|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14484#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 2065 fasta sequence
[TCGAAAATTAAAAAAAGAGAGAGAAATAAAAGGGGATCGATCCGCTCTTGTAGTTGTAGAGCGTTCCATTCCACTTCCACAGCAGTGGACTCAGTGAGCAACGGAGGAAGCAACGATGCGCTCCCGATCTCTCCTCCTCGTCGCCCTCGCCACCCTTCTTCTCCACGCCTCCGCCTCCGCCTCCGACGACGACCTCGACTACCTCATCGACAACGCCGACGACATCCCCGCCAACGACCCCGACGGCTGGCTCCAGGAGGGCTCCCCCGACGACGACGACGACGACGACCTCTTCCACCATGGCCAGGCCCAGGACCATCCCATAGATGAGACCCACGTCTTCCTCCTCTCCGCCGCCAACTTCTCCGACTTCCTCGCCTCCCACCGCCATGTCATGGTCGAGTTCTACGCCCCCTGGTGCGCCCATTGCCAGGCGCTCGCCCCAGACTACGCCGCCGCCGCCGCCGACCTCTCCCCTCTTGCCCATCAAGTCGCCCTCGCCAAGGTCGACGCCACCGAGGACACTGATCTCGCCCAGAAGTACGACGTCCAGGGCTTCCCCACCATCCTCTTCTTCATCGACGGCGTTCCCAAGGACTACAACGGCGCAAGAACCAAGGAAGCCATCGTGTCGTGGGTCAACAAGAAGCTAGCTCCCGGGGTGCAAAACATCACCACCGTCGACGAGGCGGAGAAGATACTCACCGGGGAGGACAAGGCCATTCTTGCCGTCCTCGACTCCCTATCGGGTGCTCACAGTGATGAGATTGCTGCTGCTTCGAGGCTGGAAGATGCTATCAACTTTTACCAGACTTCCAATCCTGATGTTGCCAAGCTTTTTCACCTTGACCCAGCGGCCAAGCGCCCGTCCTTAGTCCTGCTCAAGAAACAAGAGGAGGAGAAGTTGACCTTCTATGATGGGCCATTCAAAGCATCTGCAATTGCCGATTTTGTATCTGCAAACAAGCTTCCGTTGGTCAACACCCTCACACAGGAAACTGCTCCTTCCATTTTTGACAATCCAATCAAGAAGCAGATTTTACTATTTGTTGTTGCAAACGAATCGTCGAAATTTCTGCCCATCTTTAAGGAAGCATCAAAATCATTCAAGGGGAAGCTTTTGTTTGTCTTTGTGGAGCGTGACAATGAGGAAGTAGGTGAACCAGTTGCCAACTACTTTGGTATTACTGGACAAGAGACCACAGTTCTTGCTTACACTGGGAATGAAGATGCTAGGAATTTTTTCCTTGATGGTGAAATATCGGTAGAGAATATTAAGAGATTTGCTGAGGATTTCTTAGAGGAAAAGCTCACACCGTTCTACAAGTCTGAACCTGTACCTGAATCTAATGAAGGAGATGTCAAAATTGTTGTTGGAAAAAACCTAGATCAGATTGTTTTGGATGAATCAAAAGAT-GCCCTTTTGGAGATATATGCACCATGGTGTGGGCATTGTCAGGAACTGGAGCCTACCTACAACAAGCTAGG-AAAGCA-TCT-CCGTGG-CATT--GA-CTCCCTTGTAATAGCTAAAATGGATGGCACTGCCAATGAGCATCCACGTGCAAAG-CCTGATGGATTCCCAACGAT-CCTC-TTTTATCCAG-CAGGAAAGAAAAGTTTTGAG-CCTATTACTTTTGAGGGGGACCGTA-CGGTGGTGGAGATGTACAAGTTTATCAAG-AAGCA-CGCTAGCATCCCTTTCAAACTGAAGC-G-GCCGGATTCGTCAGCAACGAAAACAGAGAAGGATCAGAGCACAGCTTCAACTAATTTGAGG-G-GGGAGA-GGAGTTCCGGTACAAATTTCAAGGATGAGTTGTAGTCTTGTAGAGCGGCATTGGTGCAACCTTTGAACAAGGCA-ACGACGCTCTCTAGAAAAGGCTGTTTCTTTTTATGTATGCGAGGGCCTGAGGGGCAGCAGAAAGGAATCCAAAGTTGGTTTCTACTTTCTATAGAGAGTATTCCGGTAAGGAGTTAGCTTGGACGATGTGCATGTTGAGATGAACGAATTGAATCGAATCGAATGGAATAAAAGCAAACGAAACGGCTTCGATAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK071514 [TCGAAAATTAAAAAAAGAGAGAGAAATAAAAGGGGATCGATCCGCTCTTGTAGTTGTAGAGCGTTCCATTCCACTTCCACAGCAGTGGACTCAGTGAGCAACGGAGGAAGCAACGATGCGCTCCCGATCTCTCCTCCTCGTCGCCCTCGCCACCCTTCTTCTCCACGCCTCCGCCTCCGCCTCCGACGACGACCTCGACTACCTCATCGACAACGCCGACGACATCCCCGCCAACGACCCCGACGGCTGGCTCCAGGAGGGCTCCCCCGACGACGACGACGACGACGACCTCTTCCACCATGGCCAGGCCCAGGACCATCCCATAGATGAGACCCACGTCTTCCTCCTCTCCGCCGCCAACTTCTCCGACTTCCTCGCCTCCCACCGCCATGTCATGGTCGAGTTCTACGCCCCCTGGTGCGCCCATTGCCAGGCGCTCGCCCCAGACTACGCCGCCGCCGCCGCCGACCTCTCCCCTCTTGCCCATCAAGTCGCCCTCGCCAAGGTCGACGCCACCGAGGACACTGATCTCGCCCAGAAGTACGACGTCCAGGGCTTCCCCACCATCCTCTTCTTCATCGACGGCGTTCCCAAGGACTACAACGGCGCAAGAACCAAGGAAGCCATCGTGTCGTGGGTCAACAAGAAGCTAGCTCCCGGGGTGCAAAACATCACCACCGTCGACGAGGCGGAGAAGATACTCACCGGGGAGGACAAGGCCATTCTTGCCGTCCTCGACTCCCTATCGGGTGCTCACAGTGATGAGATTGCTGCTGCTTCGAGGCTGGAAGATGCTATCAACTTTTACCAGACTTCCAATCCTGATGTTGCCAAGCTTTTTCACCTTGACCCAGCGGCCAAGCGCCCGTCCTTAGTCCTGCTCAAGAAACAAGAGGAGGAGAAGTTGACCTTCTATGATGGGCCATTCAAAGCATCTGCAATTGCCGATTTTGTATCTGCAAACAAGCTTCCGTTGGTCAACACCCTCACACAGGAAACTGCTCCTTCCATTTTTGACAATCCAATCAAGAAGCAGATTTTACTATTTGTTGTTGCAAACGAATCGTCGAAATTTCTGCCCATCTTTAAGGAAGCATCAAAATCATTCAAGGGGAAGCTTTTGTTTGTCTTTGTGGAGCGTGACAATGAGGAAGTAGGTGAACCAGTTGCCAACTACTTTGGTATTACTGGACAAGAGACCACAGTTCTTGCTTACACTGGGAATGAAGATGCTAGGAATTTTTTCCTTGATGGTGAAATATCGGTAGAGAATATTAAGAGATTTGCTGAGGATTTCTTAGAGGAAAAGCTCACACCGTTCTACAAGTCTGAACCTGTACCTGAATCTAATGAAGGAGATGTCAAAATTGTTGTTGGAAAAAACCTAGATCAGATTGTTTTGGATGAATCAAAAGAT GCCCTTTTGGAGATATATGCACCATGGTGTGGGCATTGTCAGGAACTGGAGCCTACCTACAACAAGCTAGG AAAGCA TCT CCGTGG CATT GA CTCCCTTGTAATAGCTAAAATGGATGGCACTGCCAATGAGCATCCACGTGCAAAG CCTGATGGATTCCCAACGAT CCTC TTTTATCCAG CAGGAAAGAAAAGTTTTGAG CCTATTACTTTTGAGGGGGACCGTA CGGTGGTGGAGATGTACAAGTTTATCAAG AAGCA CGCTAGCATCCCTTTCAAACTGAAGC G GCCGGATTCGTCAGCAACGAAAACAGAGAAGGATCAGAGCACAGCTTCAACTAATTTGAGG G GGGAGA GGAGTTCCGGTACAAATTTCAAGGATGAGTTGTAGTCTTGTAGAGCGGCATTGGTGCAACCTTTGAACAAGGCA ACGACGCTCTCTAGAAAAGGCTGTTTCTTTTTATGTATGCGAGGGCCTGAGGGGCAGCAGAAAGGAATCCAAAGTTGGTTTCTACTTTCTATAGAGAGTATTCCGGTAAGGAGTTAGCTTGGACGATGTGCATGTTGAGATGAACGAATTGAATCGAATCGAATGGAATAAAAGCAAACGA ]
[+] EMBL CB656613 [ CAGTGCGCAACGGAGGAAGCAACGATGCGCTCCCGATCTCTCCTCCTCGTCGCCCTCGCCACCCTTCTTCTCCACGCCTCCGCCTCCGCCTCCGACGACGACCTCGACTACCTCATCGACAACGCCGACGACATCCCCGCCAACGACCCCGACGGCTGGCTCCAGGAGGGCTCCCCCGACGACGACGACGACGACGACCTCTTCCACCATGGCCAGGCCCAGGACCATCCCATAGATGAGACCCACGTCTTCCTCCTCTCCGCCGCCAACTTCTCCGACTTCCTCGCCTCCCACCGCCATGTCATGGTCGAGTTCTACGCCCCCTGGTGCGCCCATTGCCAGGCGCTCGCCCCAGACTACGCCGCCGCCGCCGCCGACCTCTCCCCTCTTGCCCATCAAGTCGCCCTCGCCAAGGTCGACGCCACCGAGGACACTGATCTCGCCCAGAAGTACGACGTCCAGGGCTTCCCCACCATCCTCTTCTTCATCGACGGCGTTCCCAAGGACTACAACGGCGCAAGAACCAAGGAAGCCATCGTGTCGTGGGTCAACAAGAAGCTAGCTCCCGGGGTGCAAAACATCACCACCGTCGACGAGGCGGAGAAGATACTCACCGGGGAGGACAAGGCCATTCTTGCCGTCCTCGACTCCCTATCGGGTGCTCACAGTGATGAGATTGCTGCTGCTTCGAGGCTGGAAGATGCTATCAACTTTTACCAGACTTCNCATCCTGATGTTGCCAAGCTTTTTCACCTTGACCCAGCGGCCAAGCGCCCGTCCTTAGTCCTGCTCAAGAAAC AGAGGAGGAGAAGTTGACCTT ]
[-] EMBL CB656614 [ AGAATATTAAGAGATTTGCTGAGGATTTCTTAGAGGAAAAGCTCACACCGTTCTACAAGTCTGAACCTGTACCTGAATCTAATGAAGGAGATGTCAAAATTGTTGTTGGAAAAAACCTAGATCAGATTGTTTTGGATGAATCAAAAGAT GCCCTTTTGGAGATATATGCACCATGGTGTGGGCATTGTCAGGAACTGGAGCCTACCTACAACAAGCTAGG AAAGCA TCT CCGTGG CATT GA CTCCCTTGTAATAGCTAAAATGGATGGCACTGCCAATGAGCATCCACGTGCAAAG CCTGATGGATTCCCAACGAT CCTC TTTTATCCAG CAGGAAAGAAAAGTTTTGAG CCTATTACTTTTGAGGGGGACCGTA CGGTGGTGGAGATGTACAAGTTTATCAAG AAGCA CGCTAGCATCCCTTTCAAACTGAAGC G GCCGGATTCGTCAGCAACGAAAACAGAGAAGGATCAGAGCACAGCTTCAACTAATTTGAGG G GGGAGA GGAGTTCCGGTACAAATTTCAAGGATGAGTTGTAGTCTTGTAGAGCGGCATTGGTGCAACCTTTGAACAAGGCA ACGACGCTCTCTAGAAAAGGCTGTTTCTTTTTATGTATGCGAGGGCCTGAGGGGCAGCAGAAAGGAATCCAAAGTTGGTTTCTACTTTCTATAGAGAGTATTCCGGTAAGGAGTTAGCTTGGACGATGTGCATGTTGAGATGAACGAATTGAATCGAATCGAATGGAATAAAAGCAAACGAAACGGCTTCGATAAAAAAAAga ]
[-] EMBL CA759908 [ AACAACCTAGGCTAGATTG TTTGGGTGAATCCAAAAATGGCCCCTTGGGAGATATATGCGCCCTGGTGGGGGCATTGTCAGGAACTGGGGCCTCCCTACAACAAGCTAGGAAAAGCA TTT CCGTGG CAGT GG CTCCCTGGTGATAGCTAAAATGGATGGCGCTGCCAATGAGCATCCACGTGCAAAG CCTGATGGATTCCCAACGAT CCTC TTTTATCCAG CAGGAAAGAAAAGTTTTGAG CCTATTACTTTTGAGGGGGACCGTA CGGTGGTGGAGATGTCCAAGTTTATCAAG AAGCC CGCTAGCATCCCTTTCAAACTGAAAC G GCCGGGTTTGTCAGCAACGAAAACAGAGAAGGATCAGAGCCCAGCTTCAACTAATTTGAGG G GGGAGA GGAGTTCCGGTACAAATTTCAAGGATGAGTTGTAGTCTTGTAGAGCGGCATTGGTGCAACCTTTGAACAAGGCA ACGACGCTCTCTAGAAAAGGCTGTTTCTTTTTATGTATGCGAGGGCCTGAGGGGCAGCAGAAAGGAATCCAAAGTTGGTTTCTACTTTCTATAGAGAGTATTCCGGTAAGGAGTTAGCTTGGACGATGTGCATGTTGAGATGAACGAATTGAATCGAATCGAATGGAATAAAAGCAAACGAAACGGCTTCGATAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL BI807335 [ gatAAGCATTCTGCCGNGGCCAGTGGGACCTCCC TGTAATAGCT AAAT GAT GCACT CCAATGAGCATCCACGTGCAAA CCTGATGGATTCCCAACGAT CCTC TTTTATCCAG CAGGAAAGAAAAGTTTTGAG CCTANTACTTTTGAGGGGGACCGTA CGGTGGTGGAGATGTACAAGTTTATCAAGTAAGCA CGCTAGCATCCCTTTCAAACTGAAGC G GCCGGATTCGTCAGCAACGAAAACAGAGAAGGATCAGAGCACAGCTTCAACTAATTTGAGG G GGGAGATGGAGTTCCGGTACAAATTTCAAGGATGAGTTGTAGTCTTGTAGA CGGCATTGGTGCAACCTTTGAACAAGGCA ACGACGCTCTCTAGACNAGGCTGTTTCTTTTTATGTATGCGAGGGCCTGA GGGCAGCAGAAAGGAATCC AAGTTGGTTTCTACTTTCTATAGAGAGTATTCCGGTAAGGAGTTAGCTTGGACGATGTGCATGTTGAGATGAACGAATTGAATCGAATCGAATGGAATCAAA C AACGAAAaaaa ]
[+] EMBL BI799387 [ TAGCTAAAATGGATGCCACTGCCAATGAGCATCCACGTGCCAAGCCCTGATGGATTCCC ACGAT CCTC TTTTATCCAGCCAGGAAAGAAAAGTTTTGAGCCCTATTACTTTTGAGGGGGACCGTACCGGTGGTGGAGATGTACAAGTTTATCAAG AAGCACCGCTAGCATCCCTTTCAAACTGAAGC G GCCGGATTCGTCAGCAACGAAAACAGAGAAGGATCAGAGCACAGCTTCAACTAATTTGAGG G GGGAGA GGAGTTCCGGTACAAATTTCAAGGATGAGTTGTAGTCTTGTAGAGCGGCATTGGTGCAACCTTTGAACAAGGCA ACGACGCTCTCTAGAAAAGGCTGTTTCTTTTTATGTATGCGAGGGCCTGAGGGGCAGCAGAAAGGAATCCCAAGTTGGTTTCTACTTTCTAGAGAGAGTATTCCGGTAAGGAGTTAGCTTGGACGATGTGCATGTTGAGATGAACGAATTGAATCGAATCGAATGGAATAAAAGCCAACGAAACGGCTTCGATAAAAAAAAAA ]
[+] EMBL BI798845 [ TAGCTAAAATGGAT GCACTGCCAATGAGCATCCACGT CAAAG CCTGATGGATTCCCAACGATGCCTC TTTTATCCAG CAGGAAAGAAAAGTTTTGAG CCTATTACTTTTGAGGGGGACCGTA CGGTGGTGGAGATGTACAAGTTTATCAAG AAGCA CGCTAGCATCCCTTTCAAACTGAAGC G GCCGGATTCGTCAGCAACGAAAACAGAGAAGGATCAGAGCACAGCTTCAACTAATTTGAGG G GGGAGA GGAGTTCCGGTACAAATTTCAAGGATGAGTTGTAGTCTTGTAGAGCGGCATTGGTGCAACCTTTGAAC AGGCA ACGACGCTCTCTAGAAAAGGCTGTTTCTTTTTATGTATGCGAGGGCCTGAGGGGCAGCAGAAAGGAATCC AAGTTGGTTTCTACTTTCTAGAGAGAGTATTCCGGTAAGGAGTTAGCTTGGACGATGTGCATGTTGAGATGAACGAATTGAATCGAATCGAATGGAATAAAACCCAACGAAACGGCTTCGATAAAAAAAAAA ]
[+] EMBL BI798444 [ TAGCTAAAATGGATGGCACTGCC ATGAGCATCCACGTGCAAAG CCTGATGGATTCCC ACGAT CCTCGTTTTATCCAG CAGGAAAGAAAAGTTTTGAG CCTATTACTTTTGAGGGGGACCGTA CGGTGGTGGAGATGTACAAGTTTATCAAG AAGCA CGCTAGCATCCCTTTCAAACTGAAGC G GCCGGATTCGTCAGCAACGAAAACAGAGAAGGATCAGAGCACAGCTTCAACTAATTTGAGG G GGGAGA GGAGTTCCGGTAC AATTTCAAGGATGAGTTGTAGTCTTGTAGAGCGGCATTGGT CAACCTTTGAACAAGGCATACGACGCTCTCTAGAAAAGGCTGTTTCTCCTTATGTATGCGAGGGCCTGAGGGGCA CAGAAAGGAATCCCAAGTTGGTTTCTACTTTCTAGAGAGAGTATTCCGGTAAGGAGTTAGCTTGGACGATGTGCATGTTGAGATGAACGAATTGAATCGAATCGAATGGAATAAAACC ACGAAACGGCTTCGATAAAAAAAAAA ]
[+] EMBL BI798221 [ AATGGATGCCACT CCAATGAGCATCCACGTCCAAA CCTGATGGATTCCCAACGAT CCTC TTTTATCCAG CAGGAAAGAAAAGTTTTGA CCTATTACTTTTGAGGGGGACCGTA CGGTGGTGGAGATGTACAAGTTTATCAAG AAGCA CGCTAGCATCCCTTTCAAACTGAAGC G GCCGGATTCGTCAGCAACGAAAACAGAGAAGGATCAGAGCACAGCTTCAACTAATTTGAGG G GGGAGA GGAGTTCCGGTACAAATTTCAAGGATGAGTTGTAGTCTTGTAGAGCGGCATTGGTGCAACCTTTGAACAAGGCA ACGACGCTCTCTAGAAAAGGCTGTTTCTTTTTATGTATGCGAGGGCCTGAGGGGCAGCAGAAAGGAATCC AAGTTGGTTTCTACTTTCTAGAGAGAGTATTCCGGTAAGGAGTTAGCTTGGACGATGTGCATGTTGAGATGAACGAATTGAATCGAATCGAATGGAATAAAA CCAACGAAACGGCTTCGATAAAAAAAAAA ]
[+] EMBL AA751291 [ AGCATCCACGTGCAAAG CCTGATGGATTCCCAACGAT CCTC TTTTATCCAG CAGGAAAGAAAAGTTTTGAG CCTATTACTTTTGAGGGGGACCGTA C GTGGTGGAGATGTACAAGTTTATCAAG AAGCA GCCTAGCATCCCTTTCAAACTGAAGC G GCCGGATTCGTCAGCAACGAAAACAGAGAAGGAT ]
[+] EMBL AA751028 [ GTACAAGTTTATCAAG AAGCA CGCTAGCATCCCTTTCAAACTGAAGCTGTGCCGGATTCGTCAGCTTCGAAAACAGAGAAGGATCAGAGCACAGCTTCAACTAATTTGAGGTGTGGGAGA GGAGTTCCGGTACAAATTTCAAGGATGAGTTGTAGTCTTGTA ]
consensusID : consensus_14484#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 678 fasta sequence
[CGACCTCGACTACCTCATCGACAACGCCGACGACATCCCCGCCAACGACCCCGACGGCTGGCTCCAGGAGGGCTCCCCCGACGACGACGACGACGACGACGACCTCTTCCACCATGGCCAGGCCCAGGACCATCCCATAGATGAGACCCACGTCTTCCTCCTCTCCGCCGCCAACTTCTCCGACTTCCTCGCCTCCCACCGCCATGTCATGGTCGAGTTCTACGCCCCCTGGTGCGCCCATTGCCAGGCGCTCGCCCCAGACTACGCCGNCGNCGNCGNCGACCTNTNCCCTCTTGGCCATCAAGTCGCCCTCGCCAAGGGCGACGCCACCGAGGACACTGATCTCGCCAGAAGTACGACGTCCAGGGCTTCCCCACCCATCTCTTCTTAATTGACCGGGTGTCCCAAGGCTACAACGGGGCAAGAACAAGGAAGGCATCGGGGCGGGGGGAAAAAGAAGCTAGCTTCCGGGGGGCAAAAAATAACCACGGTGAAAAGGGGGGAAAAAAACTTACCGGGGGGGCAAGGGCATTTTTGGCCGGCCCGAATCCCTTTGGGGGGGCCAAGGGGAGGAAATGGCCGGGCTCCCAGGGGGGAAAAAGGTAAAAATTTCACAAGATTCCAATCCGGGGGGGGGAAGGTTTTAACCTTGGACAAGGGGGAAAGGCCCCCCCTTTA]
[+] EMBL BE040321 [CGACCTCGACTACCTCATCGACAACGCCGACGACATCCCCGCCAACGACCCCGACGGCTGGCTCCAGGAGGGCTCCCCCGACGACGACGACGACGACGACGACCTCTTCCACCATGGCCAGGCCCAGGACCATCCCATAGATGAGACCCACGTCTTCCTCCTCTCCGCCGCCAACTTCTCCGACTTCCTCGCCTCCCACCGCCATGTCATGGTCGAGTTCTACGCCCCCTGGTGCGCCCATTGCCAGGCGCTCGCCCCAGACTACGCCGNCGNCGNCGNCGACCTNTNCCCTCTTGGCCATCAAGTCGCCCTCGCCAAGGGCGACGCCACCGAGGACACTGATCTCGCCAGAAGTACGACGTCCAGGGCTTCCCCACCCATCTCTTCTTAATTGACCGGGTGTCCCAAGGCTACAACGGGGCAAGAACAAGGAAGGCATCGGGGCGGGGGGAAAAAGAAGCTAGCTTCCGGGGGGCAAAAAATAACCACGGTGAAAAGGGGGGAAAAAAACTTACCGGGGGGGCAAGGGCATTTTTGGCCGGCCCGAATCCCTTTGGGGGGGCCAAGGGGAGGAAATGGCCGGGCTCCCAGGGGGGAAAAAGGTAAAAATTTCACAAGATTCCAATCCGGGGGGGGGAAGGTTTTAACCTTGGACAAGGGGGAAAGGCCCCCCCTTTA]
consensusID : consensus_14484#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 582 fasta sequence
[AATACCTATAAGGACAAAGTGGGTCNCNCGTGCGCNTTTAGAATATGTCCCCGGNTGCGGATTGGCANGAGTAAATGATGCATGCCATGGCATCCAAGTGCAAGCCTGATGGATTCCAACGATCTNTTTATCCCACAGGAAAGAAAGTTTTGACCTATTACTTTTGAGGGGACGTACGGTGGTGGAGATGTACAAGTTTATCAAGAAGCACGNTAGCATCCCTTTCAAACTGAAGCGGCCGGATTCGTCAGCAACGAAAACAGAGAAGGATCAGAGCACAGCTTCAACTAATTTGAGGGGGGAGAGGAGTTCCGGTACAAATTTCAAGGATGAGTTGTAGTCTTGTAGAGCGGCATTGGTGCAACCTTTGAACAAGGCAACGACGCTCTCTAGAAAAGGCTGTTTCTTTTTATGTATGCGAGGGCCTGAGGGGCAGCAGAAAGGAATCCAAAGTTGGTTTCTACTTTCTAGAGAGAGTATTCCGGTAAGGAGTTA-G-CTTGGACGATGTGCATGTTGAGATGAACGAA-TTGAATCGAATCGAAT-GGAATAAAAGCAAACGAAACGGCTT-CGATAAAAAAAAAA]
[-] EMBL AA753291 [AATACCTATAAGGACAAAGTGGGTCNCNCGTGCGCNTTTAGAATATGTCCCCGGNTGCGGATTGGCANGAGTAAATGATGCATGCCATGGCATCCAAGTGCAAGCCTGATGGATTCCAACGATCTNTTTATCCCACAGGAAAGAAAGTTTTGACCTATTACTTTTGAGGGGACGTACGGTGGTGGAGATGTACAAGTTTATCAAGAAGCACGNTAGCATCCCTTTCAAACTGAAGCGGCCGGATTCGTCAGCAACGAAAACAGAGAAGGATCAGAGCACAGCTTCAACTAATTTGAGGGGGGAGAGGAGTTCCGGTACAAATTTCAAGGATGAGTTGTAGTCTTGTAGAGCGGCATTGGTGCAACCTTTGAACAAGGCAACGACGCTCTCTAGAAAAGGCTGTTTCTTTTTATGTATGCGAGGGCCTGAGGGGCAGCAGAAAGGAATCCAAAGTTGGTTTCTACTTTCTAGAGAGAGTATTCCGGTAAGGAGTTA G CTTGGACGATGTGCATGTTGAGATGAACGAA TTGAATCGAATCGAAT GGAATAAAAGCAAACGAAACGGCTT CGATAAAAAAAAAA]
[+] EMBL BI800068 [ GGGGCAGCAGAAAGGAATCCAAAGTTGGTTTCTACTTTCTAGAGAGAGTATTCCGGTAAGGAGTTACGCCTTGGACGATGTGCATGTTGAGATGAACGAACTTGAATCGAATCGAATGGGAATAAAAGCAACCGAAACGGCTTGCGATAAAAAAAAA ]
consensusID : consensus_14484#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 219 fasta sequence
[GAGCACAGCTTCAACTAATTTGAGGGGGGAGACGCCAGTTCCGGTACAATGTTCAAGGATGAGTTGTAGTCTTGTAGATCGCCATTGGTGCAACCTCTTGGACAGAGGCAAACGACGCTCTCTAGAAAAGGCTGTTCTCATTTTTATGCTATGCGAGGGCCTGAGGGGCAGCAGAAAGGAATCCAAGTTGGTTTTACTTTTAGAGAGAGTATTCCAGGT]
[+] EMBL BI795290 [GAGCACAGCTTCAACTAATTTGAGGGGGGAGACGCCAGTTCCGGTACAATGTTCAAGGATGAGTTGTAGTCTTGTAGATCGCCATTGGTGCAACCTCTTGGACAGAGGCAAACGACGCTCTCTAGAAAAGGCTGTTCTCATTTTTATGCTATGCGAGGGCCTGAGGGGCAGCAGAAAGGAATCCAAGTTGGTTTTACTTTTAGAGAGAGTATTCCAGGT]
consensusID : consensus_14484#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 194 fasta sequence
[CTTGGTTATTGGACACCTTTATTGTTTTTATCCTTTTTACATGCAGAGATTTGCTGAGGATTTCTTAGAGGAAAAGCTCACACCGTTCTACAAGTCTGAACCTGTACCTGAATCTAATGAAGGAGATGTCAAAATTGTTGTTGGAAAAAAACCTAGATCAGATTGTTTTGGATGAATCAAAAGATGCCCTTTTG]
[+] EMBL AA750251 [CTTGGTTATTGGACACCTTTATTGTTTTTATCCTTTTTACATGCAGAGATTTGCTGAGGATTTCTTAGAGGAAAAGCTCACACCGTTCTACAAGTCTGAACCTGTACCTGAATCTAATGAAGGAGATGTCAAAATTGTTGTTGGAAAAAAACCTAGATCAGATTGTTTTGGATGAATCAAAAGATGCCCTTTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14484#0 TCGAAAATTAAAAAAAGAGAGAGAAATAAAAGGGGATCGATCCGCTCTTGTAGTTGTAGA 60
consensus_14484#1 ------------------------------------------------------------
consensus_14484#2 ------------------------------------------------------------
consensus_14484#3 ------------------------------------------------------------
consensus_14484#4 ------------------------------------------------------------
consensus_14484#0 GCGTTCCATTCCACTTCCACAGCAGTGGACTCAGTGAGCAACGGAGGAAGCAACGATGCG 120
consensus_14484#1 ------------------------------------------------------------
consensus_14484#2 ------------------------------------------------------------
consensus_14484#3 ------------------------------------------------------------
consensus_14484#4 ------------------------------------------------------------
consensus_14484#0 CTCCCGATCTCTCCTCCTCGTCGCCCTCGCCACCCTTCTTCTCCACGCCTCCGCCTCCGC 180
consensus_14484#1 ------------------------------------------------------------
consensus_14484#2 ------------------------------------------------------------
consensus_14484#3 ------------------------------------------------------------
consensus_14484#4 ------------------------------------------------------------
consensus_14484#0 CTCCGACGACGACCTCGACTACCTCATCGACAACGCCGACGACATCCCCGCCAACGACCC 240
consensus_14484#1 ---------CGACCTCGACTACCTCATCGACAACGCCGACGACATCCCCGCCAACGACCC 51
consensus_14484#2 -------------------------------AATACCTATAAGGACAA----AGTGGGTC 25
consensus_14484#3 ------------------------------------------------------------
consensus_14484#4 ------------------------------------------------------------
consensus_14484#0 CGACGGCTGGCTCCAGGAGGGCTCCCCCGACGACGACGACGACGACGAC---CTCTTCCA 297
consensus_14484#1 CGACGGCTGGCTCCAGGAGGGCTCCCCCGACGACGACGACGACGACGACGACCTCTTCCA 111
consensus_14484#2 NCNCGTGCGCNTTTAGAATATGTCCCCGGNTGCGGATTGGCANGAGTAA-ATGATGCATG 84
consensus_14484#3 ------------------------------------------------------------
consensus_14484#4 ------------------------------------------------------------
consensus_14484#0 CCATGGCCAGGCCCAGGACCATCCCATAGATGAGACCCACGTCTTCCTCCTCTCCGCCGC 357
consensus_14484#1 CCATGGCCAGGCCCAGGACCATCCCATAGATGAGACCCACGTCTTCCTCCTCTCCGCCGC 171
consensus_14484#2 CCATGGC---ATCCAAGTGCAAGCCTGATGGATTCCAACGATCTNTTTATCCCACAGGAA 141
consensus_14484#3 ------------------------------------------------------------
consensus_14484#4 ------------------------------------------------------------
consensus_14484#0 CAACTTCTCCGACTTCCTCGCCTCCCACCGCCATGTCATGGTCGAGTTCTAC--GCCCCC 415
consensus_14484#1 CAACTTCTCCGACTTCCTCGCCTCCCACCGCCATGTCATGGTCGAGTTCTAC--GCCCCC 229
consensus_14484#2 AGAAAGTTTTGACCTATTACTTTTGAGGGGACGTACGGTGGTGGAGATGTACAAGTTTAT 201
consensus_14484#3 ------------------------------------------------------------
consensus_14484#4 ------------------------------------------------------------
consensus_14484#0 TGGTGCGCCCATTGCCAGGCGCTCGCCCCAGACTACGCCGCCGCCGCCGCCGACCTCTCC 475
consensus_14484#1 TGGTGCGCCCATTGCCAGGCGCTCGCCCCAGACTACGCCGNCGNCGNCGNCGACCTNTNC 289
consensus_14484#2 CAAGAAGCACGNTAGCATCCCTTTCAAACTGAAGCGGCCGGATTCGTCAGCAACGAAAAC 261
consensus_14484#3 ------------------------------------------------------------
consensus_14484#4 ------------------------------------------------------------
consensus_14484#0 CCTCTTGCCCATCAAGTCGCCCTCGCCAAGGTCGACGCCACCGAGGACACTGATCTCGCC 535
consensus_14484#1 CCTCTTGGCCATCAAGTCGCCCTCGCCAAGGGCGACGCCACCGAGGACACTGATCTCGCC 349
consensus_14484#2 AGAGAAGGATCAGAGCACAGCTTCAACTAATTTGAGGGG---GGAGAGG--AGTTCCG-- 314
consensus_14484#3 ------------GAGCACAGCTTCAACTAATTTGAGGGG---GGAGACGCCAGTTCCG-- 43
consensus_14484#4 ------------------------------------------------------CTTGGT 6
*
consensus_14484#0 CAGAAGTACGACGTCCAGGGCTTCCCCACCATCCTCTTCTTCATCGACGGCGTTCCCAAG 595
consensus_14484#1 -AGAAGTACGACGTCCAGGGCTTCCCCACCCATCTCTTCTTAATTGACCGGGTGTCCCAA 408
consensus_14484#2 -----GTACAAATTTCAAGGATGAGTTGTAG---TCTTGTAGAGCGGC--ATTGGTGCAA 364
consensus_14484#3 -----GTACAATGTTCAAGGATGAGTTGTAG---TCTTGTAGATCGCC--ATTGGTGCAA 93
consensus_14484#4 ------TATTGGACACCTTTATTGTTTTTAT---CCTTTTTACATGCAGAGATTTGCTGA 57
** * * *** * * *
consensus_14484#0 GACTACAACGGCGCAAGAACCAAGGAAGCCATCGTGTC--GTGGGTCAACAAGAAGCTAG 653
consensus_14484#1 GGCTACAACGGGGCAAGAAC-AAGGAAGGCATCGGGGC--G-GGGGGAAAAAGAAGCTAG 464
consensus_14484#2 CCT-----TTGAACA-AGGCAA-CGACGCTCTCTAGAA--AAGGCTGTTTC--TTTTTAT 413
consensus_14484#3 CCTC----TTGGACAGAGGCAAACGACGCTCTCTAGAA--AAGGCTGTTCTCATTTTTAT 147
consensus_14484#4 GGATTTCTTAGAGGAAAAGCTCACACCGTTCTACAAGTCTGAACCTGTACCTGAATCTAA 117
* * * * * **
consensus_14484#0 CTCCCGGGGTGCAAAACATCACCACCGTCGACGAGGCGGAGAAGATACTCACCGGGGAGG 713
consensus_14484#1 CTTCCGGGGGGCAAAAAATAACCACGGT-GAAAAGGGGGGAAAAAAACTTACCGGGGGGG 523
consensus_14484#2 G-TATGCGAGGGCCTGAGGGGCAGCAGAAAGGAATCCAAAGTTGGTTTCTACTTTCTAGA 472
consensus_14484#3 GCTATGCGAGGGCCTGAGGGGCAGCAGAAAGGAATCCAA-GTTGGTTT-TACTTT-TAGA 204
consensus_14484#4 TGAAGGAGATGTCAAAATTGTTGTTGGAAAAAAACCTAG-ATCAGATTGTTTTGGATGAA 176
* * * * *
consensus_14484#0 ACAAGGCCATTCTTGCCGTCCTCGACTCCCTATCGGGTGCTCACAGTGATGAGATTGCTG 773
consensus_14484#1 -CAAGGGCATTTTTGGCCGGCCCGAATCCCTTTGGGGGGGCCAAGGGGAGGAAATGGCCG 582
consensus_14484#2 --GAGAGTATT-----CCGGTAAGGAGTTAGCTTGGACGATGTGCATGTTGAGATGAACG 525
consensus_14484#3 --GAGAGTATT-----CCAGGT-------------------------------------- 219
consensus_14484#4 TCAAAAG-ATGCCCTTTTG----------------------------------------- 194
* **
consensus_14484#0 CTGCTTCGAGGCTGGAAGATGCTATCAACTTTTACCAGACTTCCAATCCTGATGTTGCCA 833
consensus_14484#1 G-GCTCCCAGGGGGGAAAAAGGTAA-AAATTTCACAAGA-TTCCAATCCGGGGGGGGGAA 639
consensus_14484#2 AATTGAATCGAATCGAATGGAATAAAAGCAAACGAAACGGCTTCGATAAAAAAAAAA--- 582
consensus_14484#3 ------------------------------------------------------------
consensus_14484#4 ------------------------------------------------------------
consensus_14484#0 AGCTTTTTCACCTTGACCCAGCGGCCAAGCGCCCGTCCTTAGTCCTGCTCAAGAAACAAG 893
consensus_14484#1 GG--TTTTAACCTTGGACAAGGGGGAAAGGCCCCCCCTTTA------------------- 678
consensus_14484#2 ------------------------------------------------------------
consensus_14484#3 ------------------------------------------------------------
consensus_14484#4 ------------------------------------------------------------
consensus_14484#0 AGGAGGAGAAGTTGACCTTCTATGATGGGCCATTCAAAGCATCTGCAATTGCCGATTTTG 953
consensus_14484#1 ------------------------------------------------------------
consensus_14484#2 ------------------------------------------------------------
consensus_14484#3 ------------------------------------------------------------
consensus_14484#4 ------------------------------------------------------------
consensus_14484#0 TATCTGCAAACAAGCTTCCGTTGGTCAACACCCTCACACAGGAAACTGCTCCTTCCATTT 1013
consensus_14484#1 ------------------------------------------------------------
consensus_14484#2 ------------------------------------------------------------
consensus_14484#3 ------------------------------------------------------------
consensus_14484#4 ------------------------------------------------------------
consensus_14484#0 TTGACAATCCAATCAAGAAGCAGATTTTACTATTTGTTGTTGCAAACGAATCGTCGAAAT 1073
consensus_14484#1 ------------------------------------------------------------
consensus_14484#2 ------------------------------------------------------------
consensus_14484#3 ------------------------------------------------------------
consensus_14484#4 ------------------------------------------------------------
consensus_14484#0 TTCTGCCCATCTTTAAGGAAGCATCAAAATCATTCAAGGGGAAGCTTTTGTTTGTCTTTG 1133
consensus_14484#1 ------------------------------------------------------------
consensus_14484#2 ------------------------------------------------------------
consensus_14484#3 ------------------------------------------------------------
consensus_14484#4 ------------------------------------------------------------
consensus_14484#0 TGGAGCGTGACAATGAGGAAGTAGGTGAACCAGTTGCCAACTACTTTGGTATTACTGGAC 1193
consensus_14484#1 ------------------------------------------------------------
consensus_14484#2 ------------------------------------------------------------
consensus_14484#3 ------------------------------------------------------------
consensus_14484#4 ------------------------------------------------------------
consensus_14484#0 AAGAGACCACAGTTCTTGCTTACACTGGGAATGAAGATGCTAGGAATTTTTTCCTTGATG 1253
consensus_14484#1 ------------------------------------------------------------
consensus_14484#2 ------------------------------------------------------------
consensus_14484#3 ------------------------------------------------------------
consensus_14484#4 ------------------------------------------------------------
consensus_14484#0 GTGAAATATCGGTAGAGAATATTAAGAGATTTGCTGAGGATTTCTTAGAGGAAAAGCTCA 1313
consensus_14484#1 ------------------------------------------------------------
consensus_14484#2 ------------------------------------------------------------
consensus_14484#3 ------------------------------------------------------------
consensus_14484#4 ------------------------------------------------------------
consensus_14484#0 CACCGTTCTACAAGTCTGAACCTGTACCTGAATCTAATGAAGGAGATGTCAAAATTGTTG 1373
consensus_14484#1 ------------------------------------------------------------
consensus_14484#2 ------------------------------------------------------------
consensus_14484#3 ------------------------------------------------------------
consensus_14484#4 ------------------------------------------------------------
consensus_14484#0 TTGGAAAAAACCTAGATCAGATTGTTTTGGATGAATCAAAAGATGCCCTTTTGGAGATAT 1433
consensus_14484#1 ------------------------------------------------------------
consensus_14484#2 ------------------------------------------------------------
consensus_14484#3 ------------------------------------------------------------
consensus_14484#4 ------------------------------------------------------------
consensus_14484#0 ATGCACCATGGTGTGGGCATTGTCAGGAACTGGAGCCTACCTACAACAAGCTAGGAAAGC 1493
consensus_14484#1 ------------------------------------------------------------
consensus_14484#2 ------------------------------------------------------------
consensus_14484#3 ------------------------------------------------------------
consensus_14484#4 ------------------------------------------------------------
consensus_14484#0 ATCTCCGTGGCATTGACTCCCTTGTAATAGCTAAAATGGATGGCACTGCCAATGAGCATC 1553
consensus_14484#1 ------------------------------------------------------------
consensus_14484#2 ------------------------------------------------------------
consensus_14484#3 ------------------------------------------------------------
consensus_14484#4 ------------------------------------------------------------
consensus_14484#0 CACGTGCAAAGCCTGATGGATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTT 1613
consensus_14484#1 ------------------------------------------------------------
consensus_14484#2 ------------------------------------------------------------
consensus_14484#3 ------------------------------------------------------------
consensus_14484#4 ------------------------------------------------------------
consensus_14484#0 TTGAGCCTATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAGA 1673
consensus_14484#1 ------------------------------------------------------------
consensus_14484#2 ------------------------------------------------------------
consensus_14484#3 ------------------------------------------------------------
consensus_14484#4 ------------------------------------------------------------
consensus_14484#0 AGCACGCTAGCATCCCTTTCAAACTGAAGCGGCCGGATTCGTCAGCAACGAAAACAGAGA 1733
consensus_14484#1 ------------------------------------------------------------
consensus_14484#2 ------------------------------------------------------------
consensus_14484#3 ------------------------------------------------------------
consensus_14484#4 ------------------------------------------------------------
consensus_14484#0 AGGATCAGAGCACAGCTTCAACTAATTTGAGGGGGGAGAGGAGTTCCGGTACAAATTTCA 1793
consensus_14484#1 ------------------------------------------------------------
consensus_14484#2 ------------------------------------------------------------
consensus_14484#3 ------------------------------------------------------------
consensus_14484#4 ------------------------------------------------------------
consensus_14484#0 AGGATGAGTTGTAGTCTTGTAGAGCGGCATTGGTGCAACCTTTGAACAAGGCAACGACGC 1853
consensus_14484#1 ------------------------------------------------------------
consensus_14484#2 ------------------------------------------------------------
consensus_14484#3 ------------------------------------------------------------
consensus_14484#4 ------------------------------------------------------------
consensus_14484#0 TCTCTAGAAAAGGCTGTTTCTTTTTATGTATGCGAGGGCCTGAGGGGCAGCAGAAAGGAA 1913
consensus_14484#1 ------------------------------------------------------------
consensus_14484#2 ------------------------------------------------------------
consensus_14484#3 ------------------------------------------------------------
consensus_14484#4 ------------------------------------------------------------
consensus_14484#0 TCCAAAGTTGGTTTCTACTTTCTATAGAGAGTATTCCGGTAAGGAGTTAGCTTGGACGAT 1973
consensus_14484#1 ------------------------------------------------------------
consensus_14484#2 ------------------------------------------------------------
consensus_14484#3 ------------------------------------------------------------
consensus_14484#4 ------------------------------------------------------------
consensus_14484#0 GTGCATGTTGAGATGAACGAATTGAATCGAATCGAATGGAATAAAAGCAAACGAAACGGC 2033
consensus_14484#1 ------------------------------------------------------------
consensus_14484#2 ------------------------------------------------------------
consensus_14484#3 ------------------------------------------------------------
consensus_14484#4 ------------------------------------------------------------
consensus_14484#0 TTCGATAAAAAAAAAAAAAAAAAAAAAAAAAA 2065
consensus_14484#1 --------------------------------
consensus_14484#2 --------------------------------
consensus_14484#3 --------------------------------
consensus_14484#4 --------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||