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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14486#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1344 fasta sequence
[TTTGCTTCTTCCGTTGCAATTCCATTCTCCTCTCTCTCCTGCTTCTCTCTCTCCTCCTCTTCTTCACCTCCTCTTGTCTGTCCATAGATCGAGCCGCTCAGACCAAATCTTGGATGCGTTCTCTCTTCTTT-CTCGCTGCGAGGGAGGCGGGTTGTTCGATCTGCGGGTGAAATCGAGCGAGAGATCCCTAGACCTCCCCCTACTTCTCTGTAGCTGTACATATTTCAAGAGAGGAAATTTTGGGCTGGTTTCTGATACGGTTCGAGAAGATTTTTGGCAATTTCTTCGGATTTTCCTCCCCTTGTGGGTTCCTTGGTTCATTGAGAAGAATCAAATGGGTGATGTGTCAGTCAATCGACCGATCAAGGCGGAGCCAGCTGCAGGCGGCATTGCTCAGGGCAATCGAATCCTGGACATGATGTCGTCAGGGTGGACAGATGAGCGGCACATGCATTATATAAGCTCAATGGAGGCTTCTTTCGTTGAGCAACTCTACAATCACGAACAAAATGATGCTGGCAACGGATTCAAGGTTCTCCGTGGT-GGGGTGT--GGGAGAAACTCAAATTTGATCGGACCAGTGCTTGCTCACGGATCGGGAGAAAATACTGCCTGCCCGCAAGCCCCTGGATCCAGCATTTCAGGCCGCGCGAATGCAGTAGCAATGCAAGGAATGATGCGGCGGAGGCTTTAGTGGGTGATCATGAATCTGGTATTCAGACTATCCAAGGGAGGACTCCGTTGTCACATGGAAGGGAGTGGGAGGCTTGCAAGG-AAGAAAAAGCTGTTGGTGAAAGTACAGAGGTCTCTGATCAGAATTTTGCTGATGATGAGGCGGAGGTTGATGCAGAATCAAGCAAAGCATGCAAGAGAAGGAAGTTAAGAAGTGCTCTTACACGGAATTACCAAGTTGTTCCATCTGACAAACTGTTTGCTTCCACAAAAGCTGATGGAAGGAAAGATGCTCCAGAGTAAGGCATGCAAGAGTGGATCTGGTTGAATATGCAGTCAATGAGAACTGGATGAGTTAGTATTGGCGATTTAGTAGTATAGTTCTGAACTCTGTAGAGTCTGTCTTGGTAGAAGAATAATAGGATCGATCACTCACAACATGGTAGATTTATTGTTTGATCATATTGTTGTAATGG-TTTTTTTTGTGTGTGTTGCTGTGTTCTGGCAACTGTTTGTTTGCAATGTGAGTAATATGTTTATGTTTGCCACAAGATGAGAATGATGCAAAGCCCATCATTCCTTTTGCCATAATTCCATTGTACATACATGTACTCCCATCATGATATTGAGAATGAAAGATCACCAATTTTGCAGAATGATATCCAACATCTGTA]
[+] EMBL AK067400 [TTTGCTTCTTCCGTTGCAATTCCATTCTCCTCTCTCTCCTGCTTCTCTCTCTCCTCCTCTTCTTCACCTCCTCTTGTCTGTCCATAGATCGAGCCGCTCAGACCAAATCTTGGATGCGTTCTCTCTTCTTT CTCGCTGCGAGGGAGGCGGGTTGTTCGATCTGCGGGTGAAATCGAGCGAGAGATCCCTAGACCTCCCCCTACTTCTCTGTAGCTGTACATATTTCAAGAGAGGAAATTTTGGGCTGGTTTCTGATACGGTTCGAGAAGATTTTTGGCAATTTCTTCGGATTTTCCTCCCCTTGTGGGTTCCTTGGTTCATTGAGAAGAATCAAATGGGTGATGTGTCAGTCAATCGACCGATCAAGGCGGAGCCAGCTGCAGGCGGCATTGCTCAGGGCAATCGAATCCTGGACATGATGTCGTCAGGGTGGACAGATGAGCGGCACATGCATTATATAAGCTCAATGGAGGCTTCTTTCGTTGAGCAACTCTACAATCACGAACAAAATGATGCTGGCAACGGATTCAAGGTTCTCCGTGGT GGGGTGT GGGAGAAACTCAAATTTGATCGGACCAGTGCTTGCTCACGGATCGGGAGAAAATACTGCCTGCCCGCAAGCCCCTGGATCCAGCATTTCAGGCCGCGCGAATGCAGTAGCAATGCAAGGAATGATGCGGCGGAGGCTTTAGTGGGTGATCATGAATCTGGTATTCAGACTATCCAAGGGAGGACTCCGTTGTCACATGGAAGGGAGTGGGAGGCTTGCAAGG AAGAAAAAGCTGTTGGTGAAAGTACAGAGGTCTCTGATCAGAATTTTGCTGATGATGAGGCGGAGGTTGATGCAGAATCAAGCAAAGCATGCAAGAGAAGGAAGTTAAGAAGTGCTCTTACACGGAATTACCAAGTTGTTCCATCTGACAAACTGTTTGCTTCCACAAAAGCTGATGGAAGGAAAGATGCTCCAGAGTAAGGCATGCAAGAGTGGATCTGGTTGAATATGCAGTCAATGAGAACTGGATGAGTTAGTATTGGCGATTTAGTAGTATAGTTCTGAACTCTGTAGAGTCTGTCTTGGTAGAAGAATAATAGGATCGATCACTCACAACATGGTAGATTTATTGTTTGATCATATTGTTGTAATGGTTTTTTTTTGTGTGTGTTGCTGTGTTCTGGCAACTGTTTGTTTGCAATGTGAGTAATATGTTTATGTTTGCCACAAGATGAGAATGATGCAAAGCCCATCATTCCTTTTGCCATAATTCCATTGTACATACATGTACTCCCATCATGATATTGAGAATGAAAGATCACCAATT ]
[+] EMBL CF282309 [ CGTTGCAATTCCATTCTCCTCTCTCTCCTGCTTCTCTCTCTCCTCCTCTTCTTCACCTCCTATCGTCTGCCCATACATCGAGCCGCTCACA CAAATCTTGTATGCGTTCTCTCTTCTTTACTCGCTGCGAGGGAGGCGGGTCGTTCTATCTGCGGGTGAAATCTAGCGAGAGATCCCTAGACCTCCCCCTACTTCTATGTAGCTGTACATATTTCAAGAGAGGAAATTATGGGCTGGTCTCTGATACAGCTCGAGAAGATTTTCGGCAATTTCTTCGGATTTTCCTCCCCTTGTGGGTTCCTTGGTTCATAGAGAATAATCAACAGGGAGATGTGTCAGGCAATCGACCGATCAAGGCGGAGCCATCTGCAGGCGGCATTGCTCAAGGCAATCGAATCCTGGACATGATGTCGTCAGGGTGGACAGATGAGCGGCACATGCATTATATAAGCTCAATGGAGGCTTCTTTCGTTGAGCAACTCTACAATCACGAACAAAATGATGCTGGCAACGGATTCAA ]
[+] EMBL CF310862 [ TCTCCTCTCTCTCCTGCTTCTCTCTCTCCTCCTCTTCTTCACCTCCTCTTGTCTGTCCATAGATCGAGCCGCTCAGACCAAATCTTGGATGCGTTCTCTCTTCTTT CTCGCTGCGAGGGAGGCGGGTTGTTCGATCTGCGGGTGAAATCGAGCGAGAGATCCCTAGACCTCCCCCTACTTCTCTGTAGCTGTACATATTTCAGGAGAGGAAATTTTGGGCTGGTTTCTGATACGGTTCGAGAAGATTTTTGGCAATTTCTTCGGATTTTCCTCCCCTTGTGGGTTCCTTGGTTCATTGAGAAGAATCAAATGGGTGATGTGTCAGTCAATCGACCGATCAAGGCGGAGCCAGCTGCAGGCGGCATTGCTCAGGGCAATCGAATCCTGGACATGATGTCGTCAGGGTGGACAGATGAGCGGCACATGCATTATATAAGCTCAATGGAGGCTTCTTTCGTTGAGCAACTCTACAATCACGAACAAAATGATGCTGGCAACGGATTCAAGGTTCTCCGTGGTGGGGGTGTGGGGGAGAAACTCAAATTTGATCGGACCAGTGCTTGCTCACGGATCGGGAGAAAATACTGCCTGCCCGCAAG ]
[+] EMBL CB659320 [ TCTCTCTCCTGCTTCTCTCTCTCCTCCTCTTCTTCACCTCCTCTTGTCTGTCCATAGATCGAGCCGCTCAGACCAAATCTTGGATGCGTTCTCTCTTCTTT CTCGCTGCGAGGGAGGCGGGTTGTTCGATCTGCGGGTGAAATCGAGCGAGAGATCCCTAGACCTCCCCCTACTTCTCTGTAGCTGTACATATTTCAAGAGAGGAAATTTTGGGCTGGTTTCTGATACGGTTCGAGAAGATTTTTGGCAATTTCTTCGGATTTTCCTCCCCTTGTGGGTTCCTTGGTTCATTGAGAAGAATCAAATGGGTGATGTGTCAGTCAATCGACCGATCAAGGCGGAGCCAGCTGCAGGCGGCATTGCTCAGGGCAATCGAATCCTGGACATGATGTCGTCAGGGTGGACAGATGAGCGGCACATGCATTATATAAGCTCAATGGAGGCTTCTTTCGTTGAGCAACTCTACAATCACGAACAAAATGATGCTGGCAACGGATTCAAGGTTCTCCGTGGT GGGGTGT GGGAGAAACTCAAATTTGATCGGACCAGTGCTTGCTCACGGATCGGGAGAAAATACTGCCTGCCCGCAAGCCCCTGGATCCAGCATTTCAGGCCGCGCGAATGCAGTAGCAATGCAAGGAATGATGCGGCGGAGGCTTTAGTGGGTGATCATGAATCTGGTATTCAGACTATCCAAGGGAGGACTCCGTTGTCACATGGAAGGGAGTGGGAGGCTTGCAAGG AAGAAAAAGCTGTTGGTGAAAGTACAGAGGTCTCTGATCAGAATT ]
[+] EMBL CF323208 [ ATCGAGCCGCTCAGACCAAATCTTGGATGCGTTCTCTCTTCTTT CTCGCTGCGAGGGAGGCGGGTTGTTCGATCTGCGGGTGAAATCGAGCGAGAGATCCCTAGACCTCCCCCTACTTCTCTGTAGCTGTACATATTTCAAGAGAGGAAATTTTGGGCTGGTTTCTGATACGGTTCGAGAAGATTTTTGGCAATTTCTTCGGATTTTCCTCCCCTTGTGGGTTCCTTGGTTCATTGAGAAGAATCAAATGGGTGATGTGTCAGTCAATCGACCGATCAAGGCGGAGCCAGCTGCAGGCGGCATTGCTCAGGGCAATCGAATCCTGGACATGATGTCGTCAGGGTGGACAGATGAGCGGCACATGCATTATATAAGCTCAATGGAGGCTTCTTTCGTTGAGCAACTCTACAATCACGAACAAAATGATGCTGGCAACGGATTCA ]
[+] EMBL BI118806 [ AAGAGAGGAAATTTTGGGCTGGTTTCTGATACGGTTCGAGAAGATTTTTGGCAATTTCTTCGGATTTTCCTCCCCTTGTGGGTTCCTTGGTTCATTGAGAAGAATCAAATGGGTGATGTGTCAGTCAATCGACCGATCAAGGCGGAGCCAGCTGCAGGCGGCATTGCTCAGGGCAATCGAATCCTGGACATGATGTCGTCAGGGTGGACAGATGAGCGGCACATGCATTATATAAGCTCAATGGAGGCTTCTTTCGTTGAGCAACTCTACAATCACGAACAAAATGATGCTGGCAACGGATTCAAGGTTCTCCGTGGT GGGGTGT GGGAGAAACTCAAATTTGATCGGACCAGTGCTTGCTCACGGATCGGGAGAAAATACTG CTG CCGCAAGCCCCTGGATTCAGCATCTCAGGCCGCGCGAATGCAGTAGCAATGCAAGGAATGATGCGGCGGAGGCTTTAGTGGGTGATCATGAATCTGGTATTCA ACTATCCAAGGGAGGACTCCGTTG ]
[+] EMBL BI118810 [ AAGAGAGGAAATTTTGGGCTGGTTTCTGATACGGTTCGAGAAGATTTTTGGCAATTTCTTCGGATTTTCCTCCCCTTGTGGGTTCCTTGGTTCATTGAGAAGAATCAAATGGGTGATGTGTCAGTCAATCGACCGATCAAGGCGGAGCCAGCTGCAGGCGGCATTGCTCAGGGCAATCGAATCCTGGACATGATGTCGTCAGGGTGGACAGATGAGCGGCACATGCATTATATAAGCTCAATGGAGGCTTCTTTCGTTGAGCAACTCTACAGTCACGAACAAAATGATGCTGGCAACGGATTCAAGGTTCTCCGTGGT GGGGTGT GGGAGAAACTCAAATTTGATCGGACCAGTGCTTGCTCACGGATCGGGAGAAAATACTGCCTGCCCGCAAGCCCCTGGATTCAGCATTTCAGGCCGCGCGAATGCAGTAGCAATGCAAGGAATGATGCGGCGGAGGCTTTAGTGGGTGATCATGAATCTGGTATTCAGACTATCCAAGGGAGGACTCCGTTGTCACATGGAAGGGAGT GGAAGCTTGCAAGGAAAGAAAAACTTGTT ]
[-] EMBL CB659321 [ ATCACGAACAAAATGATGCTGGCAACGGATTCAAGGTTCTCCGTGGT GGGGTGT GGGAGAAACTCAAATTTGATCGGACCAGTGCTTGCTCACGGATCGGGAGAAAATATTGCCTGCCCGCAAGCCCCTGGATCCAGCATTTCAGGCCGCGCGAATGCAGTAGCAATGCAAGGAATGATGCGGCGGAGGCTTTAGTGGGTGATCATGAATCTGGTATTCAGACTATCCAAGGGAGGACTCCGTTGTCACATGGAAGGGAGTGGGAGGCTTGCAAGG AAGAAAAAGCTGTTGGTGAAAGTACAGAGGTCTCTGATCAGAATTTTGCTGATGATGAGGCGGAGGTTGATGCAGAATCAAGCAAAGCATGCAAGAGAAGGAAGTTAAGAAGTGCTCTTACACGGAATTACCAAGTTGTTCCATCTGACAAACTGTTTGCTTCCACAAAAGCTGATGGAAGGAAAGATGCTCCAGAGTAAGGCATGCAAGAGTGGATCTGGTTGAATATGCAGTCAATGAGAACTGGATGAGTTAGTATTGGCGATTTAGTAGTATAGTTTTGAACTCTGTAGAGTCTGTCTTGGTAGAAGAATAATAGGATCGATCACTCACACCATGGTAGATTTATTGTTTGATCATATTGTTGTAATGG TTTTTTTTGTGTGTGTTGCTGTGTTCTGGCAACTGTTTGTTTGCAATGTGAGTAATATGTTT ]
[+] EMBL CA767554 [ TTGTCACATGGAAGGGAGTGGGAGGCTTGCAAGG AAGAAAAAGCTGTTGGTGAAAGTACAGAGGTCTCTGATCAAAATTTTGCTGATGATGAGGCGGAGGTTGATGCAGAATCAAGCAAAGCATGCAAGAGAAGGAAGTTAAGAAGTGCTCTTACACGGAATTACCAAGTTGTTCCATCTGACAAACTGTTTGCTTCCACAAAAGCTGATGGAAGGAAAGATGCTCCAGAGTAAGGCATGCAAGAGTGGATCTGGTTGAATATGCAGTCAATGAGAACTGGATGAGTTAGTATTGGCGATTTAGTAGTATAGTTCTGAACTCTGTAGAGTCTGTCTTGGTAGAAGAATAATAGGATCGATCACTCACAACTTGGTAGATTTATTGTTTGATCATATTGATGTAATGG TTTTTTTTGTGTGTGTTGCTGTGTTCTGGCAACTGTTTGTTTGCAATGTGAGTAATATGTTTATGTTTGCCACAAGATGAGAATGATGCAAAGCCCATCATTCCTTTTGCCATAATTCCATTGTACATACATGTACTCCCATCATGATATTGAGAATGAAAGATCACCAATTTTGCAGAATGATATCCAACATCTGTA]
[+] EMBL CA752827 [ cccgggcagGTACAGAGGTCTCTGATCAAAATTTTGCTGATGATGAGGCGGAGGTTGATGCAGAATCAAGCAAAGCATGCAAGAGAAGGAAGTTAAGAAGTGCTCTTACACGGAATTACCAAGTTGTTCCATCTGACAAACTGTTTGCTTCCACAAAAGCTGATGGAAGGAAAGATGCTCCAGAGTAAGGCATGCAAGAGTGGATCTGGTTGAATATGCAGTCAATGAGAACTGGATGAGTTAGTATTGGCGATTTAATAGTATAGTTCTGAACTCTGTAGAGTCTGTCTTGGTAGAAGAATAATAGGATCGATCACTCACAACTTGGTAGATTTATTGTTTGATCATATTGATGTAATGG TTTTTTTTGTGTGTGTTGCTGTGTTCTGGCAACTGTTTGTTTGCAATGTGAGTAATATGTTTATGTTTGCCACAAGATGAGAATGATGCAAAGCCCATCATTCCTTTTGCCATAA ]
[-] EMBL CF310863 [ TGCTGATGATGAGGCGGAGGTTGATGCAGAATCAAGCAAAGCATGCAAGAGAAGGAAGTTAAGAAGTGCTCTTACACGGAATTACCAAGTTGTTCCATCTGACAAACTGTTTGCTTCCACAAAAGTTGATGGAAGGAAAGATGCTCCAGAGTAAGGCATGCAAGAGTGGATCTGGTTGAATATGCAGTCAATGAGAACTGGATGAGTTAGTATTGGCGATTTAGTAGTATAGTTCTGAACTCTGTAGAGTCTGTCTTGGTAGAAGAATAATAGGATCGATCACTCACAACATGGTAGATTTATTGTTTGATCATATTGTTGTAATGG TTTTTTTTGTGTGTGTTGCTGTGTTCTGGCAACTGTTTGTTTGCAATGTGAGTAATATGTTTATGTTTGCCACAAGATGAGAATGATGCAAAGCCCATCATTCCTTTTGCCATAATTCCATTGTACATACATGTACTCCCATCATGATATTGAGAATGAAAGATCGCCAATTTTGCAAAAaaaaa ]
consensusID : consensus_14486#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 744 fasta sequence
[GGGAATAGCTGCGGCGCCCACATCAGAATGGGAGGTTCTTTCGTTGAGCAACTCTACAATCACGAACAACATGATGCTGGCAACGGATCAAGGTTCTCCGAGGTGGTGGTGTGGGATGAAACTCAAATATGATCGGACCAGTGCTTGCTCACGGATCGGGAGAAAATACTGGCTGCCCGCAAGCCCCTGGATCCAGGATTTCAGGCCACGCGAATGCAGTAGCAACTGCAAGGAATGATGCGGCGGCAGGCTTTAGTGGGTGATCATGAATCTGGTATTCAGACTATCCAAAGGGAGCGACTCCGCTTGTCACCTGGACAGGGAGTGGGAGGCTTGCAAGGCTAACAAAAAGCTGTTGGTGAAAGTACACAGGTCTCTGATCAGAATTTTGCTGATGATGAGGGGGAGGTTGATGCTAGAATCTCAGCATGGCATGCAAGAGATAGGAAGTGTAAGAAGTGCGTCTGACACGGACATTACCAAGTGGTCTCCATCTGACAAACTGTTTGCTTTCCACAATAAGCTGATGGAAGGAAAGATGCTCCATAGTAAGGCGATGCCAGAGTGGATCTGGTTGAGTATGCAGCCGATGAGAACTGGATGACTAACTATCGGCGACCTGAGTAGTATACTCCTGAACTCTGTAGAGTCTGTCTAGGTAGAACAGTAATAGGATCGATCACTCACGGCTTGGTAGATGAATGGTTCGATCCTCTTGCTGTAGTGGGTAAACCGGCGTGTGTC]
[+] EMBL CB964487 [GGGAATAGCTGCGGCGCCCACATCAGAATGGGAGGTTCTTTCGTTGAGCAACTCTACAATCACGAACAACATGATGCTGGCAACGGATCAAGGTTCTCCGAGGTGGTGGTGTGGGATGAAACTCAAATATGATCGGACCAGTGCTTGCTCACGGATCGGGAGAAAATACTGGCTGCCCGCAAGCCCCTGGATCCAGGATTTCAGGCCACGCGAATGCAGTAGCAACTGCAAGGAATGATGCGGCGGCAGGCTTTAGTGGGTGATCATGAATCTGGTATTCAGACTATCCAAAGGGAGCGACTCCGCTTGTCACCTGGACAGGGAGTGGGAGGCTTGCAAGGCTAACAAAAAGCTGTTGGTGAAAGTACACAGGTCTCTGATCAGAATTTTGCTGATGATGAGGGGGAGGTTGATGCTAGAATCTCAGCATGGCATGCAAGAGATAGGAAGTGTAAGAAGTGCGTCTGACACGGACATTACCAAGTGGTCTCCATCTGACAAACTGTTTGCTTTCCACAATAAGCTGATGGAAGGAAAGATGCTCCATAGTAAGGCGATGCCAGAGTGGATCTGGTTGAGTATGCAGCCGATGAGAACTGGATGACTAACTATCGGCGACCTGAGTAGTATACTCCTGAACTCTGTAGAGTCTGTCTAGGTAGAACAGTAATAGGATCGATCACTCACGGCTTGGTAGATGAATGGTTCGATCCTCTTGCTGTAGTGGGTAAACCGGCGTGTGTC]
consensusID : consensus_14486#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 714 fasta sequence
[TCACGGTTTTGTCTCCCCTTGTGGGGTCTTGGCGAGTACTCAATTTGATCGGACCCGTGCTTGCTCNCGGATCGGTGAGAAATACTGCCTGCCCGCAAGCCCTGGATCCACCATTTCAGCCGCGCGAATCAGTAGCAATGCAAGGAATGATGCGGCGGAGGCTTTAGCTGGGTGATCATGAATCTGGTATTCAGACTATCCACAGGGAGGACTCCGTTGTCACATGGAAGGGAGTGGGAGGCTTGCACAGGAAGAAAAANCTGTTGGTGAAAGTACAGAGGTCTCTGATCAGAATTTTGCTCGATGATGAGGCGGAGGTTGATGCAGAATCACAGCCAAGCATGCAAGAGAAGGAAGTTAAGAAGTGCTCTTACACGGAATTACCCAGTTGTTCCATCTGACNAACTGTTTGCTTCCACCAAAGCTGATGGAAGGAAAGATGCTCCAGAGTAAGGCATGCAAGAGTGGATCTGGTTGAATATGCAGTCCATGAGAACTGGATGAGTTAGTATTGGCGATTTAGTAGTATAGTTCTGAACTCTGTAGAGTCTGTCTTGGTAGAAGAATAATAGGATCGATCACTCACAACTTGGTAGATTTATTGTTTGATCATATTGATGTAATGGTTTTTTTTGTGTGTGTTGCTGTGTTCTGGCAACTGTTTGTTTGCAATGTGAGTAATATGTTTATGTTTGCCACAAAAAAAAAAAAAAA]
[+] EMBL BQ908376 [TCACGGTTTTGTCTCCCCTTGTGGGGTCTTGGCGAGTACTCAATTTGATCGGACCCGTGCTTGCTCNCGGATCGGTGAGAAATACTGCCTGCCCGCAAGCCCTGGATCCACCATTTCAGCCGCGCGAATCAGTAGCAATGCAAGGAATGATGCGGCGGAGGCTTTAGCTGGGTGATCATGAATCTGGTATTCAGACTATCCACAGGGAGGACTCCGTTGTCACATGGAAGGGAGTGGGAGGCTTGCACAGGAAGAAAAANCTGTTGGTGAAAGTACAGAGGTCTCTGATCAGAATTTTGCTCGATGATGAGGCGGAGGTTGATGCAGAATCACAGCCAAGCATGCAAGAGAAGGAAGTTAAGAAGTGCTCTTACACGGAATTACCCAGTTGTTCCATCTGACNAACTGTTTGCTTCCACCAAAGCTGATGGAAGGAAAGATGCTCCAGAGTAAGGCATGCAAGAGTGGATCTGGTTGAATATGCAGTCCATGAGAACTGGATGAGTTAGTATTGGCGATTTAGTAGTATAGTTCTGAACTCTGTAGAGTCTGTCTTGGTAGAAGAATAATAGGATCGATCACTCACAACTTGGTAGATTTATTGTTTGATCATATTGATGTAATGGTTTTTTTTGTGTGTGTTGCTGTGTTCTGGCAACTGTTTGTTTGCAATGTGAGTAATATGTTTATGTTTGCCACAAAAAAAAAA ]
[-] EMBL CF308244 [ AGAGAAGGAAGTTAAGAAGTGCTCTTACACGGAATTACCAAGTTGTTCCATCTGACAAACTGTTTGCTTCCACAAAAGCTGATGGAAGGAAAGATGCTCCAGAGTAAGGCATGCAAGAGTGGATCTGGTTGAATATGCAGTCAATGAGAACTGGATGAGTTAGTATTGGCGATTTAGTAGTATAGTTCTGAACTCTGTAGAGTCTGTCTTGGAAAAAAAATAATAGGATCGATCACTCCCAACATGGTAGATTTATTGTTTGATCATATTGTTGTAATGGTTTTTTTTGTGTGTGTTGCTGTGTTCTGGCAACTGTTTGTTTGCAATGTGAGTAATATGTTTATGTTTGCCAAAAAAAAAAAAAAAAA]
consensusID : consensus_14486#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 309 fasta sequence
[TCTCCCTTTGCTTCTTCCGTTGCAATTCCATTCTCCTCTCTCTCCTGCTTCTCTCTCTCCTCCTCTTCTTCACCTCCTCTTGTCTGTCCATAGATCGAGCCGCTCAGACCAAATCTTGGATGCGTTCTCTCTTCTTTCTCGCTGCGAGGGAGGGCGGGTTGTTCGATCTGCGGGTGAAATCGAGCGAGAGCTGTACATATTTCAAGAGAGGAAATTTTGGGCTGGTTTCTGATACGGTTCGAGAAGATTTTTGGCAATTTCTTCGGATTTTCCTCCCCTTGTGGGTTCCTTGGTTCATTGAGAAGAATA]
[+] EMBL CF308243 [TCTCCCTTTGCTTCTTCCGTTGCAATTCCATTCTCCTCTCTCTCCTGCTTCTCTCTCTCCTCCTCTTCTTCACCTCCTCTTGTCTGTCCATAGATCGAGCCGCTCAGACCAAATCTTGGATGCGTTCTCTCTTCTTTCTCGCTGCGAGGGAGGGCGGGTTGTTCGATCTGCGGGTGAAATCGAGCGAGAGCTGTACATATTTCAAGAGAGGAAATTTTGGGCTGGTTTCTGATACGGTTCGAGAAGATTTTTGGCAATTTCTTCGGATTTTCCTCCCCTTGTGGGTTCCTTGGTTCATTGAGAAGAATA]
consensusID : consensus_14486#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 217 fasta sequence
[CACGAGACNTCTTGGTGNATTTATGTTTGATCATNTTNATGTANTGGTTTNTTTTGTGTGTGTTGCTGTGTTCTGGCAACTGTTTGTTTGCAANGTGAGTAATATGTTTATGTTTGCCACAAGATGAGAATGATGCAAAGCCCNTCATTCCTTTTGCCATAATTCCATTGTACATACATGTACTCCCATCATGATATTGANAATGAAAGATCACCAA]
[+] EMBL AA751511 [CACGAGACNTCTTGGTGNATTTATGTTTGATCATNTTNATGTANTGGTTTNTTTTGTGTGTGTTGCTGTGTTCTGGCAACTGTTTGTTTGCAANGTGAGTAATATGTTTATGTTTGCCACAAGATGAGAATGATGCAAAGCCCNTCATTCCTTTTGCCATAATTCCATTGTACATACATGTACTCCCATCATGATATTGANAATGAAAGATCACCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14486#1 ------------------------------------------------------------
consensus_14486#2 ------------------------------------------------------------
consensus_14486#4 ------------------------------------------------------------
consensus_14486#0 TTTGCTTCTTCCGTTGCAATTCCATTCTCCTCTCTCTCCTGCTTCTCTCTCTCCTCCTCT 60
consensus_14486#3 ------------------------------------------------------------
consensus_14486#1 ------------------------------------------------------------
consensus_14486#2 ------------------------------------------------------------
consensus_14486#4 ------------------------------------------------------------
consensus_14486#0 TCTTCACCTCCTCTTGTCTGTCCATAGATCGAGCCGCTCAGACCAAATCTTGGATGCGTT 120
consensus_14486#3 ------------------------------------------------------------
consensus_14486#1 ------------------------------------------------------------
consensus_14486#2 ------------------------------------------------------------
consensus_14486#4 ------------------------------------------------------------
consensus_14486#0 CTCTCTTCTTTCTCGCTGCGAGGGAGGCGGGTTGTTCGATCTGCGGGTGAAATCGAGCGA 180
consensus_14486#3 ------------------------------------------------------------
consensus_14486#1 ------------------------------------------------------------
consensus_14486#2 ------------------------------------------------------------
consensus_14486#4 ------------------------------------------------------------
consensus_14486#0 GAGATCCCTAGACCTCCCCCTACTTCTCTGTAGCTGTACATATTTCAAGAGAGGAAATTT 240
consensus_14486#3 ------------------------------------------------------------
consensus_14486#1 ------------------------------------------------------------
consensus_14486#2 ------------------------------------------------------------
consensus_14486#4 ------------------------------------------------------------
consensus_14486#0 TGGGCTGGTTTCTGATACGGTTCGAGAAGATTTTTGGCAATTTCTTCGGATTTTCCTCCC 300
consensus_14486#3 ------------------------------------------------------------
consensus_14486#1 ------------------------------------------------------------
consensus_14486#2 ------------------------------------------------------------
consensus_14486#4 ------------------------------------------------------------
consensus_14486#0 CTTGTGGGTTCCTTGGTTCATTGAGAAGAATCAAATGGGTGATGTGTCAGTCAATCGACC 360
consensus_14486#3 ------------------------------------------------------------
consensus_14486#1 ------------------------------------------------------------
consensus_14486#2 ------------------------------------------------------------
consensus_14486#4 ------------------------------------------------------------
consensus_14486#0 GATCAAGGCGGAGCCAGCTGCAGGCGGCATTGCTCAGGGCAATCGAATCCTGGACATGAT 420
consensus_14486#3 ------------------------------------------------------------
consensus_14486#1 -------------------GGGAATAGCTGCGGCGCCCACATCAGAATGGGAGGTTCTTT 41
consensus_14486#2 ------------------------------------------------------------
consensus_14486#4 ------------------------------------------------------------
consensus_14486#0 GTCGTCAGGGTGGACAGATGAGCGGCACATGCATTATATAAGCTCAATGGAGGCTTCTTT 480
consensus_14486#3 ------------------------------------------------------------
consensus_14486#1 CGTTGAGCAACTCTACAATCACGAACAACATGATGCTGGCAACGGATCAAGGTTCTCCGA 101
consensus_14486#2 ---------------------------------------TCACGGTTTT--GTCTCCCCT 19
consensus_14486#4 ------------------------------------------------------------
consensus_14486#0 CGTTGAGCAACTCTACAATCACGAACAAAATGATGCTGGCAACGGATTCAAGGTTCTCCG 540
consensus_14486#3 ------------------------------------------------------------
consensus_14486#1 GGTGGTGGTGTGGGATGAAACTCAAATATGATCGGACCAGTGCTTGCTCACGGATCGGGA 161
consensus_14486#2 TGTGG-GGTCTTGGCGAGTACTCAA-TTTGATCGGACCCGTGCTTGCTCNCGGATCGGTG 77
consensus_14486#4 ------------------------------------------------------------
consensus_14486#0 TGGTGGGGTGTGGGA-GAAACTCAAATTTGATCGGACCAGTGCTTGCTCACGGATCGGGA 599
consensus_14486#3 ------------------------------------------------------------
consensus_14486#1 GAAAATACTGGCTGCCCGCAAGCCCCTGGATCCAGGATTTCAGGCCACGCGAATGCAGTA 221
consensus_14486#2 AGAAATACTGCCTGCCCGCAAGCCC-TGGATCCACCATTTCAG-CCGCGCGAAT-CAGTA 134
consensus_14486#4 ------------------------------------------------------------
consensus_14486#0 GAAAATACTGCCTGCCCGCAAGCCCCTGGATCCAGCATTTCAGGCCGCGCGAATGCAGTA 659
consensus_14486#3 ------------------------------------------------------------
consensus_14486#1 GCAACTGCAAGGAATGATGCGGCGGCAGGCTTTAG-TGGGTGATCATGAATCTGGTATTC 280
consensus_14486#2 GCAA-TGCAAGGAATGATGCGGCGG-AGGCTTTAGCTGGGTGATCATGAATCTGGTATTC 192
consensus_14486#4 ------------------------------------------------------------
consensus_14486#0 GCAA-TGCAAGGAATGATGCGGCGG-AGGCTTTAG-TGGGTGATCATGAATCTGGTATTC 716
consensus_14486#3 ---------TCTCCCTTTGCTTCTT-CCGTTGCAATTCCATTCTCCTCTCTCTCCTGCTT 50
consensus_14486#1 AGACTATCCAAAGGGAGCGACTCCGCTTGTCACCTGGACAGGGAGTGGGAGGCTTGCAAG 340
consensus_14486#2 AGACTATCCACAGGGAG-GACTCCG-TTGTCACATGGA-AGGGAGTGGGAGGCTTGCACA 249
consensus_14486#4 ---------------------------------------------CACGAGACNT-CTTG 14
consensus_14486#0 AGACTATCCAAGGGAGG--ACTCCG-TTGTCACATGGA-AGGGAGTGGGAGGCTTGCAAG 772
consensus_14486#3 CTCTCTCTCCTCCTCTTCTTCACCTCCTCTTGTCTGTCCATAGATCGAGCCGCTCAGACC 110
* *
consensus_14486#1 GCTAACAAAAAGCTGTTGGTGAAAGTACACAGGT-CTCTGATCAGAATTTTGCT-GATGA 398
consensus_14486#2 GG-AAGAAAAANCTGTTGGTGAAAGTACAGAGGT-CTCTGATCAGAATTTTGCTCGATGA 307
consensus_14486#4 GTGNATTTATGTTTGATCATNTTNATGTANTGGT-TTNTTTTGTGTGTGTTGCT--GTGT 71
consensus_14486#0 G--AAGAAAAAGCTGTTGGTGAAAGTACAGAGGT-CTCTGATCAGAATTTTGCT-GATGA 828
consensus_14486#3 AA-ATCTTGGATGCGTTCTCTCTTCTTTCTCGCTGCGAGGGAGGGCGGGTTGTTCGAT-C 168
* * * * * * *** * *
consensus_14486#1 TGAGGGGGAGGTTGAT--GCTAGAATCTCA-GCATGGC-ATGCAAGAGAT--AGGAAGTG 452
consensus_14486#2 TGAGGCGGAGGTTGAT--GC-AGAATCACA-GCCAAGC-ATGCAAGAGA---AGGAAGT- 358
consensus_14486#4 TCTGGCAACTGTTTGTTTGCAANGTGAGTA-ATATGTTTATGTTTGCCAC--AAGATGAG 128
consensus_14486#0 TGAGGCGGAGGTTGAT--GC-AGAATCA-A-GCAAAGC-ATGCAAGAGA---AGGAAGT- 878
consensus_14486#3 TGCGGGTGAAATCGA---GCGAGAGCTGTACATATTTCAAGAGAGGAAATTTTGGGCTGG 225
* ** * ** * * * * * *
consensus_14486#1 TAAGAAGTGCG-TCTGACACGGACATTACCAAGTGGTCTCCATCTGACAAACTGTTTGCT 511
consensus_14486#2 TAAGAAGTGC--TCTTACACGGA-ATTACCCAGTTGT-TCCATCTGACNAACTGTTTGCT 414
consensus_14486#4 AATGATGCAAAGCCCNTCATTCCTTTTGCCA--TAAT-TCCATTGTACATAC-ATGTACT 184
consensus_14486#0 TAAGAAGTGC--TCTTACACGGA-ATTACCAAGTTGT-TCCATCTGACAAACTGTTTGCT 934
consensus_14486#3 TTTCTGATACGGTTCGAGAAGATTTTTGGCAATTTCTTCGGATTTTCCTCCCCTTGTGGG 285
* ** * * * ** * * * *
consensus_14486#1 TTCCACAATAAGCTGATGGAAGGAAAGATGCTCCATAGTAAGGCGATGCCAGAGTGGATC 571
consensus_14486#2 TCCACCAA--AGCTGATGGAAGGAAAGATGCTCCAGAGTAAGGC-ATGCAAGAGTGGATC 471
consensus_14486#4 CCCATCATGATATTGA--NAATGAAAGATCACCAA------------------------- 217
consensus_14486#0 TCCACAAA--AGCTGATGGAAGGAAAGATGCTCCAGAGTAAGGC-ATGCAAGAGTGGATC 991
consensus_14486#3 TTCCTTGGTTCATTGA--GAAGAATA---------------------------------- 309
* *** ** * *
consensus_14486#1 TGGTTGAGTATGCAGCCGATGAGAACTGGATGACTAACTATCGGCGACCTGAGTAGTATA 631
consensus_14486#2 TGGTTGAATATGCAGTCCATGAGAACTGGATGAGTTAGTATTGGCGATTT-AGTAGTATA 530
consensus_14486#4 ------------------------------------------------------------
consensus_14486#0 TGGTTGAATATGCAGTCAATGAGAACTGGATGAGTTAGTATTGGCGATTT-AGTAGTATA 1050
consensus_14486#3 ------------------------------------------------------------
consensus_14486#1 CTCCTGAACTCTGTAGAGTCTGTCTAGGTAGAACAGTAATAGGATCGATCACTCACGGCT 691
consensus_14486#2 GTTCTGAACTCTGTAGAGTCTGTCTTGGTAGAAGAATAATAGGATCGATCACTCACAACT 590
consensus_14486#4 ------------------------------------------------------------
consensus_14486#0 GTTCTGAACTCTGTAGAGTCTGTCTTGGTAGAAGAATAATAGGATCGATCACTCACAACA 1110
consensus_14486#3 ------------------------------------------------------------
consensus_14486#1 TGGTAGATGAATGGTTCGATCCTCTTGCTGTAGTGGGTAAACCGGCGTGTGTC------- 744
consensus_14486#2 TGGTAGATTTATTGTTTGATCATATTGATGTAATGGTTTTTTTTGTGTGTGTTGCTGTGT 650
consensus_14486#4 ------------------------------------------------------------
consensus_14486#0 TGGTAGATTTATTGTTTGATCATATTGTTGTAATGGTTTTTTTTGTGTGTGTTGCTGTGT 1170
consensus_14486#3 ------------------------------------------------------------
consensus_14486#1 ------------------------------------------------------------
consensus_14486#2 TCTGGCAACTGTTTGTTTGCAATGTGAGTAATATGTTTATGTTTGCCACAAAAAAAAAAA 710
consensus_14486#4 ------------------------------------------------------------
consensus_14486#0 TCTGGCAACTGTTTGTTTGCAATGTGAGTAATATGTTTATGTTTGCCACAAGATGAGAAT 1230
consensus_14486#3 ------------------------------------------------------------
consensus_14486#1 ------------------------------------------------------------
consensus_14486#2 AAAA-------------------------------------------------------- 714
consensus_14486#4 ------------------------------------------------------------
consensus_14486#0 GATGCAAAGCCCATCATTCCTTTTGCCATAATTCCATTGTACATACATGTACTCCCATCA 1290
consensus_14486#3 ------------------------------------------------------------
consensus_14486#1 ------------------------------------------------------
consensus_14486#2 ------------------------------------------------------
consensus_14486#4 ------------------------------------------------------
consensus_14486#0 TGATATTGAGAATGAAAGATCACCAATTTTGCAGAATGATATCCAACATCTGTA 1344
consensus_14486#3 ------------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||