These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14486#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1344 fasta sequence [TTTGCTTCTTCCGTTGCAATTCCATTCTCCTCTCTCTCCTGCTTCTCTCTCTCCTCCTCTTCTTCACCTCCTCTTGTCTGTCCATAGATCGAGCCGCTCAGACCAAATCTTGGATGCGTTCTCTCTTCTTT-CTCGCTGCGAGGGAGGCGGGTTGTTCGATCTGCGGGTGAAATCGAGCGAGAGATCCCTAGACCTCCCCCTACTTCTCTGTAGCTGTACATATTTCAAGAGAGGAAATTTTGGGCTGGTTTCTGATACGGTTCGAGAAGATTTTTGGCAATTTCTTCGGATTTTCCTCCCCTTGTGGGTTCCTTGGTTCATTGAGAAGAATCAAATGGGTGATGTGTCAGTCAATCGACCGATCAAGGCGGAGCCAGCTGCAGGCGGCATTGCTCAGGGCAATCGAATCCTGGACATGATGTCGTCAGGGTGGACAGATGAGCGGCACATGCATTATATAAGCTCAATGGAGGCTTCTTTCGTTGAGCAACTCTACAATCACGAACAAAATGATGCTGGCAACGGATTCAAGGTTCTCCGTGGT-GGGGTGT--GGGAGAAACTCAAATTTGATCGGACCAGTGCTTGCTCACGGATCGGGAGAAAATACTGCCTGCCCGCAAGCCCCTGGATCCAGCATTTCAGGCCGCGCGAATGCAGTAGCAATGCAAGGAATGATGCGGCGGAGGCTTTAGTGGGTGATCATGAATCTGGTATTCAGACTATCCAAGGGAGGACTCCGTTGTCACATGGAAGGGAGTGGGAGGCTTGCAAGG-AAGAAAAAGCTGTTGGTGAAAGTACAGAGGTCTCTGATCAGAATTTTGCTGATGATGAGGCGGAGGTTGATGCAGAATCAAGCAAAGCATGCAAGAGAAGGAAGTTAAGAAGTGCTCTTACACGGAATTACCAAGTTGTTCCATCTGACAAACTGTTTGCTTCCACAAAAGCTGATGGAAGGAAAGATGCTCCAGAGTAAGGCATGCAAGAGTGGATCTGGTTGAATATGCAGTCAATGAGAACTGGATGAGTTAGTATTGGCGATTTAGTAGTATAGTTCTGAACTCTGTAGAGTCTGTCTTGGTAGAAGAATAATAGGATCGATCACTCACAACATGGTAGATTTATTGTTTGATCATATTGTTGTAATGG-TTTTTTTTGTGTGTGTTGCTGTGTTCTGGCAACTGTTTGTTTGCAATGTGAGTAATATGTTTATGTTTGCCACAAGATGAGAATGATGCAAAGCCCATCATTCCTTTTGCCATAATTCCATTGTACATACATGTACTCCCATCATGATATTGAGAATGAAAGATCACCAATTTTGCAGAATGATATCCAACATCTGTA] [+] EMBL AK067400 [TTTGCTTCTTCCGTTGCAATTCCATTCTCCTCTCTCTCCTGCTTCTCTCTCTCCTCCTCTTCTTCACCTCCTCTTGTCTGTCCATAGATCGAGCCGCTCAGACCAAATCTTGGATGCGTTCTCTCTTCTTT CTCGCTGCGAGGGAGGCGGGTTGTTCGATCTGCGGGTGAAATCGAGCGAGAGATCCCTAGACCTCCCCCTACTTCTCTGTAGCTGTACATATTTCAAGAGAGGAAATTTTGGGCTGGTTTCTGATACGGTTCGAGAAGATTTTTGGCAATTTCTTCGGATTTTCCTCCCCTTGTGGGTTCCTTGGTTCATTGAGAAGAATCAAATGGGTGATGTGTCAGTCAATCGACCGATCAAGGCGGAGCCAGCTGCAGGCGGCATTGCTCAGGGCAATCGAATCCTGGACATGATGTCGTCAGGGTGGACAGATGAGCGGCACATGCATTATATAAGCTCAATGGAGGCTTCTTTCGTTGAGCAACTCTACAATCACGAACAAAATGATGCTGGCAACGGATTCAAGGTTCTCCGTGGT GGGGTGT GGGAGAAACTCAAATTTGATCGGACCAGTGCTTGCTCACGGATCGGGAGAAAATACTGCCTGCCCGCAAGCCCCTGGATCCAGCATTTCAGGCCGCGCGAATGCAGTAGCAATGCAAGGAATGATGCGGCGGAGGCTTTAGTGGGTGATCATGAATCTGGTATTCAGACTATCCAAGGGAGGACTCCGTTGTCACATGGAAGGGAGTGGGAGGCTTGCAAGG AAGAAAAAGCTGTTGGTGAAAGTACAGAGGTCTCTGATCAGAATTTTGCTGATGATGAGGCGGAGGTTGATGCAGAATCAAGCAAAGCATGCAAGAGAAGGAAGTTAAGAAGTGCTCTTACACGGAATTACCAAGTTGTTCCATCTGACAAACTGTTTGCTTCCACAAAAGCTGATGGAAGGAAAGATGCTCCAGAGTAAGGCATGCAAGAGTGGATCTGGTTGAATATGCAGTCAATGAGAACTGGATGAGTTAGTATTGGCGATTTAGTAGTATAGTTCTGAACTCTGTAGAGTCTGTCTTGGTAGAAGAATAATAGGATCGATCACTCACAACATGGTAGATTTATTGTTTGATCATATTGTTGTAATGGTTTTTTTTTGTGTGTGTTGCTGTGTTCTGGCAACTGTTTGTTTGCAATGTGAGTAATATGTTTATGTTTGCCACAAGATGAGAATGATGCAAAGCCCATCATTCCTTTTGCCATAATTCCATTGTACATACATGTACTCCCATCATGATATTGAGAATGAAAGATCACCAATT ] [+] EMBL CF282309 [ CGTTGCAATTCCATTCTCCTCTCTCTCCTGCTTCTCTCTCTCCTCCTCTTCTTCACCTCCTATCGTCTGCCCATACATCGAGCCGCTCACA CAAATCTTGTATGCGTTCTCTCTTCTTTACTCGCTGCGAGGGAGGCGGGTCGTTCTATCTGCGGGTGAAATCTAGCGAGAGATCCCTAGACCTCCCCCTACTTCTATGTAGCTGTACATATTTCAAGAGAGGAAATTATGGGCTGGTCTCTGATACAGCTCGAGAAGATTTTCGGCAATTTCTTCGGATTTTCCTCCCCTTGTGGGTTCCTTGGTTCATAGAGAATAATCAACAGGGAGATGTGTCAGGCAATCGACCGATCAAGGCGGAGCCATCTGCAGGCGGCATTGCTCAAGGCAATCGAATCCTGGACATGATGTCGTCAGGGTGGACAGATGAGCGGCACATGCATTATATAAGCTCAATGGAGGCTTCTTTCGTTGAGCAACTCTACAATCACGAACAAAATGATGCTGGCAACGGATTCAA ] [+] EMBL CF310862 [ TCTCCTCTCTCTCCTGCTTCTCTCTCTCCTCCTCTTCTTCACCTCCTCTTGTCTGTCCATAGATCGAGCCGCTCAGACCAAATCTTGGATGCGTTCTCTCTTCTTT CTCGCTGCGAGGGAGGCGGGTTGTTCGATCTGCGGGTGAAATCGAGCGAGAGATCCCTAGACCTCCCCCTACTTCTCTGTAGCTGTACATATTTCAGGAGAGGAAATTTTGGGCTGGTTTCTGATACGGTTCGAGAAGATTTTTGGCAATTTCTTCGGATTTTCCTCCCCTTGTGGGTTCCTTGGTTCATTGAGAAGAATCAAATGGGTGATGTGTCAGTCAATCGACCGATCAAGGCGGAGCCAGCTGCAGGCGGCATTGCTCAGGGCAATCGAATCCTGGACATGATGTCGTCAGGGTGGACAGATGAGCGGCACATGCATTATATAAGCTCAATGGAGGCTTCTTTCGTTGAGCAACTCTACAATCACGAACAAAATGATGCTGGCAACGGATTCAAGGTTCTCCGTGGTGGGGGTGTGGGGGAGAAACTCAAATTTGATCGGACCAGTGCTTGCTCACGGATCGGGAGAAAATACTGCCTGCCCGCAAG ] [+] EMBL CB659320 [ TCTCTCTCCTGCTTCTCTCTCTCCTCCTCTTCTTCACCTCCTCTTGTCTGTCCATAGATCGAGCCGCTCAGACCAAATCTTGGATGCGTTCTCTCTTCTTT CTCGCTGCGAGGGAGGCGGGTTGTTCGATCTGCGGGTGAAATCGAGCGAGAGATCCCTAGACCTCCCCCTACTTCTCTGTAGCTGTACATATTTCAAGAGAGGAAATTTTGGGCTGGTTTCTGATACGGTTCGAGAAGATTTTTGGCAATTTCTTCGGATTTTCCTCCCCTTGTGGGTTCCTTGGTTCATTGAGAAGAATCAAATGGGTGATGTGTCAGTCAATCGACCGATCAAGGCGGAGCCAGCTGCAGGCGGCATTGCTCAGGGCAATCGAATCCTGGACATGATGTCGTCAGGGTGGACAGATGAGCGGCACATGCATTATATAAGCTCAATGGAGGCTTCTTTCGTTGAGCAACTCTACAATCACGAACAAAATGATGCTGGCAACGGATTCAAGGTTCTCCGTGGT GGGGTGT GGGAGAAACTCAAATTTGATCGGACCAGTGCTTGCTCACGGATCGGGAGAAAATACTGCCTGCCCGCAAGCCCCTGGATCCAGCATTTCAGGCCGCGCGAATGCAGTAGCAATGCAAGGAATGATGCGGCGGAGGCTTTAGTGGGTGATCATGAATCTGGTATTCAGACTATCCAAGGGAGGACTCCGTTGTCACATGGAAGGGAGTGGGAGGCTTGCAAGG AAGAAAAAGCTGTTGGTGAAAGTACAGAGGTCTCTGATCAGAATT ] [+] EMBL CF323208 [ ATCGAGCCGCTCAGACCAAATCTTGGATGCGTTCTCTCTTCTTT CTCGCTGCGAGGGAGGCGGGTTGTTCGATCTGCGGGTGAAATCGAGCGAGAGATCCCTAGACCTCCCCCTACTTCTCTGTAGCTGTACATATTTCAAGAGAGGAAATTTTGGGCTGGTTTCTGATACGGTTCGAGAAGATTTTTGGCAATTTCTTCGGATTTTCCTCCCCTTGTGGGTTCCTTGGTTCATTGAGAAGAATCAAATGGGTGATGTGTCAGTCAATCGACCGATCAAGGCGGAGCCAGCTGCAGGCGGCATTGCTCAGGGCAATCGAATCCTGGACATGATGTCGTCAGGGTGGACAGATGAGCGGCACATGCATTATATAAGCTCAATGGAGGCTTCTTTCGTTGAGCAACTCTACAATCACGAACAAAATGATGCTGGCAACGGATTCA ] [+] EMBL BI118806 [ AAGAGAGGAAATTTTGGGCTGGTTTCTGATACGGTTCGAGAAGATTTTTGGCAATTTCTTCGGATTTTCCTCCCCTTGTGGGTTCCTTGGTTCATTGAGAAGAATCAAATGGGTGATGTGTCAGTCAATCGACCGATCAAGGCGGAGCCAGCTGCAGGCGGCATTGCTCAGGGCAATCGAATCCTGGACATGATGTCGTCAGGGTGGACAGATGAGCGGCACATGCATTATATAAGCTCAATGGAGGCTTCTTTCGTTGAGCAACTCTACAATCACGAACAAAATGATGCTGGCAACGGATTCAAGGTTCTCCGTGGT GGGGTGT GGGAGAAACTCAAATTTGATCGGACCAGTGCTTGCTCACGGATCGGGAGAAAATACTG CTG CCGCAAGCCCCTGGATTCAGCATCTCAGGCCGCGCGAATGCAGTAGCAATGCAAGGAATGATGCGGCGGAGGCTTTAGTGGGTGATCATGAATCTGGTATTCA ACTATCCAAGGGAGGACTCCGTTG ] [+] EMBL BI118810 [ AAGAGAGGAAATTTTGGGCTGGTTTCTGATACGGTTCGAGAAGATTTTTGGCAATTTCTTCGGATTTTCCTCCCCTTGTGGGTTCCTTGGTTCATTGAGAAGAATCAAATGGGTGATGTGTCAGTCAATCGACCGATCAAGGCGGAGCCAGCTGCAGGCGGCATTGCTCAGGGCAATCGAATCCTGGACATGATGTCGTCAGGGTGGACAGATGAGCGGCACATGCATTATATAAGCTCAATGGAGGCTTCTTTCGTTGAGCAACTCTACAGTCACGAACAAAATGATGCTGGCAACGGATTCAAGGTTCTCCGTGGT GGGGTGT GGGAGAAACTCAAATTTGATCGGACCAGTGCTTGCTCACGGATCGGGAGAAAATACTGCCTGCCCGCAAGCCCCTGGATTCAGCATTTCAGGCCGCGCGAATGCAGTAGCAATGCAAGGAATGATGCGGCGGAGGCTTTAGTGGGTGATCATGAATCTGGTATTCAGACTATCCAAGGGAGGACTCCGTTGTCACATGGAAGGGAGT GGAAGCTTGCAAGGAAAGAAAAACTTGTT ] [-] EMBL CB659321 [ ATCACGAACAAAATGATGCTGGCAACGGATTCAAGGTTCTCCGTGGT GGGGTGT GGGAGAAACTCAAATTTGATCGGACCAGTGCTTGCTCACGGATCGGGAGAAAATATTGCCTGCCCGCAAGCCCCTGGATCCAGCATTTCAGGCCGCGCGAATGCAGTAGCAATGCAAGGAATGATGCGGCGGAGGCTTTAGTGGGTGATCATGAATCTGGTATTCAGACTATCCAAGGGAGGACTCCGTTGTCACATGGAAGGGAGTGGGAGGCTTGCAAGG AAGAAAAAGCTGTTGGTGAAAGTACAGAGGTCTCTGATCAGAATTTTGCTGATGATGAGGCGGAGGTTGATGCAGAATCAAGCAAAGCATGCAAGAGAAGGAAGTTAAGAAGTGCTCTTACACGGAATTACCAAGTTGTTCCATCTGACAAACTGTTTGCTTCCACAAAAGCTGATGGAAGGAAAGATGCTCCAGAGTAAGGCATGCAAGAGTGGATCTGGTTGAATATGCAGTCAATGAGAACTGGATGAGTTAGTATTGGCGATTTAGTAGTATAGTTTTGAACTCTGTAGAGTCTGTCTTGGTAGAAGAATAATAGGATCGATCACTCACACCATGGTAGATTTATTGTTTGATCATATTGTTGTAATGG TTTTTTTTGTGTGTGTTGCTGTGTTCTGGCAACTGTTTGTTTGCAATGTGAGTAATATGTTT ] [+] EMBL CA767554 [ TTGTCACATGGAAGGGAGTGGGAGGCTTGCAAGG AAGAAAAAGCTGTTGGTGAAAGTACAGAGGTCTCTGATCAAAATTTTGCTGATGATGAGGCGGAGGTTGATGCAGAATCAAGCAAAGCATGCAAGAGAAGGAAGTTAAGAAGTGCTCTTACACGGAATTACCAAGTTGTTCCATCTGACAAACTGTTTGCTTCCACAAAAGCTGATGGAAGGAAAGATGCTCCAGAGTAAGGCATGCAAGAGTGGATCTGGTTGAATATGCAGTCAATGAGAACTGGATGAGTTAGTATTGGCGATTTAGTAGTATAGTTCTGAACTCTGTAGAGTCTGTCTTGGTAGAAGAATAATAGGATCGATCACTCACAACTTGGTAGATTTATTGTTTGATCATATTGATGTAATGG TTTTTTTTGTGTGTGTTGCTGTGTTCTGGCAACTGTTTGTTTGCAATGTGAGTAATATGTTTATGTTTGCCACAAGATGAGAATGATGCAAAGCCCATCATTCCTTTTGCCATAATTCCATTGTACATACATGTACTCCCATCATGATATTGAGAATGAAAGATCACCAATTTTGCAGAATGATATCCAACATCTGTA] [+] EMBL CA752827 [ cccgggcagGTACAGAGGTCTCTGATCAAAATTTTGCTGATGATGAGGCGGAGGTTGATGCAGAATCAAGCAAAGCATGCAAGAGAAGGAAGTTAAGAAGTGCTCTTACACGGAATTACCAAGTTGTTCCATCTGACAAACTGTTTGCTTCCACAAAAGCTGATGGAAGGAAAGATGCTCCAGAGTAAGGCATGCAAGAGTGGATCTGGTTGAATATGCAGTCAATGAGAACTGGATGAGTTAGTATTGGCGATTTAATAGTATAGTTCTGAACTCTGTAGAGTCTGTCTTGGTAGAAGAATAATAGGATCGATCACTCACAACTTGGTAGATTTATTGTTTGATCATATTGATGTAATGG TTTTTTTTGTGTGTGTTGCTGTGTTCTGGCAACTGTTTGTTTGCAATGTGAGTAATATGTTTATGTTTGCCACAAGATGAGAATGATGCAAAGCCCATCATTCCTTTTGCCATAA ] [-] EMBL CF310863 [ TGCTGATGATGAGGCGGAGGTTGATGCAGAATCAAGCAAAGCATGCAAGAGAAGGAAGTTAAGAAGTGCTCTTACACGGAATTACCAAGTTGTTCCATCTGACAAACTGTTTGCTTCCACAAAAGTTGATGGAAGGAAAGATGCTCCAGAGTAAGGCATGCAAGAGTGGATCTGGTTGAATATGCAGTCAATGAGAACTGGATGAGTTAGTATTGGCGATTTAGTAGTATAGTTCTGAACTCTGTAGAGTCTGTCTTGGTAGAAGAATAATAGGATCGATCACTCACAACATGGTAGATTTATTGTTTGATCATATTGTTGTAATGG TTTTTTTTGTGTGTGTTGCTGTGTTCTGGCAACTGTTTGTTTGCAATGTGAGTAATATGTTTATGTTTGCCACAAGATGAGAATGATGCAAAGCCCATCATTCCTTTTGCCATAATTCCATTGTACATACATGTACTCCCATCATGATATTGAGAATGAAAGATCGCCAATTTTGCAAAAaaaaa ] consensusID : consensus_14486#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 744 fasta sequence [GGGAATAGCTGCGGCGCCCACATCAGAATGGGAGGTTCTTTCGTTGAGCAACTCTACAATCACGAACAACATGATGCTGGCAACGGATCAAGGTTCTCCGAGGTGGTGGTGTGGGATGAAACTCAAATATGATCGGACCAGTGCTTGCTCACGGATCGGGAGAAAATACTGGCTGCCCGCAAGCCCCTGGATCCAGGATTTCAGGCCACGCGAATGCAGTAGCAACTGCAAGGAATGATGCGGCGGCAGGCTTTAGTGGGTGATCATGAATCTGGTATTCAGACTATCCAAAGGGAGCGACTCCGCTTGTCACCTGGACAGGGAGTGGGAGGCTTGCAAGGCTAACAAAAAGCTGTTGGTGAAAGTACACAGGTCTCTGATCAGAATTTTGCTGATGATGAGGGGGAGGTTGATGCTAGAATCTCAGCATGGCATGCAAGAGATAGGAAGTGTAAGAAGTGCGTCTGACACGGACATTACCAAGTGGTCTCCATCTGACAAACTGTTTGCTTTCCACAATAAGCTGATGGAAGGAAAGATGCTCCATAGTAAGGCGATGCCAGAGTGGATCTGGTTGAGTATGCAGCCGATGAGAACTGGATGACTAACTATCGGCGACCTGAGTAGTATACTCCTGAACTCTGTAGAGTCTGTCTAGGTAGAACAGTAATAGGATCGATCACTCACGGCTTGGTAGATGAATGGTTCGATCCTCTTGCTGTAGTGGGTAAACCGGCGTGTGTC] [+] EMBL CB964487 [GGGAATAGCTGCGGCGCCCACATCAGAATGGGAGGTTCTTTCGTTGAGCAACTCTACAATCACGAACAACATGATGCTGGCAACGGATCAAGGTTCTCCGAGGTGGTGGTGTGGGATGAAACTCAAATATGATCGGACCAGTGCTTGCTCACGGATCGGGAGAAAATACTGGCTGCCCGCAAGCCCCTGGATCCAGGATTTCAGGCCACGCGAATGCAGTAGCAACTGCAAGGAATGATGCGGCGGCAGGCTTTAGTGGGTGATCATGAATCTGGTATTCAGACTATCCAAAGGGAGCGACTCCGCTTGTCACCTGGACAGGGAGTGGGAGGCTTGCAAGGCTAACAAAAAGCTGTTGGTGAAAGTACACAGGTCTCTGATCAGAATTTTGCTGATGATGAGGGGGAGGTTGATGCTAGAATCTCAGCATGGCATGCAAGAGATAGGAAGTGTAAGAAGTGCGTCTGACACGGACATTACCAAGTGGTCTCCATCTGACAAACTGTTTGCTTTCCACAATAAGCTGATGGAAGGAAAGATGCTCCATAGTAAGGCGATGCCAGAGTGGATCTGGTTGAGTATGCAGCCGATGAGAACTGGATGACTAACTATCGGCGACCTGAGTAGTATACTCCTGAACTCTGTAGAGTCTGTCTAGGTAGAACAGTAATAGGATCGATCACTCACGGCTTGGTAGATGAATGGTTCGATCCTCTTGCTGTAGTGGGTAAACCGGCGTGTGTC] consensusID : consensus_14486#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 714 fasta sequence [TCACGGTTTTGTCTCCCCTTGTGGGGTCTTGGCGAGTACTCAATTTGATCGGACCCGTGCTTGCTCNCGGATCGGTGAGAAATACTGCCTGCCCGCAAGCCCTGGATCCACCATTTCAGCCGCGCGAATCAGTAGCAATGCAAGGAATGATGCGGCGGAGGCTTTAGCTGGGTGATCATGAATCTGGTATTCAGACTATCCACAGGGAGGACTCCGTTGTCACATGGAAGGGAGTGGGAGGCTTGCACAGGAAGAAAAANCTGTTGGTGAAAGTACAGAGGTCTCTGATCAGAATTTTGCTCGATGATGAGGCGGAGGTTGATGCAGAATCACAGCCAAGCATGCAAGAGAAGGAAGTTAAGAAGTGCTCTTACACGGAATTACCCAGTTGTTCCATCTGACNAACTGTTTGCTTCCACCAAAGCTGATGGAAGGAAAGATGCTCCAGAGTAAGGCATGCAAGAGTGGATCTGGTTGAATATGCAGTCCATGAGAACTGGATGAGTTAGTATTGGCGATTTAGTAGTATAGTTCTGAACTCTGTAGAGTCTGTCTTGGTAGAAGAATAATAGGATCGATCACTCACAACTTGGTAGATTTATTGTTTGATCATATTGATGTAATGGTTTTTTTTGTGTGTGTTGCTGTGTTCTGGCAACTGTTTGTTTGCAATGTGAGTAATATGTTTATGTTTGCCACAAAAAAAAAAAAAAA] [+] EMBL BQ908376 [TCACGGTTTTGTCTCCCCTTGTGGGGTCTTGGCGAGTACTCAATTTGATCGGACCCGTGCTTGCTCNCGGATCGGTGAGAAATACTGCCTGCCCGCAAGCCCTGGATCCACCATTTCAGCCGCGCGAATCAGTAGCAATGCAAGGAATGATGCGGCGGAGGCTTTAGCTGGGTGATCATGAATCTGGTATTCAGACTATCCACAGGGAGGACTCCGTTGTCACATGGAAGGGAGTGGGAGGCTTGCACAGGAAGAAAAANCTGTTGGTGAAAGTACAGAGGTCTCTGATCAGAATTTTGCTCGATGATGAGGCGGAGGTTGATGCAGAATCACAGCCAAGCATGCAAGAGAAGGAAGTTAAGAAGTGCTCTTACACGGAATTACCCAGTTGTTCCATCTGACNAACTGTTTGCTTCCACCAAAGCTGATGGAAGGAAAGATGCTCCAGAGTAAGGCATGCAAGAGTGGATCTGGTTGAATATGCAGTCCATGAGAACTGGATGAGTTAGTATTGGCGATTTAGTAGTATAGTTCTGAACTCTGTAGAGTCTGTCTTGGTAGAAGAATAATAGGATCGATCACTCACAACTTGGTAGATTTATTGTTTGATCATATTGATGTAATGGTTTTTTTTGTGTGTGTTGCTGTGTTCTGGCAACTGTTTGTTTGCAATGTGAGTAATATGTTTATGTTTGCCACAAAAAAAAAA ] [-] EMBL CF308244 [ AGAGAAGGAAGTTAAGAAGTGCTCTTACACGGAATTACCAAGTTGTTCCATCTGACAAACTGTTTGCTTCCACAAAAGCTGATGGAAGGAAAGATGCTCCAGAGTAAGGCATGCAAGAGTGGATCTGGTTGAATATGCAGTCAATGAGAACTGGATGAGTTAGTATTGGCGATTTAGTAGTATAGTTCTGAACTCTGTAGAGTCTGTCTTGGAAAAAAAATAATAGGATCGATCACTCCCAACATGGTAGATTTATTGTTTGATCATATTGTTGTAATGGTTTTTTTTGTGTGTGTTGCTGTGTTCTGGCAACTGTTTGTTTGCAATGTGAGTAATATGTTTATGTTTGCCAAAAAAAAAAAAAAAAA] consensusID : consensus_14486#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 309 fasta sequence [TCTCCCTTTGCTTCTTCCGTTGCAATTCCATTCTCCTCTCTCTCCTGCTTCTCTCTCTCCTCCTCTTCTTCACCTCCTCTTGTCTGTCCATAGATCGAGCCGCTCAGACCAAATCTTGGATGCGTTCTCTCTTCTTTCTCGCTGCGAGGGAGGGCGGGTTGTTCGATCTGCGGGTGAAATCGAGCGAGAGCTGTACATATTTCAAGAGAGGAAATTTTGGGCTGGTTTCTGATACGGTTCGAGAAGATTTTTGGCAATTTCTTCGGATTTTCCTCCCCTTGTGGGTTCCTTGGTTCATTGAGAAGAATA] [+] EMBL CF308243 [TCTCCCTTTGCTTCTTCCGTTGCAATTCCATTCTCCTCTCTCTCCTGCTTCTCTCTCTCCTCCTCTTCTTCACCTCCTCTTGTCTGTCCATAGATCGAGCCGCTCAGACCAAATCTTGGATGCGTTCTCTCTTCTTTCTCGCTGCGAGGGAGGGCGGGTTGTTCGATCTGCGGGTGAAATCGAGCGAGAGCTGTACATATTTCAAGAGAGGAAATTTTGGGCTGGTTTCTGATACGGTTCGAGAAGATTTTTGGCAATTTCTTCGGATTTTCCTCCCCTTGTGGGTTCCTTGGTTCATTGAGAAGAATA] consensusID : consensus_14486#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 217 fasta sequence [CACGAGACNTCTTGGTGNATTTATGTTTGATCATNTTNATGTANTGGTTTNTTTTGTGTGTGTTGCTGTGTTCTGGCAACTGTTTGTTTGCAANGTGAGTAATATGTTTATGTTTGCCACAAGATGAGAATGATGCAAAGCCCNTCATTCCTTTTGCCATAATTCCATTGTACATACATGTACTCCCATCATGATATTGANAATGAAAGATCACCAA] [+] EMBL AA751511 [CACGAGACNTCTTGGTGNATTTATGTTTGATCATNTTNATGTANTGGTTTNTTTTGTGTGTGTTGCTGTGTTCTGGCAACTGTTTGTTTGCAANGTGAGTAATATGTTTATGTTTGCCACAAGATGAGAATGATGCAAAGCCCNTCATTCCTTTTGCCATAATTCCATTGTACATACATGTACTCCCATCATGATATTGANAATGAAAGATCACCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14486#1 ------------------------------------------------------------ consensus_14486#2 ------------------------------------------------------------ consensus_14486#4 ------------------------------------------------------------ consensus_14486#0 TTTGCTTCTTCCGTTGCAATTCCATTCTCCTCTCTCTCCTGCTTCTCTCTCTCCTCCTCT 60 consensus_14486#3 ------------------------------------------------------------ consensus_14486#1 ------------------------------------------------------------ consensus_14486#2 ------------------------------------------------------------ consensus_14486#4 ------------------------------------------------------------ consensus_14486#0 TCTTCACCTCCTCTTGTCTGTCCATAGATCGAGCCGCTCAGACCAAATCTTGGATGCGTT 120 consensus_14486#3 ------------------------------------------------------------ consensus_14486#1 ------------------------------------------------------------ consensus_14486#2 ------------------------------------------------------------ consensus_14486#4 ------------------------------------------------------------ consensus_14486#0 CTCTCTTCTTTCTCGCTGCGAGGGAGGCGGGTTGTTCGATCTGCGGGTGAAATCGAGCGA 180 consensus_14486#3 ------------------------------------------------------------ consensus_14486#1 ------------------------------------------------------------ consensus_14486#2 ------------------------------------------------------------ consensus_14486#4 ------------------------------------------------------------ consensus_14486#0 GAGATCCCTAGACCTCCCCCTACTTCTCTGTAGCTGTACATATTTCAAGAGAGGAAATTT 240 consensus_14486#3 ------------------------------------------------------------ consensus_14486#1 ------------------------------------------------------------ consensus_14486#2 ------------------------------------------------------------ consensus_14486#4 ------------------------------------------------------------ consensus_14486#0 TGGGCTGGTTTCTGATACGGTTCGAGAAGATTTTTGGCAATTTCTTCGGATTTTCCTCCC 300 consensus_14486#3 ------------------------------------------------------------ consensus_14486#1 ------------------------------------------------------------ consensus_14486#2 ------------------------------------------------------------ consensus_14486#4 ------------------------------------------------------------ consensus_14486#0 CTTGTGGGTTCCTTGGTTCATTGAGAAGAATCAAATGGGTGATGTGTCAGTCAATCGACC 360 consensus_14486#3 ------------------------------------------------------------ consensus_14486#1 ------------------------------------------------------------ consensus_14486#2 ------------------------------------------------------------ consensus_14486#4 ------------------------------------------------------------ consensus_14486#0 GATCAAGGCGGAGCCAGCTGCAGGCGGCATTGCTCAGGGCAATCGAATCCTGGACATGAT 420 consensus_14486#3 ------------------------------------------------------------ consensus_14486#1 -------------------GGGAATAGCTGCGGCGCCCACATCAGAATGGGAGGTTCTTT 41 consensus_14486#2 ------------------------------------------------------------ consensus_14486#4 ------------------------------------------------------------ consensus_14486#0 GTCGTCAGGGTGGACAGATGAGCGGCACATGCATTATATAAGCTCAATGGAGGCTTCTTT 480 consensus_14486#3 ------------------------------------------------------------ consensus_14486#1 CGTTGAGCAACTCTACAATCACGAACAACATGATGCTGGCAACGGATCAAGGTTCTCCGA 101 consensus_14486#2 ---------------------------------------TCACGGTTTT--GTCTCCCCT 19 consensus_14486#4 ------------------------------------------------------------ consensus_14486#0 CGTTGAGCAACTCTACAATCACGAACAAAATGATGCTGGCAACGGATTCAAGGTTCTCCG 540 consensus_14486#3 ------------------------------------------------------------ consensus_14486#1 GGTGGTGGTGTGGGATGAAACTCAAATATGATCGGACCAGTGCTTGCTCACGGATCGGGA 161 consensus_14486#2 TGTGG-GGTCTTGGCGAGTACTCAA-TTTGATCGGACCCGTGCTTGCTCNCGGATCGGTG 77 consensus_14486#4 ------------------------------------------------------------ consensus_14486#0 TGGTGGGGTGTGGGA-GAAACTCAAATTTGATCGGACCAGTGCTTGCTCACGGATCGGGA 599 consensus_14486#3 ------------------------------------------------------------ consensus_14486#1 GAAAATACTGGCTGCCCGCAAGCCCCTGGATCCAGGATTTCAGGCCACGCGAATGCAGTA 221 consensus_14486#2 AGAAATACTGCCTGCCCGCAAGCCC-TGGATCCACCATTTCAG-CCGCGCGAAT-CAGTA 134 consensus_14486#4 ------------------------------------------------------------ consensus_14486#0 GAAAATACTGCCTGCCCGCAAGCCCCTGGATCCAGCATTTCAGGCCGCGCGAATGCAGTA 659 consensus_14486#3 ------------------------------------------------------------ consensus_14486#1 GCAACTGCAAGGAATGATGCGGCGGCAGGCTTTAG-TGGGTGATCATGAATCTGGTATTC 280 consensus_14486#2 GCAA-TGCAAGGAATGATGCGGCGG-AGGCTTTAGCTGGGTGATCATGAATCTGGTATTC 192 consensus_14486#4 ------------------------------------------------------------ consensus_14486#0 GCAA-TGCAAGGAATGATGCGGCGG-AGGCTTTAG-TGGGTGATCATGAATCTGGTATTC 716 consensus_14486#3 ---------TCTCCCTTTGCTTCTT-CCGTTGCAATTCCATTCTCCTCTCTCTCCTGCTT 50 consensus_14486#1 AGACTATCCAAAGGGAGCGACTCCGCTTGTCACCTGGACAGGGAGTGGGAGGCTTGCAAG 340 consensus_14486#2 AGACTATCCACAGGGAG-GACTCCG-TTGTCACATGGA-AGGGAGTGGGAGGCTTGCACA 249 consensus_14486#4 ---------------------------------------------CACGAGACNT-CTTG 14 consensus_14486#0 AGACTATCCAAGGGAGG--ACTCCG-TTGTCACATGGA-AGGGAGTGGGAGGCTTGCAAG 772 consensus_14486#3 CTCTCTCTCCTCCTCTTCTTCACCTCCTCTTGTCTGTCCATAGATCGAGCCGCTCAGACC 110 * * consensus_14486#1 GCTAACAAAAAGCTGTTGGTGAAAGTACACAGGT-CTCTGATCAGAATTTTGCT-GATGA 398 consensus_14486#2 GG-AAGAAAAANCTGTTGGTGAAAGTACAGAGGT-CTCTGATCAGAATTTTGCTCGATGA 307 consensus_14486#4 GTGNATTTATGTTTGATCATNTTNATGTANTGGT-TTNTTTTGTGTGTGTTGCT--GTGT 71 consensus_14486#0 G--AAGAAAAAGCTGTTGGTGAAAGTACAGAGGT-CTCTGATCAGAATTTTGCT-GATGA 828 consensus_14486#3 AA-ATCTTGGATGCGTTCTCTCTTCTTTCTCGCTGCGAGGGAGGGCGGGTTGTTCGAT-C 168 * * * * * * *** * * consensus_14486#1 TGAGGGGGAGGTTGAT--GCTAGAATCTCA-GCATGGC-ATGCAAGAGAT--AGGAAGTG 452 consensus_14486#2 TGAGGCGGAGGTTGAT--GC-AGAATCACA-GCCAAGC-ATGCAAGAGA---AGGAAGT- 358 consensus_14486#4 TCTGGCAACTGTTTGTTTGCAANGTGAGTA-ATATGTTTATGTTTGCCAC--AAGATGAG 128 consensus_14486#0 TGAGGCGGAGGTTGAT--GC-AGAATCA-A-GCAAAGC-ATGCAAGAGA---AGGAAGT- 878 consensus_14486#3 TGCGGGTGAAATCGA---GCGAGAGCTGTACATATTTCAAGAGAGGAAATTTTGGGCTGG 225 * ** * ** * * * * * * consensus_14486#1 TAAGAAGTGCG-TCTGACACGGACATTACCAAGTGGTCTCCATCTGACAAACTGTTTGCT 511 consensus_14486#2 TAAGAAGTGC--TCTTACACGGA-ATTACCCAGTTGT-TCCATCTGACNAACTGTTTGCT 414 consensus_14486#4 AATGATGCAAAGCCCNTCATTCCTTTTGCCA--TAAT-TCCATTGTACATAC-ATGTACT 184 consensus_14486#0 TAAGAAGTGC--TCTTACACGGA-ATTACCAAGTTGT-TCCATCTGACAAACTGTTTGCT 934 consensus_14486#3 TTTCTGATACGGTTCGAGAAGATTTTTGGCAATTTCTTCGGATTTTCCTCCCCTTGTGGG 285 * ** * * * ** * * * * consensus_14486#1 TTCCACAATAAGCTGATGGAAGGAAAGATGCTCCATAGTAAGGCGATGCCAGAGTGGATC 571 consensus_14486#2 TCCACCAA--AGCTGATGGAAGGAAAGATGCTCCAGAGTAAGGC-ATGCAAGAGTGGATC 471 consensus_14486#4 CCCATCATGATATTGA--NAATGAAAGATCACCAA------------------------- 217 consensus_14486#0 TCCACAAA--AGCTGATGGAAGGAAAGATGCTCCAGAGTAAGGC-ATGCAAGAGTGGATC 991 consensus_14486#3 TTCCTTGGTTCATTGA--GAAGAATA---------------------------------- 309 * *** ** * * consensus_14486#1 TGGTTGAGTATGCAGCCGATGAGAACTGGATGACTAACTATCGGCGACCTGAGTAGTATA 631 consensus_14486#2 TGGTTGAATATGCAGTCCATGAGAACTGGATGAGTTAGTATTGGCGATTT-AGTAGTATA 530 consensus_14486#4 ------------------------------------------------------------ consensus_14486#0 TGGTTGAATATGCAGTCAATGAGAACTGGATGAGTTAGTATTGGCGATTT-AGTAGTATA 1050 consensus_14486#3 ------------------------------------------------------------ consensus_14486#1 CTCCTGAACTCTGTAGAGTCTGTCTAGGTAGAACAGTAATAGGATCGATCACTCACGGCT 691 consensus_14486#2 GTTCTGAACTCTGTAGAGTCTGTCTTGGTAGAAGAATAATAGGATCGATCACTCACAACT 590 consensus_14486#4 ------------------------------------------------------------ consensus_14486#0 GTTCTGAACTCTGTAGAGTCTGTCTTGGTAGAAGAATAATAGGATCGATCACTCACAACA 1110 consensus_14486#3 ------------------------------------------------------------ consensus_14486#1 TGGTAGATGAATGGTTCGATCCTCTTGCTGTAGTGGGTAAACCGGCGTGTGTC------- 744 consensus_14486#2 TGGTAGATTTATTGTTTGATCATATTGATGTAATGGTTTTTTTTGTGTGTGTTGCTGTGT 650 consensus_14486#4 ------------------------------------------------------------ consensus_14486#0 TGGTAGATTTATTGTTTGATCATATTGTTGTAATGGTTTTTTTTGTGTGTGTTGCTGTGT 1170 consensus_14486#3 ------------------------------------------------------------ consensus_14486#1 ------------------------------------------------------------ consensus_14486#2 TCTGGCAACTGTTTGTTTGCAATGTGAGTAATATGTTTATGTTTGCCACAAAAAAAAAAA 710 consensus_14486#4 ------------------------------------------------------------ consensus_14486#0 TCTGGCAACTGTTTGTTTGCAATGTGAGTAATATGTTTATGTTTGCCACAAGATGAGAAT 1230 consensus_14486#3 ------------------------------------------------------------ consensus_14486#1 ------------------------------------------------------------ consensus_14486#2 AAAA-------------------------------------------------------- 714 consensus_14486#4 ------------------------------------------------------------ consensus_14486#0 GATGCAAAGCCCATCATTCCTTTTGCCATAATTCCATTGTACATACATGTACTCCCATCA 1290 consensus_14486#3 ------------------------------------------------------------ consensus_14486#1 ------------------------------------------------------ consensus_14486#2 ------------------------------------------------------ consensus_14486#4 ------------------------------------------------------ consensus_14486#0 TGATATTGAGAATGAAAGATCACCAATTTTGCAGAATGATATCCAACATCTGTA 1344 consensus_14486#3 ------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||