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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1449#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 877 fasta sequence
[CCATACGGACACTGCACCAAAAGACTATCTCTTCACCGGTGGTGGATTCTGCATGGAAGAGGGTGACGAGCAAGATACGGGAGTGGATCAATCTGGTGCAGAAATGGAGCATGAAACACGTGATGCCTGTGAGGGTATTGACGAGGTTTCTGAAAGTCAAAGCGGTAAAAGCATGAGCTATTCGGCGACTGGAGAGGGCACAGAGAATGCAAATACAGAGGCCCGAGGGGCGTCTTCATCGCAGGGACGCAATGCAAGCCGTGGTTCAGGTGCCGTGCCGAAGCTTACAAAGCGTAGGAGAAAATCATGACTCATTTGCAGCAGATCATGCCTCGCACATCATGCCGTTTTGTTCAACTGGGCAAGGTCACGTTTCGATTTGTTCGGCAGCCAATGAGTTGCGGGCTTGCGGCGTTGTCGTCTGTANGCCAAGTCTGAAGACTGAACAAAATGCAGGTCGGCATTCTGCACACCGTTTTCAGGCTTTTTTAGCCTTCTGCCCATTGTTTTTCTAGGACAGGTATCGCGTGTGGGGGGAAACTGACGGGATTCCTGTGATCATGCATTTTACGACTCGTTACGCTCCCCTCGTCAAACCGAGCACTCGTCCCGCCCAGTGTCGGGCGCCGACGCAGATACTCGCATTGGCGCGTGCGTAGCGTGGCCACCCCNAAAGTAACACGGTTTTAACCCACCGCTTTTCCGCTCTTTTCGCCCGGCCCGCAAGTTTTTCCCGACCCATACCCCCCCCTAACATATTACCGAGGCAGCACACCNCTCACTTCAAGTTTGCCTTCTGGTGGTGCGAGGACTGATCAGAGCGCGCTGCGCATCGCACATGTGCATTCGCGGCATCGATCTTCAGTGGGACTCCAAC]
[+] EMBL CA757766 [CCATACGGACACTGCACCAAAAGACTATCTCTTCACCGGTGGTGGATTCTGCATGGAAGAGGGTGACGAGCAAGATACGGGAGTGGATCAATCTGGTGCAGAAATGGAGCATGAAACACGTGATGCCTGTGAGGGTATTGACGAGGTTTCTGAAAGTCAAAGCGGTAAAAGCATGAGCTATTCGGCGACTGGAGAGGGCACAGAGAATGCAAATACAGAGGCCCGAGGGGCGTCTTCATCGCAGGGACGCAATGCAAGCCGTGGTTCAGGTGCCGTGCCGAAGCTTACAAAGCGTAGGAGAAAATCATGACTCATTTGCAGCAGATCATGCCTCGCACATCATGCCGTTTTGTTCAACTGGGCAAGGTCACGTTTCGATTTGTTCGGCAGCCAATGAGTTGCGGGCTTGCGGCGTTGTCGTCTGTANGCCAAGTCTGAAGACTGAACAAAATGCAGGTCGGCATTCTGCACACCGTTTTCAGGCTTTTTTAGCCTTCTGCCCATTGTTTTTCTAGGACAGGTATCGCGTGTGGGGGGAAACTGACGGGATTCCTGTGATCATGCATTTTACGACTCGTTACGCTCCCCTCGTCAAACCGAGCACTCGTCCCGCCCAGTGTCGGGCGCCGACGCAGATACTCGCATTGGCGCGTGCGTAGCGTGGCCACCCCNAAAGTAACACGGTTTTAACCCACCGCTTTTCCGCTCTTTTCGCCCGGCCCGCAAGTTTTTCCCGACCCATACCCCCCCCTAACATATTACCGAGGCAGCACACCNCTCACTTCAAGTTTGCCTTCTGGTGGTGCGAGGACTGATCAGAGCGCGCTGCGCATCGCACATGTGCATTCGCGGCATCGATCTTCAGTGGGACTCCAAC]
consensusID : consensus_1449#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 768 fasta sequence
[ACACAATCTAATCTGCTCCATCAGGATACGAGTGAATTAAACATCGATCAAACGCATACAGATCCCTCTGATATGAACGAAGATCCTTCGGGCTTTGAGTTACCCGAGGATTGCCATACGGACACTGCACCAAAAGACTATCTCTTCACCGGTGGTGGATTCTGCATGGAAGAGGGTGACGAGCAAGATACGGGAGTGGATCAATCTGGTGCAGAAATGGAGCATGAAACACGTGATGCCTGTGAGGGTATTGACGAGGTTTCTGAAAGTCAAAGCGGTAAAAGCATGAGCTATTCGGCGACTGGAGAGGGCACAGAGAATGCAAATACAGAGGCCCGAGGGGCGTCTTCATCGCAGGGACGCAATGCAAGCCGTGGTTCAGGTGCCGTGCCGAAGCTTACAAAGCGTAGGAGAAAATCATGACTCATTTGCAGCAGATCATGCCTCGCACATCATGCCGTTTTGTTCAACTGGGCAAGGTCACGTTTCGATTTGTTCGGCAGCCAATGAGTTGCGGGCTTGCGGCGTTGTCGTCTGTAGGCCAAGTCTGAAGACTGAACAAAATGCAGGTCGGCATTCTGCACACCGTTTTCANGCTTTTTCAGGNTTCTGTCCATTGNTTTTCTAGGACAGGTATCTATATTCGGNGTAAACTGACGTGATTCCTTGCATCAGGATGTATGTGTAACGCANGCTTACCAANAAAAGCAATGCACCCCGATGNAAATACTGNTNAAATTGNAATACNCCCCAAAAAACTGGCNAATT]
[+] EMBL CA765552 [ACACAATCTAATCTGCTCCATCAGGATACGAGTGAATTAAACATCGATCAAACGCATACAGATCCCTCTGATATGAACGAAGATCCTTCGGGCTTTGAGTTACCCGAGGATTGCCATACGGACACTGCACCAAAAGACTATCTCTTCACCGGTGGTGGATTCTGCATGGAAGAGGGTGACGAGCAAGATACGGGAGTGGATCAATCTGGTGCAGAAATGGAGCATGAAACACGTGATGCCTGTGAGGGTATTGACGAGGTTTCTGAAAGTCAAAGCGGTAAAAGCATGAGCTATTCGGCGACTGGAGAGGGCACAGAGAATGCAAATACAGAGGCCCGAGGGGCGTCTTCATCGCAGGGACGCAATGCAAGCCGTGGTTCAGGTGCCGTGCCGAAGCTTACAAAGCGTAGGAGAAAATCATGACTCATTTGCAGCAGATCATGCCTCGCACATCATGCCGTTTTGTTCAACTGGGCAAGGTCACGTTTCGATTTGTTCGGCAGCCAATGAGTTGCGGGCTTGCGGCGTTGTCGTCTGTAGGCCAAGTCTGAAGACTGAACAAAATGCAGGTCGGCATTCTGCACACCGTTTTCANGCTTTTTCAGGNTTCTGTCCATTGNTTTTCTAGGACAGGTATCTATATTCGGNGTAAACTGACGTGATTCCTTGCATCAGGATGTATGTGTAACGCANGCTTACCAANAAAAGCAATGCACCCCGATGNAAATACTGNTNAAATTGNAATACNCCCCAAAAAACTGGCNAATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1449#0 ------------------------------------------------------------
consensus_1449#1 ACACAATCTAATCTGCTCCATCAGGATACGAGTGAATTAAACATCGATCAAACGCATACA 60
consensus_1449#0 -----------------------------------------------------CCATACG 7
consensus_1449#1 GATCCCTCTGATATGAACGAAGATCCTTCGGGCTTTGAGTTACCCGAGGATTGCCATACG 120
*******
consensus_1449#0 GACACTGCACCAAAAGACTATCTCTTCACCGGTGGTGGATTCTGCATGGAAGAGGGTGAC 67
consensus_1449#1 GACACTGCACCAAAAGACTATCTCTTCACCGGTGGTGGATTCTGCATGGAAGAGGGTGAC 180
************************************************************
consensus_1449#0 GAGCAAGATACGGGAGTGGATCAATCTGGTGCAGAAATGGAGCATGAAACACGTGATGCC 127
consensus_1449#1 GAGCAAGATACGGGAGTGGATCAATCTGGTGCAGAAATGGAGCATGAAACACGTGATGCC 240
************************************************************
consensus_1449#0 TGTGAGGGTATTGACGAGGTTTCTGAAAGTCAAAGCGGTAAAAGCATGAGCTATTCGGCG 187
consensus_1449#1 TGTGAGGGTATTGACGAGGTTTCTGAAAGTCAAAGCGGTAAAAGCATGAGCTATTCGGCG 300
************************************************************
consensus_1449#0 ACTGGAGAGGGCACAGAGAATGCAAATACAGAGGCCCGAGGGGCGTCTTCATCGCAGGGA 247
consensus_1449#1 ACTGGAGAGGGCACAGAGAATGCAAATACAGAGGCCCGAGGGGCGTCTTCATCGCAGGGA 360
************************************************************
consensus_1449#0 CGCAATGCAAGCCGTGGTTCAGGTGCCGTGCCGAAGCTTACAAAGCGTAGGAGAAAATCA 307
consensus_1449#1 CGCAATGCAAGCCGTGGTTCAGGTGCCGTGCCGAAGCTTACAAAGCGTAGGAGAAAATCA 420
************************************************************
consensus_1449#0 TGACTCATTTGCAGCAGATCATGCCTCGCACATCATGCCGTTTTGTTCAACTGGGCAAGG 367
consensus_1449#1 TGACTCATTTGCAGCAGATCATGCCTCGCACATCATGCCGTTTTGTTCAACTGGGCAAGG 480
************************************************************
consensus_1449#0 TCACGTTTCGATTTGTTCGGCAGCCAATGAGTTGCGGGCTTGCGGCGTTGTCGTCTGTAN 427
consensus_1449#1 TCACGTTTCGATTTGTTCGGCAGCCAATGAGTTGCGGGCTTGCGGCGTTGTCGTCTGTAG 540
***********************************************************
consensus_1449#0 GCCAAGTCTGAAGACTGAACAAAATGCAGGTCGGCATTCTGCACACCGTTTTCAGGCTTT 487
consensus_1449#1 GCCAAGTCTGAAGACTGAACAAAATGCAGGTCGGCATTCTGCACACCGTTTTCANGCTTT 600
****************************************************** *****
consensus_1449#0 TTTAGCCTTCTGCCCATTGTTTTTCTAGGACAGGTATCGCGTGTGGGGGGAAACTGACGG 547
consensus_1449#1 TTCAGGNTTCTGTCCATTGNTTTTCTAGGACAGGTATCTATATTCGGNGTAAACTGACGT 660
** ** ***** ****** ****************** * ** * *********
consensus_1449#0 GATTCCTGTGATCATGCATTTTACGACTCGTTACGCTCCCCTCGTCAAACCGAGCACT-C 606
consensus_1449#1 GATTCCTTGCATCAGG-ATGT----ATGTGTAACGCANGC-TTACCAANAAAAGCAATGC 714
******* **** * ** * * ** **** * * *** **** * *
consensus_1449#0 GTCCCGCCCAGTGTCGGGCGCCGACGCAGATACTCGCATTGGCGCGTGCGTAGCGTGGCC 666
consensus_1449#1 ACCCCGATGNAAATACTGNTNAAATTGNAATACNCCCCAAAAAACTGGCNAATT------ 768
**** * * * **** * * * ** *
consensus_1449#0 ACCCCNAAAGTAACACGGTTTTAACCCACCGCTTTTCCGCTCTTTTCGCCCGGCCCGCAA 726
consensus_1449#1 ------------------------------------------------------------
consensus_1449#0 GTTTTTCCCGACCCATACCCCCCCCTAACATATTACCGAGGCAGCACACCNCTCACTTCA 786
consensus_1449#1 ------------------------------------------------------------
consensus_1449#0 AGTTTGCCTTCTGGTGGTGCGAGGACTGATCAGAGCGCGCTGCGCATCGCACATGTGCAT 846
consensus_1449#1 ------------------------------------------------------------
consensus_1449#0 TCGCGGCATCGATCTTCAGTGGGACTCCAAC 877
consensus_1449#1 -------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||