGTTTGTTCAAAAAAAAAAAAAA]
[+] EMBL AU029490 [AGTTAAGGNGAGACCACCCAGNGCACAAACTTTTCCNTGGAAACCCCCATCAGGTGGGTCCTGGGNCCCAAGGGCCCCCGTGGTTTCATTCCCGGAAGAAGTAGGCTTCCCCAGCATCTTCAACTCCAGCCTTGCAACTACCCTCCCCCGCGAGAGAATGTGCCGGACCATCTGCACGACGCATACCGGTATAGGGACTCCAGCTGATCCCTCTCTGCAGCCTGAATGCTACAAGCCCGTCCAATGGCAACGCTTGATTGACGGGACGCTCGGGCCGTGCCTATTTCCCGGTTTCGCATCACTCTGATCTATATGTTCCCTCAAGAAGCATTCTCGTCTATATACTGGTGGAATAAGATAGGATGATCATCAGCCGCGGAGATGCACATTTTTGGTTGAGTTGATAGAAAGATACAGCTGTCCAATAAGTGCATATACATGTGTATCATGTATGCATATTTACATACATATAGATTTGTCAACCTGTTTTCAGGGCTTGTGAGCAGATGTACTGCTGCTGCCCTCTGATACCTGTATTGCAGATAGTAGACATATACACATATGAAGGAGCAGAAATGTAGAATAAGTTGTTGTACCAAAGTTCCTTGTGTTTGTTCAAAAAAAAAAAAAA]
consensusID : consensus_14481#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 212 fasta sequence
[CCGCCAGAGCACAAACTATTCCTGAAAACACCATCAGGTGGGTCATGGGCCCAAACGGACCGTGGTTTCATTCCCGGAAGAAGTAGGCCTTCCCAGCATCTTCAACTCCAANNTTGCAACTACCCTCCCCCGATCGTAGAGAGAAATGGTGATCCGTGATCCATCATGCACAACGCATACGTATAGGACTCAAGCTTGATCTCCTNNNNCGT]
[+] EMBL AA751130 [CCGCCAGAGCACAAACTATTCCTGAAAACACCATCAGGTGGGTCATGGGCCCAAACGGACCGTGGTTTCATTCCCGGAAGAAGTAGGCCTTCCCAGCATCTTCAACTCCAANNTTGCAACTACCCTCCCCCGATCGTAGAGAGAAATGGTGATCCGTGATCCATCATGCACAACGCATACGTATAGGACTCAAGCTTGATCTCCTNNNNCGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14481#1 ------------------------------------------------------------
consensus_14481#3 ------------------------------------------------------------
consensus_14481#0 TTGGCATCTTCCCGAGACAAGAAAACCAAAAAGGAGAAGTCAATTGATGACGCGCTAACT 60
consensus_14481#2 ------------------------------------------------------------
consensus_14481#1 ------------------------------------------------------------
consensus_14481#3 ------------------------------------------------------------
consensus_14481#0 CCAGAACAACCAGCCAAAGTTCACAGGGAACCATCTTCAGATCCTGTCCGGAAGAGTAGG 120
consensus_14481#2 ------------------------------------------------------------
consensus_14481#1 ------------------------------------------------------------
consensus_14481#3 ------------------------------------------------------------
consensus_14481#0 AGGATTGCTAAGAAATCCATCTTGGACAGTGAATTAGATGAGGACTATGATACAAATGTT 180
consensus_14481#2 ------------------------------------------------------------
consensus_14481#1 ------------------------------------------------------------
consensus_14481#3 ------------------------------------------------------------
consensus_14481#0 CTTGATGATTTTGGAACTTCTGAAGGTGTGGAAGTCCATACTCGTGAGCCTGCAAAAAAA 240
consensus_14481#2 ------------------------------------------------------------
consensus_14481#1 ------------------------------------------------------------
consensus_14481#3 ------------------------------------------------------------
consensus_14481#0 ACAGGAAGTAGCTCTAAGAAGAATGCTGCAAAGAAAGCTAAAACTAAGAGCACATCATAC 300
consensus_14481#2 ------------------------------------------------------------
consensus_14481#1 ------------------------------------------------------------
consensus_14481#3 ------------------------------------------------------------
consensus_14481#0 GAGATCGATAATGATTTTGTTACCTCCAGATCAAAAAGGGATGGCAATAAAAGGTCTAGG 360
consensus_14481#2 ------------------------------------------------------------
consensus_14481#1 ------------------------------------------------------------
consensus_14481#3 ------------------------------------------------------------
consensus_14481#0 GAATCTACTGATGCTGATAATAGTGAAGAGGAACCTACATCTGACAGTGAGCTTGATGCA 420
consensus_14481#2 ------------------------------------------------------------
consensus_14481#1 ------------------------------------------------------------
consensus_14481#3 ------------------------------------------------------------
consensus_14481#0 CAAAACAGGAAGCAGAAAGCAGTCACTGAATCACCTGCTAATGTAAGAAGCGAGCCTCTG 480
consensus_14481#2 ------------------------------------------------------------
consensus_14481#1 -CGAGGGCTCAGCGGCGCAAGATGCAAGTCGAGAAGGCTACTAAAGAAAGCGAGGCTGAA 59
consensus_14481#3 ------------------------------------------------------------
consensus_14481#0 ACAACACGTCGCCGTGCCCTTCAATCATGGATGGATGGAAACAGCAACAGTGCTATTGAG 540
consensus_14481#2 ------------------------------------------------------------
consensus_14481#1 GCTATAAGGAAAATTTTGGGCCTGGATTCTGAGAAGAAGAAAGAAGAAAGAAAGCAAAAG 119
consensus_14481#3 ------------------------------------------------------------
consensus_14481#0 TTCCCTGATGGTTTGCCACCAGCTCCTTCAAGAGGCAAGAAGGATAAGCTTTCTGATGCG 600
consensus_14481#2 ------------------------------------------------------------
consensus_14481#1 GAGCGAGAAGATAAGGTTTATTGCATCATTCGATCATGCTGTTTTTGTACCCTTATTTTC 179
consensus_14481#3 ------------------------------------------------------------
consensus_14481#0 GAAATGCTTGCCAAGAAGGCAGAGGCTGCTCAGCGGCGCAAGATGCAAGTCGAGAAGGCT 660
consensus_14481#2 ------------------------------------------------------------
consensus_14481#1 TCTAATGCGTTTTAGTACCCTTATCAATAATAGTACCCTTATCAATGTATCTTCTGCTAC 239
consensus_14481#3 ------------------------------------------------------------
consensus_14481#0 ACTAAAGAAAGCGAGGCTGAAGCTATAAGGAAAATTTTGGGCCTGGATTCTGAGAAGAAG 720
consensus_14481#2 ------------------------------------------------------------
consensus_14481#1 TAGCTTCTGAACTAGACTCTTACTTCCCCCTTCCAGGAGAGAGCAGCCAGAGCACAAACT 299
consensus_14481#3 -------------------------------------------CCGCCAGAGCACAAACT 17
consensus_14481#0 AAAGAAGAAAGAAAGCAAAAGGAGCGAGAAGATAAGGAGAGAGCAGCCAGAGCACAAACT 780
consensus_14481#2 -----------------------------AGTTAAGGNGAGACCACCCAGNGCACAAACT 31
* **** *********
consensus_14481#1 ATTCCT--GAAAACACCATCAGGTGGGTCATGGGCCCAAAGGGCACC-GTGGTTTCATTC 356
consensus_14481#3 ATTCCT--GAAAACACCATCAGGTGGGTCATGGGCCCAAACGG-ACC-GTGGTTTCATTC 73
consensus_14481#0 ATTCCT--GAAAACACCATCAGGTGGGTCATGGGCCCAAAGGGCACC-GTGGTTTCATTC 837
consensus_14481#2 TTTCCNTGGAAACCCCCATCAGGTGGGTCCTGGGNCCCAAGGGCCCCCGTGGTTTCATTC 91
**** **** * ************** **** ** ** ** ** ************
consensus_14481#1 CCGGAAGAAGTAGGCCTTCCCAGCATCTTCAACTCCAAGCCTTGCAACTACCCTCCCCCG 416
consensus_14481#3 CCGGAAGAAGTAGGCCTTCCCAGCATCTTCAACTCCAANN-TTGCAACTACCCTCCCCCG 132
consensus_14481#0 CCGGAAGAAGTAGGCCTTCCCAGCATCTTCAACTCCAAGCCTTGCAACTACCCTCCCCCG 897
consensus_14481#2 CCGGAAGAAGTAGGCTTCCCCAGCATCTTCAACTCCA-GCCTTGCAACTACCCTCCCCCG 150
*************** * ******************* *******************
consensus_14481#1 C-----GAGAGAAATG-----TGCCGGACCATCATGCACGAACGCATACCGGTATAGGGA 466
consensus_14481#3 ATCGTAGAGAGAAATGGTGATCCGTGATCCATCATGCAC-AACGCATAC--GTATAGGA- 188
consensus_14481#0 C-----GAGAGAAATG-----TGCCGGACCATCATGCACGAACGCATACCGGTATAGGGA 947
consensus_14481#2 C-----GAGAGAA-TG-----TGCCGGACCATC-TGCACGA-CGCATACCGGTATAGGGA 197
******* ** * ***** ***** * ******* *******
consensus_14481#1 CTCCAAGCTGAATCTCCCTCTCTGCAGCCTGAAATGCTACAAAGCCGTC-AATGGCAACG 525
consensus_14481#3 -CTCAAGCTTGATCTCCTNNNNCGT----------------------------------- 212
consensus_14481#0 CTCCAAGCTGAATCTCCCTCTCTGCAGCCTGAAATGCTACAAAGCCGTC-AATGGCAACG 1006
consensus_14481#2 CTCCA-GCTGA---TCCCTCTCTGCAGCCTGAA-TGCTACAAGCCCGTCCAATGGCAACG 252
** *** *** *
consensus_14481#1 CTTGATTGACGGGACGCTCGGGCCGTGCCTATTTCCCGGTTTCGCAATCAACTCTGATCT 585
consensus_14481#3 ------------------------------------------------------------
consensus_14481#0 CTTGATTGACGGGACGCTCGGGCCGTGCCTATTTCCCGGTTTCGCAATCAACTCTGATCT 1066
consensus_14481#2 CTTGATTGACGGGACGCTCGGGCCGTGCCTATTTCCCGGTTTCGCATC--ACTCTGATCT 310
consensus_14481#1 ATAATGTTCCCTCAAGAAAGCATTCTCGTCTATATACTGGTGGAAATAAGATAGGATGAT 645
consensus_14481#3 ------------------------------------------------------------
consensus_14481#0 ATAATGTTCCCTCAAGAAAGCATTCTCGTCTATATACTGGTGGAAATAAGATAGGATGAT 1126
consensus_14481#2 ATA-TGTTCCCTCAAGAA-GCATTCTCGTCTATATACTGGTGGAA-TAAGATAGGATGAT 367
consensus_14481#1 CATCAGCCGCGGAGATGCACATCTTTGGTTGAGTTGATAGAAAGATACAGCTGTCCAATA 705
consensus_14481#3 ------------------------------------------------------------
consensus_14481#0 CATCAGCCGCGGAGATGCACATTTTTGGTTGAGTTGATAGAAAGATACAGCTGTCCAATA 1186
consensus_14481#2 CATCAGCCGCGGAGATGCACATTTTTGGTTGAGTTGATAGAAAGATACAGCTGTCCAATA 427
consensus_14481#1 ------------------------------------------------------------
consensus_14481#3 ------------------------------------------------------------
consensus_14481#0 AGTGCATATACATGTGTATCATGTATGCATATTTACATACATATAGATTTGTCAACCTGT 1246
consensus_14481#2 AGTGCATATACATGTGTATCATGTATGCATATTTACATACATATAGATTTGTCAACCTGT 487
consensus_14481#1 ------------------------------------------------------------
consensus_14481#3 ------------------------------------------------------------
consensus_14481#0 TTTCAGGGCTTGTGAGCAGATGTACTGCTGCTGCCCTCTGATACCTGTATTGCAGATAGT 1306
consensus_14481#2 TTTCAGGGCTTGTGAGCAGATGTACTGCTGCTGCCCTCTGATACCTGTATTGCAGATAGT 547
consensus_14481#1 ------------------------------------------------------------
consensus_14481#3 ------------------------------------------------------------
consensus_14481#0 AGACATATACACATATGAAGGAGCAGAAATGTAGAATAAGTTGTTGTACCAAAAAAACTT 1366
consensus_14481#2 AGACATATACACATATGAAGGAGCAGAAATGTAGAATAAGTTGTTGTACCAAAGTTCCTT 607
consensus_14481#1 ---------------------------------------------------
consensus_14481#3 ---------------------------------------------------
consensus_14481#0 GTGTTTGTTCACTTCTTCATTCAGTTTATGCACACACTCGGCCATCATGTC 1417
consensus_14481#2 GTGTTTGTTCAAAAAAAAAAAAAA--------------------------- 631
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||